Citrus Sinensis ID: 041308
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 244 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.918 | 0.64 | 0.399 | 2e-41 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.897 | 0.6 | 0.402 | 1e-40 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.926 | 0.622 | 0.383 | 3e-40 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.926 | 0.626 | 0.379 | 7e-40 | |
| Q6T1F5 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.852 | 0.569 | 0.417 | 1e-39 | |
| Q9XGV9 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.926 | 0.626 | 0.379 | 3e-39 | |
| Q9FK25 | 363 | Flavone 3'-O-methyltransf | no | no | 0.868 | 0.584 | 0.386 | 5e-39 | |
| Q06509 | 364 | Caffeic acid 3-O-methyltr | N/A | no | 0.872 | 0.585 | 0.388 | 5e-39 | |
| O81646 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.868 | 0.590 | 0.395 | 6e-39 | |
| Q00763 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.852 | 0.569 | 0.402 | 9e-39 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 14/238 (5%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + + MS M +L+ Y
Sbjct: 124 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+K +VDVGG G L +I+ K+ I +GINF+LP VV APS V H+GGDMF
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTI-KGINFELPHVVEDAPSHSGVEHVGGDMFV 241
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+DD C+ +++N Y+AL K+I E VLP+ + S T+ ++
Sbjct: 242 SVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVV 301
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFSFWILE 238
D+ VM + GK +TE+EF+ L GF R S + T WI+E
Sbjct: 302 HVDV-VMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNT-----------WIME 347
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 130/226 (57%), Gaps = 7/226 (3%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + K MS M +L+ Y
Sbjct: 137 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+K LVDVGG G + I+ K+ I +GINFDLP V+ APS P V H+GGDMF
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIEDAPSYPGVEHVGGDMFV 254
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
SI DA+FMKW+ W+D+ C ++N Y+AL K+I E +LP + S T+ ++
Sbjct: 255 SIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVV 314
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP----HLRAFISIIF 222
D+ +M + GK +T++EF+ L GF H AF + I
Sbjct: 315 HIDV-IMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 359
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 137/240 (57%), Gaps = 14/240 (5%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVL+ I PF K +G A+ Y+GK P+ N + + MS M +L+ Y
Sbjct: 137 MESWYHLKDAVLEGGI-PFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEIY 195
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+K +VDVGG G L +I+ K+ I +GINFDLP V+ APS P V H+GGDMF
Sbjct: 196 QGFQGLKTVVDVGGGTGATLNMIVSKYPSI-KGINFDLPHVIEDAPSYPGVDHVGGDMFV 254
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+D C ++N ++AL K+I E +LP+ + + T+ +
Sbjct: 255 SVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVILAECLLPEAPDSTLSTQNTV 314
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFSFWILERL 240
D+ +M + GK +TE+EF+ L GF R FI + ++ WI+E L
Sbjct: 315 HVDV-IMLAHNPGGKERTEKEFEALAKGAGF---RGFIKVCCA--------YNSWIMELL 362
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 14/240 (5%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AV+D I PF K +G A+ Y+G P+ N + + MS M +L+ Y
Sbjct: 135 MESWYHLSDAVVDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETY 193
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF G+K +VDVGG G L +I+ K+ I +GINFDLP V+ APS P V H+GGDMF
Sbjct: 194 TGFDGLKTVVDVGGGTGATLNMIVSKYPSI-KGINFDLPHVIEDAPSYPGVEHVGGDMFV 252
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+D+ C ++N Y AL K+I E VLP+ + T+ ++
Sbjct: 253 SVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLATKNVV 312
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFSFWILERL 240
D+ +M + GK +TE+EF+ L + GF F + ++ WI+E L
Sbjct: 313 HIDV-IMLAHNPGGKERTEKEFQGLAKAAGFKQ-----------FNKACCAYNTWIMELL 360
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 124/211 (58%), Gaps = 3/211 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+GK P+ N + + MS M +L Y
Sbjct: 139 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTITMKKILQTY 197
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
DGF G+K +VDVGG G L +I+ K+ + +GINFDLP VV APS V H+GGDMF
Sbjct: 198 DGFGGLKTVVDVGGGTGATLNMIISKYPNL-KGINFDLPHVVEDAPSYAGVEHVGGDMFV 256
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+D C ++N YKAL K+I E +LP+ + T+ ++
Sbjct: 257 SVPKGDAIFMKWICHDWSDAHCLAFLKNCYKALPKDGKVILAECILPEAPDSKLTTKNVI 316
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
D+ +M + GK +TE+EF+ G GF
Sbjct: 317 LIDV-IMLAHNPGGKERTEKEFEAFGKQAGF 346
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ammi majus (taxid: 48026) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 132/240 (55%), Gaps = 14/240 (5%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + + MS M +L+ Y
Sbjct: 135 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETY 193
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF G+K +VDVGG G L +I+ K+ I +GINFDLP VV APS P V H+GGDMF
Sbjct: 194 TGFDGLKTVVDVGGGTGATLNMIISKYPSI-KGINFDLPHVVEDAPSYPGVEHVGGDMFV 252
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+D C ++ Y+AL K+I E VLP+ + T+ ++
Sbjct: 253 SVPKGDAIFMKWICHDWSDAHCVKFLKKCYEALPENGKVILAECVLPEAPDTGLATKNVV 312
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFSFWILERL 240
D+ +M + GK +TE+EF+ L ++GF ++ WI+E L
Sbjct: 313 HIDV-IMLAHNPGGKERTEKEFQVLAKASGFKQFNKVCCA-----------YNSWIMELL 360
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 129/215 (60%), Gaps = 3/215 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +A+LD I PF K +G A+ Y+G P+ N + MS M +L+ Y
Sbjct: 135 MESWYHLKDAILDGGI-PFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETY 193
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG G L++I+ K+ + +GINFDLP V+ APS P + H+GGDMF
Sbjct: 194 KGFEGLTSLVDVGGGIGATLKMIVSKYPNL-KGINFDLPHVIEDAPSHPGIEHVGGDMFV 252
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+D+ C ++N Y++L K+I E +LP+ + S T+ ++
Sbjct: 253 SVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVV 312
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
D +M + GK +TE+EF+ L ++GF ++
Sbjct: 313 HVDC-IMLAHNPGGKERTEKEFEALAKASGFKGIK 346
|
Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 6 |
| >sp|Q06509|COMT1_MAIZE Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 122/216 (56%), Gaps = 3/216 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G + N + + M V +LD Y
Sbjct: 138 MESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDFY 196
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+GV LVDVGG G L I +H I G+NFDLP V+++AP P V H+GGDMF
Sbjct: 197 TGFEGVSTLVDVGGGVGATLHAITSRHPHI-SGVNFDLPHVISEAPPFPGVRHVGGDMFA 255
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAI MKW+L W+D C +++N Y AL K+I E VLP ++ + + + +
Sbjct: 256 SVPAGDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVF 315
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216
D+ +M + GK + E+EF++L GF +A
Sbjct: 316 HVDM-IMLAHNPGGKERYEREFRELAKGAGFSGFKA 350
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Zea mays (taxid: 4577) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O81646|COMT1_CAPCH Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD + PF K +G + Y+G P+ N + MS M +L+ Y
Sbjct: 133 MESWYHLTDAVLDGGV-PFNKAYGMTTFEYHGTDPRFNKVFNCGMSDHTTLSMKKILEDY 191
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ +VDVGG G + +I+ K+ I +GINFDLP V+ APS P V +GGDMF
Sbjct: 192 TGFEGLNSIVDVGGGTGATVNMIVSKYPSI-KGINFDLPHVIRDAPSYPGVEQVGGDMFV 250
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+DD C +++N Y+AL A K+I E +LP+ + S T++ +
Sbjct: 251 SVPKADAIFMKWICHDWSDDHCIKLLKNCYEALPANGKVIIVECILPEAPDTSAATKSKV 310
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
GDI +M + GK +TE++F+ L F R
Sbjct: 311 HGDI-IMLAHNPGGKERTEKDFEALANWGWFSRFR 344
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum chinense (taxid: 80379) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 3/211 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +A+LD I PF K +G A+ Y+G P+ N + K MS M +L+ Y
Sbjct: 137 MESWYYLKDAILDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG G + I+ K+ I +GINFDLP V+ APS P V H+GGDMF
Sbjct: 196 KGFEGLTSLVDVGGGTGAVVNTIVSKYPSI-KGINFDLPHVIEDAPSYPGVEHVGGDMFV 254
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DA+FMKW+ W+D C ++N Y AL K+I E +LP + S T+ ++
Sbjct: 255 SVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVV 314
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
D+ +M + GK +TE+EF+ L GF
Sbjct: 315 HVDV-IMLAHNPGGKERTEKEFEGLAKGAGF 344
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 244 | ||||||
| 225441106 | 358 | PREDICTED: caffeic acid 3-O-methyltransf | 0.889 | 0.606 | 0.774 | 2e-97 | |
| 147799198 | 358 | hypothetical protein VITISV_030414 [Viti | 0.922 | 0.628 | 0.747 | 1e-96 | |
| 224069629 | 364 | beta-alanine n-methyltransferase related | 0.889 | 0.596 | 0.783 | 1e-96 | |
| 255556786 | 357 | o-methyltransferase, putative [Ricinus c | 0.881 | 0.602 | 0.753 | 7e-95 | |
| 356549592 | 355 | PREDICTED: caffeic acid 3-O-methyltransf | 0.889 | 0.611 | 0.728 | 3e-90 | |
| 15231756 | 359 | putative O-diphenol-O-methyl transferase | 0.922 | 0.626 | 0.690 | 5e-88 | |
| 449440171 | 409 | PREDICTED: caffeic acid 3-O-methyltransf | 0.889 | 0.530 | 0.689 | 2e-86 | |
| 30313849 | 375 | S-adenosyl-L-methionine: beta-alanine N- | 0.881 | 0.573 | 0.611 | 3e-73 | |
| 30313843 | 234 | S-adenosyl-L-methionine: beta-alanine N- | 0.881 | 0.918 | 0.611 | 1e-72 | |
| 115449861 | 365 | Os02g0823400 [Oryza sativa Japonica Grou | 0.881 | 0.589 | 0.584 | 9e-69 |
| >gi|225441106|ref|XP_002264566.1| PREDICTED: caffeic acid 3-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 168/217 (77%), Positives = 191/217 (88%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M+AWPLVHEAV+D T EPF K +GEPAYSYYGKKP+MN LM++AMS V VPFM ++L+GY
Sbjct: 129 MTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKPEMNDLMQRAMSGVSVPFMKAILNGY 188
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
+GF GV+RLVDVGGSAGDCLR+ILQKH I EGINFDLPEVVAKAP+IP VTH+GGDMFK
Sbjct: 189 NGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGINFDLPEVVAKAPNIPGVTHVGGDMFK 248
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKWVLTTWTD+ECKLIM+N Y AL G K+IACEPVLP +S+ S RTRALL
Sbjct: 249 SVPDGDAIFMKWVLTTWTDEECKLIMKNCYNALPVGGKMIACEPVLPKESDNSLRTRALL 308
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF 217
EGDIFVMTIYRAKGKH+TE+EF+QLG S GFPHLRAF
Sbjct: 309 EGDIFVMTIYRAKGKHRTEEEFRQLGLSAGFPHLRAF 345
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799198|emb|CAN65776.1| hypothetical protein VITISV_030414 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/226 (74%), Positives = 193/226 (85%), Gaps = 1/226 (0%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M+AWPLVHEAV+D T EPF K +GEPAYSYYGKKP+MN LM++AMS V VPFM ++L+GY
Sbjct: 129 MTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKPEMNDLMQRAMSGVSVPFMKAILNGY 188
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF GV+RLVDVGGSAGDCLR+ILQKH I EGINFDLPEVVAKAP+IP VTH+GGDMFK
Sbjct: 189 SGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGINFDLPEVVAKAPTIPGVTHVGGDMFK 248
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKWVLTTWTD+ECKLIM+N Y AL G K+IACEPVLP +S+ S RTRALL
Sbjct: 249 SVPDGDAIFMKWVLTTWTDEECKLIMKNCYNALPVGGKMIACEPVLPKESDNSLRTRALL 308
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF-ISIIFTLF 225
EGDIFVMTIYRAKGKH+TE+EF+QLG S GFPHL AF I +T+
Sbjct: 309 EGDIFVMTIYRAKGKHRTEEEFRQLGLSAGFPHLXAFYIDXFYTVL 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069629|ref|XP_002326388.1| beta-alanine n-methyltransferase related [Populus trichocarpa] gi|222833581|gb|EEE72058.1| beta-alanine n-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 170/217 (78%), Positives = 189/217 (87%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M AWPLVHEAVLDPT EPF K +GEPAY YYGK+P+MN LM KAMS V VPFM ++LDGY
Sbjct: 135 MKAWPLVHEAVLDPTTEPFVKANGEPAYDYYGKQPEMNELMLKAMSGVSVPFMEAMLDGY 194
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
DGFKGV+RLVDVGGSAGDCLR+IL+KH + +GINFDLPEVVAKAP IP VT++GGDMFK
Sbjct: 195 DGFKGVERLVDVGGSAGDCLRMILKKHPGVRQGINFDLPEVVAKAPIIPGVTNVGGDMFK 254
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
SI DAIFMKW+LTTWTD+ECKLIMEN YKAL G KLIACEPVLP DS++S RTRALL
Sbjct: 255 SIPDGDAIFMKWILTTWTDNECKLIMENCYKALPVGGKLIACEPVLPKDSDDSHRTRALL 314
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF 217
EGDIFVMTIYRAKGKH+TE+EFKQLG S GF + RAF
Sbjct: 315 EGDIFVMTIYRAKGKHRTEEEFKQLGQSVGFSYFRAF 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556786|ref|XP_002519426.1| o-methyltransferase, putative [Ricinus communis] gi|223541289|gb|EEF42840.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 162/215 (75%), Positives = 188/215 (87%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M AWPLVHEAVLD T EPFAK +GEPAY YYGK+P+MN LM+KAMS + VPFM +VL+GY
Sbjct: 128 MRAWPLVHEAVLDSTTEPFAKANGEPAYDYYGKRPEMNELMQKAMSGLSVPFMKAVLNGY 187
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
DGF+GV+++VDVGGSAGDCL+ ILQK+ + EGINFDLPEVVAKAP+IP VTH+GGDMFK
Sbjct: 188 DGFQGVEKIVDVGGSAGDCLKTILQKYPNVREGINFDLPEVVAKAPNIPGVTHVGGDMFK 247
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+LTTWTDDECK+IMEN YKAL G KLIACEPVLP+ +++S RTRALL
Sbjct: 248 SVPSADAIFMKWILTTWTDDECKVIMENCYKALPVGGKLIACEPVLPNQTDDSHRTRALL 307
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
EGDIFVMTIYRAKGKH+TE+EFK+LG S GF H R
Sbjct: 308 EGDIFVMTIYRAKGKHRTEEEFKKLGHSVGFSHFR 342
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549592|ref|XP_003543176.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/217 (72%), Positives = 183/217 (84%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M AWP+VHEAV+DPT EPF + +GEPAY YY K P+MN LM +AMS V VPF+ ++L+GY
Sbjct: 126 MRAWPMVHEAVVDPTKEPFERANGEPAYGYYLKHPEMNDLMVRAMSGVSVPFIRAMLEGY 185
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
DGF+GV++LVDVGGS GDCLR+IL+KH I EGINFDLPEVVAKAP IP VTH+GGDMFK
Sbjct: 186 DGFQGVEKLVDVGGSGGDCLRMILEKHPTIKEGINFDLPEVVAKAPQIPFVTHVGGDMFK 245
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
I DAIFMKWVLTTWTD+ECK IM+N +KAL G KLIACEPVLP+DS+ES RTRALL
Sbjct: 246 FIPQGDAIFMKWVLTTWTDEECKHIMQNCHKALPEGGKLIACEPVLPEDSDESHRTRALL 305
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF 217
EGDIFVMTIYRAKGKH+TE++F+QL GFP RAF
Sbjct: 306 EGDIFVMTIYRAKGKHRTEEQFRQLAIDAGFPRFRAF 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231756|ref|NP_190882.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana] gi|14194165|gb|AAK56277.1|AF367289_1 AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|6630734|emb|CAB64217.1| caffeic acid O-methyltransferase-like protein [Arabidopsis thaliana] gi|22137206|gb|AAM91448.1| AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|332645520|gb|AEE79041.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 156/226 (69%), Positives = 182/226 (80%), Gaps = 1/226 (0%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M AWPLVH AV++P EP+ K +GE AY+ YGK +MNGLM+KAMS V VPFM ++LDGY
Sbjct: 130 MRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEEMNGLMQKAMSGVSVPFMKAILDGY 189
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
DGFK V LVDVGGSAGDCLR+ILQ+ + EGINFDLPEVVAKAP+IP VTH+GGDMF+
Sbjct: 190 DGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINFDLPEVVAKAPNIPGVTHVGGDMFQ 249
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKWVLTTWTD+ECK IM+N Y AL G KLIACEPVLP +++ES RTRALL
Sbjct: 250 SVPSADAIFMKWVLTTWTDEECKQIMKNCYNALPVGGKLIACEPVLPKETDESHRTRALL 309
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF-ISIIFTLF 225
EGDIFVMTIYR KGKH+TE+EF +LG S GFP R F I +T+
Sbjct: 310 EGDIFVMTIYRTKGKHRTEEEFIELGLSAGFPTFRPFYIDYFYTIL 355
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440171|ref|XP_004137858.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus] gi|449524758|ref|XP_004169388.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 151/219 (68%), Positives = 181/219 (82%), Gaps = 2/219 (0%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M AWP VHEA +D T EPF + +GE AYSYYGKK +MN LM++AM+ V VPFM +VLDGY
Sbjct: 178 MRAWPRVHEAAIDSTTEPFVRANGEAAYSYYGKKTEMNELMQRAMAGVSVPFMKAVLDGY 237
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE--VTHIGGDM 118
DGFKGV++LVDVGGSAGDCLR+ILQK+ I EGINFDLPEVVA+AP+IPE V+H+GGDM
Sbjct: 238 DGFKGVEKLVDVGGSAGDCLRMILQKYPHIKEGINFDLPEVVARAPTIPETGVSHVGGDM 297
Query: 119 FKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA 178
FKSI DAIFMKWVL+TWTDDECK+I+EN K+L G KLIACEP LP+ ++ES RTRA
Sbjct: 298 FKSIPTGDAIFMKWVLSTWTDDECKIILENCCKSLPVGGKLIACEPTLPEKTDESHRTRA 357
Query: 179 LLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF 217
LL D+F+MTIY+AK K +TE++F+QLG S GF LR F
Sbjct: 358 LLASDVFIMTIYKAKSKQRTEEQFRQLGLSAGFSALRPF 396
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30313849|gb|AAP03058.1| S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] | Back alignment and taxonomy information |
|---|
Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 167/216 (77%), Gaps = 1/216 (0%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVL-DG 59
+ AWP +H A+LD + EPFA+V+GEPAY YYGK ++N M+ AMS V VP+M ++L G
Sbjct: 145 LKAWPFLHTAILDASTEPFARVNGEPAYQYYGKNDELNKNMQYAMSGVSVPYMKALLGSG 204
Query: 60 YDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMF 119
YDGF+GVK LVDVGGS+GDCLR+I+ K+ I + INFDLPEVVAKAP IP +TH+GG+MF
Sbjct: 205 YDGFEGVKTLVDVGGSSGDCLRMIINKYKDIPKAINFDLPEVVAKAPKIPGITHVGGNMF 264
Query: 120 KSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL 179
+S+ DAIF+KWVLT +TD+E +M N KAL G KLI EP LP++S+ES RTRAL
Sbjct: 265 ESVPSGDAIFVKWVLTCFTDEEVITLMRNCNKALPVGGKLICSEPTLPENSDESHRTRAL 324
Query: 180 LEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
L DIF+MT YRAKGKH+TE+E++QLG GFP R
Sbjct: 325 LVADIFIMTTYRAKGKHRTEEEYRQLGLLAGFPKFR 360
|
Source: Limonium latifolium Species: Limonium latifolium Genus: Limonium Family: Plumbaginaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30313843|gb|AAP03055.1| S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium] | Back alignment and taxonomy information |
|---|
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 167/216 (77%), Gaps = 1/216 (0%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVL-DG 59
+ AWP +H A+LD + EPFA+V+GEPAY YYGK ++N M+ AMS V VP+M ++L G
Sbjct: 4 LKAWPFLHTAILDASTEPFARVNGEPAYQYYGKNDELNKNMQYAMSGVSVPYMKALLGSG 63
Query: 60 YDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMF 119
YDGF+GVK LVDVGGS+GDCLR+I+ K+ I + INFDLPEVVAKAP IP +TH+GG+MF
Sbjct: 64 YDGFEGVKTLVDVGGSSGDCLRMIINKYKDIPKAINFDLPEVVAKAPKIPGITHVGGNMF 123
Query: 120 KSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL 179
+S+ DAIF+KWVLT +TD+E +M N KAL G KLI EP LP++S+ES RTRAL
Sbjct: 124 ESVPSGDAIFVKWVLTCFTDEEVITLMRNCNKALPVGGKLICSEPTLPENSDESHRTRAL 183
Query: 180 LEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
L DIF+MT YRAKGKH+TE+E++QLG GFP R
Sbjct: 184 LVADIFIMTTYRAKGKHRTEEEYRQLGLLAGFPKFR 219
|
Source: Limonium latifolium Species: Limonium latifolium Genus: Limonium Family: Plumbaginaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115449861|ref|NP_001048569.1| Os02g0823400 [Oryza sativa Japonica Group] gi|48716310|dbj|BAD22923.1| putative O-diphenol-O-methyl transferase [Oryza sativa Japonica Group] gi|48717082|dbj|BAD22855.1| putative O-diphenol-O-methyl transferase [Oryza sativa Japonica Group] gi|113538100|dbj|BAF10483.1| Os02g0823400 [Oryza sativa Japonica Group] gi|215740918|dbj|BAG97074.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623941|gb|EEE58073.1| hypothetical protein OsJ_08933 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 128/219 (58%), Positives = 165/219 (75%), Gaps = 4/219 (1%)
Query: 3 AWPLVHEAVLDPT-IEPFAKVH-GEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
AWPL+HEAVLDP+ EPFA+ + G PAY+YYGK + N +M +AM+ V PFM ++L+GY
Sbjct: 134 AWPLLHEAVLDPSGPEPFARANAGVPAYAYYGKDREANEVMLRAMTGVSEPFMEALLEGY 193
Query: 61 D--GFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDM 118
GF+GV LVDVGGS+G CL +I+++ I +G+NFDLP+VVA AP IP V H+GGDM
Sbjct: 194 GDGGFEGVSTLVDVGGSSGACLEMIMRRVRTIRDGVNFDLPDVVAAAPPIPGVRHVGGDM 253
Query: 119 FKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA 178
FKSI DAIFMKWVLTTWT++EC I+ N +KAL G K+IACEPV+PD ++ S RTRA
Sbjct: 254 FKSIPSGDAIFMKWVLTTWTNEECTAILSNCHKALPGGGKVIACEPVVPDTTDGSTRTRA 313
Query: 179 LLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF 217
LLE DIFVM YR +G+ ++E+EF+ LG + GF RA
Sbjct: 314 LLENDIFVMATYRTQGRERSEEEFRHLGLAAGFASFRAI 352
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 244 | ||||||
| TAIR|locus:2102038 | 359 | AT3G53140 [Arabidopsis thalian | 0.918 | 0.623 | 0.693 | 7.4e-82 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.868 | 0.584 | 0.386 | 1.6e-38 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.872 | 0.578 | 0.368 | 5.7e-36 | |
| UNIPROTKB|P93324 | 372 | P93324 "Isoliquiritigenin 2'-O | 0.885 | 0.580 | 0.368 | 3.1e-35 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.868 | 0.588 | 0.353 | 8.3e-35 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.897 | 0.622 | 0.346 | 1.5e-33 | |
| UNIPROTKB|A8QW52 | 376 | EOMT "Eugenol O-methyltransfer | 0.856 | 0.555 | 0.355 | 5.4e-31 | |
| TAIR|locus:2164087 | 378 | AT5G53810 [Arabidopsis thalian | 0.856 | 0.552 | 0.355 | 1.8e-30 | |
| TAIR|locus:2015223 | 381 | AT1G63140 [Arabidopsis thalian | 0.856 | 0.548 | 0.350 | 2.3e-30 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.909 | 0.611 | 0.338 | 2.3e-30 |
| TAIR|locus:2102038 AT3G53140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 156/225 (69%), Positives = 182/225 (80%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M AWPLVH AV++P EP+ K +GE AY+ YGK +MNGLM+KAMS V VPFM ++LDGY
Sbjct: 130 MRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEEMNGLMQKAMSGVSVPFMKAILDGY 189
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
DGFK V LVDVGGSAGDCLR+ILQ+ + EGINFDLPEVVAKAP+IP VTH+GGDMF+
Sbjct: 190 DGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINFDLPEVVAKAPNIPGVTHVGGDMFQ 249
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKWVLTTWTD+ECK IM+N Y AL G KLIACEPVLP +++ES RTRALL
Sbjct: 250 SVPSADAIFMKWVLTTWTDEECKQIMKNCYNALPVGGKLIACEPVLPKETDESHRTRALL 309
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF-ISIIFTL 224
EGDIFVMTIYR KGKH+TE+EF +LG S GFP R F I +T+
Sbjct: 310 EGDIFVMTIYRTKGKHRTEEEFIELGLSAGFPTFRPFYIDYFYTI 354
|
|
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 83/215 (38%), Positives = 129/215 (60%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +A+LD I PF K +G A+ Y+G P+ N + MS M +L+ Y
Sbjct: 135 MESWYHLKDAILDGGI-PFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETY 193
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG G L++I+ K+ + +GINFDLP V+ APS P + H+GGDMF
Sbjct: 194 KGFEGLTSLVDVGGGIGATLKMIVSKYPNL-KGINFDLPHVIEDAPSHPGIEHVGGDMFV 252
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAIFMKW+ W+D+ C ++N Y++L K+I E +LP+ + S T+ ++
Sbjct: 253 SVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVV 312
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
D +M + GK +TE+EF+ L ++GF ++
Sbjct: 313 HVDC-IMLAHNPGGKERTEKEFEALAKASGFKGIK 346
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 80/217 (36%), Positives = 123/217 (56%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G + N + + M V +LD Y
Sbjct: 141 MESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDLY 199
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF +VDVGG G + ++ +H I GIN+DLP V+++AP P V H+GGDMF
Sbjct: 200 TGFDAASTVVDVGGGVGATVAAVVSRHPHI-RGINYDLPHVISEAPPFPGVEHVGGDMFA 258
Query: 121 SI-HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL 179
S+ DAI MKW+L W+D+ C +++N Y AL K++ E VLP+ S+ + R + +
Sbjct: 259 SVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGV 318
Query: 180 LEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216
D+ +M + GK + E+EF++L + GF +A
Sbjct: 319 FHVDM-IMLAHNPGGKERYEREFRELARAAGFTGFKA 354
|
|
| UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 83/225 (36%), Positives = 131/225 (58%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W EAV+D I+ F VHG Y + GK KMN + K+M V M +L+ Y
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 204
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG +G L +I+ K+ I +GINFDLP+V+ AP + + H+GGDMF
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDMFA 263
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DA+ +K V W+D++C + N +KAL K+I E +LP++ N S+ ++ +
Sbjct: 264 SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323
Query: 181 EGD-IFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL----RAFISI 220
D + +T+ G+ +TE+++++L +GF RAF S+
Sbjct: 324 TLDNLMFITV---GGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 365
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 76/215 (35%), Positives = 123/215 (57%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + + M + +L+ Y
Sbjct: 134 MESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVY 192
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ +VDVGG G + I + I +GINFDLP V+++A P VTH+GGDMF+
Sbjct: 193 KGFEGLGTIVDVGGGVGATVGAITAAYPAI-KGINFDLPHVISEAQPFPGVTHVGGDMFQ 251
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
+ DAI MKW+L W+D+ C +++N Y AL A K++ E +LP + + + + +
Sbjct: 252 KVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQGVF 311
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
D+ +M + G+ + E+EF+ L GF ++
Sbjct: 312 HVDM-IMLAHNPGGRERYEREFEALAKGAGFKAIK 345
|
|
| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 77/222 (34%), Positives = 124/222 (55%)
Query: 4 WPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGF 63
W + ++VL+ + PF HG A G + + + +M F+ L Y+GF
Sbjct: 126 WYNLKDSVLEGGL-PFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNGF 184
Query: 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIH 123
GVK LVDVGG G L I+ KH I + INFDLP V+ + P + H+ GDMF +
Sbjct: 185 DGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGIEHVAGDMFTNTP 244
Query: 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGD 183
+AIFMKW+L +W DD C I+ N Y++L + K+I + V+P+ ++ R+L + +
Sbjct: 245 KGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDRSLFQFE 304
Query: 184 IFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA-FISIIFTL 224
+F+M + GK +T++EF+ L GF +++ F S+ F++
Sbjct: 305 LFMMNM-NPSGKERTKKEFEILARLAGFSNVQVPFTSLCFSV 345
|
|
| UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 75/211 (35%), Positives = 114/211 (54%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M W + + VL PF K +G P + Y G MN L +AM+ + +L+ +
Sbjct: 148 METWHNIKDGVLAGET-PFDKAYGMPVFEYLGANGTMNTLFNEAMASHSMIITKRLLEVF 206
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+ LVDVGG G +++I ++ I GIN+DLP V+A+A I V H+ G+MF
Sbjct: 207 RGFENYSVLVDVGGGNGTTMQMIRSQYENI-SGINYDLPHVIAQASPIEGVEHVAGNMFD 265
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
+I DAI +KW+L W D EC I++N Y AL +I E +LP+ E+ ++
Sbjct: 266 NIPRGDAIILKWILHNWGDKECVKILKNCYTALPVNGTVIILEYILPETPEETLASQLAF 325
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
+ D+ +M + A GK +TE+E +L GF
Sbjct: 326 DFDLGMMLFFGASGKERTEKELLELAREAGF 356
|
|
| TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 75/211 (35%), Positives = 110/211 (52%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W + + +L+ + F+ HG + Y + + +AM VL Y
Sbjct: 151 IKTWTHLEDVILEGR-DAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEKVLKFY 209
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
+GFK VK LVDVGG G+ L +I K+ + GINFDL V+A A S P V H+ GDMF
Sbjct: 210 EGFKDVKTLVDVGGGLGNTLGLITSKYPHLI-GINFDLAPVLANAHSYPGVNHVAGDMFI 268
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
I DAIFMKW+L WTD++C I++N +K+L KLI E V P ++ ++
Sbjct: 269 KIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKSGDICSNIV 328
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
G M + GK + EF+ L +++GF
Sbjct: 329 FGMDMTMLTQCSGGKERDLYEFENLAYASGF 359
|
|
| TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 74/211 (35%), Positives = 112/211 (53%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M W + + +L+ + F HG + G + + +AMS M VL+ Y
Sbjct: 154 MKPWEHLKDMILEGK-DAFTSAHGMRFFELIGSNEQFAEMFNRAMSEASTLIMKKVLEVY 212
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+ V LVDVGG G + + K+ I +GINFDL V+A AP V H+ GDMFK
Sbjct: 213 KGFEDVNTLVDVGGGIGTIIGQVTSKYPHI-KGINFDLASVLAHAPFNKGVEHVSGDMFK 271
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
I DAIFMKW+L WTD++C I++NY+K+L K+I E V P++ + + ++
Sbjct: 272 EIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDISSNIV 331
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
G +M + GK ++ +F+ L +GF
Sbjct: 332 FGMDMLMLAVSSGGKERSLSQFETLASDSGF 362
|
|
| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 80/236 (33%), Positives = 126/236 (53%)
Query: 4 WPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGF 63
W + EA+ + + + + + Y K + + ++M+ M +L+ Y GF
Sbjct: 137 WSYLTEAIQEGGASAWERANEALIFEYMKKNENLKKIFNESMTNHTSIVMKKILENYIGF 196
Query: 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIH 123
+GV VDVGGS G L IL K+ I +GINFDLP +V +AP I V HIGGDMF I
Sbjct: 197 EGVSDFVDVGGSLGSNLAQILSKYPHI-KGINFDLPHIVKEAPQIHGVEHIGGDMFDEIP 255
Query: 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQ-RTRALLEG 182
+ I MKW+L W D++C I++N KAL ++I E ++P + +E+ T+ L
Sbjct: 256 RGEVILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMIVPREVSETDLATKNSLSA 315
Query: 183 DIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFSFWILE 238
D+ +M++ + GK +T++EF+ L GF II+ +S+WI+E
Sbjct: 316 DLTMMSL-TSGGKERTKKEFEDLAKEAGFK----LPKIIY-------GAYSYWIIE 359
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00000576001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (358 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 244 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 2e-55 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 2e-55
Identities = 74/205 (36%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ +W + +AV + PF + G P + Y G P+ N + +AM+ M +L+
Sbjct: 38 LESWAHLKDAVREGGP-PFERAFGMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETA 96
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
F G+ LVDVGG G I++ + +GI FDLP V+A APS V +GGD F+
Sbjct: 97 FDFSGLSSLVDVGGGTGALAAAIVRAYPH-IKGIVFDLPHVIADAPSADRVEFVGGDFFE 155
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DAI +KWVL W+D++C I++ Y+AL G K+I E VLP+D ++ T LL
Sbjct: 156 SVPEADAILLKWVLHDWSDEDCVKILKRCYEALPPGGKVIVVEMVLPEDPDDDLETEVLL 215
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQL 205
D+ ++ + GK +TE+E+++L
Sbjct: 216 -LDLNMLVL--NGGKERTEKEWRKL 237
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 244 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.95 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.88 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.86 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.86 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.84 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.83 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.83 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.83 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.82 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.8 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.79 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.78 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.77 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.77 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.74 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.74 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.74 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.74 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.74 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.73 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.73 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.73 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.73 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.72 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.72 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.72 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.7 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.7 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.7 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.69 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.68 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.67 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.66 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.66 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.66 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.65 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.65 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.64 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.64 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.63 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.62 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.62 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.62 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.61 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.61 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.61 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.59 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.58 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.58 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.57 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.55 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.55 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.55 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.53 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.52 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.52 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.51 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.5 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.5 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.49 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.47 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.47 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.46 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.46 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.46 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.45 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.44 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.43 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.43 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.42 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.42 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.41 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.39 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.37 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.37 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.37 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.37 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.34 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.33 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.33 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.32 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.32 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.32 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.31 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.31 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.3 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.3 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.3 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.3 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.29 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.27 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.27 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.24 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.22 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.22 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.21 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.21 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.21 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.2 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.2 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.2 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.2 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.16 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.16 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 99.14 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.14 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.14 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.14 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.11 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.1 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.1 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.09 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.08 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.08 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.08 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.06 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.05 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.04 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.03 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.02 | |
| PLN02366 | 308 | spermidine synthase | 99.0 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.98 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.97 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.95 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.95 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.94 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.92 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.92 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.92 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.9 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.89 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.89 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.86 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.86 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.85 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.83 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.82 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.81 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.79 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.78 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.78 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.77 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.76 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.72 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.71 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.7 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.66 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.65 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.64 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.61 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.61 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.6 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.6 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.58 | |
| PLN02823 | 336 | spermine synthase | 98.58 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.57 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.57 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.56 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.56 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.55 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.53 | |
| PLN02476 | 278 | O-methyltransferase | 98.51 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.5 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.5 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.48 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.48 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.46 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.44 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.44 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.44 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.42 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.39 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.38 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.36 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.36 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.35 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.35 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.33 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.31 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.3 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.3 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 98.3 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.3 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.25 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.23 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.23 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.22 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.19 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.18 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.17 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.16 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.13 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.13 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.11 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.07 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.03 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.98 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.98 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.97 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.92 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.9 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.85 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.84 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.84 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.8 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.76 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.75 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.72 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.72 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.71 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.7 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.68 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.65 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.65 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.62 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.59 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.57 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.55 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.53 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.53 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.49 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.49 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.45 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.41 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.38 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.34 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.34 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.31 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.31 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.28 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.22 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.14 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.1 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.04 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.03 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.97 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.95 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.87 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.8 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.77 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.65 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.64 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.61 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.59 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.58 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.54 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.51 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.47 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.41 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.4 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.38 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.38 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.33 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.26 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.25 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 96.25 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.19 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.11 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 95.97 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.87 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.84 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.76 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.73 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.56 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.54 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.48 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.4 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.35 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 95.07 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.94 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.54 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.37 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.99 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.35 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.28 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.19 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.08 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 92.79 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 92.69 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 92.59 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.5 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.38 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 92.22 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.05 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 91.78 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 91.61 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.56 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 91.37 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 90.7 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 90.38 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.0 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 88.68 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 87.86 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 87.8 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 87.54 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 87.37 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 87.33 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 87.22 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 86.3 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 85.43 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 85.22 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 85.16 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 84.77 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 84.72 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 84.65 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 84.61 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 84.57 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 83.41 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 83.35 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 82.97 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 82.84 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 82.59 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 82.2 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 81.79 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 81.7 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 80.93 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 80.54 | |
| PRK13699 | 227 | putative methylase; Provisional | 80.54 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=257.83 Aligned_cols=201 Identities=31% Similarity=0.513 Sum_probs=178.5
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccch-HHHhccCCCCCCcceEEEEcCCccHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFM-TSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~l~~~~~~~~~~~~vLDvG~G~G~~~ 80 (244)
.+|.+|.+++++|+ ++++..+|.++|+++..+++..+.|+++|...+.... ..+...++ +++..+|||||||+|.++
T Consensus 38 ~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~ 115 (241)
T PF00891_consen 38 PAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFA 115 (241)
T ss_dssp HGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHH
T ss_pred HHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHH
Confidence 57999999999999 9999999999999999999999999999999888777 77888898 999999999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCC--CE
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAG--RK 158 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg--G~ 158 (244)
..+++++|+++ ++++|+|.+++.+++.+||+++.||+++++|.+|+|+++++||+|+++++.++|++++++|+|| |+
T Consensus 116 ~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 116 IALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp HHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEE
T ss_pred HHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCe
Confidence 99999999999 9999999999998888999999999998899999999999999999999999999999999999 99
Q ss_pred EEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 159 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 159 lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|+|+|.+.++....+........+|+.|+. ..+|++||.+||++|++
T Consensus 195 llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEEEWEALLK 241 (241)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHHHHHHHHH
T ss_pred EEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHHHHHHHhC
Confidence 999999999886655443233578999998 66799999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=231.89 Aligned_cols=226 Identities=35% Similarity=0.600 Sum_probs=202.7
Q ss_pred CCChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHH
Q 041308 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 1 ~~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 80 (244)
++.|.+|.++++.|. .++..++|..++++...++.....|++.|........+.+.+.+.+|++....+|||+|.|..+
T Consensus 114 ~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~ 192 (342)
T KOG3178|consen 114 MNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVL 192 (342)
T ss_pred hhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHH
Confidence 468999999999999 8999999988999999999999999999999999988889999988899999999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCC-CCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEE
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSI-PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKL 159 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~-~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~l 159 (244)
..++..+|+++ ++.+|+|.+++.+... +.|+.+.||+|++.|.+|+|++.++||||+|+++.++|+||++.|+|||++
T Consensus 193 k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkI 271 (342)
T KOG3178|consen 193 KNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKI 271 (342)
T ss_pred HHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999 9999999999999987 889999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCC-CCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 160 IACEPVLPDD-SNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 160 ii~d~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
+++|.+.++. ...........-+|+.|+. ...+|.+|+.+|++.++.++||.+..+......+.++-..
T Consensus 272 iv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~ 341 (342)
T KOG3178|consen 272 IVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFH 341 (342)
T ss_pred EEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHHHHhcchhhcCceeEEEeccCccchheeC
Confidence 9999988852 2222223445678888888 6677999999999999999999999998877766655443
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=198.74 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=144.6
Q ss_pred ChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHH
Q 041308 3 AWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRI 82 (244)
Q Consensus 3 ~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~ 82 (244)
.|.+|.+++|+ + +++....+.+ ...+.....+...+........+.+++.++ +++..+|||||||+|.+++.
T Consensus 95 ~~~~l~~~~r~-~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~ 166 (306)
T TIGR02716 95 FYMGLSQAVRG-Q-KNFKGQVPYP-----PVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAA 166 (306)
T ss_pred HHHhHHHHhcC-C-cccccccCCC-----CCCHHHHHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHH
Confidence 48999999984 4 3443322211 112222223333333444445566778887 88889999999999999999
Q ss_pred HHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHHHcC
Q 041308 83 ILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYKALL 154 (244)
Q Consensus 83 l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~ 154 (244)
+++++|+++ ++++|.|.+++.++++ +|++++.+|+++. +|.+|+|++.+++|+++++.+.++|++++++|+
T Consensus 167 ~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~ 245 (306)
T TIGR02716 167 MLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR 245 (306)
T ss_pred HHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcC
Confidence 999999999 9999999899887642 6899999999874 777899999999999999988999999999999
Q ss_pred CCCEEEEecccCCCCCCchHHhhhhhc-ccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 155 AGRKLIACEPVLPDDSNESQRTRALLE-GDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 155 pgG~lii~d~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
|||+++|.|.+.++... +........ ....+.. .-...++.++|.++|+++||+.+++
T Consensus 246 pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 246 SGGRLLILDMVIDDPEN-PNFDYLSHYILGAGMPF---SVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred CCCEEEEEEeccCCCCC-chhhHHHHHHHHccccc---ccccCCCHHHHHHHHHHcCCCeeEe
Confidence 99999999988765432 222111111 1111110 1112345799999999999998765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=157.94 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=129.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
+.+.++.... ..++.+|||||||||..+..+++..+..+ ++++|. +.|++.++++ ..|+|+.+|+.+. +|
T Consensus 39 Wr~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~ 116 (238)
T COG2226 39 WRRALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC
Confidence 3455666665 45789999999999999999999999888 999999 9999999874 2389999999874 77
Q ss_pred cc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh-hhh--hh--------
Q 041308 124 VV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF-VMT--IY-------- 190 (244)
Q Consensus 124 ~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~-~~~--~~-------- 190 (244)
+. |+|++++.|+++++. .++|++++|+|||||++++.|...+..+. .......+... .+- +.
T Consensus 117 D~sFD~vt~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~ 191 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPV---LRKAYILYYFKYVLPLIGKLVAKDAEA 191 (238)
T ss_pred CCccCEEEeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchh---hHHHHHHHHHHhHhhhhceeeecChHH
Confidence 74 999999999999986 48999999999999999999998776632 11111111111 110 00
Q ss_pred -----ccCceecCHHHHHHHHHhCCCCeEEEEEccce-eEEEeecC
Q 041308 191 -----RAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF-TLFLSSKS 230 (244)
Q Consensus 191 -----~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~~~~~~ 230 (244)
...-...+.+++.++++++||+.+..+....+ ..+..+.|
T Consensus 192 y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 192 YEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 00112347889999999999999997776554 44555544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-22 Score=162.58 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=85.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~ 122 (244)
+.+.+++... ..++.+|||+|||||..+..++++. |+.+ ++++|. +.|++.++++ .+|+++.+|+.+. +
T Consensus 35 wr~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 35 WRRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp --SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 3344555554 5677899999999999999999875 5678 999999 9999999853 5899999999774 6
Q ss_pred Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh-hccc-HhhhhhhccC-----
Q 041308 123 HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL-LEGD-IFVMTIYRAK----- 193 (244)
Q Consensus 123 p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~-~~~d-~~~~~~~~~~----- 193 (244)
++ .|+|++.+.+|++++. .+.+++++|+|||||+++|+|...+.. +...... .++. +....+....
T Consensus 113 ~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~---~~~~~~~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRN---PLLRALYKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SS---HHHHHHHHH-------------------
T ss_pred CCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCC---chhhceeeeeeccccccccccccccccc
Confidence 65 4999999999999986 478999999999999999999987765 2221111 1111 0000000000
Q ss_pred --------ceecCHHHHHHHHHhCCCCeEEEEEcccee
Q 041308 194 --------GKHKTEQEFKQLGFSTGFPHLRAFISIIFT 223 (244)
Q Consensus 194 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 223 (244)
....+.+++.++++++||+.++.+....+.
T Consensus 188 Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~ 225 (233)
T PF01209_consen 188 YRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGI 225 (233)
T ss_dssp --------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 122377899999999999999987776543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=154.65 Aligned_cols=160 Identities=20% Similarity=0.159 Sum_probs=117.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCC-CCc--ceEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~-~p~--~D~v 128 (244)
..+..+|||+|||||.++..++++. |..+ ++++|+ ++|++.|+++ ++++++.+|+.+. ++. .|+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 5667899999999999999998875 5678 999999 9999988642 4789999998763 655 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc-cHh--hhh-hh----------ccCc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG-DIF--VMT-IY----------RAKG 194 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~-d~~--~~~-~~----------~~~~ 194 (244)
++.+++|++++. .+++++++|+|||||++++.|...++....+ ....++ ... ... .. ..-.
T Consensus 150 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 150 TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 999999999875 5889999999999999999998765432111 110110 000 000 00 0012
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEcccee-EEEee
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISIIFT-LFLSS 228 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~~~~~ 228 (244)
..++.+++.++++++||+.++.....++. .+.++
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 35689999999999999999988876543 34443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-21 Score=156.79 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=112.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCcceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHVVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~ 132 (244)
.+..+|||+|||+|.++..+++.. |+.+ ++++|+ +.|++.|+++ .+++++.+|+.+. ++..|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 466799999999999999999874 7888 999999 9999988753 4789999999765 56679999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh-h------------hccCceecCH
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT-I------------YRAKGKHKTE 199 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~-~------------~~~~~~~~t~ 199 (244)
++||+++++...++++++++|+|||.+++.|.+.+++...... ........... . ....-...|.
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL--LIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999998888899999999999999999999876654221110 00000000000 0 0011235689
Q ss_pred HHHHHHHHhCCCCeEEE
Q 041308 200 QEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~ 216 (244)
+++.+++++|||+.+++
T Consensus 209 ~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 209 ETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHcCCchHHH
Confidence 99999999999996654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=152.01 Aligned_cols=178 Identities=16% Similarity=0.225 Sum_probs=123.7
Q ss_pred CchHHHHHHHHHHcccccc------hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH--cCCCCeEEEeec-hHHHHh
Q 041308 34 KPKMNGLMRKAMSRVFVPF------MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK--HCFICEGINFDL-PEVVAK 104 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~------~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~~D~-~~~i~~ 104 (244)
+...++.|++......... +..+++.+ .++..+|||||||+|..+..+++. .|+.+ ++++|. +.|++.
T Consensus 21 ~~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~--~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~ 97 (247)
T PRK15451 21 DERVAEVFPDMIQRSVPGYSNIISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIER 97 (247)
T ss_pred ChHHHHhhhhHHHhcCCChHHHHHHHHHHHHHh--CCCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHH
Confidence 3455567776654333211 11222222 346689999999999999999884 58889 999999 999999
Q ss_pred CCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCC-chHH
Q 041308 105 APSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN-ESQR 175 (244)
Q Consensus 105 a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~-~~~~ 175 (244)
++++ .+++++.+|+.+. ++..|+|++..++||+++++...++++++++|||||.+++.|.+..+... .+..
T Consensus 98 A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~ 177 (247)
T PRK15451 98 CRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL 177 (247)
T ss_pred HHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHH
Confidence 8763 4799999998764 45579999999999999888889999999999999999999977654422 1111
Q ss_pred hhhhhcccHhhhhhh-----------ccC-ceecCHHHHHHHHHhCCCCeEEE
Q 041308 176 TRALLEGDIFVMTIY-----------RAK-GKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 176 ~~~~~~~d~~~~~~~-----------~~~-~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
.. .+.+.....++ ..+ -...+.++..++|++|||+.+.+
T Consensus 178 ~~--~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 178 FN--MHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred HH--HHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 11 01111000000 001 12348899999999999997654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=147.48 Aligned_cols=170 Identities=11% Similarity=0.092 Sum_probs=124.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ .++..+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++++ ++++++.+|..+. ++
T Consensus 34 ~~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 34 RKDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 345666666 6777899999999999999999885 5678 999999 9998877642 5799999998764 45
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccH----------------h
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDI----------------F 185 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~----------------~ 185 (244)
. .|+|++.+++|++++. .++++++.++|+|||++++.+...+... .+.......+.. .
T Consensus 112 ~~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 187 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYS 187 (231)
T ss_pred CCCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHH
Confidence 4 4999999999998876 4889999999999999999887544331 111000000000 0
Q ss_pred hhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc-ceeEEEeecC
Q 041308 186 VMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI-IFTLFLSSKS 230 (244)
Q Consensus 186 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~~~~~~ 230 (244)
... .......+.++++++++++||+.+++.... ++...+++.|
T Consensus 188 ~~~--~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 188 WLQ--ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHH--HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 000 011234578999999999999999998877 5666776654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=150.21 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=120.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~-- 124 (244)
.+.+++.++ +++..+|||||||+|..+..+++.+ ..+ ++++|+ +.+++.++++ .++.++.+|+.+. +|.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 455777776 7888999999999999999998764 567 999999 9998888753 5799999999764 664
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..+++|++.++...++++++++|||||++++.|....... .+...... ... .......+.+++.+
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~~~~~~~~-----~~~--~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--NWDEEFKA-----YIK--KRKYTLIPIQEYGD 188 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--CcHHHHHH-----HHH--hcCCCCCCHHHHHH
Confidence 4999999999999876678999999999999999999998665431 11111100 011 11223458899999
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
+++++||+.+...+..
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999988764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=147.73 Aligned_cols=171 Identities=16% Similarity=0.115 Sum_probs=118.2
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM 118 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~ 118 (244)
.|.+........ ...+++.++ ..+..+|||+|||+|.++..+++++|+.+ ++++|+ +.|++.+++ .+++++.+|+
T Consensus 6 ~y~~~~~~~~~~-~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~-~~~~~~~~d~ 81 (255)
T PRK14103 6 VYLAFADHRGRP-FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARE-RGVDARTGDV 81 (255)
T ss_pred HHHHHHhHhhCH-HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHh-cCCcEEEcCh
Confidence 344443333333 356777776 67779999999999999999999999888 999999 999999876 4789999998
Q ss_pred CCCCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh---hcccHh-hhhhhcc
Q 041308 119 FKSIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL---LEGDIF-VMTIYRA 192 (244)
Q Consensus 119 ~~~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~ 192 (244)
.+..+. .|+|+++.++||+++. .+++++++++|||||++++.................. .+.... ... ...
T Consensus 82 ~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~ 158 (255)
T PRK14103 82 RDWKPKPDTDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIP-FRV 158 (255)
T ss_pred hhCCCCCCceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccc-ccc
Confidence 654332 5999999999999875 5889999999999999998743211110000000000 010000 000 011
Q ss_pred CceecCHHHHHHHHHhCCCCeEEEE
Q 041308 193 KGKHKTEQEFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 193 ~~~~~t~~e~~~ll~~aGf~~~~~~ 217 (244)
+....+.+++.++|+++||++...+
T Consensus 159 ~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred CcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 2344689999999999999865444
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=150.29 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=115.6
Q ss_pred hHHHhccCCCC-----CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCC
Q 041308 53 MTSVLDGYDGF-----KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMF 119 (244)
Q Consensus 53 ~~~l~~~~~~~-----~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~ 119 (244)
.+.+++... . ++..+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.
T Consensus 102 ~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 344555554 4 567899999999999999999887 567 999999 9998877642 57999999997
Q ss_pred CC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc--hHHhhhhhcccHhhhhhhccCc
Q 041308 120 KS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 120 ~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
+. ++. .|+|++..++||+++. .+++++++++|||||++++.++........ .........++..... ....
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~p 254 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA--YYLP 254 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh--ccCC
Confidence 64 554 4999999999999875 589999999999999999998754322110 0000000111111111 0111
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+.+++.++++++||..+++.+..
T Consensus 255 ~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 255 AWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 23478999999999999999988765
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-19 Score=149.51 Aligned_cols=149 Identities=23% Similarity=0.239 Sum_probs=114.1
Q ss_pred HHhccCCCC-CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ce
Q 041308 55 SVLDGYDGF-KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 55 ~l~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D 126 (244)
.+++... + .+..+|||||||+|.++..+++..+..+ ++++|. +.|++.++++ .+++++.+|+.+. ++. .|
T Consensus 103 ~~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFD 180 (340)
T PLN02490 103 DALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYAD 180 (340)
T ss_pred HHHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCcee
Confidence 3455444 3 3567999999999999999998887778 999999 9999988764 5789999998764 444 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLG 206 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll 206 (244)
+|++..++|++++.+ .+|++++++|||||++++.+...+.. +..+ ...+..+ ...+.+++.+++
T Consensus 181 vVIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~--------~~~t~eEl~~lL 244 (340)
T PLN02490 181 RYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM--------LFPKEEEYIEWF 244 (340)
T ss_pred EEEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc--------cCCCHHHHHHHH
Confidence 999999999999874 78999999999999999987644321 1111 1111111 125789999999
Q ss_pred HhCCCCeEEEEEccc
Q 041308 207 FSTGFPHLRAFISII 221 (244)
Q Consensus 207 ~~aGf~~~~~~~~~~ 221 (244)
+++||+.+++..+..
T Consensus 245 ~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 245 TKAGFKDVKLKRIGP 259 (340)
T ss_pred HHCCCeEEEEEEcCh
Confidence 999999999877643
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=152.99 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=119.5
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-- 124 (244)
+.+++.+. +++..+|||||||+|..+..+++.. +.+ ++++|+ +.+++.|+++ .++++..+|+.+. +|.
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 44677776 6777899999999999999998765 678 999999 8999888643 5799999999875 554
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..+++|+++. .+++++++++|||||++++.+.........+.. ... .. ..+....+.+++.+
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~------~~~--~~--~~g~~~~~~~~~~~ 400 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF------AEY--IK--QRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH------HHH--HH--hcCCCCCCHHHHHH
Confidence 4999999999999876 488999999999999999998866543211111 011 11 22345678999999
Q ss_pred HHHhCCCCeEEEEEccc
Q 041308 205 LGFSTGFPHLRAFISII 221 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~ 221 (244)
+++++||.++.+.+...
T Consensus 401 ~l~~aGF~~i~~~d~~~ 417 (475)
T PLN02336 401 MLKDAGFDDVIAEDRTD 417 (475)
T ss_pred HHHHCCCeeeeeecchH
Confidence 99999999998876554
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=134.01 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=117.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC------CCeEEEeec-hHHHHhCCCC---------CCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF------ICEGINFDL-PEVVAKAPSI---------PEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~~D~-~~~i~~a~~~---------~~i~~~~g 116 (244)
-+..+..+. .....++||++||||.++-.+++..+. .+ ++++|+ |+|++.++++ .++.++++
T Consensus 89 Kd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 89 KDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 344555665 445589999999999999999998766 56 999999 9999988753 45899999
Q ss_pred CCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhh-hhh---
Q 041308 117 DMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFV-MTI--- 189 (244)
Q Consensus 117 d~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~-~~~--- 189 (244)
|..+. +|. .|.+++.+-+.++++.+ +.|++++|+|||||++.+.|.-.-+.+.-.+... +..++... +.-
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~ia 243 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIA 243 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhh
Confidence 99764 776 49999999999999874 8899999999999999999985443211111111 11122110 000
Q ss_pred -------h--ccCceecCHHHHHHHHHhCCCCeEE-EEEccc
Q 041308 190 -------Y--RAKGKHKTEQEFKQLGFSTGFPHLR-AFISII 221 (244)
Q Consensus 190 -------~--~~~~~~~t~~e~~~ll~~aGf~~~~-~~~~~~ 221 (244)
+ ..-.+..+.++++.+.++|||+.+. .+....
T Consensus 244 gd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~ 285 (296)
T KOG1540|consen 244 GDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLTF 285 (296)
T ss_pred hhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccccccccee
Confidence 0 0012334788999999999999987 544433
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-17 Score=133.63 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=123.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-C
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-I 122 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~ 122 (244)
...+++.+. ..+..+|||+|||+|.++..+++.+| ..+ ++++|. +.+++.+++. .++++..+|+.+. .
T Consensus 40 ~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 40 RRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 344566665 55668999999999999999999987 678 999999 8888877753 4689999998764 3
Q ss_pred Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh---hhccC----
Q 041308 123 HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT---IYRAK---- 193 (244)
Q Consensus 123 p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~---- 193 (244)
+. .|+|++.+++|++++. ..+++++.+.|+|||++++.+...+.... .............. ....+
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CCCCccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHH
Confidence 33 4999999999998875 58899999999999999999886654321 10000000000000 00000
Q ss_pred --------ceecCHHHHHHHHHhCCCCeEEEEEcc-ceeEEEeecCc
Q 041308 194 --------GKHKTEQEFKQLGFSTGFPHLRAFISI-IFTLFLSSKSN 231 (244)
Q Consensus 194 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~~~~~~~ 231 (244)
...++.++|.++++++||+.+++.... +-..++.++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 123578899999999999999998864 45567776654
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=130.75 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=107.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~- 124 (244)
..+++.++ ..+..+|||+|||+|..+..++++. .+ ++++|+ +.+++.+++. .++++..+|+.+. ++.
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~g--~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANG--FD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHCC--CE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 34666666 5556899999999999999999863 46 999999 9999887753 4588888998664 444
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++|++++++...++++++++|+|||++++.+....+....+ ......++.+|+.+
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~el~~ 158 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRR 158 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-----------------CCCCCccCHHHHHH
Confidence 5999999999999988889999999999999999877665433221000 00012357889999
Q ss_pred HHHhCCCCeEEEEE
Q 041308 205 LGFSTGFPHLRAFI 218 (244)
Q Consensus 205 ll~~aGf~~~~~~~ 218 (244)
+++ ||+++....
T Consensus 159 ~~~--~~~~~~~~~ 170 (197)
T PRK11207 159 YYE--GWEMVKYNE 170 (197)
T ss_pred HhC--CCeEEEeeC
Confidence 996 899888744
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-17 Score=131.04 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=121.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~-- 124 (244)
+.+++.+. ..+..+|||+|||+|.++..+++.+|. .+ ++++|+ +.+++.++++ .++++..+|+.+. .+.
T Consensus 29 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34555554 456789999999999999999999986 67 999999 8888877653 5789999999764 433
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh----h--cc------
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----Y--RA------ 192 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~----~--~~------ 192 (244)
.|+|++..++|+.++. ..+++++.+.|+|||++++.+...+... +.... .......++.. . ..
T Consensus 107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA--LLKKF-YKFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch--hhHHH-HHHHHHHhhhhhhhhhcCCchhhHHH
Confidence 4999999999998875 5889999999999999999987544321 11100 00000000000 0 00
Q ss_pred ---CceecCHHHHHHHHHhCCCCeEEEEEccce-eEEEeecC
Q 041308 193 ---KGKHKTEQEFKQLGFSTGFPHLRAFISIIF-TLFLSSKS 230 (244)
Q Consensus 193 ---~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~~~~~~ 230 (244)
.....+.++|.++++++||+.+++++.... ..++++++
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 012347889999999999999999888765 45555553
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=139.69 Aligned_cols=163 Identities=12% Similarity=-0.003 Sum_probs=114.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.++ ++++.+|||||||-|.++..+++++ +++ ++++.+ ++..+.+++. +++++...|+.+.-+.
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 456888888 9999999999999999999999998 788 999999 8887776532 6899999998654345
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|.|++.-++.|+..++...+++++.+.|||||++++...+..+.. .........+..... ..++|...+..++..
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~---~~~~~~~~~~~i~ky-iFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPP---YHAERRSSSDFIRKY-IFPGGYLPSLSEILR 203 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HH---HHHCTTCCCHHHHHH-TSTTS---BHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccccc---chhhcCCCceEEEEe-eCCCCCCCCHHHHHH
Confidence 6999999999999988888999999999999999999877765431 111000011211111 257888889999999
Q ss_pred HHHhCCCCeEEEEEccce
Q 041308 205 LGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~ 222 (244)
.++++||++..+.....+
T Consensus 204 ~~~~~~l~v~~~~~~~~h 221 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLGRH 221 (273)
T ss_dssp HHHHTT-EEEEEEE-HHH
T ss_pred HHhcCCEEEEEEEEcCcC
Confidence 999999999999887543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=141.18 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=113.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-------CCCeeEEeCCCCCC-CCc-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-------IPEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-------~~~i~~~~gd~~~~-~p~-~ 125 (244)
+...++ ...+.+|||||||+|.++..+++.++. + ++++|. +.++..++. ..+++++.+|+.+. .+. .
T Consensus 114 l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 444554 234589999999999999999988764 6 999999 766653321 25799999988553 333 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC-ceecCHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-GKHKTEQEFKQ 204 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~t~~e~~~ 204 (244)
|+|++..++||..+. ..+|++++++|+|||.+++.+.+.+........ ....+.. ..+ -..+|.+++.+
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~-p~~~y~~-------~~~~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLV-PGDRYAK-------MRNVYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccC-chhHHhc-------CccceeCCCHHHHHH
Confidence 999999999998876 478999999999999999876655543221100 0000000 011 12358899999
Q ss_pred HHHhCCCCeEEEEEccceeEEEeecCchhHH
Q 041308 205 LGFSTGFPHLRAFISIIFTLFLSSKSNFSFW 235 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~~ 235 (244)
+++++||+.+++.+..... ..+...+-|
T Consensus 261 ~L~~aGF~~i~~~~~~~t~---~~eqr~t~w 288 (322)
T PRK15068 261 WLERAGFKDVRIVDVSVTT---TEEQRKTEW 288 (322)
T ss_pred HHHHcCCceEEEEeCCCCC---ccccccccC
Confidence 9999999999998765432 334444444
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=134.45 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=109.4
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~ 136 (244)
.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.++++ +++++..+|+.+. .+. .|+|++..++||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHh
Confidence 3799999999999999999998888 999999 8888877752 5789999998654 444 599999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
+.+. ..++++++++|||||++++.+...+... +... + .......+.++|.++++++||++++.
T Consensus 80 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~------~-------~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 80 IKDK--MDLFSNISRHLKDGGHLVLADFIANLLS--AIEH------E-------ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCCH--HHHHHHHHHHcCCCCEEEEEEcccccCc--cccc------c-------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 9875 5899999999999999999987533211 0000 0 01112457899999999999999998
Q ss_pred EEcccee
Q 041308 217 FISIIFT 223 (244)
Q Consensus 217 ~~~~~~~ 223 (244)
.++...+
T Consensus 143 ~~~~~~~ 149 (224)
T smart00828 143 VDASLEI 149 (224)
T ss_pred EECcHhH
Confidence 8875443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=120.70 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=83.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCC-CCC--CCcceEEEecc-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDM-FKS--IHVVDAIFMKW- 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~-~~~--~p~~D~v~~~~- 132 (244)
+..+|||+|||+|.++..+++.+|..+ ++++|. |.+++.++++ ++++++.+|+ ... .+..|+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 357999999999999999999899999 999999 9999888753 7999999999 332 33469999999
Q ss_pred ccccCCH-HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTD-DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+|++.+ ++..++++++++.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6665443 577899999999999999999865
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=131.88 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=110.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--~D~v 128 (244)
...+++.++ .++..+|||||||+|.++..+++.+|..+ ++++|+ +.|++.+++. +++++..+|+.+..+. .|+|
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 456777776 77789999999999999999999998888 999999 9999999865 7899999998654332 5999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh--hcccHhhhhhhcc---CceecCHHHHH
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL--LEGDIFVMTIYRA---KGKHKTEQEFK 203 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~---~~~~~t~~e~~ 203 (244)
+++.++|++++. ..++++++++|||||++++.-. +....+...... .....+....... .....+..++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 172 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMP---DNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYY 172 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCCCcEEEEECC---CCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHH
Confidence 999999999875 4889999999999999998532 111111100000 0000001000001 12335778899
Q ss_pred HHHHhCCCCe
Q 041308 204 QLGFSTGFPH 213 (244)
Q Consensus 204 ~ll~~aGf~~ 213 (244)
+++.++|+.+
T Consensus 173 ~~l~~~g~~v 182 (258)
T PRK01683 173 DALAPAACRV 182 (258)
T ss_pred HHHHhCCCce
Confidence 9999999874
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=126.20 Aligned_cols=137 Identities=22% Similarity=0.252 Sum_probs=97.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~ 138 (244)
..+..+|||+|||+|.++..+.+... + ++++|+ +.+++. ..+....-+.... .+. .|+|++..++||++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 45678999999999999999976644 6 999999 889887 2222222211122 222 49999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+. ..+|+++.+.|||||++++.+...... .......+ ..... .......++.++|+++++++||++++
T Consensus 93 d~--~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DP--EEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKW-RYDRP--YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHC-CGTCH--HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhc-CCcCc--cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 74 689999999999999999999865321 11111111 11111 01345778999999999999999876
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=138.74 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=112.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-------CCCCeeEEeCCCCCC--CCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-------SIPEVTHIGGDMFKS--IHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-------~~~~i~~~~gd~~~~--~p~ 124 (244)
.++..+. ..++.+|||||||+|.++..++..++. + ++++|. +.|+..++ ...++.+..+++.+. ...
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3555554 344589999999999999999987664 6 999999 77765432 125788888877443 223
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++||+.+. ..+|++++++|||||.|++.+...+.......... .. ...+.. .-...+.+++..
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~r--y~k~~n----v~flpS~~~L~~ 259 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DR--YAKMKN----VYFIPSVSALKN 259 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HH--HHhccc----cccCCCHHHHHH
Confidence 5999999999999876 47899999999999999998766543321110000 00 000000 012357899999
Q ss_pred HHHhCCCCeEEEEEccceeEEEeecCchhHHH
Q 041308 205 LGFSTGFPHLRAFISIIFTLFLSSKSNFSFWI 236 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (244)
+++++||+.+++........ .+...+-|.
T Consensus 260 ~L~~aGF~~V~i~~~~~tt~---~eqr~t~w~ 288 (314)
T TIGR00452 260 WLEKVGFENFRILDVLKTTP---EEQRKTDWI 288 (314)
T ss_pred HHHHCCCeEEEEEeccCCCH---HHhhhhhhh
Confidence 99999999999877654321 244455553
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=135.11 Aligned_cols=162 Identities=17% Similarity=0.088 Sum_probs=111.2
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--CCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--IHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~p~ 124 (244)
.+++.++ ++..+|||+|||+|.++..+++.. .+ ++++|+ +.|++.|+++ ++++++.+|+.+. .+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g--~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELG--HQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 4555554 455799999999999999999874 46 999999 9999988753 5789999998543 232
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh---hh---hhhccCcee
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF---VM---TIYRAKGKH 196 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~---~~---~~~~~~~~~ 196 (244)
.|+|++..++||++++ ..+++++.++|||||++++........ ..........+.. +. .....-...
T Consensus 111 ~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 185 (255)
T PRK11036 111 TPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDYP 185 (255)
T ss_pred CCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCCC
Confidence 4999999999999876 478999999999999999875532210 0000000000000 00 000001234
Q ss_pred cCHHHHHHHHHhCCCCeEEEEEccceeEEE
Q 041308 197 KTEQEFKQLGFSTGFPHLRAFISIIFTLFL 226 (244)
Q Consensus 197 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~ 226 (244)
.+.+++.++++++||+++...-+....-++
T Consensus 186 ~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~ 215 (255)
T PRK11036 186 LDPEQVYQWLEEAGWQIMGKTGVRVFHDYL 215 (255)
T ss_pred CCHHHHHHHHHHCCCeEeeeeeEEEEeecc
Confidence 578999999999999999877665444333
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=131.20 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=113.7
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-- 124 (244)
.+.+.++ +.+..+|||+|||+|.++..+++.+ |..+ ++++|. +.+++.+++. .++++..+|+.+. ++.
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3555565 7778999999999999999999987 6778 999999 8888877653 6789999998653 443
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch-HHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++.++++|+++. ..+++++.++|+|||++++.+.........+ ............. .......+..++.
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 161 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS----DHFADPWLGRRLP 161 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH----hcCCCCcHHHHHH
Confidence 4999999999999876 4789999999999999999886432210000 0000011111111 1122334567899
Q ss_pred HHHHhCCCCeEEEEEcc
Q 041308 204 QLGFSTGFPHLRAFISI 220 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~ 220 (244)
++++++||..+.+....
T Consensus 162 ~~l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 162 GLFREAGLTDIEVEPYT 178 (241)
T ss_pred HHHHHcCCCceeEEEEE
Confidence 99999999988876643
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=138.90 Aligned_cols=146 Identities=9% Similarity=-0.053 Sum_probs=105.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
+..+|||||||+|.++..+++. +.+ ++++|. +.+++.|++. .+++++.+|+.+. .+. .|+|++..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4469999999999999988863 567 999999 9999988743 3789999987543 332 599999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC----ceecCHHHHHHHHHhC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHKTEQEFKQLGFST 209 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~t~~e~~~ll~~a 209 (244)
+||+++.. .++++++++|||||.+++........ .+.........+.... ..+ ...++.+++.++++++
T Consensus 208 LeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~l--p~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 208 IEHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWL--PKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcC--CCCCcCccCCCCHHHHHHHHHHc
Confidence 99999874 89999999999999999987633211 0000000000011111 111 2357899999999999
Q ss_pred CCCeEEEEEcc
Q 041308 210 GFPHLRAFISI 220 (244)
Q Consensus 210 Gf~~~~~~~~~ 220 (244)
||+++++..+.
T Consensus 281 Gf~i~~~~G~~ 291 (322)
T PLN02396 281 SVDVKEMAGFV 291 (322)
T ss_pred CCeEEEEeeeE
Confidence 99999885543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=133.71 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=110.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~--~D~v~~~ 131 (244)
+++..+|||+|||+|..+..+++. .+..+ ++++|. +.+++.++++ +++++..+|+.+. ++. .|+|++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 567889999999999988877766 45567 999999 9999998863 6889999998663 444 4999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.++|++++. .+++++++++|||||++++.+....... +.. ...+..+.. ...+...+.+++.++++++||
T Consensus 154 ~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~--~~~----~~~~~~~~~--~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 154 CVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL--PEE----IRNDAELYA--GCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred CcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC--CHH----HHHhHHHHh--ccccCCCCHHHHHHHHHHCCC
Confidence 999998765 4789999999999999999987654321 111 111222221 122445678999999999999
Q ss_pred CeEEEEE
Q 041308 212 PHLRAFI 218 (244)
Q Consensus 212 ~~~~~~~ 218 (244)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9987744
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=124.09 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------
Q 041308 36 KMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------ 108 (244)
Q Consensus 36 ~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------ 108 (244)
.....|++.|+.+.+.++..+-..+- -+....+|+||||||..-...-- -|..+ +|++|. +.|.+.+.+.
T Consensus 48 ~ft~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkfy~~-~p~~s-vt~lDpn~~mee~~~ks~~E~k~ 124 (252)
T KOG4300|consen 48 NFTSIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKFYPW-KPINS-VTCLDPNEKMEEIADKSAAEKKP 124 (252)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCcccccC-CCCce-EEEeCCcHHHHHHHHHHHhhccC
Confidence 34557888888876554444332221 34557889999999988765442 36778 999999 9888777642
Q ss_pred CCee-EEeCCCCCC--CCcc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhccc
Q 041308 109 PEVT-HIGGDMFKS--IHVV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGD 183 (244)
Q Consensus 109 ~~i~-~~~gd~~~~--~p~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d 183 (244)
.++. |+.++..+. ++++ |+|++..+|.-..++ .+.|++++|+|||||+++++|.+..+.. .+..-++...+
T Consensus 125 ~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~--~k~L~e~~rlLRpgG~iifiEHva~~y~--~~n~i~q~v~e 200 (252)
T KOG4300|consen 125 LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDP--VKQLNEVRRLLRPGGRIIFIEHVAGEYG--FWNRILQQVAE 200 (252)
T ss_pred cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCH--HHHHHHHHHhcCCCcEEEEEecccccch--HHHHHHHHHhc
Confidence 5566 888877543 4554 999999999766664 6899999999999999999999877653 34434445555
Q ss_pred HhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEE
Q 041308 184 IFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFL 226 (244)
Q Consensus 184 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~ 226 (244)
-.... ...|+..|.+.|+. +++|-|+..+.+....+..+.
T Consensus 201 p~~~~--~~dGC~ltrd~~e~-Leda~f~~~~~kr~~~~ttw~ 240 (252)
T KOG4300|consen 201 PLWHL--ESDGCVLTRDTGEL-LEDAEFSIDSCKRFNFGTTWV 240 (252)
T ss_pred hhhhe--eccceEEehhHHHH-hhhcccccchhhcccCCceEE
Confidence 43333 56688888776655 589999999987776655544
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-17 Score=127.30 Aligned_cols=137 Identities=22% Similarity=0.270 Sum_probs=100.4
Q ss_pred CCcceEEEEcCCccHHHHHHHH-HcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-----cceEEEe
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQ-KHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-----VVDAIFM 130 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-----~~D~v~~ 130 (244)
+...+|||+|||+|.++..+++ ..|..+ ++++|. +.|++.|++. ++++|..+|+.+ ++ ..|+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEE
Confidence 3568999999999999999994 577888 999999 9999999862 689999999988 33 3599999
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh-hccCceecCHHHHHHHHHhC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~t~~e~~~ll~~a 209 (244)
..++|++++.+ .+++++.+.|+|||.+++.+...... ................ +...+. +.++|..++++|
T Consensus 80 ~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 80 NGVLHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDE----LPEQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEA 151 (152)
T ss_dssp ESTGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHH----HHHHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHT
T ss_pred cCchhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHH----HHHHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhc
Confidence 99999999874 88999999999999999998862211 0001111111111100 011112 788999999999
Q ss_pred C
Q 041308 210 G 210 (244)
Q Consensus 210 G 210 (244)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=130.96 Aligned_cols=159 Identities=17% Similarity=0.089 Sum_probs=131.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.+. ++++.+|||||||-|.+++.+++++ +++ ++++++ +++.+.+++. .++++...|+.+..+.
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 455888888 9999999999999999999999998 888 999999 8888888762 5899999988655444
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|-|++.-+++|+..+.-...++++++.|+|||++++.....++.... ....+... . ..++|..++..++.+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----~~~~~i~~--y--iFPgG~lPs~~~i~~ 209 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----RFPDFIDK--Y--IFPGGELPSISEILE 209 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----cchHHHHH--h--CCCCCcCCCHHHHHH
Confidence 799999999999999888999999999999999999998877664221 00111111 1 257899999999999
Q ss_pred HHHhCCCCeEEEEEccce
Q 041308 205 LGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~ 222 (244)
...++||.+..++.+..+
T Consensus 210 ~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 210 LASEAGFVVLDVESLRPH 227 (283)
T ss_pred HHHhcCcEEehHhhhcHH
Confidence 999999999998877654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=124.48 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=105.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D 126 (244)
.+++.++ ..+..+|||+|||+|.++..++++. .+ ++++|. +.+++.+++. -++.+...|+... ++. .|
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~g--~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLAG--YD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4555555 4456899999999999999999863 56 999999 9999877642 2366777777543 333 59
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLG 206 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll 206 (244)
+|++..++|++++++...++++++++|+|||++++.+....+..... .+.....+.+++.+++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYY 159 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHh
Confidence 99999999999988888999999999999999888776433221000 0112346789999999
Q ss_pred HhCCCCeEEEEEc
Q 041308 207 FSTGFPHLRAFIS 219 (244)
Q Consensus 207 ~~aGf~~~~~~~~ 219 (244)
. +|+++.....
T Consensus 160 ~--~~~~~~~~e~ 170 (195)
T TIGR00477 160 A--DWELLKYNEA 170 (195)
T ss_pred C--CCeEEEeecc
Confidence 5 5888887643
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-16 Score=125.43 Aligned_cols=182 Identities=10% Similarity=-0.010 Sum_probs=120.5
Q ss_pred ccccccCchHHHHHHHHHHcccccchHHHhccCCC-CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC
Q 041308 28 YSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDG-FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA 105 (244)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a 105 (244)
|+.+...+.....+...+......+.+.+++.+.. ..+..+|||+|||+|.++..+++.. .+ ++++|+ +.|++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~-v~gvD~s~~~i~~a 93 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG--AI-VKAVDISEQMVQMA 93 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC--CE-EEEEECCHHHHHHH
Confidence 44445444444455554433333444445544431 3456899999999999999998763 46 999999 9999888
Q ss_pred CCC-------CCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhh
Q 041308 106 PSI-------PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA 178 (244)
Q Consensus 106 ~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~ 178 (244)
+++ .++.+..+|+.+.....|+|++..+++|+++++..++++++.+.+++++.+.+... . .....
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~----~---~~~~~- 165 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK----T---AWLAF- 165 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC----c---hHHHH-
Confidence 753 37899999986644346999999999999887788899999999987655554211 1 11100
Q ss_pred hhcccHhhhhh-hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 179 LLEGDIFVMTI-YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 179 ~~~~d~~~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+....... ....-..++.+++.++++++||+++......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 166 LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 01111110000 0112345689999999999999999887654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=125.41 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=113.8
Q ss_pred HHHHHHHHHHcccc------cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-
Q 041308 37 MNGLMRKAMSRVFV------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI- 108 (244)
Q Consensus 37 ~~~~f~~~~~~~~~------~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~- 108 (244)
+.+.|+++...|.. ..++.+++.++ ..+..+|||+|||+|.++..+.+. ..+ ++++|+ +.|++.+++.
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhC
Confidence 34455555444332 33455677766 455689999999999999988764 356 999999 9999988875
Q ss_pred CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh
Q 041308 109 PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF 185 (244)
Q Consensus 109 ~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~ 185 (244)
..+.++.+|+.+. ++. .|+|++..++|+.++. ..+++++.++|+|||.+++........ +.........+
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~-- 157 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVD-- 157 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhc--
Confidence 4567889998663 544 4999999999987765 588999999999999999987643322 11110000000
Q ss_pred hhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 186 VMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 186 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
.. .......+.+++.+++...|+..
T Consensus 158 -~~--~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 158 -ER--PHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred -cC--CccccCCCHHHHHHHHHhCCcee
Confidence 00 12244568899999999988764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=137.97 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=114.6
Q ss_pred cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC--
Q 041308 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-- 121 (244)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-- 121 (244)
.......+++.++ ..+..+|||||||+|.++..+++... + ++++|. +.+++.+++ .+++.++.+|+.+.
T Consensus 22 ~~~~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 22 DKEERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL 97 (475)
T ss_pred CchhhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc
Confidence 3334456777776 55667999999999999999998753 5 999999 999987653 26789999998642
Q ss_pred -CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 122 -IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 122 -~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+|. .|+|++..++||+++++..+++++++++|||||++++.|.......... .. ......++
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~~---------~~~~~~~~ 162 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------RK---------NNPTHYRE 162 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------cc---------CCCCeecC
Confidence 443 4999999999999998888999999999999999999997654431100 00 12234456
Q ss_pred HHHHHHHHHhCCCCeEEE
Q 041308 199 EQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~ 216 (244)
..+|.+++.++||.....
T Consensus 163 ~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 163 PRFYTKVFKECHTRDEDG 180 (475)
T ss_pred hHHHHHHHHHheeccCCC
Confidence 889999999999997754
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=140.10 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=106.1
Q ss_pred CcccccccCchHHHHHHHHHHccccc--chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHH
Q 041308 26 PAYSYYGKKPKMNGLMRKAMSRVFVP--FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVV 102 (244)
Q Consensus 26 ~~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i 102 (244)
.+|+.+...++..+.|...|...... ..+.....++ +.++.+|||+|||+|..+..+++.+|+.+ ++++|+ +.|+
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~ML 455 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENVI 455 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHHH
Confidence 34566666666666666555432211 1222233344 55678999999999999999999999999 999999 8999
Q ss_pred HhCCCC-----CCeeEEeCCCCCC---CCc--ceEEEeccccccC-----------CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 103 AKAPSI-----PEVTHIGGDMFKS---IHV--VDAIFMKWVLTTW-----------TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 103 ~~a~~~-----~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~-----------~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+.++++ .+++++.+|+.+. ++. .|+|+++.++|++ ++++..++|++++++|||||++++
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 888753 4678888998652 333 4999999999976 245678999999999999999999
Q ss_pred ecccCCCC
Q 041308 162 CEPVLPDD 169 (244)
Q Consensus 162 ~d~~~~~~ 169 (244)
.|...++.
T Consensus 536 ~D~v~~E~ 543 (677)
T PRK06922 536 RDGIMTED 543 (677)
T ss_pred EeCccCCc
Confidence 99766544
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=122.82 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=105.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
+..+|||+|||||.++..+++.. +.+ ++++|. ++|++.+++. ..++.+|+.+. ++. .|+|++..++||+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 46899999999999999999886 457 999999 9999999864 34677888653 554 4999999999999876
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc-c--HhhhhhhccC-------------ceecCHHHHHH
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG-D--IFVMTIYRAK-------------GKHKTEQEFKQ 204 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~-d--~~~~~~~~~~-------------~~~~t~~e~~~ 204 (244)
.+++++++|+|||. ++++|...++. ........++ . +.... ...+ ....+.+++.+
T Consensus 127 --~~~l~e~~RvLkp~--~~ile~~~p~~---~~~~~~~~~y~~~~~P~~~-~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 --EKVIAEFTRVSRKQ--VGFIAMGKPDN---VIKRKYLSFYLRYIMPYIA-CLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred --HHHHHHHHHHhcCc--eEEEEeCCCCc---HHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999993 44556544433 1111111111 0 00010 0111 12247889999
Q ss_pred HHHhCCCCeEEEEEccc-eeEEEeecC
Q 041308 205 LGFSTGFPHLRAFISII-FTLFLSSKS 230 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~-~~~~~~~~~ 230 (244)
+++++| ..++.+...+ ...+.+++|
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEee
Confidence 999984 7678877765 445666665
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-15 Score=120.04 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=98.6
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHH----hCCCCCCeeEEeCCCCCC-----CCc-ceE
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVA----KAPSIPEVTHIGGDMFKS-----IHV-VDA 127 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~----~a~~~~~i~~~~gd~~~~-----~p~-~D~ 127 (244)
.++ ++++.+|||+|||+|.++..+++..+..+ ++++|. +.|++ .+++..++.++.+|..++ ++. .|+
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 355 77889999999999999999999887667 999999 87776 444447899999998653 222 488
Q ss_pred EEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEe-cccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 128 IFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 128 v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|++ +.+++ +...++++++++|||||+++|. .+- +-+...+ .. +..++..++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~d~~~~--------------------~~-~~~~~~~~~ 197 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR-SIDVTKD--------------------PK-EIFKEEIRK 197 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecc-cccCcCC--------------------HH-HHHHHHHHH
Confidence 873 33332 3346789999999999999993 321 0000000 00 112344699
Q ss_pred HHhCCCCeEEEEEccc---eeEEEeec
Q 041308 206 GFSTGFPHLRAFISII---FTLFLSSK 229 (244)
Q Consensus 206 l~~aGf~~~~~~~~~~---~~~~~~~~ 229 (244)
++++||+.++..+... ++.+++.+
T Consensus 198 l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 198 LEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999999988743 25555544
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-16 Score=110.49 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=75.1
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHH
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~ 142 (244)
||+|||+|..+..+++. +..+ ++++|. +.+++.+++. .++++..+|+.+. ++. .|+|++..++||+++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--P 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--H
T ss_pred CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--H
Confidence 89999999999999998 7777 999999 9999888863 5677999998775 555 399999999999944 4
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
.++++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 6999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=124.62 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=83.7
Q ss_pred CCcceEEEEcCCccH----HHHHHHHHcC-----CCCeEEEeec-hHHHHhCCCC-------------------------
Q 041308 64 KGVKRLVDVGGSAGD----CLRIILQKHC-----FICEGINFDL-PEVVAKAPSI------------------------- 108 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-~~~i~~a~~~------------------------- 108 (244)
.+..+|+|+|||||. ++..+.+..+ +.+ ++++|+ +.|++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 345799999999997 4556666554 467 999999 9999998863
Q ss_pred --------CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 --------PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 --------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+|+|..+|+.++ .+. .|+|++++++||+++++..+++++++++|+|||++++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 2689999999886 333 4999999999999988888999999999999999999654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=123.36 Aligned_cols=149 Identities=16% Similarity=0.078 Sum_probs=101.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D~v~~~ 131 (244)
.++..+|||+|||+|.++..+++. .|+.+ ++++|+ +.|++.+++. .++++..++.... .+. .|+|+++
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 356689999999999999888764 45668 999999 9999998864 4566665544221 222 4999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh-hh--hccC----ceecCHHHHHH
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM-TI--YRAK----GKHKTEQEFKQ 204 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~-~~--~~~~----~~~~t~~e~~~ 204 (244)
.++||+++++...+|++++++++ |.+++.|...+.. .+. .. ........ .. ...+ ...++.+|+.+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~~~-~~-~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---AYA-LF-WAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---HHH-HH-HHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 99999999887899999999998 6666666644321 110 00 00000000 00 0000 24568999999
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
++++ ||++.....+.
T Consensus 210 ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 210 LAPQ-GWRVERQWPFR 224 (232)
T ss_pred HhhC-CCeEEecccee
Confidence 9999 99977765543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=126.05 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=103.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D~ 127 (244)
++..++ ..+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. -++++...|+.+. ++. .|+
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~ 187 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDF 187 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccE
Confidence 444443 333469999999999999999986 357 999999 8998877643 3678888888654 443 599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|++..++|++++++...+++++.++|+|||+++++.....+....+ .+....++.+|++++++
T Consensus 188 I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~-----------------~p~~~~~~~~el~~~~~ 250 (287)
T PRK12335 188 ILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP-----------------MPFSFTFKEGELKDYYQ 250 (287)
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC-----------------CCCCcccCHHHHHHHhC
Confidence 9999999999988889999999999999999887665432221100 11123467899999995
Q ss_pred hCCCCeEEEE
Q 041308 208 STGFPHLRAF 217 (244)
Q Consensus 208 ~aGf~~~~~~ 217 (244)
+|++++..
T Consensus 251 --~~~i~~~~ 258 (287)
T PRK12335 251 --DWEIVKYN 258 (287)
T ss_pred --CCEEEEEe
Confidence 49998874
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-15 Score=130.35 Aligned_cols=156 Identities=11% Similarity=-0.071 Sum_probs=117.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCCCCcceEEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKSIHVVDAIF 129 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~~p~~D~v~ 129 (244)
+.+++.++ .+++.+|||||||+|.++..+++.. +.+ ++++|+ +.+++.++++ ..+++..+|+.+.-...|+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 34666666 7788999999999999999998765 568 999999 9999988764 357888888754322359999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..+++|+.+.+...+++++.++|||||++++.+...+...... ..+.+. .. .+++...+.+++.+.++ .
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi--fp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI--FPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee--cCCCcCCCHHHHHHHHH-C
Confidence 99999999887778999999999999999999876554331110 011111 11 35677778888888765 6
Q ss_pred CCCeEEEEEccce
Q 041308 210 GFPHLRAFISIIF 222 (244)
Q Consensus 210 Gf~~~~~~~~~~~ 222 (244)
||.+.++..+..+
T Consensus 304 ~~~v~d~~~~~~h 316 (383)
T PRK11705 304 LFVMEDWHNFGAD 316 (383)
T ss_pred CcEEEEEecChhh
Confidence 8999888776544
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-16 Score=113.68 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=60.5
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C---CeeEEeCCCCCCCC--cceEEEeccccccC
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P---EVTHIGGDMFKSIH--VVDAIFMKWVLTTW 137 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~---~i~~~~gd~~~~~p--~~D~v~~~~~lh~~ 137 (244)
||||||+|.++..+++.+|..+ ++++|+ +.|++.++++ . ++++...|..+..+ ..|+|++.+++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999999999999 999999 9999888875 2 34444455444433 35999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCEE
Q 041308 138 TDDECKLIMENYYKALLAGRKL 159 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~l 159 (244)
++ ...+++++++.|+|||+|
T Consensus 80 ~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---HHHHHHHHTTT-TSS-EE
T ss_pred hh--HHHHHHHHHHHcCCCCCC
Confidence 54 458999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=119.24 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=88.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc--ceEEEeccccccCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~ 138 (244)
..+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.|++. +++++..+|+.++++. .|+|++..++||++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCC
Confidence 34567999999999999999998888888 999999 9999999874 7788999999886554 49999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+++..++++++.+++ +++++|.|...+.
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 888889999999987 6788888875443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-15 Score=119.63 Aligned_cols=137 Identities=20% Similarity=0.128 Sum_probs=105.2
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-CCc--ceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~ 139 (244)
..+|||+|||+|.++..+++.+|..+ ++++|. +.+++.+++. +++.++.+|+.+. ++. .|+|++.+++||..+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 47999999999999999999999988 999999 8888777754 5789999998764 343 499999999999876
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
. ..+++++.++|+|||.+++.+...... . . ...... .......+.++|.+++.++ |+...+...
T Consensus 114 ~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---~---~---~~~~~~----~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 114 L--SQALSELARVLKPGGLLAFSTFGPGTL---H---E---LRQSFG----QHGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred H--HHHHHHHHHHcCCCcEEEEEeCCccCH---H---H---HHHHHH----HhccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 5 478999999999999999986533221 0 0 001100 1224456788999999998 987776443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=122.80 Aligned_cols=144 Identities=15% Similarity=0.015 Sum_probs=105.4
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------C----CeeEEeCCCCCCCCcceEEEecc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------P----EVTHIGGDMFKSIHVVDAIFMKW 132 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~----~i~~~~gd~~~~~p~~D~v~~~~ 132 (244)
+.+|||+|||+|.++..|++.. .. ++++|+ +.|++.|++. . ++++.+.|.....+..|+|++.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 3789999999999999999876 44 999999 9999999863 2 46677777655555689999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC----ceecCHHHHHHHHHh
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHKTEQEFKQLGFS 208 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~t~~e~~~ll~~ 208 (244)
+++|+.+++ .+++.+.+.|||||+++|.+....-. .+.. ..+++-..+.....| ....++++...+++.
T Consensus 167 vleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~l---S~~~--~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 167 VLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTIL---SFAG--TIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHH---Hhhc--cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 999998874 89999999999999999987644322 1111 111111111101122 234588999999999
Q ss_pred CCCCeEEEEEc
Q 041308 209 TGFPHLRAFIS 219 (244)
Q Consensus 209 aGf~~~~~~~~ 219 (244)
+|+++..+...
T Consensus 240 ~~~~v~~v~G~ 250 (282)
T KOG1270|consen 240 NGAQVNDVVGE 250 (282)
T ss_pred cCcchhhhhcc
Confidence 99998876543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=114.60 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=98.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~ 127 (244)
++..++ ..+..+|||+|||+|.++..+++++|+.+ ++++|. +.+++.++++ .+++++.+|....++. .|+
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 445555 66778999999999999999999999888 999999 9998888752 5789999988555544 599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|++....+++ ..+++++.+.|+|||++++..... .+.+++.++++
T Consensus 101 v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~ 145 (187)
T PRK08287 101 IFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLE 145 (187)
T ss_pred EEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHH
Confidence 9987665442 367899999999999998854311 11456678899
Q ss_pred hCCCCeEEEEEc
Q 041308 208 STGFPHLRAFIS 219 (244)
Q Consensus 208 ~aGf~~~~~~~~ 219 (244)
++||+.+++...
T Consensus 146 ~~g~~~~~~~~~ 157 (187)
T PRK08287 146 KCGVSELDCVQL 157 (187)
T ss_pred HCCCCcceEEEE
Confidence 999988776444
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=117.57 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=101.1
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCC
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGD 117 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd 117 (244)
.|.+.-...+++ +.+++...+ .....+|.|+|||+|..+..|++++|... ++++|- +.|++.|+.. ++++|..+|
T Consensus 7 ~Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 7 QYLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceeccc
Confidence 444444455555 345777777 88889999999999999999999999999 999999 9999999765 999999999
Q ss_pred CCCCCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 118 MFKSIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 118 ~~~~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+.+-.|+ .|+++.+-+||.++|. .++|.++...|.|||.+.+.=
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEEC
Confidence 9765554 5999999999999887 589999999999999999853
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=114.65 Aligned_cols=177 Identities=14% Similarity=0.087 Sum_probs=124.7
Q ss_pred cccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC----C--CCCe-eEEeCCC
Q 041308 47 RVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP----S--IPEV-THIGGDM 118 (244)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~----~--~~~i-~~~~gd~ 118 (244)
+-..++.+.|.+.++ +...+|||||+|||.-+.++++.+|+++ -.--|. +......+ + .+++ .-+..|.
T Consensus 9 RNk~pIl~vL~~~l~--~~~~~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 9 RNKDPILEVLKQYLP--DSGTRVLEIASGTGQHAVYFAQALPHLT-WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hCHhHHHHHHHHHhC--ccCceEEEEcCCccHHHHHHHHHCCCCE-EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 334455555555544 2223699999999999999999999987 433354 32221111 1 1222 1122344
Q ss_pred CCC---CC--------cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh
Q 041308 119 FKS---IH--------VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM 187 (244)
Q Consensus 119 ~~~---~p--------~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~ 187 (244)
.++ .+ ..|+|++.+++|-.+-+.+..+|+.+.++|+|||.|++.-++..+..-.+. -...+|.+..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr 162 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLR 162 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHh
Confidence 433 22 139999999999999999999999999999999999999888765522111 1245666655
Q ss_pred hhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 188 TIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 188 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
. ..+....|+.+++.++.+++|++..+...++.+..+++.+|
T Consensus 163 ~-rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 163 S-RDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred c-CCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 5 45567888999999999999999999999999888877665
|
The function of this family is unknown. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=116.08 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=102.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCcceEEEecccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
..+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.+++. .++++..+|+.......|+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchh
Confidence 3456899999999999999999865 45 999999 9999888753 37899999942222335999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
||+++++...+++++.+.+++++ ++.... .. +........................+..+|.++++++||++.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~-~i~~~~---~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSL-IFTFAP---YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeE-EEEECC---cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 99998888899999998775444 333221 11 111000000000000000122345678999999999999999
Q ss_pred EEEEccce
Q 041308 215 RAFISIIF 222 (244)
Q Consensus 215 ~~~~~~~~ 222 (244)
+......+
T Consensus 211 ~~~~~~~~ 218 (230)
T PRK07580 211 RTERISSG 218 (230)
T ss_pred eeeeccch
Confidence 98776533
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-15 Score=106.98 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=73.1
Q ss_pred EEEEcCCccHHHHHHHHHc---CCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CC--cceEEEec-cccc
Q 041308 69 LVDVGGSAGDCLRIILQKH---CFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IH--VVDAIFMK-WVLT 135 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p--~~D~v~~~-~~lh 135 (244)
|||+|||+|..+..+.+.+ |..+ ++++|+ +.|++.+++. .+++++++|+.+- .. ..|+|++. .++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999986 4567 999999 9999988863 5889999999663 22 25999995 5599
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 041308 136 TWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG 157 (244)
|+++++..++++++.+.|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999997
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-14 Score=118.61 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=79.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-----C--CeeEEeCCCCCC--CCc-----c-e
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-----P--EVTHIGGDMFKS--IHV-----V-D 126 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-----~--~i~~~~gd~~~~--~p~-----~-D 126 (244)
++..+|||+|||||..++.+++..+ ..+ ++++|+ +.|++.++++ + ++.++.+|+.+. ++. . .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 3457899999999999999999987 577 999999 9998877643 3 466789999764 322 1 3
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++...+++++++++..+|++++++|+|||.+++
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45566889999999999999999999999999987
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=118.19 Aligned_cols=145 Identities=12% Similarity=-0.005 Sum_probs=103.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCC-----eeEEeCCCCCCC---CcceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPE-----VTHIGGDMFKSI---HVVDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~-----i~~~~gd~~~~~---p~~D~v~~~~~lh 135 (244)
...+|||||||.|.++..+++.+ .+ |+++|+ +.+|+.|+.... +++.+....+.. ...|+|++..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 46899999999999999999987 56 999999 999999996522 234443332221 1359999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC-----ceecCHHHHHHHHHhCC
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~t~~e~~~ll~~aG 210 (244)
|+++++ .++++|.+.+||||.+++........ ++.......-.+..+ .+. .+...++|+..++.++|
T Consensus 136 Hv~dp~--~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~~---vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDPE--SFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLRI---VPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCHH--HHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHHh---cCCcchhHHHhcCHHHHHHhcccCC
Confidence 999985 69999999999999999987754332 111110011111112 222 23346889999999999
Q ss_pred CCeEEEEEcc
Q 041308 211 FPHLRAFISI 220 (244)
Q Consensus 211 f~~~~~~~~~ 220 (244)
+++....-+.
T Consensus 208 ~~~~~~~g~~ 217 (243)
T COG2227 208 LKIIDRKGLT 217 (243)
T ss_pred ceEEeecceE
Confidence 9988875543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=114.25 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=108.8
Q ss_pred ceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-C----Ccc--eEEEec
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-I----HVV--DAIFMK 131 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~----p~~--D~v~~~ 131 (244)
.+||+||||.|...-.+++..|+ ++ +.++|- |..++..++. .++..-.-|+..+ + +.+ |.+++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999999999887 88 999999 9998888764 4555555566544 2 223 999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc--eecCHHHHHHHHHhC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG--KHKTEQEFKQLGFST 209 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~t~~e~~~ll~~a 209 (244)
++|-.++++.....+++++++|||||.+++.|....+.... .... .+.++-+... ..+|. -.++.++++++|.+|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql-RF~~-~~~i~~nfYV-RgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL-RFKK-GQCISENFYV-RGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH-hccC-CceeecceEE-ccCCceeeeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999876654210 0000 1112211111 12333 235899999999999
Q ss_pred CCCeEEE
Q 041308 210 GFPHLRA 216 (244)
Q Consensus 210 Gf~~~~~ 216 (244)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9998875
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=114.29 Aligned_cols=137 Identities=17% Similarity=0.193 Sum_probs=100.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CC-eeEEeCCCCCCCCc---ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PE-VTHIGGDMFKSIHV---VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~-i~~~~gd~~~~~p~---~D~v~~~~~l 134 (244)
+..+.||+|+|.|..+..++..+ .+++..+|. +..++.|++. .+ .++.+.-+.+-.|+ .|+|++.|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46899999999999999887544 344888898 9999988842 33 34444434222343 4999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
.|++|++...+|++|.++|+|+|.+++-|.+..... ..+|- ..++..|+.+.++++|++||++++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~------~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE------EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET------TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC------ccCeeecCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999998765431 13332 567888999999999999999999
Q ss_pred EEEE
Q 041308 215 RAFI 218 (244)
Q Consensus 215 ~~~~ 218 (244)
+.+.
T Consensus 198 ~~~~ 201 (218)
T PF05891_consen 198 KEEK 201 (218)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 8654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=108.61 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=99.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCC-cceEEEecccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIH-VVDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p-~~D~v~~~~~lh~ 136 (244)
.+..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ .+++++.+|..+..+ ..|+|+++..+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCC
Confidence 3457899999999999999998876 6 999999 9999888763 457888999877543 3599999988887
Q ss_pred CCHHH-------------------HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceec
Q 041308 137 WTDDE-------------------CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHK 197 (244)
Q Consensus 137 ~~~~~-------------------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 197 (244)
.+++. ...+++++.+.|+|||++++++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------ 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------
Confidence 75421 35689999999999999999764211
Q ss_pred CHHHHHHHHHhCCCCeEEEEEccce
Q 041308 198 TEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 198 t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
...++.++++++||+...+.....+
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecC
Confidence 1456788899999998888765543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=109.14 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=100.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEeCCCCCCC-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIGGDMFKSI- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~gd~~~~~- 122 (244)
..+..+|||+|||.|..+..|+++. .+ ++++|+ +..++.+.+ ..++++..+|+++..
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~G--~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQG--HR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhCC--Ce-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3456799999999999999999864 45 999999 888876411 246899999998753
Q ss_pred ---CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhhccCceecC
Q 041308 123 ---HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 123 ---p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+..|.|+-+.++||++++.....++++.++|||||++++.....++.. ..+ ....+
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gp--------------------p~~~~ 168 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGP--------------------PFSVS 168 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCc--------------------CCCCC
Confidence 224999999999999999999999999999999998777655332211 000 12357
Q ss_pred HHHHHHHHHhCCCCeEEEEEc
Q 041308 199 EQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~ 219 (244)
.++++++|.. +|.+..+...
T Consensus 169 ~~eL~~~f~~-~~~i~~~~~~ 188 (213)
T TIGR03840 169 PAEVEALYGG-HYEIELLESR 188 (213)
T ss_pred HHHHHHHhcC-CceEEEEeec
Confidence 8899999853 5776666543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-13 Score=109.58 Aligned_cols=141 Identities=15% Similarity=0.061 Sum_probs=97.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hH----HHHhCCCCCCeeEEeCCCCCCC------CcceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PE----VVAKAPSIPEVTHIGGDMFKSI------HVVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~----~i~~a~~~~~i~~~~gd~~~~~------p~~D~v~~ 130 (244)
+++..+|||+|||+|.++..+++... .-+ ++++|. +. +++.+++..+|.++.+|+..+. +..|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 67889999999999999999999863 457 999998 64 6677766689999999986541 22499987
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
... ..++...++.++.+.|||||+|+|.-.-..-+...+. ...+ .+|. ++|+++|
T Consensus 209 Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~p-------------------e~~f-~~ev-~~L~~~G 263 (293)
T PTZ00146 209 DVA----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKP-------------------EVVF-ASEV-QKLKKEG 263 (293)
T ss_pred eCC----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCH-------------------HHHH-HHHH-HHHHHcC
Confidence 763 1334556778999999999999993111110100000 0011 2445 8889999
Q ss_pred CCeEEEEEcc---ceeEEEeec
Q 041308 211 FPHLRAFISI---IFTLFLSSK 229 (244)
Q Consensus 211 f~~~~~~~~~---~~~~~~~~~ 229 (244)
|+.++..++. -.+.++++.
T Consensus 264 F~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 264 LKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred CceEEEEecCCccCCcEEEEEE
Confidence 9988887764 244455543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=116.42 Aligned_cols=141 Identities=14% Similarity=0.071 Sum_probs=93.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCCcceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIHVVDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p~~D~v~~~~ 132 (244)
++.+|||+|||+|.++..+++. +.+ ++++|+ +.|++.++++ .+++|..+|+.+.-...|+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3579999999999999999986 356 999999 9999888753 246788888743322359999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc--cCceecCHHHHHHHHHhCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR--AKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~t~~e~~~ll~~aG 210 (244)
++||++++....+++++.+ +.+||.++... +.. ............ ... .. ......+.++++++++++|
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~---p~~---~~~~~l~~~g~~-~~g-~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLIISFA---PKT---LYYDILKRIGEL-FPG-PSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEEEeC---Ccc---hHHHHHHHHHhh-cCC-CCcCceeeeCCHHHHHHHHHHCC
Confidence 9999998877778888875 45555544221 111 111000000000 000 00 0112347999999999999
Q ss_pred CCeEEEE
Q 041308 211 FPHLRAF 217 (244)
Q Consensus 211 f~~~~~~ 217 (244)
|++....
T Consensus 292 f~v~~~~ 298 (315)
T PLN02585 292 WKVARRE 298 (315)
T ss_pred CEEEEEE
Confidence 9987654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=105.66 Aligned_cols=129 Identities=18% Similarity=0.074 Sum_probs=96.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC-cceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH-VVDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p-~~D~v~~~~~l 134 (244)
+++.+|||+|||+|..+..+++..|..+ ++++|. +.+++.++++ ++++++.+|+.+. .. ..|+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 3468999999999999999999889889 999999 9999888753 4699999998664 22 2599998753
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
. ....+++++++.|||||++++.+.. . ...++.++.+..|+.+.
T Consensus 122 ---~--~~~~~l~~~~~~LkpGG~lv~~~~~---~----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---A--SLSDLVELCLPLLKPGGRFLALKGR---D----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ---c--CHHHHHHHHHHhcCCCeEEEEEeCC---C----------------------------hHHHHHHHHHhcCceEe
Confidence 2 2357899999999999999987531 1 13345666777799877
Q ss_pred EEEEc-----cceeEEEeecC
Q 041308 215 RAFIS-----IIFTLFLSSKS 230 (244)
Q Consensus 215 ~~~~~-----~~~~~~~~~~~ 230 (244)
++... .++..+++-+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 166 EVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred eeEEEecCCCCCcEEEEEEec
Confidence 65443 34555555544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=118.95 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=89.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCCCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~~p 123 (244)
+-+++.++ .....+|||+|||+|.++..+++++|..+ ++++|. +.+++.++++ .++++..+|.++.++
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 33666666 34446999999999999999999999999 999999 8999888753 368999999987754
Q ss_pred c--ceEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 124 V--VDAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 124 ~--~D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
. .|+|+++-.+|. ++++...++++++++.|+|||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 599999866654 456667789999999999999999984
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=109.08 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=97.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----CCCeeEEeCCCCCC-CCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----IPEVTHIGGDMFKS-IHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----~~~i~~~~gd~~~~-~p~-~D~ 127 (244)
+++..+ .-++.++||+|||.|..+..|++++ .. |+++|. +..++.+++ .-.|+....|+.+. ++. .|+
T Consensus 22 v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 22 VLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 555555 4456899999999999999999986 45 999999 777766553 23588888998665 554 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|++..++++++.+....+++++.+.++|||++++......++...+ .+..-.+.+.|+++.+
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~-----------------~~~~f~~~~~EL~~~y- 159 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP-----------------SPFPFLLKPGELREYY- 159 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S-----------------S--S--B-TTHHHHHT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC-----------------CCCCcccCHHHHHHHh-
Confidence 9999999999999999999999999999999998655432221100 0112224567899998
Q ss_pred hCCCCeEEEEE
Q 041308 208 STGFPHLRAFI 218 (244)
Q Consensus 208 ~aGf~~~~~~~ 218 (244)
+||++++...
T Consensus 160 -~dW~il~y~E 169 (192)
T PF03848_consen 160 -ADWEILKYNE 169 (192)
T ss_dssp -TTSEEEEEEE
T ss_pred -CCCeEEEEEc
Confidence 5799888644
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=111.15 Aligned_cols=148 Identities=13% Similarity=-0.060 Sum_probs=99.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCC--C-c-ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSI--H-V-VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~--p-~-~D~v~~~~~ 133 (244)
.+..+|||+|||+|.++..+.+.. .+ ++++|. +.+++.++++ .++++...|+.+.. + . .|+|++.++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG--AD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC--Ce-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 456899999999999999888753 56 999999 8888877642 35677777764432 2 2 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh-ccCceecCHHHHHHHHHhCCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY-RAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
++|.++. ..+++++.+.|+|||++++........ ...........-....... .......+.++|.++++++||+
T Consensus 124 l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNLK--SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEecCCChH--HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9998875 478999999999999999876421110 0000000000000000000 0113445889999999999999
Q ss_pred eEEEEE
Q 041308 213 HLRAFI 218 (244)
Q Consensus 213 ~~~~~~ 218 (244)
+++...
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 998754
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=104.11 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=73.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC--cceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH--VVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p--~~D~v~~~~~lh~ 136 (244)
+.+|||+|||+|..+..++...|..+ ++++|. +.+++.++++ ++++++.+|+.+..+ ..|+|++.. +|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 58999999999999999998888888 999999 8888776542 579999999966422 359998876 443
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+ ..+++.+++.|+|||++++..
T Consensus 121 ~-----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred H-----HHHHHHHHHhcCCCCEEEEEc
Confidence 2 357788899999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=113.23 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCcceEEEEcCCccHH-HHHHH-HHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC---cceEEE
Q 041308 64 KGVKRLVDVGGSAGDC-LRIIL-QKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH---VVDAIF 129 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~-~~~l~-~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p---~~D~v~ 129 (244)
.++.+|+|||||.|.+ +.-++ +.+|+.+ ++++|. +.+++.|++. .+++|..+|..+..+ ..|+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 3679999999998754 33333 4578888 999999 9999888752 579999999987532 359999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+. ++|++..++..++++++++.|+|||.+++--
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999976667899999999999999999844
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=109.47 Aligned_cols=147 Identities=14% Similarity=-0.033 Sum_probs=101.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----C-CeeEEeCCCCCCC---Cc-ceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----P-EVTHIGGDMFKSI---HV-VDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~-~i~~~~gd~~~~~---p~-~D~v~~~~~ 133 (244)
...+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ . ++++..+|+.+.. +. .|+|++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 35799999999999999988764 45 899999 8888877652 2 5888888875431 12 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh-hcccHhhh-hhhccCceecCHHHHHHHHHhCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL-LEGDIFVM-TIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~-~~~d~~~~-~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
+||..+.+ .+++++.+.|+|||.+++.....+.. ....... ..+..... ..........+..++.++++++||
T Consensus 122 l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~ 196 (224)
T TIGR01983 122 LEHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGL 196 (224)
T ss_pred HHhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCC
Confidence 99988764 78999999999999999876532211 1110000 00000000 000011234578899999999999
Q ss_pred CeEEEEEc
Q 041308 212 PHLRAFIS 219 (244)
Q Consensus 212 ~~~~~~~~ 219 (244)
+++++...
T Consensus 197 ~i~~~~~~ 204 (224)
T TIGR01983 197 RVKDVKGL 204 (224)
T ss_pred eeeeeeeE
Confidence 99988654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=99.05 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=79.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p-~ 124 (244)
+++.+. ..+..+|||+|||+|.++..++++.|+.+ ++++|. +.+++.++++ .+++++.+|.... .+ .
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 455555 55667999999999999999999998888 999999 8888887642 5789988887642 22 3
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++....++ ..++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 599998765432 348899999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=104.54 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=99.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEeCCCCCCC-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIGGDMFKSI- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~gd~~~~~- 122 (244)
..+..+|||+|||.|..+..|+++. .+ |+++|+ +..++.+.. ..+|++..+|+++..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G--~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG--HE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC--Ce-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 3456799999999999999999864 56 999999 887775421 156899999998763
Q ss_pred ---CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhhccCceecC
Q 041308 123 ---HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 123 ---p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+..|+|+-+.++||++++...+.++++.++|+|||+++++....++.. ..| ....+
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gP--------------------p~~~~ 171 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGP--------------------PFSVS 171 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCC--------------------CCCCC
Confidence 234999999999999999999999999999999997665444333221 111 11357
Q ss_pred HHHHHHHHHhCCCCeEEEEEc
Q 041308 199 EQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~ 219 (244)
.+++++++.+ +|.+..+...
T Consensus 172 ~~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 172 DEEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred HHHHHHHhcC-CceEEEeeec
Confidence 8999999853 3777666543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-13 Score=114.25 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=87.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc-ceE
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV-VDA 127 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~-~D~ 127 (244)
.+++.++ .....+|||+|||+|.++..+++++|..+ ++++|+ +.+++.++++ -..+++.+|.++..+. .|+
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3555555 33346899999999999999999999999 999999 8999988753 2456788888776544 599
Q ss_pred EEeccccccC---CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTW---TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~---~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+++..+|.. ..+....+++++.+.|||||.++|+-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 9999988863 344567899999999999999998754
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=104.58 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=96.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---CCc--ceEEEeccccccC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---IHV--VDAIFMKWVLTTW 137 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~ 137 (244)
++..+|||+|||+|.++..+++. ...+ ++++|+ +.+++.+++ .+++++.+|+.+. ++. .|+|++.+++||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 35579999999999999988765 3567 899999 889888765 4678888888653 333 4999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhc----cc------HhhhhhhccCceecCHHHHHHHHH
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLE----GD------IFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
++. ..+++++.+++++ +++.-+ .. ..+....... +. ..... .+.....+.+++.++++
T Consensus 89 ~d~--~~~l~e~~r~~~~---~ii~~p---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 89 RNP--EEILDEMLRVGRH---AIVSFP---NF--GYWRVRWSILTKGRMPVTGELPYDWYN--TPNIHFCTIADFEDLCG 156 (194)
T ss_pred cCH--HHHHHHHHHhCCe---EEEEcC---Ch--hHHHHHHHHHhCCccccCCCCCccccC--CCCcccCcHHHHHHHHH
Confidence 875 4788988877654 333211 11 0010000000 00 00000 12234678999999999
Q ss_pred hCCCCeEEEEEccc
Q 041308 208 STGFPHLRAFISII 221 (244)
Q Consensus 208 ~aGf~~~~~~~~~~ 221 (244)
++||++++.....+
T Consensus 157 ~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 157 ELNLRILDRAAFDV 170 (194)
T ss_pred HCCCEEEEEEEecc
Confidence 99999999877643
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=106.45 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=94.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
...+|||+|||+|.++..+++..|+.+ ++++|. +.+++.++++ ++++++.+|+++.++. .|+|+++...+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence 346999999999999999999999888 999999 9999888753 4699999999887644 49999854332
Q ss_pred ------cCCHHH------------------HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 136 ------TWTDDE------------------CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 136 ------~~~~~~------------------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
.+..+. ...+++++.+.|+|||++++... .
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----~---------------------- 219 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----Y---------------------- 219 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----c----------------------
Confidence 222211 23689999999999999987321 0
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
...+++.++++++||+.+++..-
T Consensus 220 -----~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 -----DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred -----cHHHHHHHHHHhCCCCceEEEeC
Confidence 11467889999999998776543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=107.53 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=101.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------C-CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------I-PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~-~~i~~~~gd~~~~~p~- 124 (244)
+.+...++.++ +.+|||||||.|.++-.++.+.+. . ++++|. +...-..+. . .++.+.. ...+.+|.
T Consensus 105 ~rl~p~l~~L~-gk~VLDIGC~nGY~~frM~~~GA~-~-ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~ 180 (315)
T PF08003_consen 105 DRLLPHLPDLK-GKRVLDIGCNNGYYSFRMLGRGAK-S-VIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNL 180 (315)
T ss_pred HHHHhhhCCcC-CCEEEEecCCCcHHHHHHhhcCCC-E-EEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhcccc
Confidence 34555553244 489999999999999999998764 4 899996 433222211 1 2333332 23344443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchH--HhhhhhcccHhhhhhhccC-ceecCH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQ--RTRALLEGDIFVMTIYRAK-GKHKTE 199 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~-~~~~t~ 199 (244)
.|+|++--||+|..++ ...|+++++.|+|||.+++=..+++.+..... ..+++. +.+ --..|.
T Consensus 181 ~~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~----------m~nv~FiPs~ 248 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAK----------MRNVWFIPSV 248 (315)
T ss_pred CCcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccC----------CCceEEeCCH
Confidence 4999999999998887 58899999999999999986666655432110 011100 111 123489
Q ss_pred HHHHHHHHhCCCCeEEEEEcc
Q 041308 200 QEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+..|++++||+.+++.+..
T Consensus 249 ~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 249 AALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHHHHHcCCceEEEecCc
Confidence 999999999999999987764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=106.95 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=99.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~ 133 (244)
..+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.++++ .+++++.+|++++++. .|+|+++.-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC
Confidence 34567999999999999999999999888 999999 8888887753 5799999999887552 599988532
Q ss_pred c------ccCCH------------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh
Q 041308 134 L------TTWTD------------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 189 (244)
Q Consensus 134 l------h~~~~------------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 189 (244)
. +.+.+ +...++++++.+.|+|||++++. . . .
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~----g---~---------------- 240 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I----G---Y---------------- 240 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E----C---c----------------
Confidence 2 11111 12357889999999999999972 1 0 0
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEE-EEccceeEEEeec
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRA-FISIIFTLFLSSK 229 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~~~~~~ 229 (244)
...+++.+++++.||..+++ .+..+...++.++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01456888999999986665 4455555666553
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-13 Score=105.40 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=98.0
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCCCCc--ceEEEec
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKSIHV--VDAIFMK 131 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~~p~--~D~v~~~ 131 (244)
.++ -....++||+|||.|.++..|+.+.- + ++++|. +..++.|+++ ++|++..+|+-+..|. +|+|+++
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 344 45668999999999999999997763 4 899999 9999988753 8899999999777666 4999999
Q ss_pred cccccCCH-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 132 WVLTTWTD-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 132 ~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
-++|++++ ++...+++++.+.|+|||.+++.+... ... ..-|.....+.+.++|++.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-----------------~~c----~~wgh~~ga~tv~~~~~~~- 171 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-----------------ANC----RRWGHAAGAETVLEMLQEH- 171 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-----------------HHH----HHTT-S--HHHHHHHHHHH-
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-----------------Ccc----cccCcccchHHHHHHHHHH-
Confidence 99999986 677889999999999999999977521 011 1124445678888998876
Q ss_pred CCeEEEEEc
Q 041308 211 FPHLRAFIS 219 (244)
Q Consensus 211 f~~~~~~~~ 219 (244)
|..++...+
T Consensus 172 ~~~~~~~~~ 180 (201)
T PF05401_consen 172 LTEVERVEC 180 (201)
T ss_dssp SEEEEEEEE
T ss_pred hhheeEEEE
Confidence 666665444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=102.58 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=81.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
...++||+|||+|.++..+++..|+.+ ++++|+ +.+++.++++ ++++++..|.++.++. .|+|+++--+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 468999999999999999999999989 999999 9999888763 3489999999998663 59999998877
Q ss_pred cCCH---HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTD---DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~---~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.-.+ +-..++++++.+.|+|||+++++-.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 6554 3457899999999999999977543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=101.77 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=78.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC---------CCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS---------IHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~---------~p~ 124 (244)
++.+.+..+++..+|||+|||||.++..+++..+ ..+ ++++|+..| ...++++++.+|+.+. ++.
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3445555356778999999999999999999864 567 999999443 2336799999999873 223
Q ss_pred --ceEEEeccccccCCHHH---------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDE---------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~---------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++....+....+. ...+|++++++|+|||.+++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 49999876655443211 24689999999999999999754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-12 Score=99.99 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=85.6
Q ss_pred EEeec-hHHHHhCCCC---------CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 94 INFDL-PEVVAKAPSI---------PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 94 ~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
+++|. ++|++.|+++ .+++++.+|+.+. ++. .|+|++..++|++++. .++|++++|+|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence 47899 9999988532 3689999999663 444 4999999999999865 588999999999999999
Q ss_pred EecccCCCCCCchHHhhhhhcccHh----hhh------hhc--cCceecCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 161 ACEPVLPDDSNESQRTRALLEGDIF----VMT------IYR--AKGKHKTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 161 i~d~~~~~~~~~~~~~~~~~~~d~~----~~~------~~~--~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
+.|...++..-......+ ...... ... .+. .-....+.+++.++++++||+.++......+
T Consensus 79 i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGW-MIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEECCCCChHHHHHHHHH-HccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 999875543111000000 000000 000 000 0023358899999999999999988776554
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=104.58 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=76.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~--~D~v~~~ 131 (244)
+..+|||+|||+|..+..+++..|+.+ ++++|. +.+++.++++ ++++++.+|+.+. ++. .|+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 468999999999999999999999888 999999 9999888742 6799999998322 333 4999876
Q ss_pred cccccC------CHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTW------TDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~------~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+..... .......++++++++|||||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543211 11113578999999999999999864
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=102.23 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=87.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCcceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~lh 135 (244)
.+..+|||+|||+|.++..+.+..+ .+ ++++|+ +.+++.++++ .++.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH-
Confidence 4568999999999999998776654 36 999999 9999988764 2333333322 35999875432
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+....+++++.++|||||++++...... ..+++.+.+++.||++.+
T Consensus 190 ----~~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ----NPLLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ----HHHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEE
Confidence 3345789999999999999998654210 145678889999999998
Q ss_pred EEEccceeEEEe
Q 041308 216 AFISIIFTLFLS 227 (244)
Q Consensus 216 ~~~~~~~~~~~~ 227 (244)
......-..++.
T Consensus 236 ~~~~~~W~~~~~ 247 (250)
T PRK00517 236 VLERGEWVALVG 247 (250)
T ss_pred EEEeCCEEEEEE
Confidence 876554444433
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=102.53 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
..+++.++ .++..+|||+|||+|..+..+++..+ ..+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 34556665 66778999999999999999998764 456 999999 9998877753 3589999999876443
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...+++++ +++.+.|+|||++++.-
T Consensus 140 ~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 49999998887655 35678899999998843
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=102.21 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=76.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~--~D~v~~~ 131 (244)
...++||||||+|.++..+++++|+.+ ++++|. +.+++.++++ .+++++.+|+.+. ++. .|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 347999999999999999999999999 999999 8898887642 5899999998642 343 3877766
Q ss_pred cccccCCHH------HHHHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTWTDD------ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+..++.... ....++++++++|||||.|++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 543321110 01368999999999999999865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-12 Score=105.87 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=72.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCC---CeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEEecccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFI---CEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~ 136 (244)
...+|||+|||+|.++..+++..+.. + ++++|+ +.+++.|++. +++.+..+|..+. ++. .|+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 45789999999999999999887743 5 899999 9999988764 7899999998763 544 499986543
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..+++++|+|||||+++++..
T Consensus 161 --~----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 --P----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred --C----CCHHHHHhhccCCCEEEEEeC
Confidence 1 236889999999999999764
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-11 Score=93.97 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=91.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CC-eeEEeCCCCCCCCc--ceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PE-VTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~-i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ .+ +.++.+|+.+.++. .|+|++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 45679999999999999999987 467 999999 8998888542 12 88899999887554 49999875
Q ss_pred ccccCC-------------------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC
Q 041308 133 VLTTWT-------------------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 193 (244)
Q Consensus 133 ~lh~~~-------------------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 193 (244)
.+.... ......+++++.++|+|||.+++.....
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------------------- 151 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------------------- 151 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------------------
Confidence 543211 2224568999999999999998754210
Q ss_pred ceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 194 GKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 194 ~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
...+++.+++.++||++..+..
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeee
Confidence 1135678899999999877644
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-12 Score=100.86 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=80.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~ 124 (244)
...+++.++ .++..+|||||||+|..+..+++... +.+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 445667776 77889999999999999998888753 467 999999 9999888763 5799999999776432
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++....++++ +.+.+.|||||++++..
T Consensus 143 ~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 49999887765543 35667899999999853
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-11 Score=101.29 Aligned_cols=96 Identities=21% Similarity=0.145 Sum_probs=76.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEeccc-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWV- 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~- 133 (244)
+..+|||+|||+|.++..+++..|+.+ ++++|+ +.+++.|+++ .+++++.+|+++.++. .|+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 457999999999999999999999889 999999 9999988863 4799999999887654 499998511
Q ss_pred ------------cccCCH----------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 ------------LTTWTD----------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 ------------lh~~~~----------~~~~~~l~~~~~~L~pgG~lii 161 (244)
++|-+. +....+++++.+.|+|||++++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111110 1235789999999999999885
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=95.57 Aligned_cols=141 Identities=19% Similarity=0.215 Sum_probs=101.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---CCc--ceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~ 136 (244)
.+++.+|||+|||.|.+...|.+. .+++ +.++++ +..+..+.+ ..++++++|+.+. +|. .|.|+++.+|.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 467799999999999999888875 5788 999999 776666654 5788999999776 454 399999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh---------------hcccHhhhhhhccCceecCHHH
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL---------------LEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~---------------~~~d~~~~~~~~~~~~~~t~~e 201 (244)
+..++ ++|+++.|+ |.+.++.=+-. .-|..+.. .|++ +++=+..|..+
T Consensus 88 ~~~P~--~vL~EmlRV---gr~~IVsFPNF-----g~W~~R~~l~~~GrmPvt~~lPy~WYd-------TPNih~~Ti~D 150 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRV---GRRAIVSFPNF-----GHWRNRLQLLLRGRMPVTKALPYEWYD-------TPNIHLCTIKD 150 (193)
T ss_pred HhHHH--HHHHHHHHh---cCeEEEEecCh-----HHHHHHHHHHhcCCCCCCCCCCCcccC-------CCCcccccHHH
Confidence 88764 778888665 55555432100 01111111 1111 45556679999
Q ss_pred HHHHHHhCCCCeEEEEEcccee
Q 041308 202 FKQLGFSTGFPHLRAFISIIFT 223 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~~ 223 (244)
++++.++.|+++.+...+....
T Consensus 151 Fe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 151 FEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHHCCCEEEEEEEEcCCC
Confidence 9999999999999987776543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-11 Score=104.12 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=99.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc---ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV---VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~---~D~v~~~~~ 133 (244)
++..+|||+|||+|.++..+++..|..+ ++++|. +.+++.++++ .+++++.+|+++. .+. .|+|+++--
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 3456999999999999999999999989 999999 9999988864 4799999999875 432 499998643
Q ss_pred cccCCH-----------------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh
Q 041308 134 LTTWTD-----------------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY 190 (244)
Q Consensus 134 lh~~~~-----------------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~ 190 (244)
...-.+ +-..++++++.+.|+|||.+++ |... .
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~--~--------------------- 384 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF--D--------------------- 384 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--c---------------------
Confidence 211000 1123677788889999998775 3211 0
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEE-EEccceeEEEeecCch
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRA-FISIIFTLFLSSKSNF 232 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~~~~~~~~~ 232 (244)
..+.+.+++++.||+.+++ .+..+..+++++++..
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 1456788999999987665 5566667777776543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=98.50 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=76.3
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC----C
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI----H 123 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~----p 123 (244)
+..++ ..+..+|||+|||+|.++..+++.. +..+ ++++|. +.+++.++++ +++.++.+|+.+.+ +
T Consensus 33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34455 6777899999999999999998764 5567 999999 9999877642 57889999986532 2
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..|+|++... ..+...+++++.+.|||||++++
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 3599987532 22345789999999999999986
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=99.62 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=79.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH- 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p- 123 (244)
...+++.++ .++..+|||+|||+|.++..+++..+ +.+ ++++|. +.+++.++++ .+++++.+|..+..+
T Consensus 66 ~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 66 VAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 345666666 77889999999999999999998864 467 999999 9999888753 579999999977543
Q ss_pred --cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 124 --VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
..|+|++.....+++ +.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 259999887655443 4567889999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=97.31 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=76.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEecccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVL 134 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~l 134 (244)
.++..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ .++.++.+|+.+.++. .|+|++.--.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCC
Confidence 5566899999999999999988763 346 999999 8899877653 3578889998776543 4999987433
Q ss_pred ccCCH-------------------HHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 135 TTWTD-------------------DECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 135 h~~~~-------------------~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+.-+. .....+++++.+.|||||+++++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 22111 113568899999999999999875543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=99.99 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=93.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCC-c-ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIH-V-VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p-~-~D~v~~~~~lh~~~~~ 140 (244)
...+|||+|||+|.++..++++.+..+ ++++|+ +.+++.++++ ++++++.+|+++... . .|+|+++..+++.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCch
Confidence 347999999999999999988877778 999999 9999988865 689999999987632 2 5999999888886644
Q ss_pred HH------------------HHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 141 EC------------------KLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 141 ~~------------------~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
+. ..+++.....|+|+|.++++- ... +. + +...+.+++
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y---ss~---~~-------y-----------~~sl~~~~y 198 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY---SGR---PY-------Y-----------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE---ecc---cc-------c-----------cccCCHHHH
Confidence 22 245666778888888777651 111 10 0 223458899
Q ss_pred HHHHHhCCCCe
Q 041308 203 KQLGFSTGFPH 213 (244)
Q Consensus 203 ~~ll~~aGf~~ 213 (244)
+.+++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999974
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-11 Score=99.83 Aligned_cols=131 Identities=16% Similarity=0.057 Sum_probs=95.7
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEec-----
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMK----- 131 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~----- 131 (244)
.+|||+|||+|.++..+++..|+.+ ++++|+ +.+++.++++ .+++++.+|++++++. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 6899999999999999999999888 999999 9999888863 3599999999887654 5999885
Q ss_pred --------cccccCCH----------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC
Q 041308 132 --------WVLTTWTD----------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 193 (244)
Q Consensus 132 --------~~lh~~~~----------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 193 (244)
.+.+|-+. +....+++++.+.|+|||.+++ |... .
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~--~------------------------ 247 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN--W------------------------ 247 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc--c------------------------
Confidence 22332221 1356789999999999999876 2210 0
Q ss_pred ceecCHHHHHHHHH-hCCCCeEEE-EEccceeEEEeec
Q 041308 194 GKHKTEQEFKQLGF-STGFPHLRA-FISIIFTLFLSSK 229 (244)
Q Consensus 194 ~~~~t~~e~~~ll~-~aGf~~~~~-~~~~~~~~~~~~~ 229 (244)
..+.+.+++. +.||..+++ .+..+..+++.++
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 0335566777 478876554 4455555666554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=100.36 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~ 125 (244)
+-+++.++ .....+|||+|||.|.++..+++..|..+ ++.+|. ...++.++++ ++..+...|.+++... .
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 44888887 55555999999999999999999999989 999999 8899999875 3335777888888554 6
Q ss_pred eEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|+++--+|. ....-..++++++.+.|++||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99999999985 2233445899999999999999999765
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-11 Score=96.53 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=105.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC------CCe-eEEeCCCCCC--C----CcceEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI------PEV-THIGGDMFKS--I----HVVDAI 128 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~------~~i-~~~~gd~~~~--~----p~~D~v 128 (244)
..-+||||.||+|.+....+..+|. .+ +...|. +..++..++. ..+ +|..+|+|+. + |..+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4579999999999999999999997 56 888898 8777777652 444 9999999975 3 335999
Q ss_pred EeccccccCCHHH-HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC----ceecCHHHHH
Q 041308 129 FMKWVLTTWTDDE-CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHKTEQEFK 203 (244)
Q Consensus 129 ~~~~~lh~~~~~~-~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~t~~e~~ 203 (244)
+.+-++.-|+|.+ +...++.+.+++.|||+++..-.-+.+. .+..+..+. . +..+ -+.||.+|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----le~IAr~Lt---s--Hr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----LEMIARVLT---S--HRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----hHHHHHHHh---c--ccCCCceEEEecCHHHHH
Confidence 9999999999976 4447999999999999999865322221 111111111 0 0111 3568999999
Q ss_pred HHHHhCCCCeEEEE
Q 041308 204 QLGFSTGFPHLRAF 217 (244)
Q Consensus 204 ~ll~~aGf~~~~~~ 217 (244)
+|+++|||+..+..
T Consensus 284 ~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 284 QLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHcCCchhhhe
Confidence 99999999966643
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=97.31 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=78.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p-~ 124 (244)
+++.++ ..+..+|||+|||+|.++..+++..|+.+ ++++|. +.+++.++++ .+++++.+|..+. +. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455555 66778999999999999999998888888 999999 9999888753 5789999998652 22 2
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|.+++.. . .....+++++.+.|+|||++++...
T Consensus 110 ~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 46655421 1 2235789999999999999998754
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-11 Score=104.10 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=79.1
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCC---CCCcc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFK---SIHVV 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~---~~p~~ 125 (244)
+++.+. -.....+||||||+|.++..+++++|+.. ++++|+ +.+++.+.+. .++.++.+|+.. .++.+
T Consensus 114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 33456999999999999999999999999 999999 8887777542 689999999843 35553
Q ss_pred --eEEEeccccccCCHH-----HHHHHHHHHHHHcCCCCEEEEec
Q 041308 126 --DAIFMKWVLTTWTDD-----ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 126 --D~v~~~~~lh~~~~~-----~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|.|++.+... |+.. ....++++++|+|+|||.+.+..
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 8888654332 1111 11478999999999999999964
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=92.11 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=81.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCcc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHVV 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~~ 125 (244)
.+..+. ..++++++|||||||..+++.+..+|..+ ++++|. +++++..+++ +++.++.||.-+. +|..
T Consensus 26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 344555 78889999999999999999998899999 999998 8888777654 8999999998665 4446
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
|+|++.-.- . ...+|+.+...|||||++++
T Consensus 104 daiFIGGg~-~-----i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 104 DAIFIGGGG-N-----IEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred CEEEECCCC-C-----HHHHHHHHHHHcCcCCeEEE
Confidence 999988762 2 24789999999999999997
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-11 Score=96.56 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=101.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeE-EeC---CCCCC-CCc-c
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTH-IGG---DMFKS-IHV-V 125 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~-~~g---d~~~~-~p~-~ 125 (244)
..+++...+ ..+..++||+|||||.....+-..... .+++|+ .+|+++|.++.-... .++ +|.+. .+. .
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 444555555 455899999999999999988876544 678899 999999987522111 111 13332 222 5
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|+...|+-.+-+- ..++.-+...|+|||.|.+.-...++... + ........ -.+...++++
T Consensus 190 DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f----~l~ps~Ry--------AH~~~YVr~~ 252 (287)
T COG4976 190 DLIVAADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVETLPDDGG---F----VLGPSQRY--------AHSESYVRAL 252 (287)
T ss_pred cchhhhhHHHhhcch--hhHHHHHHHhcCCCceEEEEecccCCCCC---e----ecchhhhh--------ccchHHHHHH
Confidence 999999999877764 47889999999999999997555444321 0 00111111 1246678999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
++..||+++.+++..
T Consensus 253 l~~~Gl~~i~~~~tt 267 (287)
T COG4976 253 LAASGLEVIAIEDTT 267 (287)
T ss_pred HHhcCceEEEeeccc
Confidence 999999999997753
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.8e-11 Score=98.91 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~l 134 (244)
.+..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ .++.+..+|.....+. .|+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH
Confidence 345899999999999998888653 346 999999 9999888763 3566666664332332 5999986543
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ....+++++.+.|||||++++...
T Consensus 236 ~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 E-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred H-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2 345789999999999999998654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.7e-11 Score=95.58 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=107.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~ 124 (244)
|+..+...+...+|||+|||+|..+..++++.++++ ++++++ +.+.+.|+++ +||+++.+|+.+. .+.
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 334443244578999999999999999999988899 999999 9999988864 8999999998654 222
Q ss_pred --ceEEEeccccccCCHH----------------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhh
Q 041308 125 --VDAIFMKWVLTTWTDD----------------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFV 186 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~----------------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~ 186 (244)
.|+|+++--.+..... .-..+++.+.+.|||||++.++.. ..
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---~e----------------- 173 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---PE----------------- 173 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---HH-----------------
Confidence 4999988665433222 234688999999999999999764 11
Q ss_pred hhhhccCceecCHHHHHHHHHhCCCCeEEEEEccc------eeEEEeecCch
Q 041308 187 MTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII------FTLFLSSKSNF 232 (244)
Q Consensus 187 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~~~~~~~~~ 232 (244)
...|+.+++.+.+|...++..+.. ...++-+.|..
T Consensus 174 -----------rl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 174 -----------RLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred -----------HHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 145778889999999988876532 34455555543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-11 Score=100.99 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=76.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEeccc---
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWV--- 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~--- 133 (244)
.+|||+|||+|.++..+++.+|+.+ ++++|+ +.+++.|+++ .+++++.+|+++.++. .|+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 6899999999999999999999999 999999 9999988764 4699999999877654 599998621
Q ss_pred ----------cccCCH----------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 ----------LTTWTD----------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 ----------lh~~~~----------~~~~~~l~~~~~~L~pgG~lii 161 (244)
++|-+. +-...+++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 121111 2235789999999999999986
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=92.30 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=73.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---------CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---------IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---------~p~ 124 (244)
+.+.+...+++.+|||+|||+|.++..++++. +..+ ++++|+ +.+ ..++++++.+|+.+. ++.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 44445446778999999999999999999886 4567 999999 543 236788888998653 233
Q ss_pred --ceEEEecccc--------ccCC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 --VDAIFMKWVL--------TTWT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 --~D~v~~~~~l--------h~~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++.... +|.. .+...+++++++++|+|||++++.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 4999975332 1111 122357899999999999999985
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=103.06 Aligned_cols=129 Identities=17% Similarity=0.082 Sum_probs=94.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecccc-
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWVL- 134 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~l- 134 (244)
..+|||+|||+|.++..+++..|+.+ ++++|+ +.+++.|+++ ++++++.+|+++.++. .|+|+++--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 46899999999999999999999999 999999 9999988863 4789999999877654 5999984311
Q ss_pred -------------ccCC----------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 135 -------------TTWT----------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 135 -------------h~~~----------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
.+-+ -+-...+++++.+.|+|||.+++ |.. ..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig--~~---------------------- 272 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIG--FK---------------------- 272 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EEC--Cc----------------------
Confidence 1100 01234578889999999999876 321 00
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEE-EEccceeEEE
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRA-FISIIFTLFL 226 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~~~ 226 (244)
..+.+.+++.+.||..+++ .+..+...++
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v 302 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVI 302 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 1456788889999987765 3455544333
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=99.17 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=78.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~ 124 (244)
+..++.... ++++.+|||+|||||.++..++.. ..+ ++++|+ +.|++.++.+ +++.+..+|+.+. ++.
T Consensus 171 a~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 171 ARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 334444444 677889999999999999887654 456 999999 9999877753 4578899999764 433
Q ss_pred --ceEEEeccccc-------cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 --VDAIFMKWVLT-------TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 --~D~v~~~~~lh-------~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++..-.. +...+-...+++++.+.|+|||++++.-
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 49999863321 1122334689999999999999999864
|
This family is found exclusively in the Archaea. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-11 Score=99.84 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=77.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc-ceEEEec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV-VDAIFMK 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~-~D~v~~~ 131 (244)
+++.+|||||||+|.++..+++..|+.+ ++++|+ |.+++.+++. ++++++.+|..+. .+. .|+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3467999999999999999999999999 999999 9999988752 6899999998653 333 4999875
Q ss_pred ccccc--CCHH-HHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLTT--WTDD-ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh~--~~~~-~~~~~l~~~~~~L~pgG~lii~ 162 (244)
. ++. .+.. ....+++++.+.|+|||.+++.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3 222 1111 1258999999999999999984
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=92.87 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=90.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCCCC-----cceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKSIH-----VVDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~~p-----~~D~v~~~~~lh 135 (244)
+..++||+|||+|.++..+++..|..+ ++++|. +.+++.++++ .+++++.+|+++.++ ..|+|+++--..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 345899999999999999999988888 999999 9999988864 346889999877543 249999774321
Q ss_pred ------cCCHH------------------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 136 ------TWTDD------------------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 136 ------~~~~~------------------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
..+++ -...+++.+.+.|+|||++++.-. ..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~---~~---------------------- 219 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS---ER---------------------- 219 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---cc----------------------
Confidence 11111 124788888899999999997421 01
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..+++.+++++.||+..-..+-
T Consensus 220 ------~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 ------QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred ------hHHHHHHHHHHCCCCceeeEcc
Confidence 0345677888899886655443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=79.65 Aligned_cols=92 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC------CCCCeeEEeCCCCCCC--C--cceEEEecccccc
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP------SIPEVTHIGGDMFKSI--H--VVDAIFMKWVLTT 136 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~------~~~~i~~~~gd~~~~~--p--~~D~v~~~~~lh~ 136 (244)
+++|+|||+|.++..+++ .+..+ ++++|. +..++.++ ...++++..+|+.+.. + ..|+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 589999999999999998 55667 999999 77776665 1267899999998763 2 2499999999987
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ .+....+++++.+.|+|||.+++.
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5 445678999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=92.65 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=76.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc---
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--- 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--- 124 (244)
.+++.++ ..+..+|||+|||+|.++..+++... + ++++|. +.+++.++++ .++++..+|..+.++.
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 4555565 67789999999999999987777653 6 999999 9998888753 4699999998776443
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...++++ .+++.+.|+|||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 5999998776554 345678999999999854
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-11 Score=96.29 Aligned_cols=141 Identities=19% Similarity=0.286 Sum_probs=86.7
Q ss_pred CcceEEEEcCC---ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CC--eeEEeCCCCCC---CC--c--c--
Q 041308 65 GVKRLVDVGGS---AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PE--VTHIGGDMFKS---IH--V--V-- 125 (244)
Q Consensus 65 ~~~~vLDvG~G---~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~--i~~~~gd~~~~---~p--~--~-- 125 (244)
+...+|||||| .|+.-.-..+..|+.+ ++.+|. |-++.+++.. ++ ..++.+|+.++ +. . .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 68999999999 3444443444579999 999999 9999998852 45 89999999886 33 2 1
Q ss_pred e-----EEEeccccccCCH-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 126 D-----AIFMKWVLTTWTD-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 126 D-----~v~~~~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
| .+++..+|||++| ++...+++.++++|.||++|+|.+.+.+.. +... .......... ......||.
T Consensus 147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~---p~~~--~~~~~~~~~~--~~~~~~Rs~ 219 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA---PERA--EALEAVYAQA--GSPGRPRSR 219 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS---HHHH--HHHHHHHHHC--CS----B-H
T ss_pred CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC---HHHH--HHHHHHHHcC--CCCceecCH
Confidence 4 6889999999987 678899999999999999999998876433 2111 1122222222 334678899
Q ss_pred HHHHHHHHhCCCCeEE
Q 041308 200 QEFKQLGFSTGFPHLR 215 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~ 215 (244)
+|+.++| .||+.++
T Consensus 220 ~ei~~~f--~g~elve 233 (267)
T PF04672_consen 220 EEIAAFF--DGLELVE 233 (267)
T ss_dssp HHHHHCC--TTSEE-T
T ss_pred HHHHHHc--CCCccCC
Confidence 9999999 5888765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-10 Score=95.22 Aligned_cols=140 Identities=13% Similarity=0.010 Sum_probs=95.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-------------CCCeeEEeCCCCCCCC---c-c
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-------------IPEVTHIGGDMFKSIH---V-V 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-------------~~~i~~~~gd~~~~~p---~-~ 125 (244)
.++.+||++|||+|..++.+++..+..+ ++.+|+ +.|++.|++ .+|++++.+|..+.++ . .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4568999999999999999997544456 999999 999999884 2799999999876432 2 4
Q ss_pred eEEEecccc---ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 126 DAIFMKWVL---TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 126 D~v~~~~~l---h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
|+|++...- +....--...+++.+++.|+|||.+++... . +.. ..+. ...+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~----s---p~~-----~~~~--------------~~~i 281 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN----S---PAD-----APLV--------------YWSI 281 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC----C---hhh-----hHHH--------------HHHH
Confidence 999977421 111112235789999999999999988532 1 110 0000 1225
Q ss_pred HHHHHhCCCCeEEEEEc----cceeEEEeecC
Q 041308 203 KQLGFSTGFPHLRAFIS----IIFTLFLSSKS 230 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~----~~~~~~~~~~~ 230 (244)
...++++||.+...... ++..++.++.+
T Consensus 282 ~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 282 GNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred HHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 68889999988876553 22355666643
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-11 Score=87.09 Aligned_cols=95 Identities=23% Similarity=0.211 Sum_probs=75.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc--ceEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV--VDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~--~D~v~~~~~ 133 (244)
.+|||+|||+|.++..+++.. ..+ ++++|+ |..++.++.+ ++++++.+|+++. ++. .|+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 689999999999999999998 667 999999 9888888752 6899999998663 333 499999877
Q ss_pred cccCC-H-----HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 LTTWT-D-----DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 lh~~~-~-----~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+... . +....+++++.+.|||||.++++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 65432 1 123578999999999999998863
|
... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.6e-10 Score=89.55 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=84.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEeCCCCCCCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIGGDMFKSIH 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~gd~~~~~p 123 (244)
..+..+||+.|||.|.-+..|++++ .+ ++++|+ +..++.+.+ ..++++.++|+|+.-+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G--~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKG--VK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCC--Cc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 3455899999999999999999875 45 999999 877777422 1579999999998622
Q ss_pred ------cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 124 ------VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 124 ------~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..|+|+=+.++++++++.+.+-.+.+.++|+|||.++++...
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 249999999999999999999999999999999999987653
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=91.33 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCee----EEeCCCCCCCC--cceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVT----HIGGDMFKSIH--VVDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~----~~~gd~~~~~p--~~D~v~~~~~ 133 (244)
.++.++||+|||+|.++++.++.... + ++++|+ |..++.++++ ..+. ....+..+... .+|+|+.+-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~-~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI- 237 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAK-K-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI- 237 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCc-e-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence 47799999999999999999987643 5 899999 9999998875 2233 22222222222 259988664
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
| .+-...+...+.+.|||||++++.-.... -.+.+.+.+.++||.+
T Consensus 238 L----A~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 238 L----AEVLVELAPDIKRLLKPGGRLILSGILED------------------------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred h----HHHHHHHHHHHHHHcCCCceEEEEeehHh------------------------------HHHHHHHHHHhCCCeE
Confidence 3 23356889999999999999998442110 0456788889999999
Q ss_pred EEEEEccceeEE
Q 041308 214 LRAFISIIFTLF 225 (244)
Q Consensus 214 ~~~~~~~~~~~~ 225 (244)
+++..-..=..+
T Consensus 284 ~~~~~~~eW~~i 295 (300)
T COG2264 284 VEVLEREEWVAI 295 (300)
T ss_pred eEEEecCCEEEE
Confidence 998776443333
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=91.94 Aligned_cols=139 Identities=19% Similarity=0.166 Sum_probs=99.9
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEe
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIG 115 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~ 115 (244)
.+++.+. .++..+||..|||.|.-+..|++++ .+ ++++|+ +..++.+.+ ..+|++.+
T Consensus 28 ~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~G--~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 28 EYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQG--HD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHT-TSTSEEEEETTTTTSCHHHHHHHTT--EE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHhcC-CCCCCeEEEeCCCChHHHHHHHHCC--Ce-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 3333333 5667899999999999999999875 46 999999 888877511 14689999
Q ss_pred CCCCCCCC----cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhh
Q 041308 116 GDMFKSIH----VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIY 190 (244)
Q Consensus 116 gd~~~~~p----~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~ 190 (244)
+|+|+.-+ ..|+|+=+..|+.++++.+.+-.+.+.+.|+|||+++++-...+... ..|+
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP---------------- 167 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP---------------- 167 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----------------
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------------
Confidence 99998522 24999999999999999999999999999999999444333222211 1111
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
-..+.+++++++. .+|++..+..
T Consensus 168 ----f~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 168 ----FSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --------HHHHHHHHT-TTEEEEEEEE
T ss_pred ----CCCCHHHHHHHhc-CCcEEEEEec
Confidence 1135789999997 8898877754
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-10 Score=94.48 Aligned_cols=124 Identities=17% Similarity=0.089 Sum_probs=86.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC--cceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH--VVDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p--~~D~v~~~~~ 133 (244)
.++.+|||+|||||.+++..++.+.. + ++++|+ |..++.|+++ .++.+. . ..+.+ .+|+|+.+-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~-~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAK-K-VVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANIL 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBS-E-EEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCC
Confidence 45689999999999999999987543 5 999999 9999888864 455442 1 22222 3599986643
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
. +....++..+.+.|+|||++++.-.... ..+++.+.+++ ||++
T Consensus 235 ~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~------------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 235 A-----DVLLELAPDIASLLKPGGYLILSGILEE------------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHT-TEEE
T ss_pred H-----HHHHHHHHHHHHhhCCCCEEEEccccHH------------------------------HHHHHHHHHHC-CCEE
Confidence 3 4456788999999999999998443211 14566777876 9999
Q ss_pred EEEEEccceeEEEee
Q 041308 214 LRAFISIIFTLFLSS 228 (244)
Q Consensus 214 ~~~~~~~~~~~~~~~ 228 (244)
.+......=..++..
T Consensus 279 ~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 279 VEEREEGEWVALVFK 293 (295)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEECCEEEEEEE
Confidence 888765544444433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=86.16 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=95.9
Q ss_pred HHHhccCC-CCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------C-----------
Q 041308 54 TSVLDGYD-GFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------P----------- 109 (244)
Q Consensus 54 ~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~----------- 109 (244)
+..++.++ .|-....+|||||..|.++..+++.+.... +.++|+ +..|..|++. .
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 33444443 356678999999999999999999998777 999999 9899888863 1
Q ss_pred -------------------Ce-------eEEeCCCCCC-CCcceEEEecccc---c-cCCHHHHHHHHHHHHHHcCCCCE
Q 041308 110 -------------------EV-------THIGGDMFKS-IHVVDAIFMKWVL---T-TWTDDECKLIMENYYKALLAGRK 158 (244)
Q Consensus 110 -------------------~i-------~~~~gd~~~~-~p~~D~v~~~~~l---h-~~~~~~~~~~l~~~~~~L~pgG~ 158 (244)
++ -+...|+.+. .|..|+|++-.+- | .|.|+-...+|+++.+.|.|||+
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 11 1122223322 3445777654332 2 36688899999999999999999
Q ss_pred EEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 159 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 159 lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
|++ |+ .+... +....+......+ ........++.+..++.+.+.-
T Consensus 205 Lvv-EP----QpWks-Y~kaar~~e~~~~---ny~~i~lkp~~f~~~l~q~~vg 249 (288)
T KOG2899|consen 205 LVV-EP----QPWKS-YKKAARRSEKLAA---NYFKIFLKPEDFEDWLNQIVVG 249 (288)
T ss_pred EEE-cC----CchHH-HHHHHHHHHHhhc---CccceecCHHHHHhhhhhhhhh
Confidence 986 22 21111 2221121111111 2334556788999999998433
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-10 Score=95.47 Aligned_cols=98 Identities=23% Similarity=0.250 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCC---c-ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIH---V-VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p---~-~D~ 127 (244)
+++.+||+||||+|..++.+++..+..+ ++++|+ +.+++.+++. +|++++.+|..+.++ . .|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 4568999999999999999997533446 999999 9999988852 689999999876432 2 499
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++...-+.-+... ...+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433222211 257899999999999998863
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=90.32 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=81.0
Q ss_pred HHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-
Q 041308 38 NGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG- 115 (244)
Q Consensus 38 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~- 115 (244)
++.|..+--+|...++..+...-+ +...++|+|||+|..++.++..+.+ +++.|. +.|++.+++.+++....
T Consensus 9 a~~Y~~ARP~YPtdw~~~ia~~~~---~h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t 82 (261)
T KOG3010|consen 9 AADYLNARPSYPTDWFKKIASRTE---GHRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHT 82 (261)
T ss_pred HHHHhhcCCCCcHHHHHHHHhhCC---CcceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccC
Confidence 456666666666555555554322 2338999999999888888876544 899999 99999999875543322
Q ss_pred ------CCCCCCC--Cc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC-EEEE
Q 041308 116 ------GDMFKSI--HV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR-KLIA 161 (244)
Q Consensus 116 ------gd~~~~~--p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG-~lii 161 (244)
.++.+.+ ++ -|+|++...+|.|.-+ .++++++|+||+.| .+.+
T Consensus 83 ~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 83 PSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred CccccccccccccCCCcceeeehhhhhHHhhchH---HHHHHHHHHcCCCCCEEEE
Confidence 1222222 22 3999999999998875 78999999999866 5544
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=88.62 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=72.1
Q ss_pred CcceEEEEcCCccHH--HHH--HHHHc----C-CCCeEEEeec-hHHHHhCCCC--------------------------
Q 041308 65 GVKRLVDVGGSAGDC--LRI--ILQKH----C-FICEGINFDL-PEVVAKAPSI-------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~--~~~--l~~~~----p-~~~~~~~~D~-~~~i~~a~~~-------------------------- 108 (244)
+.-+|...||+||.- +.+ +.+.. + ..+ +.+.|+ +.+++.|++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 557999999999983 333 22311 2 356 899999 9999998851
Q ss_pred --------CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 --------PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 --------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+|.|...|+.+. .+. .|+|+|+++|-+++++...++++++++.|+|||+|++-..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 5699999999983 222 4999999999999999999999999999999999999653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=99.06 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC-------------CCeeEEeCCCCCC---CCc-
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI-------------PEVTHIGGDMFKS---IHV- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~-------------~~i~~~~gd~~~~---~p~- 124 (244)
+++.+|||+|||+|..++.+++ +|. .+ ++.+|+ ++|++.++++ +|++++.+|.++. .+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 4568999999999999999996 465 56 999999 9999998871 6899999998764 233
Q ss_pred ceEEEeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...-...+.. -...+++++++.|||||.+++..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 4999987543221111 12368999999999999998753
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=87.99 Aligned_cols=130 Identities=21% Similarity=0.195 Sum_probs=93.7
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceEEEecccc--c--
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDAIFMKWVL--T-- 135 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~v~~~~~l--h-- 135 (244)
+|||+|||+|..++.+++..|+.+ ++++|+ +..++.|+++ .++.++.+|.++.++. .|+|+++--- .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 799999999999999999999999 999999 9999988864 4566777799988664 5988876321 1
Q ss_pred -cCCH------------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCcee
Q 041308 136 -TWTD------------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH 196 (244)
Q Consensus 136 -~~~~------------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 196 (244)
+..+ +-..+++.++.+.|+|||.+++ +...
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~------------------------------ 240 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL------------------------------ 240 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC------------------------------
Confidence 1111 2345688889999999888776 2210
Q ss_pred cCHHHHHHHHHhCC-CCeEEEEE-ccceeEEEeec
Q 041308 197 KTEQEFKQLGFSTG-FPHLRAFI-SIIFTLFLSSK 229 (244)
Q Consensus 197 ~t~~e~~~ll~~aG-f~~~~~~~-~~~~~~~~~~~ 229 (244)
-..+.+.+++.+.| |..+.... ..+...++.++
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 01567789999999 66555544 44444454444
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-09 Score=88.43 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=77.8
Q ss_pred cceEEEEcCCccHH--HHH--HHHHcC----CCCeEEEeec-hHHHHhCCCC----------------------------
Q 041308 66 VKRLVDVGGSAGDC--LRI--ILQKHC----FICEGINFDL-PEVVAKAPSI---------------------------- 108 (244)
Q Consensus 66 ~~~vLDvG~G~G~~--~~~--l~~~~p----~~~~~~~~D~-~~~i~~a~~~---------------------------- 108 (244)
.-+|...||+||.- +++ +.+..+ +++ +++.|+ +.+++.|++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 47999999999983 333 333222 467 999999 9999888741
Q ss_pred ---------CCeeEEeCCCCCC-CC--c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 109 ---------PEVTHIGGDMFKS-IH--V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 109 ---------~~i~~~~gd~~~~-~p--~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+|.|...|+.++ +| . .|+|+|++++.|++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3478889999884 44 2 499999999999999999999999999999999998854
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-10 Score=93.96 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=76.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
..+++.++ .++..+|||+|||+|.++..+++..+. .+ ++++|. +.+++.|++. +++.++.+|..+..+.
T Consensus 70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 34556565 677789999999999999999988753 46 899999 9998887752 5789999998765432
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...+++++ ..+.+.|+|||++++..
T Consensus 148 ~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 59999876655432 34567899999998854
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-09 Score=81.78 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=88.8
Q ss_pred ccccccCchHHHH----HHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHH
Q 041308 28 YSYYGKKPKMNGL----MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVV 102 (244)
Q Consensus 28 ~~~~~~~~~~~~~----f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i 102 (244)
.+....+|+..+. |++.+..+...-.+.+++.+...++...|-|+|||.+.++..+.+ ..+ +.-+|+ +.
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~-V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHK-VHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---Cce-EEEeeccCC--
Confidence 3345566665554 455555555444566777665234457999999999998866542 345 888897 31
Q ss_pred HhCCCCCCeeEEeCCCCC-CCCcc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh
Q 041308 103 AKAPSIPEVTHIGGDMFK-SIHVV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL 179 (244)
Q Consensus 103 ~~a~~~~~i~~~~gd~~~-~~p~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~ 179 (244)
+++ ++..|+.+ |++.. |+++++..|-.- +...+++|+.|+|||||.|.|.|...
T Consensus 105 -----n~~--Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S------------- 161 (219)
T PF05148_consen 105 -----NPR--VTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS------------- 161 (219)
T ss_dssp -----STT--EEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG-------------
T ss_pred -----CCC--EEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc-------------
Confidence 233 56688855 36653 999999888653 34689999999999999999988621
Q ss_pred hcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 180 LEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 180 ~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
+.-..+++.+.+++-||+...-..
T Consensus 162 ---------------Rf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 162 ---------------RFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp ---------------G-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred ---------------cCcCHHHHHHHHHHCCCeEEeccc
Confidence 111356778889999999888543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=91.79 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D~ 127 (244)
+++.+||+||||.|.+++.+++. |...+++.+|+ +.+++.+++. +|++++.+|..+. .+. .|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 55789999999999999999865 65543999999 8899988762 6899999997543 332 599
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++-..-+..+.. -...+++.++++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9986543322221 1347899999999999999764
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=83.46 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=81.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
...+++.++ .++..+|||||||+|..+.-+++..- + ++.++. +...+.|+++ .+|.++.||-...+|.
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 344777777 88999999999999999998888765 6 888998 8888888863 6799999999888775
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|.|+..-..-.+++. +.+.|+|||++++..-
T Consensus 137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 3999988877666652 4457899999999665
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=82.42 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=88.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--CCc-ceEEEecccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--IHV-VDAIFMKWVL 134 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~p~-~D~v~~~~~l 134 (244)
..+|||+|||.|.++..|++..-..+ .+++|- +..++.|+.. ..|+|.+.|++++ .+. .|+|+=.-++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34999999999999999999865555 788897 7777666531 3499999999996 333 4777754444
Q ss_pred ccCC------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 135 TTWT------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 135 h~~~------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
..++ ......-+..+.+.|+|||+++|..+ -+|..|+.+.++.
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~f~~ 195 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEEFEN 195 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHHHhc
Confidence 3322 11112346778889999999999544 2457788888888
Q ss_pred CCCCeEEEEEcc
Q 041308 209 TGFPHLRAFISI 220 (244)
Q Consensus 209 aGf~~~~~~~~~ 220 (244)
.||......+.+
T Consensus 196 ~~f~~~~tvp~p 207 (227)
T KOG1271|consen 196 FNFEYLSTVPTP 207 (227)
T ss_pred CCeEEEEeeccc
Confidence 888877765543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=89.74 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~-~D~v 128 (244)
+++.+||+||||+|.++..+++..+..+ ++++|+ +.+++.+++. ++++++.+|.++.+ +. .|+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 4456999999999999999987655556 999999 8998887752 57888888876532 22 4999
Q ss_pred EeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
++...-..-+... ...+++++++.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865532222221 357889999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=92.79 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=82.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---CCc--
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---IHV-- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~p~-- 124 (244)
++..++ ..++.+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ .+++++.+|+.+. .+.
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 444555 56678999999999999999999987778 999999 9999888754 2478899998764 222
Q ss_pred ceEEEeccc------cc-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 125 VDAIFMKWV------LT-------TWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 125 ~D~v~~~~~------lh-------~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.|.|++.-- +. ....++ ..++|+++.+.|||||++++..+.....
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 599984321 11 112211 2478999999999999999988765543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=87.23 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=76.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~ 124 (244)
...+++.++ +++..+|||||||+|.++.-++... +..+ ++.+|. +.+.+.|+++ .++.++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 345777777 8899999999999999999999875 3446 889999 9999888864 6899999998777655
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|.|++.......+. .+.+.|++||++++.-.
T Consensus 139 ~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp G-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 399999887765443 35567899999998543
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=93.48 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=82.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCC-C--C
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKS-I--H 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~-~--p 123 (244)
.++..++ ..++.+|||+|||+|..+..+++..+..+ ++++|. +.+++.++++ . ++.+..+|..+. . +
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3455555 56678999999999999999999887678 999999 9998887753 1 233466776543 1 2
Q ss_pred c--ceEEEec------cccccCCH-------H-------HHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 V--VDAIFMK------WVLTTWTD-------D-------ECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 ~--~D~v~~~------~~lh~~~~-------~-------~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
. .|.|++. .++++.++ + ...++|+++.+.|||||+++...+.....
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 2 4998852 34554433 1 13579999999999999999999877654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.8e-09 Score=83.59 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=91.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCHHHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~~~~ 142 (244)
...++||||+|.|..+..++..+.+ +.+-+. +.|....++ ..++++..|-....+ ..|+|.|-++|....++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 3578999999999999999977766 555577 777665554 455555543333323 25999999999876665
Q ss_pred HHHHHHHHHHcCCCCEEEEecccCC-----CCC--CchHHhhhhhcccHhhhhhhccCceec--CHHHHHHHHHhCCCCe
Q 041308 143 KLIMENYYKALLAGRKLIACEPVLP-----DDS--NESQRTRALLEGDIFVMTIYRAKGKHK--TEQEFKQLGFSTGFPH 213 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d~~~~-----~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~ 213 (244)
..+|+.++++|+|+|++++.=-..- ... ..++.+ .++ .. |..+ ....+-+.|+.+||++
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~-------~~-g~~~E~~v~~l~~v~~p~GF~v 235 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP-------VK-GATFEEQVSSLVNVFEPAGFEV 235 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC-------CC-CCcHHHHHHHHHHHHHhcCCEE
Confidence 5899999999999999987532111 100 001110 111 11 1111 1234448999999999
Q ss_pred EEEEEccc
Q 041308 214 LRAFISII 221 (244)
Q Consensus 214 ~~~~~~~~ 221 (244)
......+.
T Consensus 236 ~~~tr~PY 243 (265)
T PF05219_consen 236 ERWTRLPY 243 (265)
T ss_pred EEEeccCc
Confidence 99877653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-09 Score=81.70 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=73.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV--V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~--~ 125 (244)
+.+++.++ +.+..++||+|||+|.++..++++ ..+ ++++|. +.+++.++++ ++++++.+|+.+. .+. .
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 45677776 777789999999999999999987 356 999999 8898887753 5799999999875 444 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|.|+++...| ...+...+++++.. +.++|.+++..
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~~~--~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEEPP--AFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhcCC--CcceEEEEEEH
Confidence 8887765544 44443333433221 34667776643
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-09 Score=92.15 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=80.8
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceE
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDA 127 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~ 127 (244)
..++ ..++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .+++++.+|+.+..+. .|+
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~ 321 (445)
T PRK14904 244 LLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDA 321 (445)
T ss_pred HhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCE
Confidence 3444 45668999999999999999888654 456 999999 9999888753 4689999998764333 599
Q ss_pred EEecc------cc-------ccCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 128 IFMKW------VL-------TTWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 128 v~~~~------~l-------h~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|++-- ++ .++++++ ..++|+++.+.|||||+++...+.....
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 88521 11 1223222 2468999999999999999988776544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=98.55 Aligned_cols=94 Identities=16% Similarity=0.046 Sum_probs=72.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------------------CCeeEEeCCCCCCCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------------------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------------------~~i~~~~gd~~~~~p 123 (244)
.+|||+|||+|.+++.+++.+|..+ ++++|+ +.+++.|+++ +|++++.+|+++.++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5899999999999999999999888 999999 9999888532 379999999988753
Q ss_pred c----ceEEEecccc------ccCCH------------------------------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 V----VDAIFMKWVL------TTWTD------------------------------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ~----~D~v~~~~~l------h~~~~------------------------------~~~~~~l~~~~~~L~pgG~lii 161 (244)
. .|+|+++--- ..++. +-..++++++.+.|+|||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 4988876321 00000 0125678888889999998774
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-09 Score=92.14 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=83.6
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC---C
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI---H 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~---p 123 (244)
.++..++ ..++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .+++++.+|..+.. +
T Consensus 243 l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 243 LVAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence 3444555 56678999999999999999998754 457 999999 8898887753 56899999986532 1
Q ss_pred ----cceEEEec------cccccCCH-------HH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 ----VVDAIFMK------WVLTTWTD-------DE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 ----~~D~v~~~------~~lh~~~~-------~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
..|.|++. .++++-++ ++ ..++|+++.+.|||||+++...+.+...
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~ 390 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA 390 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 24999863 23443332 11 2588999999999999999988765543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=91.08 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=81.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~ 124 (244)
+...++ .+++.+|||+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+++++.+|+.+. ++.
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 444555 5667899999999999999999876 5677 999999 9888877653 4689999998764 333
Q ss_pred -ceEEEecccc------cc-------CCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 125 -VDAIFMKWVL------TT-------WTDDE-------CKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 125 -~D~v~~~~~l------h~-------~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.|+|++.--. .+ .+..+ ...+|+++.+.|||||+++...+....
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 5999864221 11 11111 246899999999999999987665443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=83.69 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=75.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---------c
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------V 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------~ 124 (244)
..+..+|||+|||+|..+..++...+ +.+ ++.+|. +.+++.|+++ ++++++.||+.+.++ .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 45678999999999999999988765 567 999999 8888888763 689999999976421 2
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|++-. ..+.-...+..+.+.|+|||.+++-+..
T Consensus 145 fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 145 FDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 49987642 2244567899999999999987764443
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.8e-08 Score=78.18 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=95.9
Q ss_pred cccCchHHH----HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCC
Q 041308 31 YGKKPKMNG----LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAP 106 (244)
Q Consensus 31 ~~~~~~~~~----~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~ 106 (244)
...+|+.-+ .|+..+..+...-.+.+++.+..-+....|-|+|||.+.++. . -..+ +..+|+-.+
T Consensus 142 fkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~----~-~~~k-V~SfDL~a~----- 210 (325)
T KOG3045|consen 142 FKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS----S-ERHK-VHSFDLVAV----- 210 (325)
T ss_pred HhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh----c-cccc-eeeeeeecC-----
Confidence 334444444 445555555555567777777634556799999999998876 1 1224 888897322
Q ss_pred CCCCeeEEeCCCCC-CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhccc
Q 041308 107 SIPEVTHIGGDMFK-SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGD 183 (244)
Q Consensus 107 ~~~~i~~~~gd~~~-~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d 183 (244)
++ .++..|+.+ |++. .|+++++..|.. .+...++++++|+|+|||.++|.|...
T Consensus 211 -~~--~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S----------------- 267 (325)
T KOG3045|consen 211 -NE--RVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS----------------- 267 (325)
T ss_pred -CC--ceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh-----------------
Confidence 23 445567766 3554 399998888754 334689999999999999999988621
Q ss_pred HhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 184 IFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 184 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
+.-+...+.+.+...||.+......
T Consensus 268 -----------Rf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 268 -----------RFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred -----------hcccHHHHHHHHHHcCCeeeehhhh
Confidence 1122445778889999998876443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=80.65 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHHcccccc----hHHHhccCCCCCCcceEEEEcCCccHHHHHHHH-HcCCCCeEEEeec-hHHHHhCCC
Q 041308 34 KPKMNGLMRKAMSRVFVPF----MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQ-KHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~----~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
.|...+.+.. |.+..+.+ +..++.... .+++.+|+|.|.|+|.++..|+. ..|..+ ++.+|. ++..+.|++
T Consensus 61 ~p~~~d~~~~-~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~ 137 (256)
T COG2519 61 KPTPEDYLLS-MKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARE 137 (256)
T ss_pred CCCHHHHHHh-CcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHH
Confidence 3455555555 66666544 334667776 89999999999999999999997 457788 999999 999999987
Q ss_pred C-------CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 108 I-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 108 ~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+ +++++..+|..+. .+. .|+|++- ++++. ..+.++.++|+|||.+++.-++.+
T Consensus 138 Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LD-----mp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 138 NLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLD-----LPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred HHHHhccccceEEEeccccccccccccCEEEEc-----CCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 5 5699999999887 333 4888854 55553 789999999999999999776543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=86.27 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=70.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------------CCeeEEeCCCCCC-----C
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------------PEVTHIGGDMFKS-----I 122 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------------~~i~~~~gd~~~~-----~ 122 (244)
+..+|||+|||.|.=+.--.+.. ++..+++|+ +..|+.|+++ -...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999888666665543 333899999 8788777642 1357788998754 2
Q ss_pred C-c---ceEEEecccccc-CC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 123 H-V---VDAIFMKWVLTT-WT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 123 p-~---~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ . .|+|-+.+.+|+ +. .+.+..+|+++.+.|+|||+++..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 2 399999999998 44 556777999999999999999875
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-09 Score=82.94 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=68.8
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------CCCeeEEeCCCCCC----CCcc--eEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------IPEVTHIGGDMFKS----IHVV--DAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~~~i~~~~gd~~~~----~p~~--D~v~~~~~ 133 (244)
.-+||||||.|.++..+++.+|+.. ++|+|+ ...+..+.+ ..++.++.+|+..- ++.+ |-|.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 4889999999999999999999999 999999 766665543 38999999999773 3432 655544
Q ss_pred cccCCHHH-----------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDDE-----------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~-----------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+||+- ...+++.++++|+|||.|.+...
T Consensus 96 ---FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 96 ---FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred ---CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 23221 13689999999999999998653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-07 Score=77.53 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=81.2
Q ss_pred CcceEEEEcCCccH----HHHHHHHHcC-----CCCeEEEeec-hHHHHhCCCC--------------------------
Q 041308 65 GVKRLVDVGGSAGD----CLRIILQKHC-----FICEGINFDL-PEVVAKAPSI-------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-~~~i~~a~~~-------------------------- 108 (244)
+.-+|.-.||+||. +|..+.+..| .++ +++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 36799999999997 3444455554 466 899999 9999998851
Q ss_pred ---------CCeeEEeCCCCCCC--Cc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 ---------PEVTHIGGDMFKSI--HV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 ---------~~i~~~~gd~~~~~--p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|.|...|++++. +. .|+|+|++||-.++.+...+++++++..|+|||.|++-..
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 34889999998873 23 4999999999999999999999999999999999999543
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-09 Score=81.45 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=76.0
Q ss_pred chHHHhccCCCCCC--cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc---
Q 041308 52 FMTSVLDGYDGFKG--VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--- 124 (244)
..+.-++.++ +++ ..-|||||||+|..+..+.+.. .. .+++|+ |.|++.|.+. -.-.++.+|+-+.+|.
T Consensus 36 m~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~G--h~-wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpG 111 (270)
T KOG1541|consen 36 MAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDSG--HQ-WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPG 111 (270)
T ss_pred HHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccCC--ce-EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCC
Confidence 3444455555 444 6899999999999998888654 34 899999 9999999863 1246777888776553
Q ss_pred -ceEEEecccc----c-----cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 -VDAIFMKWVL----T-----TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 -~D~v~~~~~l----h-----~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|.+++...+ | |.+......++..++.+|++|++.++.
T Consensus 112 tFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 112 TFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 3877754443 2 223344556788899999999999874
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=85.15 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=79.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------C----CeeEEeCCCCCC
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------P----EVTHIGGDMFKS 121 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~----~i~~~~gd~~~~ 121 (244)
.|+..| .++...++|+|||.|.=++.--+.. +.+.+++|+ .-.|+.|+++ . ...|+++|.+..
T Consensus 109 ~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLY--TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHH--hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 355555 3677899999999998777666554 333899999 7677777753 1 368899999754
Q ss_pred -----C----CcceEEEecccccc-CC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 122 -----I----HVVDAIFMKWVLTT-WT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 122 -----~----p~~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ |..|+|-+.+++|. |. .+++.-+|+|+.+.|+|||.+|-.
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 3 12599999999997 44 556788899999999999999863
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=79.94 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=71.7
Q ss_pred cceEEEEcCCccHHHHHHHHHc---CCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-ceEEEeccccccCC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH---CFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~ 138 (244)
..+|||+|||+|.++..++++. +..+ ++++|+ +.+++.|+++ +++.++.+|+... +.. .|+|+++--.+-..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 5799999999999999999874 3567 999999 9999999876 6789999999764 332 59999886665322
Q ss_pred H----------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 139 D----------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 139 ~----------~~~~~~l~~~~~~L~pgG~lii 161 (244)
. .-...+++++.+.++||+ +++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 1 123458889998666655 454
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=82.12 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=78.9
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCcceE
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHVVDA 127 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~~D~ 127 (244)
.++ .+++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .++++..+|.... .+..|.
T Consensus 66 ~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 66 ALE-PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence 344 56678999999999999999998764 356 999999 9888877653 5688888887542 223698
Q ss_pred EEecc------ccc-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 128 IFMKW------VLT-------TWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 128 v~~~~------~lh-------~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|++.- ++. .+++++ ..++|+++.+.|||||+++...+.....
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 88632 111 122221 2469999999999999999887765543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-08 Score=87.06 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=81.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~ 124 (244)
+...++ ..++.+|||+|||+|..+.++++.. +..+ ++++|+ +.+++.++++ .++++..+|..+. .+.
T Consensus 229 ~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 229 VPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc
Confidence 444455 5677899999999999999999875 4567 999999 9999888753 4688999998643 122
Q ss_pred -ceEEEecc---ccccC----------CHH-------HHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 125 -VDAIFMKW---VLTTW----------TDD-------ECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 125 -~D~v~~~~---~lh~~----------~~~-------~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.|.|++.- .+..+ +.+ ...++|.++.+.|||||+++...+.+...
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 49988621 11111 111 12578999999999999999888876544
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-08 Score=78.51 Aligned_cols=112 Identities=19% Similarity=0.334 Sum_probs=69.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------------CCCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---------------IPEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------------~~~i~~~~g 116 (244)
+..+++.+. +.+...++|+|||.|......+-..+ +++++|+++ +...+.|+. ..++++..+
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344667776 78889999999999999888886664 444899998 665554432 257889999
Q ss_pred CCCCC------CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 117 DMFKS------IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 117 d~~~~------~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|+.+. +..+|+|++++.+ |+++-. ..|++....||||.+++......+..
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~-~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTC--FDPDLN-LALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TT--T-HHHH-HHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred CccccHhHhhhhcCCCEEEEeccc--cCHHHH-HHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 99875 2347999999886 666654 44577888899999988766655543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-08 Score=79.80 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=91.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
..++-.++ +.++.+|||.|.|+|.++..|++. .|..+ +.-+|. ++..+.|+++ .++++..+|..+. ++
T Consensus 30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 34777787 899999999999999999999975 57888 999999 8888888863 6899999998654 42
Q ss_pred -----cceEEEeccccccCCHHHHHHHHHHHHHHc-CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceec
Q 041308 124 -----VVDAIFMKWVLTTWTDDECKLIMENYYKAL-LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHK 197 (244)
Q Consensus 124 -----~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L-~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 197 (244)
..|+|++- ++++. ..+.++.++| +|||++++.-+++.+
T Consensus 108 ~~~~~~~DavfLD-----lp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------------------- 151 (247)
T PF08704_consen 108 EELESDFDAVFLD-----LPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ----------------------------- 151 (247)
T ss_dssp TT-TTSEEEEEEE-----SSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------
T ss_pred ccccCcccEEEEe-----CCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------
Confidence 24988864 45443 6789999999 899999997653321
Q ss_pred CHHHHHHHHHhCCCCeEEEEEcc
Q 041308 198 TEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 198 t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.....+.|++.||..+++..+.
T Consensus 152 -v~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 152 -VQKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEEE
T ss_pred -HHHHHHHHHHCCCeeeEEEEEE
Confidence 1223455677899888765553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=72.15 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=93.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCC-CCCeeEEeCCCCCC---CC--
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPS-IPEVTHIGGDMFKS---IH-- 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~-~~~i~~~~gd~~~~---~p-- 123 (244)
.++.++...+ +..+.-||++|.|||.++.+++++.- .-. .+.++. ++......+ .+.++++.||.+.. +.
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 4666777787 88889999999999999999998864 344 788887 877777665 48888999998754 22
Q ss_pred ---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 124 ---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 124 ---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..|.|++..-+-.++.....++|+.+...|++||.++-....
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 249999999999999999999999999999999999987764
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.3e-08 Score=85.94 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=70.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC--
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI-- 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~-- 122 (244)
+.+.+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ .+++++.+|+.+.+
T Consensus 285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 3444555554 5566899999999999999999875 46 999999 9999988863 57999999986532
Q ss_pred ---Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 123 ---HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 123 ---p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+. .|+|++.---.. ...+++.+.+ ++|++.+++
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEE
Confidence 12 499887533222 1234455544 688777666
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=78.83 Aligned_cols=92 Identities=18% Similarity=0.110 Sum_probs=74.3
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEeccccccC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTW 137 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~ 137 (244)
.-|||||||+|.++...++.+. -+ +..++..+|.+.|++. +||.++.|-+.+- +|+ .|++++.-+=..+
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA-~~-vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGA-KK-VYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCc-ce-EEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 7899999999999888777653 35 8999999999998862 8999999999774 888 5999977665555
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~li 160 (244)
-.+....-.-.+++.|+|.|+.+
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCccc
Confidence 56666666667889999998875
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=78.76 Aligned_cols=114 Identities=16% Similarity=0.269 Sum_probs=81.3
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeE--EeCCCCC---C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTH--IGGDMFK---S 121 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~--~~gd~~~---~ 121 (244)
++.++....+.|. +.+|||+|+|+|.-+.++...++....++++|. +.|++.++.. ..... ...++.. +
T Consensus 21 vl~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 3445555555344 479999999999999888888886655899999 8888877642 11110 1111211 1
Q ss_pred CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 122 IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 122 ~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
++..|+|++.++|-.+++++...+++++.+.+++ .|+|+|...+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 3335999999999999998888899999888766 99999975443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-07 Score=73.40 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=89.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC---CCc--ceEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS---IHV--VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~---~p~--~D~v 128 (244)
.+...+|||.+.|-|.+++..+++.. .+ ++-++- |.+++.|+-+ .+|+++.||+.+- +++ .|+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~-VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IH-VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cE-EEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 35678999999999999999998864 35 777777 9999988865 4689999998764 554 3887
Q ss_pred Eeccc-cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 129 FMKWV-LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 129 ~~~~~-lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
+---- +-+-..--...+.++++|+|||||+++=.-...... .+-.| -...+.+.|+
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d--------------~~~gVa~RLr 266 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLD--------------LPKGVAERLR 266 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCC--------------hhHHHHHHHH
Confidence 72100 000001123578999999999999997433211111 01112 1456788999
Q ss_pred hCCCCeEEEEEc
Q 041308 208 STGFPHLRAFIS 219 (244)
Q Consensus 208 ~aGf~~~~~~~~ 219 (244)
++||.+++...-
T Consensus 267 ~vGF~~v~~~~~ 278 (287)
T COG2521 267 RVGFEVVKKVRE 278 (287)
T ss_pred hcCceeeeeehh
Confidence 999998776443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=77.33 Aligned_cols=90 Identities=9% Similarity=0.190 Sum_probs=65.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCcce
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHVVD 126 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~~D 126 (244)
.+.+++..+ ..+..+|||+|||+|.++..++++.+ + ++++|. +.+++.+++. ++++++.+|+.+. ++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 455666666 67779999999999999999999875 4 888998 8888877653 6899999999875 44444
Q ss_pred ---EEEeccccccCCHHHHHHHHHHHHH
Q 041308 127 ---AIFMKWVLTTWTDDECKLIMENYYK 151 (244)
Q Consensus 127 ---~v~~~~~lh~~~~~~~~~~l~~~~~ 151 (244)
+|+.+ .-+|++. .++.++..
T Consensus 94 ~~~~vvsN-lPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSN-LPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEc-CChhhHH----HHHHHHhc
Confidence 45443 3334443 44555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-07 Score=77.72 Aligned_cols=84 Identities=11% Similarity=0.149 Sum_probs=65.2
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCcc
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHVV 125 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~~ 125 (244)
+++.+++.++ ..+..+|||||||+|.++..++++. .+ ++++|+ +.+++.+++. ++++++.+|+.+. ++..
T Consensus 17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 3455666665 6677899999999999999999884 46 999999 8898887753 6799999999874 6666
Q ss_pred eEEEeccccccCCHH
Q 041308 126 DAIFMKWVLTTWTDD 140 (244)
Q Consensus 126 D~v~~~~~lh~~~~~ 140 (244)
|.|+++.-. +++.+
T Consensus 93 d~Vv~NlPy-~i~s~ 106 (258)
T PRK14896 93 NKVVSNLPY-QISSP 106 (258)
T ss_pred eEEEEcCCc-ccCcH
Confidence 888876654 44433
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-08 Score=79.89 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=85.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------------------C------------C
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------------------I------------P 109 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------------------~------------~ 109 (244)
.+.++||||||+-.+- ++...+..+.++..|. +.-.+..++ . .
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999986552 2222233333666675 433321110 0 1
Q ss_pred Ce-eEEeCCCCCC--C------Cc-ceEEEeccccccCC--HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh
Q 041308 110 EV-THIGGDMFKS--I------HV-VDAIFMKWVLTTWT--DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR 177 (244)
Q Consensus 110 ~i-~~~~gd~~~~--~------p~-~D~v~~~~~lh~~~--~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~ 177 (244)
.| .++..|.+++ + |. +|+|++.++|.... .++-.+.++++.++|||||.|+++...-... +..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-----Y~v 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-----YMV 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-----EEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-----EEE
Confidence 23 3666787764 2 33 69999999997644 5567789999999999999999987632211 100
Q ss_pred hhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc-c----ceeEEEeecC
Q 041308 178 ALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS-I----IFTLFLSSKS 230 (244)
Q Consensus 178 ~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~----~~~~~~~~~~ 230 (244)
... .......+.+.+++.++++||.+.+.+.. . -...+++|+|
T Consensus 209 G~~----------~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 209 GGH----------KFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp TTE----------EEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred CCE----------ecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 000 11122347899999999999999998741 0 1345666654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-08 Score=85.75 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=81.4
Q ss_pred cccccccCchHHHHHHHHHHcccccchHHHhccCCCC---CCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeec-
Q 041308 27 AYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGF---KGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDL- 98 (244)
Q Consensus 27 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~- 98 (244)
.||..++|+...+.|.+|+.. .+.+....- .....|||||||+|-++...++.. ...+ +++++.
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCC
Confidence 377888999888889988753 222222201 124689999999999987776653 3456 999997
Q ss_pred hHHHHhCC----C---CCCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 99 PEVVAKAP----S---IPEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 99 ~~~i~~a~----~---~~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
+..+...+ + .++|+++.+|+.+- +|+ +|+||+..+=.....+-....|....|.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 65443322 1 28899999999875 665 699998766432223334566888889999997765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=80.81 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=72.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCCC---c-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSIH---V-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~p---~-~D~v 128 (244)
+++.+||.||+|.|..++.+++..+..+ ++.+|+ +.+++.+++. +|++++.+|.++.+. . .|+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3568999999999999999997655556 999999 9999999852 689999999876532 2 4999
Q ss_pred EeccccccCC---HH--HHHHHHH-HHHHHcCCCCEEEE
Q 041308 129 FMKWVLTTWT---DD--ECKLIME-NYYKALLAGRKLIA 161 (244)
Q Consensus 129 ~~~~~lh~~~---~~--~~~~~l~-~~~~~L~pgG~lii 161 (244)
++-.. .-.. .. -...+++ .+.+.|+|||.+++
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 97631 1110 00 0236777 89999999999876
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=86.78 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=72.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCC---C-cceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSI---H-VVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~---p-~~D~v~~~ 131 (244)
.+.+|||+|||||.++..+++.. ..+ ++++|. +.+++.++++ .+++++.+|.++.+ + ..|+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 45899999999999999999863 336 999999 9999988863 37999999987643 2 25999985
Q ss_pred cccc-------c-CC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLT-------T-WT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh-------~-~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
---. . +. ...-..+++.+.+.|+|||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 2210 0 00 122356889999999999998874
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=75.48 Aligned_cols=95 Identities=7% Similarity=-0.045 Sum_probs=66.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~ 132 (244)
.+..++||+|||+|.++..++.+.. .+ ++++|. +..++.++++ .+++++.+|+++.++ ..|+|++.-
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 3457999999999999998766653 46 999999 8888777653 578999999876432 259999887
Q ss_pred ccccCCHHHHHHHHHHHHH--HcCCCCEEEEec
Q 041308 133 VLTTWTDDECKLIMENYYK--ALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d 163 (244)
-.+.--. ..+++.+.+ .|+|++.+++-.
T Consensus 130 Py~~g~~---~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 130 PFRKGLL---EETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCChH---HHHHHHHHHCCCcCCCcEEEEEe
Confidence 7433112 234444443 378888777643
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=76.10 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=70.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCcc--eEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHVV--DAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~~--D~v~~~~~ 133 (244)
.-+||||||.|.+...+++++|+.. ++|+++ ...+..+-+. .++.++++|+.+- .+.+ |-|.+.+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5799999999999999999999999 999998 6555554431 4899999998653 3332 55554432
Q ss_pred c------ccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 L------TTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 l------h~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
= ||=..=-...+++.+.+.|+|||.|.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 2 21000011368999999999999999964
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=77.85 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=62.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCcc--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHVV-- 125 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~~-- 125 (244)
++.+++.++ ..+..+|||+|||+|.++..++++.+ + ++++|. +.|++.+++. ++++++.+|+.+. ++..
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 445666666 67778999999999999999999875 6 999999 9999988764 6899999999764 4432
Q ss_pred eEEEeccccccCCH
Q 041308 126 DAIFMKWVLTTWTD 139 (244)
Q Consensus 126 D~v~~~~~lh~~~~ 139 (244)
|.|+.+.- ++.+.
T Consensus 107 ~~vv~NlP-Y~iss 119 (272)
T PRK00274 107 LKVVANLP-YNITT 119 (272)
T ss_pred ceEEEeCC-ccchH
Confidence 66665543 33443
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-07 Score=76.79 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=92.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEe----CCCCCCC--Cc--ceE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIG----GDMFKSI--HV--VDA 127 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~----gd~~~~~--p~--~D~ 127 (244)
...++||||||+|.....++.+.++.+ ++++|+ +..++.|+++ .+|++.. .++++.+ +. .|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457999999999999888888888899 999999 9999988853 3677653 2334432 22 499
Q ss_pred EEeccccccCCHHH---HHHHHHHHH----------------HHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh
Q 041308 128 IFMKWVLTTWTDDE---CKLIMENYY----------------KALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT 188 (244)
Q Consensus 128 v~~~~~lh~~~~~~---~~~~l~~~~----------------~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~ 188 (244)
|+++--+|.-..+. ...-.++.. +.+.+||.+-++.....+. ...... .....
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS---~~~~~~-~gwft---- 264 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES---KAFAKQ-VLWFT---- 264 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH---HHHHhh-CcEEE----
Confidence 99998887543331 111222222 3344667766655544332 100000 00011
Q ss_pred hhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 189 IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 189 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..=++.-+.+.+.+.|++.|...+.+..+.
T Consensus 265 --smv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 265 --SLVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --EEeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 111444588999999999999888887764
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=69.00 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=92.6
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCC-CCCc-----ceEEEeccccccCC-
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK-SIHV-----VDAIFMKWVLTTWT- 138 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~-~~p~-----~D~v~~~~~lh~~~- 138 (244)
..++|||||=+..+... ..+-+. ++.+|+.. +.+ .+...||++ ++|. .|+|.++.||..++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fd-vt~IDLns------~~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFD-VTRIDLNS------QHP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCcee-eEEeecCC------CCC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 36999999886654443 235567 89999832 123 345678887 4663 49999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCE-----EEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 139 DDECKLIMENYYKALLAGRK-----LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~-----lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+.++-.+++++++.|+|+|. ++++-+. . ...+++..+.+.|.++++.-||..
T Consensus 120 p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~---~--------------------Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL---P--------------------CVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHHhCCCCccCcceEEEEeCc---h--------------------HhhcccccCHHHHHHHHHhCCcEE
Confidence 55677899999999999999 7776431 1 124566778999999999999999
Q ss_pred EEEEEccceeEEE
Q 041308 214 LRAFISIIFTLFL 226 (244)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (244)
++.+...--..++
T Consensus 177 ~~~~~~~Kl~y~l 189 (219)
T PF11968_consen 177 VKYKKSKKLAYWL 189 (219)
T ss_pred EEEEecCeEEEEE
Confidence 9987765444333
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=75.74 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=76.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---------c
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------V 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------~ 124 (244)
..+..+|||||+++|..+..+++..| +.+ ++.+|. +...+.|+++ ++|+++.||..+.++ .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45679999999999999999998765 556 899999 8888888753 689999999876432 2
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++-. ...+-...+..+.+.|+|||.+++=+...
T Consensus 195 FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 195 YDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 48887653 23456788999999999999987644433
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-06 Score=68.87 Aligned_cols=138 Identities=20% Similarity=0.173 Sum_probs=83.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHH-hCCCCCCee-EEeCCCCCC----C---
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVA-KAPSIPEVT-HIGGDMFKS----I--- 122 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~-~a~~~~~i~-~~~gd~~~~----~--- 122 (244)
...+++.++......++||+|||||.++..+++.. .-+ ++++|. +.|+. ..++.+++. +...|+... +
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~-v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKE-VYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCE-EEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 34466665522355799999999999999999873 345 999999 75555 456666654 334455421 1
Q ss_pred -CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE-ecccCCCCCCchHHhhhhhcccHhhhhhhccCcee----
Q 041308 123 -HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA-CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH---- 196 (244)
Q Consensus 123 -p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii-~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 196 (244)
+..|+++++.. .+|..+.++|+| |.+++ +-+-..-. + ... ..+|..
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~---~------~~~--------~~~giv~~~~ 192 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAG---R------EKK--------NKKGVVRDKE 192 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhc---H------hhc--------CcCCeecCHH
Confidence 12365554433 357889999999 66554 32211100 0 000 012222
Q ss_pred ---cCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 197 ---KTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 197 ---~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+++...+.+.||++..+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 193 AIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 235677788889999988887654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.50 E-value=8e-08 Score=76.96 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---------cc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------VV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------~~ 125 (244)
.+..+||+||+++|..+..+++..| +.+ ++.+|. +...+.|++. ++|+++.||..+.++ ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 3578999999999999999999887 467 999999 8888888753 689999999875422 24
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|+|++-.- ..+-...+..+.+.|+|||.+++=+...
T Consensus 123 D~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 99887643 2344677889999999999888755443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-07 Score=75.60 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~-~D~v 128 (244)
+++.+||-||+|.|..++++++..+--+ ++.+|+ +.+++.+++. +|++++.+|..+- .+. .|+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 4447999999999999999998876556 999999 9999999963 7899999998764 333 5999
Q ss_pred EeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++-..=. ..+. -...+++.++++|+|+|.++..
T Consensus 154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8664432 1110 0247899999999999999986
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.9e-07 Score=73.62 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=69.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC-CcceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI-HVVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~-p~~D~v~~ 130 (244)
-+++.+||=||||.|..++++++. |. + ++.+|+ +.|++.+++. +|++++. .+.+.- ...|+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEE
Confidence 356799999999999999999965 54 7 999999 9999999872 7888876 222222 23599997
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
-.. + + ..+.+.++++|+|||.++..
T Consensus 146 Ds~---~-~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 146 LQE---P-D---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred cCC---C-C---hHHHHHHHHhcCCCcEEEEC
Confidence 753 2 2 36789999999999999974
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=79.39 Aligned_cols=99 Identities=18% Similarity=0.084 Sum_probs=71.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-------cceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-------VVDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-------~~D~ 127 (244)
.++.+|||+|||+|.++...+.. ...+ ++++|. +.+++.++++ .+++++.+|+++.+. ..|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 34689999999999998876653 3346 999999 9999888753 268999999987421 2599
Q ss_pred EEeccccccCCHH-------HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDD-------ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~-------~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|++.--.-.-+.. .-..+++.+.+.|+|||.++...+
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9987443111111 123456678899999999998664
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.1e-07 Score=72.64 Aligned_cols=98 Identities=12% Similarity=-0.018 Sum_probs=68.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEe----CCCCCCCC--cc--eE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIG----GDMFKSIH--VV--DA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~----gd~~~~~p--~~--D~ 127 (244)
.....+||+|||+|..+..++...|..+ ++++|. +..+..|.++ .++.++. .|...+.+ .+ |+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 4456899999999999999999999999 999999 7777777654 6777774 44444322 22 77
Q ss_pred EEecccc--cc----C-------C-----------HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVL--TT----W-------T-----------DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~l--h~----~-------~-----------~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++--. +. + . .+....++.-+.|.|+|||.+.+-
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 7766321 11 0 0 112334667778899999988863
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-07 Score=75.37 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=66.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-------CCCeeEEeCCCCCC-C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-------IPEVTHIGGDMFKS-I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-------~~~i~~~~gd~~~~-~ 122 (244)
+++.+++..+ ..+..+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++ .++++++.+|+.+. +
T Consensus 24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--Cc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 3445666666 6777899999999999999999875 35 999999 999988764 26799999999875 5
Q ss_pred CcceEEEeccccccCCHHHHHHHH
Q 041308 123 HVVDAIFMKWVLTTWTDDECKLIM 146 (244)
Q Consensus 123 p~~D~v~~~~~lh~~~~~~~~~~l 146 (244)
+..|.|+.+.- .+++.+...++|
T Consensus 100 ~~~d~VvaNlP-Y~Istpil~~ll 122 (294)
T PTZ00338 100 PYFDVCVANVP-YQISSPLVFKLL 122 (294)
T ss_pred cccCEEEecCC-cccCcHHHHHHH
Confidence 55687776544 445554444444
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-07 Score=72.10 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=78.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEe-CCCCCCCC-----cceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIG-GDMFKSIH-----VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~-gd~~~~~p-----~~D~ 127 (244)
.++..+||+||.+.|..+..++...| +.+ ++.+|. +++.+.|+++ ++|.+.. ||..+.+. ..|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 56789999999999999999999999 777 999999 9999999874 6788888 58765422 2498
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|++-. ...+-...|..+.+.|+|||.+++-+...+
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 88652 234456889999999999998886544443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.3e-07 Score=80.06 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=69.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-- 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-- 123 (244)
.+.+.+.+. .++..+|||+|||+|.++..+++... + ++++|. +.+++.|+++ .+++++.+|+.+.++
T Consensus 281 ~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 281 VDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--S-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--E-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 344444444 56668999999999999999997643 5 999999 9999988863 589999999864321
Q ss_pred ----c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 ----V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ----~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
. .|+|++.--=-.+. ..+++.+. .++|++.+++
T Consensus 357 ~~~~~~~D~vi~dPPr~G~~----~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGCA----AEVLRTII-ELKPERIVYV 394 (431)
T ss_pred HhcCCCCCEEEECcCCCCCC----HHHHHHHH-hcCCCEEEEE
Confidence 1 48888643311111 24555544 4889876665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=63.35 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=68.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC----cceE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH----VVDA 127 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p----~~D~ 127 (244)
+.+.+.++ -....++||||||+|. .+..|.+.. .+ ++++|. +..++.+++ ..++++.+|.+++-+ .+|+
T Consensus 6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G--~~-ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKESG--FD-VIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHCC--CE-EEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCE
Confidence 34555554 3345799999999996 777777653 46 999999 888888876 457999999999833 2599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|.... ++.+...-+.++++.. |.-++|...
T Consensus 81 iysir-----pp~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 81 IYSIR-----PPRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred EEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 88663 3444555556666533 566666544
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.3e-07 Score=73.07 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=78.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v 128 (244)
...+++.++ ...-++|+|||.|.+.. ..|.+. .+++|+ ...+..+++.....+...|+.+. .++ .|..
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky~~----~~p~~~-~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKYLG----VNPLCL-IIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred HHHHHhccC---CcceeeecccCCcccCc----CCCcce-eeecchhhhhccccccCCCceeehhhhhcCCCCCCccccc
Confidence 334444443 36789999999996654 447778 999999 88888888754435677888775 443 4999
Q ss_pred EeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...++||+... ....+++++.|.|+|||...+.-+
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999999998854 466789999999999999776533
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7e-07 Score=75.55 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=71.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEeccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh 135 (244)
...|||||||||.++...++.+ ..+ +.++|...+.+.|++. ..|+++.|...+- +|. -|+|++.|.=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 4899999999999999999987 446 9999998888877752 5689999988664 774 39999988877
Q ss_pred cCCHHH-HHHHHHHHHHHcCCCCEEE
Q 041308 136 TWTDDE-CKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 136 ~~~~~~-~~~~l~~~~~~L~pgG~li 160 (244)
.+--+. ...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 655332 2233333447899999875
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.9e-07 Score=69.71 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=70.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-C-CCCeEEEeec-hHHHHhCCCC----------------CCeeEEeCCCCCCCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-C-FICEGINFDL-PEVVAKAPSI----------------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p-~~~~~~~~D~-~~~i~~a~~~----------------~~i~~~~gd~~~~~p 123 (244)
+.++.+.||+|+|+|.++..++... + ... .+++|. |++++.++++ .+..++.||.....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 5678999999999999998888543 2 322 488999 9999888763 567899999988755
Q ss_pred c---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 124 V---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 124 ~---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ .|.|.+-..- .++.+++...|+|||+++|.
T Consensus 159 e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe
Confidence 4 4998876322 35567888889999999984
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.1e-07 Score=69.77 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=65.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC---------CCCeeEEeCCCCCCC-----C--cce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS---------IPEVTHIGGDMFKSI-----H--VVD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~---------~~~i~~~~gd~~~~~-----p--~~D 126 (244)
...+.+|||+|||+|..+..+++..+..+ ++.-|.++.++..+. ..++.+...|.-++. . ..|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 34568999999999999999998865566 888898446654442 266788888775532 2 259
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+|+.+.+++. ++....+++-+.+.|+|+|.+++.....
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999975 5556789999999999998888776654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-06 Score=72.09 Aligned_cols=109 Identities=10% Similarity=0.163 Sum_probs=79.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeec-hHHHHhCCC------CCCeeE--EeCCCCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDL-PEVVAKAPS------IPEVTH--IGGDMFK 120 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~-~~~i~~a~~------~~~i~~--~~gd~~~ 120 (244)
.++++.+ .+...++|+|||.|.=+..|++.. ...+ .+.+|+ ..+++.+.+ .+.+.+ +.||+.+
T Consensus 68 ~~Ia~~i---~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASI---PSGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhc---CCCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 3455554 345689999999999877776654 3466 899999 667766543 255665 7899866
Q ss_pred C---CCc------ceE-EEeccccccCCHHHHHHHHHHHHH-HcCCCCEEEE-ecccC
Q 041308 121 S---IHV------VDA-IFMKWVLTTWTDDECKLIMENYYK-ALLAGRKLIA-CEPVL 166 (244)
Q Consensus 121 ~---~p~------~D~-v~~~~~lh~~~~~~~~~~l~~~~~-~L~pgG~lii-~d~~~ 166 (244)
. ++. ..+ +++..++.+++++++..+|+++++ .|+||+.++| +|...
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 4 321 244 446689999999999999999999 9999998888 35443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=67.39 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=55.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCcceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
.+.+|+|+|||||.+++..+-..|. + ++++|+ |+.++.++++ .++.|+..|..+.-...|.++++--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~-V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-R-VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-E-EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 4578999999999999999877664 5 899999 9999999976 57999999985544445778777555
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-06 Score=71.36 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=73.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC----------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------- 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------- 123 (244)
..+..+||+||+++|..+..+++..| +.+ ++.+|. +...+.|++. ++|+++.||..+.++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 34578999999999999999998765 667 999999 8888887753 789999999876422
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..|+|++-.- ..+-...+..+.+.|+|||.+++
T Consensus 156 ~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 156 TFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 2488886633 33456778888999999999775
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=75.44 Aligned_cols=89 Identities=12% Similarity=0.011 Sum_probs=62.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~~ 133 (244)
+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ .+++|+.+|+.+..+ ..|+|++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 35899999999999999999853 46 999999 9999888753 579999999865321 2599987743
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
-.... +.+.+....++|++.+++
T Consensus 250 r~G~~-----~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 250 RRGIG-----KELCDYLSQMAPRFILYS 272 (315)
T ss_pred CCCcc-----HHHHHHHHHcCCCeEEEE
Confidence 21111 122233344677665554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.8e-05 Score=62.71 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=93.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHH-------HhCCC-----------------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVV-------AKAPS----------------------------- 107 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i-------~~a~~----------------------------- 107 (244)
...+||--|||.|.++-++++++- . +.+.+. -.|+ ....+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--A-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--e-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 457999999999999999998843 3 556665 3232 11111
Q ss_pred ----------CCCeeEEeCCCCCCC-Cc-----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCC
Q 041308 108 ----------IPEVTHIGGDMFKSI-HV-----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN 171 (244)
Q Consensus 108 ----------~~~i~~~~gd~~~~~-p~-----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~ 171 (244)
..+++...|||.+-. +. .|+|+.++++.. ..+...-++.|.++|||||..|-.-+....-..
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 035788899998752 22 299999988754 445778899999999999988876655443211
Q ss_pred chHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 172 ESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 172 ~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
.. . ......+.+.+|+.+++++.||++++.+.
T Consensus 211 ------------~~-~--~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 ------------MS-I--PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ------------CC-C--CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00 0 01234678899999999999999988655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.6e-07 Score=75.48 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=74.0
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---C---CCeeEEeCCCCCC---CCcc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---I---PEVTHIGGDMFKS---IHVV 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---~---~~i~~~~gd~~~~---~p~~ 125 (244)
+...-+.+++ ++|||||.|+|.-+.++-..+|+++.++++.. |.+-+.... + .....-..|+..+ +|.+
T Consensus 105 L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 105 LQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 3333333454 67999999999999999999999875777776 433222221 1 2222223344333 5666
Q ss_pred eEEEeccccccCCHHHHHH----HHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKL----IMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~----~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|.+.+..++|.+-++...+ .++++...+.|||.|+|+|..-+
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 8888777777655444344 89999999999999999997544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-07 Score=74.69 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=73.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D~ 127 (244)
+++.+||=||+|.|..++++++..+..+ ++++|+ |.+++.+++. +|++++.+|..+- .+. .|+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 4579999999999999999986544445 999999 9999998862 6999999998643 333 599
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEec
Q 041308 128 IFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 128 v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~d 163 (244)
|++-..--.-+... ...+++.+.++|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 98643321111111 2478999999999999999854
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-06 Score=67.94 Aligned_cols=143 Identities=20% Similarity=0.136 Sum_probs=93.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCee--EEeCCCCC-CCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVT--HIGGDMFK-SIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~--~~~gd~~~-~~p~--~D~v~~~~~lh 135 (244)
+....++|||||-|...+++.... +.+.+.+|. ..|++.++.. +.+. ...+|-.. ++.+ .|+|+.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 345789999999999999999876 444899999 8999999875 4443 33455322 2333 39999999998
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCcee------cCHHHHHHHHHhC
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH------KTEQEFKQLGFST 209 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~t~~e~~~ll~~a 209 (244)
..++ ...-+.+|..+|||+|.++-.=. ..+ ..++ ..-...+..+- ..||.. -...++-.+|..|
T Consensus 149 W~Nd--LPg~m~~ck~~lKPDg~Fiasml--ggd---TLyE-LR~slqLAelE--R~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 149 WTND--LPGSMIQCKLALKPDGLFIASML--GGD---TLYE-LRCSLQLAELE--REGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hhcc--CchHHHHHHHhcCCCccchhHHh--ccc---cHHH-HHHHhhHHHHH--hccCCCCCcChhhhhhhhhhHHhhc
Confidence 6554 35778999999999998874221 111 1111 11122222221 122211 1346889999999
Q ss_pred CCCeEEEEE
Q 041308 210 GFPHLRAFI 218 (244)
Q Consensus 210 Gf~~~~~~~ 218 (244)
||....+..
T Consensus 219 GF~m~tvDt 227 (325)
T KOG2940|consen 219 GFSMLTVDT 227 (325)
T ss_pred Ccccceecc
Confidence 999776643
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=68.18 Aligned_cols=138 Identities=16% Similarity=0.175 Sum_probs=92.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------CCeeEEeCCCCCCCCc----
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------PEVTHIGGDMFKSIHV---- 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------~~i~~~~gd~~~~~p~---- 124 (244)
.++..++|-+|+|.|.-++++.+ +|...+++.+|+ |.|++.++.+ +|++++..|.++-+..
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 35678999999999999999984 587666999999 9999999842 8999999998875322
Q ss_pred ceEEEeccc------cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 125 VDAIFMKWV------LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 125 ~D~v~~~~~------lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
.|.|+.-.. +..+. ...+.+-+.+.|+++|.+++.-....-.+ +..+
T Consensus 366 fD~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQags~y~tp------------~vfw------------ 418 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAGSPYFTP------------RVFW------------ 418 (508)
T ss_pred ccEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecCCCccCC------------ceee------------
Confidence 377774321 11111 23567778899999999998543111110 0000
Q ss_pred HHHHHHHHHhCCCCeEEEE---EccceeEEEeecC
Q 041308 199 EQEFKQLGFSTGFPHLRAF---ISIIFTLFLSSKS 230 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~---~~~~~~~~~~~~~ 230 (244)
-+...+++|||...-.. +.++..+++++.+
T Consensus 419 --~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 419 --RIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred --eehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 12456788998765542 2356667777665
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=76.18 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=69.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-CC-----CCCeeEEeCCCC---CCCCcc--eEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA-PS-----IPEVTHIGGDMF---KSIHVV--DAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-~~-----~~~i~~~~gd~~---~~~p~~--D~v~~~~ 132 (244)
...-+||||||.|.++..+++.+|+.. ++++|. ...+..+ ++ ..++.++.+|+. ..+|.+ |.|++.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 357899999999999999999999999 999998 5444333 22 267888888763 225553 6666553
Q ss_pred cc------ccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VL------TTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~l------h~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
-= ||=..--...+++.+++.|+|||.+.+..
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 32 22111112468999999999999999864
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=63.82 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=80.3
Q ss_pred HHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-C
Q 041308 45 MSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-I 122 (244)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~ 122 (244)
..+.+..-..+|.+.+..++++.+|+|+|+.+|.+++.+++... +.+ ++++|+.+| ...+++.++++|++.+ .
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~----~~~~~V~~iq~d~~~~~~ 99 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPM----KPIPGVIFLQGDITDEDT 99 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccc----ccCCCceEEeeeccCccH
Confidence 33333333556777777678899999999999999999998764 466 999998545 3346699999999875 2
Q ss_pred --------Cc--ceEEEec---ccc-----ccCC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 --------HV--VDAIFMK---WVL-----TTWT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 --------p~--~D~v~~~---~~l-----h~~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+. .|+|++- ++- +|.. -.-+..++.-+.+.|+|||.+++-..
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 22 2888733 222 2211 22244566777889999999998765
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-06 Score=67.33 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=62.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C--C-c-ceEEEe
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I--H-V-VDAIFM 130 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~--p-~-~D~v~~ 130 (244)
..++||++||+|.++.+++.+... + ++++|. +..++.++++ ++++++.+|.++. + . . .|+|++
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 579999999999999999998753 6 999999 8787777653 4789999998653 2 1 1 377776
Q ss_pred ccccccCCHHHHHHHHHHHH--HHcCCCCEEEE
Q 041308 131 KWVLTTWTDDECKLIMENYY--KALLAGRKLIA 161 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii 161 (244)
---...-..+ .+++.+. ..|+++|.+++
T Consensus 128 DPPy~~~~~~---~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 128 DPPFFNGALQ---ALLELCENNWILEDTVLIVV 157 (189)
T ss_pred CcCCCCCcHH---HHHHHHHHCCCCCCCeEEEE
Confidence 6554322222 3344333 35777776554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-06 Score=77.63 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=66.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec------hHHHHhCCCCCCeeEEeCCC---CCCCCc--ceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL------PEVVAKAPSIPEVTHIGGDM---FKSIHV--VDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~------~~~i~~a~~~~~i~~~~gd~---~~~~p~--~D~v~~~~ 132 (244)
.....+||+|||+|.++..+.++. ++.+.. +..++.|-++. +-...+-+ .=++|. .|+|.+..
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccc
Confidence 345788999999999999999865 333332 33444444321 22121222 223555 39999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++..|.+.+ -.+|-++-|+|||||++++..+-..
T Consensus 190 c~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 190 CLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 998888776 3689999999999999998766443
|
; GO: 0008168 methyltransferase activity |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=75.04 Aligned_cols=89 Identities=10% Similarity=-0.016 Sum_probs=63.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~~ 133 (244)
+..+|||+|||+|.++..++... .+ ++++|. +.+++.++++ +++++..+|+.+..+ ..|+|++.--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--Ce-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 34799999999999999999643 46 999999 9999888753 578999999865322 2599887744
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
--.+.. ++++.+. .++|++.+++
T Consensus 310 r~G~~~----~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 310 RRGIGK----ELCDYLS-QMAPKFILYS 332 (374)
T ss_pred CCCCcH----HHHHHHH-hcCCCeEEEE
Confidence 322222 3444443 4789877776
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-05 Score=61.18 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=92.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-h----HHHHhCCCCCCeeEEeCCCCCCC------CcceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-P----EVVAKAPSIPEVTHIGGDMFKSI------HVVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~----~~i~~a~~~~~i~~~~gd~~~~~------p~~D~v~~ 130 (244)
++++.+||-+|.++|+...++..... +.. +.+++. | +.+..|++++||--+-.|...|. +..|+|++
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 78899999999999999999999764 666 888886 5 66778888899998899998761 12387775
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc--CCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV--LPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
- +-+ ++|+.-++.|+..-||+||.++++=-. .+... ++. -.-.+-.+.|++
T Consensus 150 D-VaQ---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~--~p~---------------------~vf~~e~~~L~~ 202 (229)
T PF01269_consen 150 D-VAQ---PDQARIAALNARHFLKPGGHLIISIKARSIDSTA--DPE---------------------EVFAEEVKKLKE 202 (229)
T ss_dssp E--SS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS--SHH---------------------HHHHHHHHHHHC
T ss_pred c-CCC---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcC--CHH---------------------HHHHHHHHHHHH
Confidence 4 332 366778899999999999999985211 11110 000 001222455688
Q ss_pred CCCCeEEEEEcc---ceeEEEeec
Q 041308 209 TGFPHLRAFISI---IFTLFLSSK 229 (244)
Q Consensus 209 aGf~~~~~~~~~---~~~~~~~~~ 229 (244)
.||++.+...+. -++.+++++
T Consensus 203 ~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 203 EGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp TTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCCChheEeccCCCCCCcEEEEEE
Confidence 899998887763 356666654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00023 Score=56.02 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=98.2
Q ss_pred CCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-h----HHHHhCCCCCCeeEEeCCCCCCCC-----c-ceEEEe
Q 041308 62 GFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-P----EVVAKAPSIPEVTHIGGDMFKSIH-----V-VDAIFM 130 (244)
Q Consensus 62 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~----~~i~~a~~~~~i~~~~gd~~~~~p-----~-~D~v~~ 130 (244)
+++++.+||-+|..+|+...++....++.. +.+++. | +.+..+++++|+--+-+|+..|.. + .|+|+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 388999999999999999999999988777 777775 3 567788888999888899987721 2 387764
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
- +- .++|+.-+..|+..-||+||+++++=-...-+...++.+ --.++. +-|++.|
T Consensus 152 D-VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~--------------------vf~~ev-~kL~~~~ 206 (231)
T COG1889 152 D-VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE--------------------VFKDEV-EKLEEGG 206 (231)
T ss_pred e-cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH--------------------HHHHHH-HHHHhcC
Confidence 3 22 246677788999999999997776432211111101100 002233 4458899
Q ss_pred CCeEEEEEcc---ceeEEEeecC
Q 041308 211 FPHLRAFISI---IFTLFLSSKS 230 (244)
Q Consensus 211 f~~~~~~~~~---~~~~~~~~~~ 230 (244)
|++.+..++. -++.+++++.
T Consensus 207 f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred ceeeEEeccCCcccceEEEEEee
Confidence 9999987764 3566666653
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.2e-06 Score=67.50 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=64.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~ 122 (244)
+++.+++.-+ .++...||+||.|||.++..+++... + +++++. |.|++...++ .+.++..||+++. +
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--k-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--K-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--e-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 4566777777 89999999999999999999998764 4 888888 8888776653 5789999999986 8
Q ss_pred CcceEEEeccc
Q 041308 123 HVVDAIFMKWV 133 (244)
Q Consensus 123 p~~D~v~~~~~ 133 (244)
|..|.++.+.-
T Consensus 122 P~fd~cVsNlP 132 (315)
T KOG0820|consen 122 PRFDGCVSNLP 132 (315)
T ss_pred cccceeeccCC
Confidence 88888886433
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=60.74 Aligned_cols=146 Identities=16% Similarity=0.007 Sum_probs=89.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHH-----------HhCCC--CCCeeEEeCCCCCC
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVV-----------AKAPS--IPEVTHIGGDMFKS 121 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i-----------~~a~~--~~~i~~~~gd~~~~ 121 (244)
++.... +++..+|+|+=.|.|.+++.+.... |... ++.+-..+.. ..+++ ..+++.+..+....
T Consensus 40 ~L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~-Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~ 117 (238)
T COG4798 40 VLAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGK-VYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL 117 (238)
T ss_pred eeEEec-cCCCCEEEEEecCCccHhhhhchhcCCcee-EEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc
Confidence 444444 8899999999999999999988753 4444 5444322221 11111 14555554444333
Q ss_pred -CCcc-eEEEecccccc-----CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 122 -IHVV-DAIFMKWVLTT-----WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 122 -~p~~-D~v~~~~~lh~-----~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
.|+. |++.....-|. +....+.++.+.++++|||||.+++.|..-....... + ...-
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------d-------t~~~ 181 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------D-------TITL 181 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------h-------hhhh
Confidence 2332 66665333222 2355677899999999999999999998765542211 1 0112
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
...+..-..+-.+++||+..--..+
T Consensus 182 ~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred cccChHHHHHHHHhhcceeeeeehh
Confidence 2345777888889999997765443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-06 Score=66.08 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=62.5
Q ss_pred HHhccCCCCC--CcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC---------C
Q 041308 55 SVLDGYDGFK--GVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS---------I 122 (244)
Q Consensus 55 ~l~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~---------~ 122 (244)
++.+.++.++ +..++||+||++|.++..++++. +..+ ++++|+..+ .....+.+..+|+.+. +
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEecccc----ccccceeeeecccchhhHHHhhhhhc
Confidence 4555555233 45899999999999999999987 5667 999999434 1224455555555432 1
Q ss_pred C----cceEEEecccccc---------CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 H----VVDAIFMKWVLTT---------WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 p----~~D~v~~~~~lh~---------~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..|+|++-..... ....-+...+.-+.+.|+|||.+++.-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 2 2388886552111 1112233445556677999999887544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.6e-05 Score=61.64 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=81.7
Q ss_pred EEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEeccccccC
Q 041308 69 LVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMKWVLTTW 137 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~~~lh~~ 137 (244)
|.||||..|.+...|++.+.--+ ++++|+ +.-++.|++. +++++..+|-++.++. .|+|++.-+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG--- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG--- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCC---
Confidence 68999999999999999987667 999999 8878777753 7899999998888654 4777776553
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 217 (244)
-.....+|.+....+++..+|++.-. .....+++||.+.||.+.+-.
T Consensus 77 -G~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 -GELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred -HHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 24567788888777766666665110 125678999999999999865
Q ss_pred Ec
Q 041308 218 IS 219 (244)
Q Consensus 218 ~~ 219 (244)
-+
T Consensus 124 lv 125 (205)
T PF04816_consen 124 LV 125 (205)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.5e-05 Score=63.52 Aligned_cols=91 Identities=10% Similarity=0.157 Sum_probs=65.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-~p~- 124 (244)
.++.+++..+ ..+...|||||+|.|.++..|+++... ++++++ +.+++..++ .++++++.+|+++- ++.
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh
Confidence 3566777776 667899999999999999999998765 666666 666665554 38899999999985 774
Q ss_pred --ceEEEeccccccCCHHHHHHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIME 147 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~ 147 (244)
.+.|+.+.- ++++.+-..++++
T Consensus 94 ~~~~~vVaNlP-Y~Isspii~kll~ 117 (259)
T COG0030 94 AQPYKVVANLP-YNISSPILFKLLE 117 (259)
T ss_pred cCCCEEEEcCC-CcccHHHHHHHHh
Confidence 366665543 4455554444443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=63.03 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=68.0
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC---C---CCCeeEEeCCCCCC-CCc-ceEEEeccccccCC
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP---S---IPEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWT 138 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~---~---~~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~ 138 (244)
+++|||+|.|..++.++-.+|+.+ ++.+|. ..-+...+ . .++++++.+...+. .+. .|+|+++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC---
Confidence 899999999999999999999999 999996 43222222 1 27899999988772 333 59999997752
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 139 DDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+++-+...++|||+++..-
T Consensus 127 ---l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 ---LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEc
Confidence 2477888999999999999864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=67.04 Aligned_cols=79 Identities=24% Similarity=0.253 Sum_probs=63.3
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC---C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS---I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~---~ 122 (244)
+.+++++.+. ..+...+||++||.|..+..+++..| +.+ ++++|. +.+++.+++. .+++++.+|+.+. +
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 4567888876 66778999999999999999999986 678 999999 9999988753 4899999998653 2
Q ss_pred C----cceEEEecc
Q 041308 123 H----VVDAIFMKW 132 (244)
Q Consensus 123 p----~~D~v~~~~ 132 (244)
+ ..|.|++..
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 2 247777553
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=63.08 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-------C------CCCeeEEeCCCCCCCCcc-eEEEec
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-------S------IPEVTHIGGDMFKSIHVV-DAIFMK 131 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-------~------~~~i~~~~gd~~~~~p~~-D~v~~~ 131 (244)
-.+.|||||.|.+...+.-.+|+-- +.++++ -.+-+..+ . ..++.+...+.+..+|.. .---++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTL-ILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccce-eeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 5789999999999999999999988 888886 54443333 2 267888888888777752 111222
Q ss_pred cccccCCHHH-----------HHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDE-----------CKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~-----------~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
-.++.++|+- ...++.++.=+|++||.++.+..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 2333344331 134788899999999999987654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00036 Score=59.66 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCC-c--ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIH-V--VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p-~--~D~v~~~~~lh~~~~ 139 (244)
+.++.++||+||++|.++..++++. .+ ++++|...|-......++|.+..+|.+...| . .|.+++-.+. .+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG--MF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KP 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC--CE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CH
Confidence 3567899999999999999999885 47 9999986676666777999999999988755 3 3988877653 23
Q ss_pred HHHHHHHHHHHHHcCCC-CEEEEecccCCCC
Q 041308 140 DECKLIMENYYKALLAG-RKLIACEPVLPDD 169 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pg-G~lii~d~~~~~~ 169 (244)
..+++-+.+.|..| -+-.|...-++.+
T Consensus 283 ---~rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 283 ---ARVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred ---HHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 35667777888776 3344444444443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00024 Score=59.44 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=97.2
Q ss_pred chHHHhccCCC---CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeech------HHHHhCCC---------------
Q 041308 52 FMTSVLDGYDG---FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLP------EVVAKAPS--------------- 107 (244)
Q Consensus 52 ~~~~l~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~------~~i~~a~~--------------- 107 (244)
+++.+-..++. -+..-+||--|||.|.++..++..++.++ +--+.-- -++...+.
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~q-GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQ-GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccc-ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 44445555441 11246899999999999999998877655 3211100 00100010
Q ss_pred ------------------------CCCeeEEeCCCCCC--CCc----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC
Q 041308 108 ------------------------IPEVTHIGGDMFKS--IHV----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 108 ------------------------~~~i~~~~gd~~~~--~p~----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG 157 (244)
.+..+...|||.+- .+. .|+|+.++++.. ..+...-+..|.+.|+|||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCc
Confidence 02345567898775 233 399999977754 4557788999999999999
Q ss_pred EEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 158 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 158 ~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+-+-+.+..-.+.. +. . .-.+.+.+.+++..+...-||++++.+.+.
T Consensus 291 vWiNlGPLlYHF~d~~---------g~---~--~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTH---------GV---E--NEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred EEEeccceeeeccCCC---------CC---c--ccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 9998766544321100 00 0 123567889999999999999999876543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=53.16 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=66.0
Q ss_pred EEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCCC---C---eeEEeCCCCC---CCCc---ceEEEecccc
Q 041308 69 LVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSIP---E---VTHIGGDMFK---SIHV---VDAIFMKWVL 134 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~~---~---i~~~~gd~~~---~~p~---~D~v~~~~~l 134 (244)
++|+|||+|... .+....+. .. ++++|. +.++..++... . +.+..+|... +++. .|++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999977 44444333 35 788998 77777644321 1 5778888765 2443 4888444444
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
|+.. ....++++.+.|+|+|.+++.+.....
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4444 458899999999999999998776543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.2e-06 Score=66.51 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=83.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCHHHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~~~~ 142 (244)
.+.++||+|+|.|..+..++-.+.+ +.+.++ ..|....++ .+.++....-..... ..|+|.+.++|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 3579999999999999988844433 444466 667666554 333333211001111 23999999999654444
Q ss_pred HHHHHHHHHHcCC-CCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhhccCceecC--HHHHHHHHHhCCCCeEEEEE
Q 041308 143 KLIMENYYKALLA-GRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHKT--EQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 143 ~~~l~~~~~~L~p-gG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~t--~~e~~~ll~~aGf~~~~~~~ 218 (244)
-++|+.++.+|+| .|++++.= ++|-.. ...........-|.. + .-+|+.+. ...+-++|+++||.+...+.
T Consensus 186 ~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~~rPdn~-L---e~~Gr~~ee~v~~~~e~lr~~g~~veawTr 260 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLPLRPDNL-L---ENNGRSFEEEVARFMELLRNCGYRVEAWTR 260 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCcCCchHH-H---HhcCccHHHHHHHHHHHHHhcCchhhhhhc
Confidence 5999999999999 78877642 222110 000000000011111 1 12344432 23567899999999888765
Q ss_pred cc
Q 041308 219 SI 220 (244)
Q Consensus 219 ~~ 220 (244)
.+
T Consensus 261 lP 262 (288)
T KOG3987|consen 261 LP 262 (288)
T ss_pred CC
Confidence 54
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.5e-05 Score=67.95 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=43.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~ 120 (244)
.++||++||+|.++..+++... + ++++|. +.+++.++++ .+++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999998887753 6 999999 9999988864 478899998754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.4e-05 Score=67.66 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=69.4
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC---cceEEEeccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH---VVDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p---~~D~v~~~~~lh 135 (244)
..+|||++||+|..+..++...+..+ ++++|. +..++.++++ .++++..+|..+.+. ..|+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 46899999999999999998876446 999999 9999888764 456788888754332 2599988642
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
..+ ..++..+.+.++|||.+++.
T Consensus 135 Gs~----~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GSP----APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCc----HHHHHHHHHHhcCCCEEEEE
Confidence 221 35678877889999999997
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=64.45 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=74.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc-ceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~-~D~v~~ 130 (244)
..++.+|||+++|+|.=+.++++...+ .. ++..|+ +..++..+++ .++.+...|..+. ++. .|.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~-lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGA-IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 567789999999999999999987653 46 899998 7666655542 5677777776542 343 488883
Q ss_pred ccc------cc-------cCCHHHH-------HHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 131 KWV------LT-------TWTDDEC-------KLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 131 ~~~------lh-------~~~~~~~-------~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
--- +. .|+.++. .++|+++.+.|||||+++-..+.+..
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 211 11 2222221 57899999999999999877776544
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.9e-05 Score=55.88 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCCC-Cc-ce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKSI-HV-VD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~~-p~-~D 126 (244)
-.+..+|+|+|||.|.++..++.. .++.+ ++++|. +..++.+.+. .++++..++..+.. .. .+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 456789999999999999999982 37788 999998 7777766642 34555555553331 22 38
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
+++.-|....+++ .+|+.+.+ |+-..+
T Consensus 102 ~~vgLHaCG~Ls~----~~l~~~~~---~~~~~l 128 (141)
T PF13679_consen 102 ILVGLHACGDLSD----RALRLFIR---PNARFL 128 (141)
T ss_pred EEEEeecccchHH----HHHHHHHH---cCCCEE
Confidence 8887777776666 45555554 554444
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.4e-05 Score=67.35 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=43.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~ 120 (244)
.++||++||+|.++..+++... + ++++|. +.+++.++++ .+++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999998887653 5 999999 9999888764 478899998754
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.5e-05 Score=58.36 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=74.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCcceEEEeccccccCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~ 138 (244)
..+.|+|.|+|.++.-.++. .-+ ++.++. |...+.|.++ .+++++.||..+. +..+|+|+|...=..+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 67799999999998877765 234 899998 8887777765 6899999999886 76679998775544444
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++....+++.+.+-||-.++++=.+.
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccHHH
Confidence 55557889999999999999875443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.1e-05 Score=56.96 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=53.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc---ceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV---VDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~---~D~v~~~~~l 134 (244)
-.+.+++|+|||.|.+..++ ..|+.+.++|+|+ |..++.++++ -++++.+.|+.+..+. .|.++++.-+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 35689999999999998444 4455555999999 9999999876 4678888888877443 3887777665
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.6e-05 Score=66.09 Aligned_cols=142 Identities=19% Similarity=0.170 Sum_probs=94.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
.+...++|+|||.|.....+.. +.... ++++|. +.-+..+... .+..++.+|+.+. +++ .|.+.+.-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-f~~~~-~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-FKKAG-VVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHH-hccCC-ccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4556899999999999988874 34556 788887 6555544432 5566788899876 665 48888888
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc----eecCHHHHHHHHHh
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG----KHKTEQEFKQLGFS 208 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~t~~e~~~ll~~ 208 (244)
+..|.++. .+++++++++++|||+++..+++.......+.. ...++.... ..+ ....-.+.-+++..
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~----~~~~i~~~i---~~gd~~~~~~~~~d~~~~~~~ 257 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS----EHVDILLEI---EGGDALPAETFNTDVFDLLKS 257 (364)
T ss_pred ecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhhccCCCc----ccccccCce---eccccccceeccccHHHHHhh
Confidence 88888876 488999999999999999998876543211110 111111111 111 22234456677778
Q ss_pred CCCCeEEE
Q 041308 209 TGFPHLRA 216 (244)
Q Consensus 209 aGf~~~~~ 216 (244)
.||.....
T Consensus 258 ~~~~~~~~ 265 (364)
T KOG1269|consen 258 FGFEHLKL 265 (364)
T ss_pred ccchhhhh
Confidence 88877763
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=57.68 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=67.7
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCC--------eEEEeec-hHHHHhCCCC-------CCeeEEeCCC
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFIC--------EGINFDL-PEVVAKAPSI-------PEVTHIGGDM 118 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~--------~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~ 118 (244)
.++.... +++...|||--||+|.+.++.+...++.. ++++.|+ +.+++.++++ ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444454 77889999999999999999877655432 2789999 9999888764 5688999999
Q ss_pred CCC-CCc--ceEEEecccccc-CCH-HH----HHHHHHHHHHHcCCCCEEEE
Q 041308 119 FKS-IHV--VDAIFMKWVLTT-WTD-DE----CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 119 ~~~-~p~--~D~v~~~~~lh~-~~~-~~----~~~~l~~~~~~L~pgG~lii 161 (244)
.+. ++. .|+|++.--... ... .+ -..+++++.++|+|...+++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 764 333 399998766543 222 11 23467888888988434443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.9e-05 Score=60.63 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+++..|+|.-||.|.++..+++..+..+ ++++|+ |..++..+++ .++....+|..+-.+. +|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 45679999999999999999998666667 999999 8888777652 6789999998766543 59888765
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
.-+ +..+|..+.+.+++||.+.
T Consensus 178 p~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred hHH------HHHHHHHHHHHhcCCcEEE
Confidence 322 2467888999999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.9e-05 Score=59.29 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=84.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hH---HHHhCCC---CCCeeEEeCCCCCCC--Cc-ceEEEeccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PE---VVAKAPS---IPEVTHIGGDMFKSI--HV-VDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~---~i~~a~~---~~~i~~~~gd~~~~~--p~-~D~v~~~~~lh 135 (244)
..+++|||+|.|..+..++-.+|+.+ ++.+|. .. .++.+.. .++++++.+.+.+.. +. .|+|+++-+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc
Confidence 58999999999999999998999999 999995 33 2333322 278999998885542 24 79999987642
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
...++.-+...+++||.++..-.....+ -..+.+.....-|+.+.+
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k~~~~~~----------------------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYKGLAGKD----------------------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhhHHhhhh----------------------------hHHHHHHHHHhhcCcEEE
Confidence 2366778888899999887532211100 033456666778888888
Q ss_pred EEEcc
Q 041308 216 AFISI 220 (244)
Q Consensus 216 ~~~~~ 220 (244)
+....
T Consensus 193 ~~~~~ 197 (215)
T COG0357 193 VFSLT 197 (215)
T ss_pred EEEee
Confidence 76654
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00023 Score=55.10 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=49.4
Q ss_pred cceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 66 VKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
..-+||||||+|..+..+.+. .|... ....|+ |...+...+. .++..+..|+...+.. -|+++.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 477899999999999988875 46667 788899 8877664431 5577888888776443 38777664
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0018 Score=52.37 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=91.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-h-HHHHhCCCCCCeeEEe-CCCCCCCC----c-ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-P-EVVAKAPSIPEVTHIG-GDMFKSIH----V-VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~-~~i~~a~~~~~i~~~~-gd~~~~~p----~-~D 126 (244)
..++.++....+..+||+|+.||.++.-++++.. -+ ++++|. - ++.-..|..+|+.... .|+..-.| + .|
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~-VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KH-VYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cE-EEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 4556666334568999999999999999998753 35 899998 3 3434445557776654 44433222 2 37
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe-cccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
++++--.+ ++. ..+|-.+...++|++-++.. -+-...... ....-.... -+........++..+
T Consensus 147 ~~v~DvSF--ISL---~~iLp~l~~l~~~~~~~v~LvKPQFEagr~--~v~kkGvv~--------d~~~~~~v~~~i~~~ 211 (245)
T COG1189 147 LIVIDVSF--ISL---KLILPALLLLLKDGGDLVLLVKPQFEAGRE--QVGKKGVVR--------DPKLHAEVLSKIENF 211 (245)
T ss_pred eEEEEeeh--hhH---HHHHHHHHHhcCCCceEEEEecchhhhhhh--hcCcCceec--------CcchHHHHHHHHHHH
Confidence 88776554 333 47889999999999887763 211111100 000000011 112233346788999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
+.+.||++..+...+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999999987654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00074 Score=57.74 Aligned_cols=99 Identities=19% Similarity=0.079 Sum_probs=74.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeC-CCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGG-DMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~g-d~~~~-~p~--~D~v~~~ 131 (244)
.+++..|||-=||||.++++..-. +++ ++|.|+ ..|++-++.+ +...+..+ |+.+. ++. .|+|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--Cce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 567789999999999999988765 456 999999 9999999875 34445555 87664 776 4888754
Q ss_pred cccccCC-------HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWT-------DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~-------~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
--..--+ ++-...+|..+.++|++||++++.-+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3322111 34467889999999999999998654
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00046 Score=54.88 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=85.6
Q ss_pred HHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCC
Q 041308 44 AMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGD 117 (244)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd 117 (244)
.|.++.++++..+++.+ .+++.+||.||=|-|.....++++-|..+ .+++. |.+.+..++. ++|....|-
T Consensus 82 VMm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H--~IiE~hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 82 VMMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEH--WIIEAHPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcce--EEEecCHHHHHHHHhcccccccceEEEecc
Confidence 35566666666666665 37789999999999999999999888877 55676 9999888763 677777765
Q ss_pred CCC---CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 118 MFK---SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 118 ~~~---~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
..+ .+|. .|-|..--.-.+ .++...+.+.+.+.|||+|.+-.......
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred hHhhhccccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 433 3555 376664433222 34567889999999999999987765433
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=60.06 Aligned_cols=96 Identities=17% Similarity=0.271 Sum_probs=67.2
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-~p~- 124 (244)
+++.+++.++ .++...|||+|+|+|.++..|++.. -+ +++++. +.+.+..++ .++++++.+|+++- .+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3455777776 6678999999999999999999987 34 888888 777766654 48999999999875 444
Q ss_pred ---c-eEEEeccccccCCHHHHHHHHHHHHHHcCCC
Q 041308 125 ---V-DAIFMKWVLTTWTDDECKLIMENYYKALLAG 156 (244)
Q Consensus 125 ---~-D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg 156 (244)
. ..|+.+.- ++++ ..++.++...-+.|
T Consensus 94 ~~~~~~~vv~NlP-y~is----~~il~~ll~~~~~g 124 (262)
T PF00398_consen 94 LKNQPLLVVGNLP-YNIS----SPILRKLLELYRFG 124 (262)
T ss_dssp CSSSEEEEEEEET-GTGH----HHHHHHHHHHGGGC
T ss_pred hcCCceEEEEEec-ccch----HHHHHHHhhccccc
Confidence 2 45554433 2333 35666666644443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00083 Score=55.94 Aligned_cols=158 Identities=13% Similarity=0.026 Sum_probs=99.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC---------CCCeeEEeCCCCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS---------IPEVTHIGGDMFKSI 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~---------~~~i~~~~gd~~~~~ 122 (244)
.++..+..+- -.+...|+.+|||--.-+..+... ++++ +.-+|.|++++..++ ..+..++..|+.+.+
T Consensus 69 ~~D~~i~~~~-~~g~~qvV~LGaGlDTr~~Rl~~~-~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w 145 (260)
T TIGR00027 69 FFDDFLLAAV-AAGIRQVVILGAGLDTRAYRLPWP-DGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDW 145 (260)
T ss_pred HHHHHHHHHH-hcCCcEEEEeCCccccHHHhcCCC-CCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhH
Confidence 3444444432 234568999999988877766422 3567 888888988865543 257889999987332
Q ss_pred C----------c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh-hhhhcccHhh-hhh
Q 041308 123 H----------V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT-RALLEGDIFV-MTI 189 (244)
Q Consensus 123 p----------~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~-~~~~~~d~~~-~~~ 189 (244)
. . .-++++.-++..++.+++.++|+.+.+...||+.+++ |.+.+-.. .... .......... ..
T Consensus 146 ~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~~- 221 (260)
T TIGR00027 146 PAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG--EWRAGMRAPVYHAARGVD- 221 (260)
T ss_pred HHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch--hHHHHHHHHHHHhhhccc-
Confidence 1 1 2578889999999999999999999998889888775 44332111 0000 0000000000 00
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
..+-....+.++..++|++.||+....
T Consensus 222 ~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 222 GSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ccccccCCChhhHHHHHHHCCCeeecC
Confidence 001112246789999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00017 Score=61.64 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=70.3
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-------cCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-------HCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGD 117 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd 117 (244)
+-+++..+ ..+..+|+|-+||+|.++.++.+. .+..+ +.|+|+ +.++..++.+ ....+..+|
T Consensus 36 ~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 36 DLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHhhhh-ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 33444444 566789999999999999998874 36667 999999 7777665521 334688899
Q ss_pred CCCC--CC---cceEEEeccccccC--CH-----------------HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 118 MFKS--IH---VVDAIFMKWVLTTW--TD-----------------DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 118 ~~~~--~p---~~D~v~~~~~lh~~--~~-----------------~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+.. .. ..|+|++.--+-.. .+ ..-..++.++.+.|++||+++++=
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 8765 22 25999976443221 10 011257899999999999976643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00082 Score=63.72 Aligned_cols=110 Identities=12% Similarity=-0.013 Sum_probs=75.0
Q ss_pred hHHHhccCCCC-CCcceEEEEcCCccHHHHHHHHHc------------------------------------------CC
Q 041308 53 MTSVLDGYDGF-KGVKRLVDVGGSAGDCLRIILQKH------------------------------------------CF 89 (244)
Q Consensus 53 ~~~l~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~ 89 (244)
+..++.... | ++...++|..||+|+++++.+... ..
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 444555444 6 557899999999999999877531 12
Q ss_pred CCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC----cceEEEecccccc-CC-HHHHHHHHHHHHHHcC
Q 041308 90 ICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH----VVDAIFMKWVLTT-WT-DDECKLIMENYYKALL 154 (244)
Q Consensus 90 ~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p----~~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~ 154 (244)
.+ ++++|+ +.+++.|+.+ +++++..+|+.+. .+ ..|+|+++--... +. ..+...+.+.+.+.|+
T Consensus 257 ~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 257 SK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred ce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 35 899999 9999998864 5689999999764 22 1499998855422 22 2334455555555544
Q ss_pred ---CCCEEEEecc
Q 041308 155 ---AGRKLIACEP 164 (244)
Q Consensus 155 ---pgG~lii~d~ 164 (244)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8988877643
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.41 E-value=4.7e-05 Score=58.54 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=46.7
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC-----c-ceEEEecc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH-----V-VDAIFMKW 132 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p-----~-~D~v~~~~ 132 (244)
..|+|+.||.|..++.+++.+.. ++++|+ |..++.++.+ ++|.++.+|+++.++ . .|+|+++-
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36899999999999999998654 899999 9888888753 689999999976422 1 37777654
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0016 Score=50.74 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=66.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCCCCCeeEEeC-CCCCC---------CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPSIPEVTHIGG-DMFKS---------IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~~~~i~~~~g-d~~~~---------~p~ 124 (244)
+=+.|.-+++..+|||+||.+|.+++-..++. |+.. +.++|+-... ..+.+.++.+ |+.++ +|.
T Consensus 60 indKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 60 INDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 33455546788999999999999999888775 8888 9999974332 2244555555 55443 233
Q ss_pred --ceEEEeccccccCC----------HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 --VDAIFMKWVLTTWT----------DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 --~D~v~~~~~lh~~~----------~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|++- +.+.-+ -+-|..+|.-....++|+|.+++--+.
T Consensus 135 r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 135 RPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 2766643 332211 223444555556677899999986653
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00049 Score=57.43 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=58.8
Q ss_pred cceEEEEcCCc-cHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC--------CCCeeEEeCCCCCC---CCcceEEEec
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKH-CFICEGINFDL-PEVVAKAPS--------IPEVTHIGGDMFKS---IHVVDAIFMK 131 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~--------~~~i~~~~gd~~~~---~p~~D~v~~~ 131 (244)
+.+|+=||||. -..++.+++.+ ++.. ++++|. |..++.+++ ..+++|+++|..+. +...|+|++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 46999999995 45566666554 5677 899999 888887764 27899999998653 3345999988
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.... .+.++..++|+++.+.++||.++++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7764 23334579999999999999998874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00034 Score=61.25 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=75.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-------cceEEE
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-------VVDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-------~~D~v~ 129 (244)
+.+|||+=|=||.++.+.+..+. .+ +|.+|+ ...++-|+++ .++.++.+|.|+-+. ..|+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~-vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SE-VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-Cc-eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 79999999999999999997653 25 899999 8888888864 678999999988643 249998
Q ss_pred ecccc------ccCC-HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 130 MKWVL------TTWT-DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 130 ~~~~l------h~~~-~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+---- .-+. ...-..++..+.+.|+|||.+++..+.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 64221 0011 223457899999999999999997763
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00089 Score=53.82 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=85.5
Q ss_pred ccCchHHHHHHHHHHccc----c--------cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec
Q 041308 32 GKKPKMNGLMRKAMSRVF----V--------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL 98 (244)
Q Consensus 32 ~~~~~~~~~f~~~~~~~~----~--------~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~ 98 (244)
.++++..+...++-.... . .+.+.+++.+ ++.+.||||.=||..+..++...|+ .+ ++.+|.
T Consensus 32 ~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~----~ak~~lelGvfTGySaL~~Alalp~dGr-v~a~ei 106 (237)
T KOG1663|consen 32 PREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLL----NAKRTLELGVFTGYSALAVALALPEDGR-VVAIEI 106 (237)
T ss_pred cCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHh----CCceEEEEecccCHHHHHHHHhcCCCce-EEEEec
Confidence 455666665555543331 1 1234455544 3789999999999999999999985 56 899997
Q ss_pred -hHHHHhCC-------CCCCeeEEeCCCCCCCCc---------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 99 -PEVVAKAP-------SIPEVTHIGGDMFKSIHV---------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 99 -~~~i~~a~-------~~~~i~~~~gd~~~~~p~---------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+...+.+. -...|+++.|+..+.+++ .|.+++ .|+.+.- ...+.++.+.+|+||.+++
T Consensus 107 d~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv----DadK~nY-~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 107 DADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV----DADKDNY-SNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred ChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE----ccchHHH-HHHHHHHHhhcccccEEEE
Confidence 55544443 237899999998776332 276653 4555554 4789999999999999886
Q ss_pred ecccCC
Q 041308 162 CEPVLP 167 (244)
Q Consensus 162 ~d~~~~ 167 (244)
=....+
T Consensus 182 DNvl~~ 187 (237)
T KOG1663|consen 182 DNVLWP 187 (237)
T ss_pred eccccC
Confidence 543433
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00084 Score=61.61 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=47.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC--------CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC--------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF--------ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-------- 121 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-------- 121 (244)
...+|||.|||+|.++..+++..+. .. ++++|+ +..+..++.. ..+++..+|+...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccc
Confidence 3469999999999999999887642 45 789999 8887766542 2455566665432
Q ss_pred CCcceEEEeccc
Q 041308 122 IHVVDAIFMKWV 133 (244)
Q Consensus 122 ~p~~D~v~~~~~ 133 (244)
.+..|+|+.+--
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 122499997743
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00013 Score=51.96 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=40.2
Q ss_pred EEEcCCccHHHHHHHHHcCCC---CeEEEeec-h---HHHHhCCC---CCCeeEEeCCCCCCC---C--cceEEEecccc
Q 041308 70 VDVGGSAGDCLRIILQKHCFI---CEGINFDL-P---EVVAKAPS---IPEVTHIGGDMFKSI---H--VVDAIFMKWVL 134 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~---~~~~~~D~-~---~~i~~a~~---~~~i~~~~gd~~~~~---p--~~D~v~~~~~l 134 (244)
||+|+..|..+..+++..+.. + ++++|. + ...+..++ ..+++++.+|..+.+ + ..|++++-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~-~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGK-LYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCC-EEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 689999999999988776543 5 899998 6 34344333 268999999986543 3 238877653 2
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|. .+.+..-++.+.+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 33 3446678999999999999998865
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0033 Score=49.39 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=70.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCcceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~~D~v~~~~~lh~ 136 (244)
.=.+.+|||+|+|+|..++..++.... . ++..|. |..++..+-+ -.|.++..|..-+-+..|+++...++..
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~-~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAA-E-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhH-H-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecC
Confidence 445689999999999999998877542 3 555666 6666655543 4577777777553334599999999854
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.....+++.-..+....|..+++-|+-.+..
T Consensus 155 --~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 155 --HTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred --chHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 3445677774444455677777767655433
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00049 Score=51.59 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=41.3
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCC
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDM 118 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~ 118 (244)
.++|||||.|.++..+++.+|..+ ++++|. |.+.+.++++ +++++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 489999999999999999999888 999999 8888877653 4566666544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0086 Score=47.96 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=85.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC-c--ceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH-V--VDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p-~--~D~v~~~~~ 133 (244)
...++.||||-.+.+.+.+.+.++..+ ++..|+ +.-++.|.++ +++++..+|-+..+. . .|++++.-+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 345599999999999999999999888 999998 7666666542 889999999988743 3 388876654
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
= -.-...+|.+-.+.|+.=-++++. +. -...++++|+.+.+|.+
T Consensus 95 G----G~lI~~ILee~~~~l~~~~rlILQ-----Pn---------------------------~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 95 G----GTLIREILEEGKEKLKGVERLILQ-----PN---------------------------IHTYELREWLSANSYEI 138 (226)
T ss_pred c----HHHHHHHHHHhhhhhcCcceEEEC-----CC---------------------------CCHHHHHHHHHhCCcee
Confidence 3 244567777777777544455551 11 01557799999999998
Q ss_pred EEEEEc
Q 041308 214 LRAFIS 219 (244)
Q Consensus 214 ~~~~~~ 219 (244)
..-+-+
T Consensus 139 ~~E~il 144 (226)
T COG2384 139 KAETIL 144 (226)
T ss_pred eeeeee
Confidence 875444
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=57.58 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=71.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEeccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKWVLT 135 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~~lh 135 (244)
.+|||.-||+|..++.++++.++.+.+++.|+ +..++.++++ .++++..+|....+. ..|+|.+-- .+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999998665544999999 9888887764 457888888865432 259888765 32
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+ ..++..+.+.+++||.+++.-
T Consensus 125 -s~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 125 -TP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -Cc----HHHHHHHHHhcccCCEEEEEe
Confidence 22 267888999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00024 Score=55.94 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=64.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC------Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI------HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~------p~-~D~v~ 129 (244)
.+.++||+=||||.++.+.+.++.. + ++.+|. +..+...+++ .++.++.+|.+..+ .. .|+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~-v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-S-VVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-E-EEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-e-EEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 3689999999999999999988743 5 899998 7777766653 46889999976542 12 49999
Q ss_pred eccccccCCHHHHHHHHHHHH--HHcCCCCEEEEe
Q 041308 130 MKWVLTTWTDDECKLIMENYY--KALLAGRKLIAC 162 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~ 162 (244)
+---...-.. ..+++..+. ..|+++|.+++=
T Consensus 120 lDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 120 LDPPYAKGLY--YEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp E--STTSCHH--HHHHHHHHHHTTSEEEEEEEEEE
T ss_pred ECCCcccchH--HHHHHHHHHHCCCCCCCEEEEEE
Confidence 8866543221 245666666 788888877653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=54.38 Aligned_cols=150 Identities=9% Similarity=-0.016 Sum_probs=97.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC---------CCeeEEeCCCCC-CCCc---------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI---------PEVTHIGGDMFK-SIHV--------- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~---------~~i~~~~gd~~~-~~p~--------- 124 (244)
.+...|+-+|||--.-+-.+-.. ++.+ +.-+|.|++++.-++. .++++++.|+++ +++.
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 34689999999976655544321 2466 7888889999876653 378999999995 4442
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch--HHhhhhhcccHhhhhhhccCceecCHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGKHKTEQ 200 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~t~~ 200 (244)
.-++++..++-.+++++..++|++|...+.||..++............. +... .......... ....-......
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~e~~~~~~~~~ 246 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAAR-KTMRGEDLDR-GELVYFGDDPA 246 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhh-hhcccccccc-ccceeccCCHH
Confidence 1478899999999999999999999999999988887543111110000 0000 0000000000 00111223578
Q ss_pred HHHHHHHhCCCCeEEEE
Q 041308 201 EFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 201 e~~~ll~~aGf~~~~~~ 217 (244)
++..++.+.||......
T Consensus 247 e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 247 EIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHhcCEEEEecC
Confidence 99999999999988763
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0012 Score=55.03 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=72.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D 126 (244)
..++.++|-||+|.|.+.+...+. +.+.++..+|+ .++++..+++ +++....||-+.. .+. .|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457799999999999999998866 77665888999 8888887763 7899999986653 433 39
Q ss_pred EEEeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|+.-..=---+.. -....+.-+.++|||||++++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 88854221001111 123456778899999999998753
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0014 Score=53.30 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=75.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCC----CCeEEEeec-hHHHHhCC-----CCCC--eeEEeCCCCCC---CCcc--
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCF----ICEGINFDL-PEVVAKAP-----SIPE--VTHIGGDMFKS---IHVV-- 125 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~~D~-~~~i~~a~-----~~~~--i~~~~gd~~~~---~p~~-- 125 (244)
..+...++|+|+|+-.=++.+++.+.+ .+ .+-+|+ +.+++... +++. +.-+++|+... +|..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~r-yvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLR-YVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcce-eeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCe
Confidence 345789999999999888888877654 67 788998 66654332 2354 44466887654 3432
Q ss_pred -eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 126 -DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 126 -D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
=.+++...+.+++++++..+|.+++.+|+||-++++-
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3466778999999999999999999999999998883
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0075 Score=49.81 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHccccc----chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------
Q 041308 41 MRKAMSRVFVP----FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------ 108 (244)
Q Consensus 41 f~~~~~~~~~~----~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------ 108 (244)
|-.++...++- -...++..++ .+++.+|++-|.|+|.++-++++.. |-.+ +.-+|. ....+.|++.
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHHHHHHHHHhCC
Confidence 44455444442 2455778888 8999999999999999999999875 6677 888887 5555555542
Q ss_pred -CCeeEEeCCCCCC-CCc----ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecccC
Q 041308 109 -PEVTHIGGDMFKS-IHV----VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEPVL 166 (244)
Q Consensus 109 -~~i~~~~gd~~~~-~p~----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~~~ 166 (244)
+++++...|.-.. ++. +|+|++-.. .+. ..+-.++++||.+ |+++...+++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlP----aPw---~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLP----APW---EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCC----Chh---hhhhhhHHHhhhcCceEEeccHHH
Confidence 7899999998765 443 598886532 233 3345555577875 4777765544
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0036 Score=49.94 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=54.5
Q ss_pred cceEEEEcCCccHHHHHHHH---Hc-CCCCeEEEeec-h-HHHHhCCCC----CCeeEEeCCCCCC--C-C------cce
Q 041308 66 VKRLVDVGGSAGDCLRIILQ---KH-CFICEGINFDL-P-EVVAKAPSI----PEVTHIGGDMFKS--I-H------VVD 126 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~---~~-p~~~~~~~~D~-~-~~i~~a~~~----~~i~~~~gd~~~~--~-p------~~D 126 (244)
+..|+++|.-.|..+...++ .. ++.+ ++++|+ . ..-..+.+. +||+++.||..++ + + ..+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 59999999888887766554 33 6677 999998 2 222222233 8999999998765 1 1 122
Q ss_pred -EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 127 -AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 127 -~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
++++-..-|... . +.+.|+.....++||+++++-|...
T Consensus 112 ~vlVilDs~H~~~-h-vl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILDSSHTHE-H-VLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEESS----S-S-HHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEECCCccHH-H-HHHHHHHhCccCCCCCEEEEEeccc
Confidence 233333333322 2 4677888999999999999977644
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00075 Score=51.29 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=64.7
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCC--C-C--cceEEE
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKS--I-H--VVDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~--~-p--~~D~v~ 129 (244)
+.+||++|+| ||..+..++...|.-. +-..|- ...++..++. .++.+..-+.... + . ..|.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~-v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSS-VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCce-EEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4789999999 6666677776777766 777786 5555544431 4454444333322 1 1 249999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...+. =++-...+++-|.+.|+|.|+-++..+
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCcccceeEecC
Confidence 998873 245567889999999999998776554
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0039 Score=52.59 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=69.5
Q ss_pred cceEEEEcCCccHHHHHHHHHc--------------------CCCCeEEEeec-h--HHHHhCCC---------------
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH--------------------CFICEGINFDL-P--EVVAKAPS--------------- 107 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~~D~-~--~~i~~a~~--------------- 107 (244)
..+||.||||.|.-..+++..+ +.++ ++.+|+ + .+++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 3799999999988777776654 2256 899997 3 33322211
Q ss_pred --------CCCeeEEeCCCCCC-C---------CcceEEEeccccccC---CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 108 --------IPEVTHIGGDMFKS-I---------HVVDAIFMKWVLTTW---TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 108 --------~~~i~~~~gd~~~~-~---------p~~D~v~~~~~lh~~---~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.-+++|.+.|+++. . |..++|.+-++++.+ +-.+..++|.++-..++||..|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 02478999999865 1 123778777776542 234567899999999999999999986
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.024 Score=49.73 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=71.9
Q ss_pred HHHHHHcccccchHHHhccCC--CCC-CcceEEEEcCCccHHHHHHHHH---------------cCCCCeEEEeech---
Q 041308 41 MRKAMSRVFVPFMTSVLDGYD--GFK-GVKRLVDVGGSAGDCLRIILQK---------------HCFICEGINFDLP--- 99 (244)
Q Consensus 41 f~~~~~~~~~~~~~~l~~~~~--~~~-~~~~vLDvG~G~G~~~~~l~~~---------------~p~~~~~~~~D~~--- 99 (244)
+|+.+.....++.++.++... ... +.-+|+|+|||+|.++..+... .|+++ +..-|+|
T Consensus 36 ~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP~ND 114 (386)
T PLN02668 36 AQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLPSND 114 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCCCCC
Confidence 444444444444444433321 112 3569999999999776544321 24566 7666765
Q ss_pred -----HHHHhCC------------CCCC---eeEEeCCCCCC-CCcc--eEEEeccccccCCH--H--------------
Q 041308 100 -----EVVAKAP------------SIPE---VTHIGGDMFKS-IHVV--DAIFMKWVLTTWTD--D-------------- 140 (244)
Q Consensus 100 -----~~i~~a~------------~~~~---i~~~~gd~~~~-~p~~--D~v~~~~~lh~~~~--~-------------- 140 (244)
..+..-+ ...+ +.-+.|.|... +|.. +++++.+.+|.++. +
T Consensus 115 FNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~ 194 (386)
T PLN02668 115 FNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGR 194 (386)
T ss_pred HHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCc
Confidence 1111100 0011 23345778776 7875 99999999998772 1
Q ss_pred --------H------------HHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 141 --------E------------CKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 141 --------~------------~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
. ...+|+-=++-|.|||++++.=...+
T Consensus 195 iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 195 VFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred eEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCC
Confidence 1 12244444566899999999865554
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.002 Score=54.23 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=69.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC------cceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH------VVDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p------~~D~v~ 129 (244)
...+|||+=|=||.++.+.+..+ ..+ ++.+|. ...++.++++ .+++++.+|+++.+. ..|+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999887643 335 899999 8888888763 689999999987532 249998
Q ss_pred ecccc---ccCC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVL---TTWT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~l---h~~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+---- ..+. ...-.++++.+.+.|+|||.++++.+
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 64211 1111 22346789999999999999987665
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00066 Score=51.19 Aligned_cols=39 Identities=33% Similarity=0.358 Sum_probs=36.4
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|...|++.|++-++-..+++++++.|||||+|-|.=
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 499999999999999999999999999999999998863
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0034 Score=56.00 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=70.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS--- 121 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~--- 121 (244)
+.+.+.+.++ ..+..+++|+=||.|.++..++++.. + ++++++ +..++.|+++ .+++|+.+|..+-
T Consensus 281 l~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~-V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--K-VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--E-EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 3444555555 55678999999999999999995543 3 999999 9999988864 6799999998664
Q ss_pred CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 122 IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 122 ~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.. ..|+|+.---=-...+ .+++.+. .++|-..++|
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~~----~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGADR----EVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred ccccCCCCEEEECCCCCCCCH----HHHHHHH-hcCCCcEEEE
Confidence 21 2388886533333332 3444444 3567777776
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0057 Score=51.91 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=56.5
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFK 120 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~ 120 (244)
+.+++++.+. ..++..++|.=+|.|..+..+++..|+.+ ++++|. +.+++.+++. .|+.++.+++.+
T Consensus 8 ll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567788776 66778999999999999999999987788 999999 9999888753 589999888854
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0061 Score=52.44 Aligned_cols=98 Identities=22% Similarity=0.137 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---cceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---VVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---~~D~v~~~~ 132 (244)
.++.+|||.=+|.|.+++.+++.. ..+ ++++|+ |..++..+++ .++..+.||..+-.+ .+|-|++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-Cce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 457999999999999999999764 456 899999 9888877753 568999999977543 379999886
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.- .+.+++-.+.+.+++||.+...+.+..+.
T Consensus 265 p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 265 PK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 53 12467778888899999999988865544
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.032 Score=48.62 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=75.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p 123 (244)
....++ ..++.+|||.+++.|.=+.++++.-.+ .. ++.+|. +.-+...+.+ .++.++..|.... .+
T Consensus 148 ~a~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 148 PALVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 334455 677799999999999999999988765 34 589998 6555555442 4566667665321 22
Q ss_pred c---ceEEEec------ccc-------ccCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 V---VDAIFMK------WVL-------TTWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 ~---~D~v~~~------~~l-------h~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
. +|.|++- .++ ..++..+ ...+|+.+.+.|||||.|+-..+.+...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2 4666632 122 2333321 2468999999999999999988876654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0038 Score=55.77 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=64.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hH----HHHhCCCCCCeeEEeCCCCCC---CCc-ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PE----VVAKAPSIPEVTHIGGDMFKS---IHV-VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~----~i~~a~~~~~i~~~~gd~~~~---~p~-~D~v~~~~~ 133 (244)
......|+|..+|.|.+|.+|.+. | +.++.. |. .+...-++.-|.. -.|.-+. .|. .|++...++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~----VWVMNVVP~~~~ntL~vIydRGLIG~-yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P----VWVMNVVPVSGPNTLPVIYDRGLIGV-YHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C----ceEEEecccCCCCcchhhhhcccchh-ccchhhccCCCCcchhheehhhh
Confidence 566789999999999999999753 2 444554 32 2222222222332 2355444 454 399998888
Q ss_pred cccCCHH-HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDD-ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-.+.+. +...+|-++-|.|+|||.++|-|.
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 8665422 356789999999999999999664
|
; GO: 0008168 methyltransferase activity |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0021 Score=57.36 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=46.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS 121 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~ 121 (244)
++....+||+.||||.+...+++... + ++++++ |..++.|+.+ .+++|++|...+.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~--~-ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK--R-VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc--c-eeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 66778999999999999999997654 4 899998 9888888864 7899999955443
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.023 Score=44.64 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=66.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC------cceEEEe
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH------VVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p------~~D~v~~ 130 (244)
.+.++||+=+|+|.++.+.+.++.. + ++.+|. .......+++ .++.+...|...-++ ..|+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~-~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-R-VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-e-EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 3689999999999999999988643 5 888897 6665555542 678888888763221 2599998
Q ss_pred cccccc-CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 131 KWVLTT-WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 131 ~~~lh~-~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
---.+. +.+.+...+.-.-...|+|+|.+++=
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 877762 22222222232345679999988863
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0012 Score=57.46 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeE
Q 041308 41 MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTH 113 (244)
Q Consensus 41 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~ 113 (244)
|-+.-......+.+.+++.++ .++. ++||+-||.|.++..+++... + +++++. +.+++.|+++ .+++|
T Consensus 174 FfQvN~~~~~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~-V~gvE~~~~av~~A~~Na~~N~i~n~~f 248 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--K-VIGVEIVEEAVEDARENAKLNGIDNVEF 248 (352)
T ss_dssp ---SBHHHHHHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--E-EEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred CccCcHHHHHHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--e-EEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence 444333333344555666666 4444 899999999999999996653 3 999999 9999988853 78999
Q ss_pred EeCCC
Q 041308 114 IGGDM 118 (244)
Q Consensus 114 ~~gd~ 118 (244)
+.++.
T Consensus 249 ~~~~~ 253 (352)
T PF05958_consen 249 IRGDA 253 (352)
T ss_dssp EE--S
T ss_pred EEeec
Confidence 88765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.044 Score=44.72 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=72.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc-----
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV----- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~----- 124 (244)
+.+..+ -.+.+||-+| -.-..+++++-.++.-+ ++++|+ +.+++..++. -+|+....|+.+++|+
T Consensus 37 ~~~~gd--L~gk~il~lG-DDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 37 MAERGD--LEGKRILFLG-DDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHTT---STT-EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-
T ss_pred HHhcCc--ccCCEEEEEc-CCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcC
Confidence 444444 3458999999 44455566665555567 999999 8888776642 3499999999999885
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC-EEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR-KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG-~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
+|++++--. ++.+-..-++.+..++||.-| ..++ -....+. ++ + ...++.
T Consensus 113 fD~f~TDPP---yT~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~--s~---------~--------------~~~~~Q 163 (243)
T PF01861_consen 113 FDVFFTDPP---YTPEGLKLFLSRGIEALKGEGCAGYF-GFTHKEA--SP---------D--------------KWLEVQ 163 (243)
T ss_dssp BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEE-EE-TTT----H---------H--------------HHHHHH
T ss_pred CCEEEeCCC---CCHHHHHHHHHHHHHHhCCCCceEEE-EEecCcC--cH---------H--------------HHHHHH
Confidence 399987754 344667788999999999755 4333 2211110 00 0 012456
Q ss_pred HHHHhCCCCeEEEEEccce
Q 041308 204 QLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~~~ 222 (244)
+.+.+.||-+.++.+-++.
T Consensus 164 ~~l~~~gl~i~dii~~Fn~ 182 (243)
T PF01861_consen 164 RFLLEMGLVITDIIPDFNR 182 (243)
T ss_dssp HHHHTS--EEEEEEEEEEE
T ss_pred HHHHHCCcCHHHHHhhhcc
Confidence 7777888888887665543
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.033 Score=48.52 Aligned_cols=110 Identities=10% Similarity=-0.015 Sum_probs=73.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC----CC----------------------------------eEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF----IC----------------------------------EGI 94 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~----------------------------------~~~ 94 (244)
+..++..-. |.+...++|-=||+|+++++.+...++ .. ..+
T Consensus 180 AaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 344555554 888899999999999999998877642 11 156
Q ss_pred Eeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC--cceEEEecccccc-CCHHHHHH-HHH----HHHHHcCCCC
Q 041308 95 NFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH--VVDAIFMKWVLTT-WTDDECKL-IME----NYYKALLAGR 157 (244)
Q Consensus 95 ~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p--~~D~v~~~~~lh~-~~~~~~~~-~l~----~~~~~L~pgG 157 (244)
++|+ +.+++.|+.+ +.|+|.++|+..- -| +.|+|+++---.- +.++.... +-+ .+.+.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 9999 9999999875 6799999998654 22 3499998754321 33332222 333 4445555556
Q ss_pred EEEEec
Q 041308 158 KLIACE 163 (244)
Q Consensus 158 ~lii~d 163 (244)
++++..
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 777643
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0021 Score=52.58 Aligned_cols=98 Identities=11% Similarity=0.043 Sum_probs=67.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
+.+.+|+|||||.=-++.......|+.+ +++.|+ ..+++..++. .+.++...|.....|. .|+.++.-++|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 4579999999999988888787777888 999999 8888777653 6778888899888554 59999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+...+. ..--++.+.++. -.++|.-+
T Consensus 183 ~le~q~~-g~g~~ll~~~~~-~~~vVSfP 209 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS-PHVVVSFP 209 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE-SEEEEEEE
T ss_pred HHHHHhc-chHHHHHHHhCC-CeEEEecc
Confidence 8776653 333445555533 45555444
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.032 Score=47.03 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=97.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc--CCCCeEEEeechHHHHhCCC---C-------------------------CCee
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH--CFICEGINFDLPEVVAKAPS---I-------------------------PEVT 112 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~~~~i~~a~~---~-------------------------~~i~ 112 (244)
..+...|+-+|||.-...-.+...+ +.++ ++-+|-|++++.--. . ++..
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~ 163 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYH 163 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCcee
Confidence 4567899999999999999999887 6667 888887666542211 0 2334
Q ss_pred EEeCCCCCC------CCc-------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh
Q 041308 113 HIGGDMFKS------IHV-------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL 179 (244)
Q Consensus 113 ~~~gd~~~~------~p~-------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~ 179 (244)
....|..+. +.. +-+++..-+|-.+++++...+++.+.+.. |.+.+++.|.+.+.++-+.
T Consensus 164 ~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~------ 236 (335)
T KOG2918|consen 164 LIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGK------ 236 (335)
T ss_pred eeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHH------
Confidence 444444311 111 13566777888899999999999998877 6688888999886653211
Q ss_pred hcccHhhhh--hhccC-ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 180 LEGDIFVMT--IYRAK-GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 180 ~~~d~~~~~--~~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.|-.+... ....| -...|.+..++-+.++||+.+.+.++.
T Consensus 237 -vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ 279 (335)
T KOG2918|consen 237 -VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMN 279 (335)
T ss_pred -HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHH
Confidence 11111110 00111 233478899999999999999987763
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.13 Score=44.55 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=76.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH--------c--------CCCCeEEEeechH------------HHHhCCCCCC--ee
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK--------H--------CFICEGINFDLPE------------VVAKAPSIPE--VT 112 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~~D~~~------------~i~~a~~~~~--i~ 112 (244)
.++.-+|+|+||.+|.++..+.+. + |.+. +..-|+|. ..+......+ +.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 456679999999999998876643 1 2345 77778751 1000001123 34
Q ss_pred EEeCCCCCC-CCcc--eEEEeccccccCCH-------------------------HH------------HHHHHHHHHHH
Q 041308 113 HIGGDMFKS-IHVV--DAIFMKWVLTTWTD-------------------------DE------------CKLIMENYYKA 152 (244)
Q Consensus 113 ~~~gd~~~~-~p~~--D~v~~~~~lh~~~~-------------------------~~------------~~~~l~~~~~~ 152 (244)
-+.|.|... +|.. |++++.+.||.++. +. ...+|+.=++=
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 467999887 7875 99999999987762 11 11234444456
Q ss_pred cCCCCEEEEecccCCCCCC------chHHhhhhhcccHhhhhh--------hccCceecCHHHHHHHHHhCCC
Q 041308 153 LLAGRKLIACEPVLPDDSN------ESQRTRALLEGDIFVMTI--------YRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 153 L~pgG~lii~d~~~~~~~~------~~~~~~~~~~~d~~~~~~--------~~~~~~~~t~~e~~~ll~~aGf 211 (244)
|+|||++++.=...++... .-+......+.++..... +..--..++.+|+++.+++.|=
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence 8999999998666555211 011111122223221110 0001234589999999988773
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0089 Score=50.77 Aligned_cols=66 Identities=24% Similarity=0.219 Sum_probs=50.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMF 119 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~ 119 (244)
+.+++++.+. .++...++|.=-|.|..+.++++..|+.+ ++++|. |.+++.+++. +|+.++.++|-
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 4567777776 67778999999999999999999999988 999999 9999777653 68888888773
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.015 Score=50.48 Aligned_cols=110 Identities=16% Similarity=0.300 Sum_probs=75.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEe---echHHHHhCC-C------------CCCeeEEeCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINF---DLPEVVAKAP-S------------IPEVTHIGGD 117 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~---D~~~~i~~a~-~------------~~~i~~~~gd 117 (244)
..+++.+. ..+.....|+|+|.|..+..++....--. -+|+ |-|.-....+ . ...+..+.|+
T Consensus 182 ~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gs 259 (419)
T KOG3924|consen 182 RSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGS 259 (419)
T ss_pred HHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccc
Confidence 34666666 77889999999999999988876542222 3344 4322211111 1 1457888898
Q ss_pred CCCC------CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 118 MFKS------IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 118 ~~~~------~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+..+ .+++++|+++++. ++++...+ ++++..-+++|-+++-.+...+.
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred cCCHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEecccccccc
Confidence 8765 2346999999887 66766555 44899999999999998887773
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.013 Score=47.18 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=68.8
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-----CC---eEEEeechHHHHhCCCCCCeeEEeCCCCCC--C-----
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-----IC---EGINFDLPEVVAKAPSIPEVTHIGGDMFKS--I----- 122 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~---~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~--~----- 122 (244)
+.++.+.+..+++|++...|.+++-+.++.-. .+ +++.+|+..|. ..+.|.-+++|+.+. .
T Consensus 34 eef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 34 EEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----ccCceEEeecccCCHhHHHHHHH
Confidence 34444667899999999999999999887411 11 27889985552 346777788999765 1
Q ss_pred --C--cceEEEecc-----ccccCCHH----HHHHHHHHHHHHcCCCCEEEE
Q 041308 123 --H--VVDAIFMKW-----VLTTWTDD----ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 123 --p--~~D~v~~~~-----~lh~~~~~----~~~~~l~~~~~~L~pgG~lii 161 (244)
. .+|+|++-. -+|.++.- -....|.-...+|||||.|+-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 1 159998753 45665532 233456667789999999974
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.064 Score=46.19 Aligned_cols=92 Identities=20% Similarity=0.109 Sum_probs=66.4
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC---CCCCCCc-ceEEEecccccc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD---MFKSIHV-VDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd---~~~~~p~-~D~v~~~~~lh~ 136 (244)
.++.++|+=+|.| .|..+..+++..- .+ ++++|. ++-.+.|++...-.++... ..+.... +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence 5678899888865 7778889998654 78 999999 8888888887555555543 2222222 587775433 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..+....+.|++||+++++-..
T Consensus 240 -------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 -------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhHHHHHHHHhcCCEEEEECCC
Confidence 3467888899999999998765
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.051 Score=48.52 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=71.4
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-----CCCCeeEEeCCCCCC-CCc--ceEEEeccccccCC
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-----SIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-----~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~ 138 (244)
++|-+|||.-.+...+.+.+-+ . ++.+|. +-+++... ..+-+.+...|+... ++. .|+|+....++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~-d-I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE-D-ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC-C-ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 9999999999888888876432 3 667787 54444332 336789999999776 665 49999999998855
Q ss_pred HHH--------HHHHHHHHHHHcCCCCEEEEeccc
Q 041308 139 DDE--------CKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 139 ~~~--------~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.++ +...+.++.|+|+|||+++.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 332 223578999999999999988774
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0064 Score=48.69 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=46.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS 121 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~ 121 (244)
....|+|.-||.|..++.++.++|. ++.+|+ |--|..|+.+ +||+|++||+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 4678999999999999999999886 888898 8888888764 7999999999875
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0046 Score=43.99 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=42.9
Q ss_pred eEEEecccc---c-cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 126 DAIFMKWVL---T-TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 126 D~v~~~~~l---h-~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
|+|++-.+. | ++-|+-...+|+++++.|+|||.+++ |+ .+. ..+......... ... ........+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-Ep----Q~w-~sY~~~~~~~~~-~~~--n~~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EP----QPW-KSYKKAKRLSEE-IRE--NYKSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E-------H-HHHHTTTTS-HH-HHH--HHHH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eC----CCc-HHHHHHhhhhHH-HHh--HHhceEEChHH
Confidence 777766554 2 23477788999999999999999997 22 100 111111111111 000 12233345667
Q ss_pred HHHHHHh--CCCCeEEEEEcc
Q 041308 202 FKQLGFS--TGFPHLRAFISI 220 (244)
Q Consensus 202 ~~~ll~~--aGf~~~~~~~~~ 220 (244)
+.+.|.+ -||+.++.....
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888887 599988755443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.012 Score=41.67 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL 98 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~ 98 (244)
.+...++|+|||.|.+.--|.+..- + +.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~-G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY--P-GWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC--C-cccccc
Confidence 3567999999999999888887643 4 788885
|
; GO: 0008168 methyltransferase activity |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.079 Score=43.17 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=70.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-----hHHHHhCCCCCCeeEEeCCCCCCCC------cceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-----PEVVAKAPSIPEVTHIGGDMFKSIH------VVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-----~~~i~~a~~~~~i~~~~gd~~~~~p------~~D~v~~ 130 (244)
+++..+||-+|+++|....++.... |+-- +.+++. -..+..|+++.+|--+.-|+..+.. --|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~-VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGC-VYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCce-EEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 6788999999999999999998864 5555 566653 3667778888888777788877622 1276653
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
- +- .++++..+.-|+.--||+||.++|.
T Consensus 233 D-va---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 233 D-VA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred c-CC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 3 32 2456667778899999999999885
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.038 Score=46.48 Aligned_cols=67 Identities=25% Similarity=0.212 Sum_probs=57.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMF 119 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~ 119 (244)
+.+++++.+. .++...++|+-=|.|..+..+++++|.....+++|. |.+++.|++. +|+.++.++|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 4667888887 777899999999999999999999986544999999 9999999863 68999988874
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.087 Score=47.57 Aligned_cols=126 Identities=20% Similarity=0.223 Sum_probs=86.4
Q ss_pred cccccccCchHHHHHHHHHHcccccchHHHhccCC--CCCCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeec-h
Q 041308 27 AYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYD--GFKGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDL-P 99 (244)
Q Consensus 27 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~-~ 99 (244)
-||..++|+-..+.|++|+.. .|.+..+ ..+....|+-+|+|-|-++.+.++.- -.++ .++++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~~-------AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVk-lyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAILK-------ALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVK-LYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHHH-------HHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceE-EEEEecCc
Confidence 377788899888899988743 3444433 12235788999999999988777653 3455 788887 7
Q ss_pred HHHHhCCCC------CCeeEEeCCCCCCC-C-c-ceEEEeccccccCCHHH-HHHHHHHHHHHcCCCCEEEE
Q 041308 100 EVVAKAPSI------PEVTHIGGDMFKSI-H-V-VDAIFMKWVLTTWTDDE-CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 100 ~~i~~a~~~------~~i~~~~gd~~~~~-p-~-~D~v~~~~~lh~~~~~~-~~~~l~~~~~~L~pgG~lii 161 (244)
+.+-..... .+++++..||.+-. | + +|++++. .|.-|.|.+ ....|.-+-+.|||.|..|=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 666544431 78999999997753 3 2 5887755 334444332 44678889999999976653
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.034 Score=43.72 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=61.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC---------CCeeEEeCCCCCC-----CC------c
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI---------PEVTHIGGDMFKS-----IH------V 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~---------~~i~~~~gd~~~~-----~p------~ 124 (244)
+...|+-+|||--.....+....++++ +.-+|.|++++..++. .+++++..|+.++ +. .
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 445999999999999999988777777 8888999888766642 2367899999864 12 1
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENY 149 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~ 149 (244)
.-++++..++..+++++...+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 2578889999999999998888876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.033 Score=41.68 Aligned_cols=105 Identities=16% Similarity=0.069 Sum_probs=64.8
Q ss_pred EEEeec-hHHHHhCCCC-------CCeeEEeCCCCC---CCCc--ceEEEecccc-----ccC--CHHHHHHHHHHHHHH
Q 041308 93 GINFDL-PEVVAKAPSI-------PEVTHIGGDMFK---SIHV--VDAIFMKWVL-----TTW--TDDECKLIMENYYKA 152 (244)
Q Consensus 93 ~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~---~~p~--~D~v~~~~~l-----h~~--~~~~~~~~l~~~~~~ 152 (244)
+.++|+ ++.++..+++ +|++++..+-.+ .++. .|+++++.-. |.+ ..+...+.++.+.+.
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 889999 8888887753 679998865432 2555 3888866433 111 144577899999999
Q ss_pred cCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 153 LLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 153 L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
|+|||.+.++=..-.+.+ . .+. ....+|.+-|.+--|.+.....+
T Consensus 82 L~~gG~i~iv~Y~GH~gG--~-eE~-------------------~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 82 LKPGGIITIVVYPGHPGG--K-EES-------------------EAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp EEEEEEEEEEE--STCHH--H-HHH-------------------HHHHHHHHTS-TTTEEEEEEEES
T ss_pred hccCCEEEEEEeCCCCCC--H-HHH-------------------HHHHHHHHhCCcceEEEEEEEcc
Confidence 999999998765322221 0 000 11345556666677888777665
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.083 Score=42.32 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=61.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC---------------------------------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI--------------------------------- 108 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~--------------------------------- 108 (244)
+++-++-|-+||.|.++.-+.-.++ .++.+++-|+ +.+++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 5668999999999998776665554 4455788899 9899888762
Q ss_pred ---------------CCeeEEeCCCCCCCC-------c-ceEEEecccccc---CC----HHHHHHHHHHHHHHcCCCCE
Q 041308 109 ---------------PEVTHIGGDMFKSIH-------V-VDAIFMKWVLTT---WT----DDECKLIMENYYKALLAGRK 158 (244)
Q Consensus 109 ---------------~~i~~~~gd~~~~~p-------~-~D~v~~~~~lh~---~~----~~~~~~~l~~~~~~L~pgG~ 158 (244)
......+.|.|++-+ . .|+||.-.-..+ |. .+-...+|+.++.+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 125677889988521 2 288886544433 22 33467899999999955555
Q ss_pred EEEec
Q 041308 159 LIACE 163 (244)
Q Consensus 159 lii~d 163 (244)
+++++
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 55543
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.27 Score=40.50 Aligned_cols=98 Identities=15% Similarity=0.027 Sum_probs=58.9
Q ss_pred CC-CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC------------CCeeEEeCCCCCC------CC
Q 041308 63 FK-GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI------------PEVTHIGGDMFKS------IH 123 (244)
Q Consensus 63 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~------------~~i~~~~gd~~~~------~p 123 (244)
++ ...+||++|+|+|...+..+. ....+ ++.-|.+..++..+.+ ..+.+...+..++ .|
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~-~~~~~-v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAAL-LLGAE-VVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHH-Hhcce-eccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 44 456899999999966655554 34556 6666775554433321 2444444333332 33
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+|+.+.++.+-.. ...+++-++..|-.++.+++.-.
T Consensus 161 ~~~DlilasDvvy~~~~--~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEES--FEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred CcccEEEEeeeeecCCc--chhHHHHHHHHHhcCCeEEEEEe
Confidence 4 599999988865333 23566677777777775555443
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.11 Score=49.20 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=54.2
Q ss_pred cceEEEEcCCccHHHHHHHHHc-------C-----CCCeEEEeec-h---HHHHhCC----------------------C
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH-------C-----FICEGINFDL-P---EVVAKAP----------------------S 107 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~~D~-~---~~i~~a~----------------------~ 107 (244)
.-+|+|+|=|+|.+.....+.. | .++ ++.++. | ..+..+- .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~-~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLH-FISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEE-EEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4699999999999877777544 3 456 777775 3 1111110 0
Q ss_pred C-------C--CeeEEeCCCCCCCC---c-ceEEEeccccc-cCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 108 I-------P--EVTHIGGDMFKSIH---V-VDAIFMKWVLT-TWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 108 ~-------~--~i~~~~gd~~~~~p---~-~D~v~~~~~lh-~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
. . ++++..||+.+.++ . .|++++--+-= .-++--...+|+++++.++|||+++-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 0 1 23455577654433 2 47776543221 11111124678888888888888774
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.15 Score=44.79 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=50.8
Q ss_pred CCeeEEeCCCCCC---CCcc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 109 PEVTHIGGDMFKS---IHVV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 109 ~~i~~~~gd~~~~---~p~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++++++.+++.+- .|.+ |.+++...+..+++++..+.++++.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 8999999988664 4443 999999999999999999999999999999999999766444
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.56 Score=41.20 Aligned_cols=99 Identities=16% Similarity=-0.005 Sum_probs=62.8
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC----CCCC----CCc--ceEEEe
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD----MFKS----IHV--VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd----~~~~----~p~--~D~v~~ 130 (244)
..+..+||.+|||+ |..+..+++.....+ ++++|. +...+.+++.....++... +.+. .+. .|+|+-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~-vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAER-VIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 55678999999987 889999998875435 888887 8788777664223332211 1111 111 376664
Q ss_pred cc-------ccccC--------CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KW-------VLTTW--------TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~-------~lh~~--------~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.- .+|++ .+. ...++++.+.|+|+|+++++..
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 31 11111 222 3568889999999999999854
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.6 Score=34.61 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=72.6
Q ss_pred cceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec--hHHHHhCCCCCCeeEEeCCCCCC-CCc---------ceEEE
Q 041308 66 VKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL--PEVVAKAPSIPEVTHIGGDMFKS-IHV---------VDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~-~p~---------~D~v~ 129 (244)
+..|+++|.-.|..++.++.. ....+ |+++|+ ...-..|++.++|.|+.|+-.++ +.. .-+.+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~k-vl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFK-VLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCce-EEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 589999998888877766653 33466 888886 33334455569999999998776 211 14566
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS 170 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~ 170 (244)
+-..-|+ .+.+.+-|+-....|.-|-++++-|...++.+
T Consensus 149 ilDsdHs--~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHS--MEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCch--HHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 6666666 34456778888888888999999888877664
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.22 Score=37.53 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=67.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
.+.++..+. -.+..+.+|+|.|.|....+.++.. -.. .+++++ |..+..++-. .+..|..-|+++. +.
T Consensus 61 v~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 61 VENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 444555554 3455899999999999999888765 234 788899 8888777632 5667777788775 55
Q ss_pred cc-eEEEec--cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 124 VV-DAIFMK--WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 124 ~~-D~v~~~--~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+. .++++. .++. .+-.+++.-|+.+.+++-.-.-+|.
T Consensus 138 dy~~vviFgaes~m~--------dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMP--------DLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ccceEEEeehHHHHh--------hhHHHHHhhCcCCCeEEEEecCCCc
Confidence 54 444322 2221 2233444456778888876665543
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.11 Score=45.93 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=54.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~p~--~D~v~~~~ 132 (244)
+...+||||.|||.++...++... -. +++++. -+|.+.|++. ++|+++.---.+- .|. +|+++-..
T Consensus 66 gkv~vLdigtGTGLLSmMAvraga-D~-vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGA-DS-VTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcC-Ce-EEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 345889999999999999888873 35 899998 8888888862 6676654322221 222 36555443
Q ss_pred ccccCCHHHHHHHHHHHHHHcC
Q 041308 133 VLTTWTDDECKLIMENYYKALL 154 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~ 154 (244)
+...+.-+-+..-++++.+.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 3333322223334555555543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.16 Score=42.90 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=72.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~-~D~v~ 129 (244)
..+..+|||.+++.|.=+.++++... ..+ +++.|. +.-+...+++ .++.....|..+. .+. .|.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~-i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGE-IVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSE-EEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhH-HHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 45678999999999999999998876 456 899998 6665555432 5677776666443 122 47777
Q ss_pred ec------cccccCCH--------------HHHHHHHHHHHHHc----CCCCEEEEecccCCCC
Q 041308 130 MK------WVLTTWTD--------------DECKLIMENYYKAL----LAGRKLIACEPVLPDD 169 (244)
Q Consensus 130 ~~------~~lh~~~~--------------~~~~~~l~~~~~~L----~pgG~lii~d~~~~~~ 169 (244)
+- .++..-++ ..-.++|+++.+.+ ||||+++-..+.+...
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 42 11221111 11246899999999 9999999887755433
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.15 Score=42.47 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCC
Q 041308 79 CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 79 ~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG 157 (244)
++++|.+.++..+ ++++|. +..++.+.+..-+.-...+ .+.+..+|+|+++ .|......+++++...+++|.
T Consensus 1 ~A~aL~~~g~~~~-v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVE-VYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp HHHHHHHTTTTSE-EEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-TTS
T ss_pred ChHHHHhCCCCeE-EEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCCCc
Confidence 4678888888899 999999 8888888654444433332 1224446998876 455667788888888888876
Q ss_pred EEEE
Q 041308 158 KLIA 161 (244)
Q Consensus 158 ~lii 161 (244)
.+.=
T Consensus 74 iv~D 77 (258)
T PF02153_consen 74 IVTD 77 (258)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.9 Score=41.58 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=63.0
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC--------------C------
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK--------------S------ 121 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~--------------~------ 121 (244)
.++.+|+=+|+| .|..+...++... .+ ++++|. +..++.+++.. .++..-|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHH
Confidence 457999999999 5777888887764 47 999999 88888887742 2222111100 1
Q ss_pred ------CCcceEEEeccccccCCHHHHHHH-HHHHHHHcCCCCEEEEecc
Q 041308 122 ------IHVVDAIFMKWVLTTWTDDECKLI-MENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 ------~p~~D~v~~~~~lh~~~~~~~~~~-l~~~~~~L~pgG~lii~d~ 164 (244)
...+|+|+..-..-.-+ ...+ .++..+.+||||.++.+-.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~---aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKP---APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCCCccc---CcchHHHHHHHhcCCCCEEEEEcc
Confidence 12359888665432211 1244 5999999999999988754
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.45 Score=39.97 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=74.4
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-----CCcceEEEeccccccCCH--
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-----IHVVDAIFMKWVLTTWTD-- 139 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-----~p~~D~v~~~~~lh~~~~-- 139 (244)
+++|+-||.|.+...+.+.. .+.+.++|. +..++..+.+-.-.+..+|+.+- .+..|+++...-+..++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999998765 442577898 87777776652223566777553 123499998776654442
Q ss_pred ------HHHHHHHHHHHHHcCC-CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 140 ------DECKLIMENYYKALLA-GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 140 ------~~~~~~l~~~~~~L~p-gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
+..-.++.++.+.++- .-+++++|.+..-.. .........+.+.|++.|+.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~----------------------~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLT----------------------HDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhc----------------------cCchHHHHHHHHHHHhCCcE
Confidence 1122244444333332 224666676533210 00112356778888999988
Q ss_pred eEEE
Q 041308 213 HLRA 216 (244)
Q Consensus 213 ~~~~ 216 (244)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6553
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.4 Score=37.74 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=66.0
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCC-----CCC----CCc--ceE
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDM-----FKS----IHV--VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~-----~~~----~p~--~D~ 127 (244)
++.++++|=+|+| .|.++...++.....+ +++.|+ +..++.|++. ..+......- .+. +.. .|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~-VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASD-VVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCc-EEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 6788999999999 5777888888876667 999999 9999999984 1111111111 000 111 366
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.+-+..++ ..++....++|+||.++++.+..+.
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred EEEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 66555543 4466778899999999998875543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.34 Score=41.11 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=41.5
Q ss_pred cceEEEEcCCccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeC----CCCCCCC---c-ceE
Q 041308 66 VKRLVDVGGSAGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGG----DMFKSIH---V-VDA 127 (244)
Q Consensus 66 ~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~g----d~~~~~p---~-~D~ 127 (244)
.-++||||+|.-. +.+--++.+ +++ +++.|+ +..++.|+++ .+|+++.. +++..+. + .|.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~-fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWS-FVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCe-EEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 4689999999765 444444444 789 999999 8888888853 67888654 3454421 1 499
Q ss_pred EEeccccccCCHH
Q 041308 128 IFMKWVLTTWTDD 140 (244)
Q Consensus 128 v~~~~~lh~~~~~ 140 (244)
.+|+--+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9999888764443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.78 E-value=1 Score=39.22 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=65.2
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CC-CC----CCC-C-cceEEEeccc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GD-MF----KSI-H-VVDAIFMKWV 133 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd-~~----~~~-p-~~D~v~~~~~ 133 (244)
..+|+=+||| .|.++..+++.....+ ++++|. +.-++.|++......+. .+ .. +.. . .+|+++-..-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~-Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASV-VIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCce-EEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 3499999999 6888888888887777 999999 99999998742222111 11 00 001 1 1488875544
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
....+..+.++++|||+++++-....+
T Consensus 248 --------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 --------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred --------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 124688899999999999998776544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.91 Score=38.65 Aligned_cols=90 Identities=12% Similarity=0.036 Sum_probs=52.0
Q ss_pred cceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 66 VKRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 66 ~~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
..+|.=||+|. +.++..+.+.....+ ++++|. +...+.+++..-......+..+.+..+|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGE-IVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 36788898874 334555554433236 888998 6666665543211111222211234469888663 33444
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
..+++++...++||..++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 5677888888888876554
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.76 Score=40.44 Aligned_cols=109 Identities=9% Similarity=0.113 Sum_probs=60.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccH----HHHHHHHHc---CCCCeEEEeechH-----HHHhCCCC---------CCee
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGD----CLRIILQKH---CFICEGINFDLPE-----VVAKAPSI---------PEVT 112 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~---p~~~~~~~~D~~~-----~i~~a~~~---------~~i~ 112 (244)
+.|++.+. -...-+|+|+|.|.|. +.+.|+++. |.++ +|+++.|. .++...++ -..+
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~Lr-IT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLR-ITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEE-EEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 44777766 4566799999999986 455555543 6778 99998732 12211111 1233
Q ss_pred EEe--CCCCCCC-C------cceEEE--eccccccCCHH------HHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 113 HIG--GDMFKSI-H------VVDAIF--MKWVLTTWTDD------ECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 113 ~~~--gd~~~~~-p------~~D~v~--~~~~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|.. .+-.+.+ + ..++++ +.+.|||+.++ ....+|+.+ +.|+|. .++++|...
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~-vvv~~E~ea 246 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPK-VVVLVEQEA 246 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCC-EEEEEeecC
Confidence 333 2222222 1 123333 55667888632 234566655 478996 555566543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.97 Score=38.07 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=58.0
Q ss_pred ceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC-CCCCCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM-FKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~-~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+|+=+|.| .|.+++.+.+.+.... +++.|. ...++.+....-+.-...+. ......+|+|+.+ .|-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~-i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva-----vPi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVR-IIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA-----VPIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEE-EEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe-----ccHHHH
Confidence 466777776 5677888888888877 899998 66666665432222111222 2234456999977 444566
Q ss_pred HHHHHHHHHHcCCCCEEE
Q 041308 143 KLIMENYYKALLAGRKLI 160 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~li 160 (244)
..+++++...|+||..+.
T Consensus 78 ~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 78 EEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHhcccCCCCCEEE
Confidence 788999988888876654
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.42 Score=35.09 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcccee
Q 041308 144 LIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFT 223 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 223 (244)
.+++++++.++|||.+.-... ...++..|.++||.+.+....+.-.
T Consensus 71 e~~~~l~~~~~~~~~l~Tys~----------------------------------a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYSS----------------------------------AGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES------------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHhCCCcEEEEeec----------------------------------hHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 689999999999998875211 2236888999999999988887777
Q ss_pred EEEeecCc
Q 041308 224 LFLSSKSN 231 (244)
Q Consensus 224 ~~~~~~~~ 231 (244)
.++.+.++
T Consensus 117 ~~~~a~~~ 124 (124)
T PF05430_consen 117 EMLRAVKP 124 (124)
T ss_dssp EEEEEEC-
T ss_pred hheEEEcC
Confidence 77776653
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.39 Score=39.66 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=53.7
Q ss_pred cceEEEEcCCccHHHHHH---HHHc--CCCCeEEEeec-hHHH------------------------------HhCCCC-
Q 041308 66 VKRLVDVGGSAGDCLRII---LQKH--CFICEGINFDL-PEVV------------------------------AKAPSI- 108 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l---~~~~--p~~~~~~~~D~-~~~i------------------------------~~a~~~- 108 (244)
+..|+++||=.|..+..+ ++.+ ++-+ +.++|- ..+- +..++.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~-i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRR-IYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCE-EEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 489999999888766544 3333 2334 778873 2111 111111
Q ss_pred ---CCeeEEeCCCCCCCCcc---eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 ---PEVTHIGGDMFKSIHVV---DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 ---~~i~~~~gd~~~~~p~~---D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+++.++.|.+.+.+|.. .+.++..=. .+.+ .....|..++..|.|||.+++=|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-DlYe-sT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-DLYE-STKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE----SHH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec-cchH-HHHHHHHHHHhhcCCCeEEEEeCC
Confidence 57999999996666652 332222111 2223 356889999999999999998443
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.8 Score=37.31 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=55.7
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~ 139 (244)
.++..+||=+||| .|.++..++++ ....+ ++++|. +.-++.+++.... ....+..+.. ..|+|+=.- ..-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~-vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~~-g~d~viD~~--G~~-- 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESK-LVVFGKHQEKLDLFSFADET-YLIDDIPEDL-AVDHAFECV--GGR-- 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCc-EEEEeCcHhHHHHHhhcCce-eehhhhhhcc-CCcEEEECC--CCC--
Confidence 3557899999975 56666777765 44557 888887 7666666542221 1111111111 137666221 110
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.....+.+..+.|+|||+++++-.
T Consensus 234 -~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 -GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -ccHHHHHHHHHhCcCCcEEEEEee
Confidence 012457888899999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.34 Score=34.60 Aligned_cols=81 Identities=25% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEeccccccCCHHHHH
Q 041308 74 GSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 74 ~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~~~~~~~~ 143 (244)
||.|.++..+++... +.+ ++++|. +..++.+++ ..+.++.||..++ +. .+|.+++..- .++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~-vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n- 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGID-VVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEEN- 76 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSE-EEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHH-
T ss_pred EcCCHHHHHHHHHHHhCCCE-EEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHH-
Confidence 455667777766543 235 999999 888887775 3488999999876 32 2466654422 33333
Q ss_pred HHHHHHHHHcCCCCEEEE
Q 041308 144 LIMENYYKALLAGRKLIA 161 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii 161 (244)
..+....+.+.|..+++.
T Consensus 77 ~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHCCCCeEEE
Confidence 344555567778877775
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.91 Score=37.43 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=50.1
Q ss_pred HHHhccCCCCCCcc--eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------CCeeEEe
Q 041308 54 TSVLDGYDGFKGVK--RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------PEVTHIG 115 (244)
Q Consensus 54 ~~l~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------~~i~~~~ 115 (244)
+.+++... ++++. +|||+=+|+|.-+..++.+ +++ ++.++. |.+....++. .|++++.
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 44666665 66665 9999999999999999987 456 899997 5433222210 3567777
Q ss_pred CCCCCCC---Cc-ceEEEecccc
Q 041308 116 GDMFKSI---HV-VDAIFMKWVL 134 (244)
Q Consensus 116 gd~~~~~---p~-~D~v~~~~~l 134 (244)
+|..+.+ +. .|+|++--.+
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCC
Confidence 7765432 22 3666655444
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=87.80 E-value=7.7 Score=28.04 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=52.4
Q ss_pred cceEEEEcCCccHH-HHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CC---cceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGDC-LRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IH---VVDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p---~~D~v~~~~~lh~~~~ 139 (244)
..+|++||-|-=.. +..|.++. +. ++..|+ +. .++ ..++++..|.++| +. .+|+|.+.. ++
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g--~d-v~atDI~~~---~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG--FD-VLATDINEK---TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC--Cc-EEEEecccc---cCc--ccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 46999999886654 44455443 56 888898 54 333 7899999999998 33 358887542 33
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 140 DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
++....+-++.+++ |..++|.-
T Consensus 81 pEl~~~ildva~aV--ga~l~I~p 102 (129)
T COG1255 81 PELQSAILDVAKAV--GAPLYIKP 102 (129)
T ss_pred HHHHHHHHHHHHhh--CCCEEEEe
Confidence 44444444455544 44555543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.4 Score=36.67 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-----CCCCeEEEeec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-----CFICEGINFDL 98 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~ 98 (244)
+.+...++|+|||.|.++..+.+.. +... ++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~-~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSR-FVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCcc-EEEEec
Confidence 5677899999999999999999987 4567 899997
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=87.37 E-value=6.3 Score=30.41 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=71.2
Q ss_pred EEcCCccHHHHHHHHHcC-CCC-eEEEeec-hHHHHhCCC---------CCCeeEE-eCCCCCC---C--Cc--ceEEEe
Q 041308 71 DVGGSAGDCLRIILQKHC-FIC-EGINFDL-PEVVAKAPS---------IPEVTHI-GGDMFKS---I--HV--VDAIFM 130 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p-~~~-~~~~~D~-~~~i~~a~~---------~~~i~~~-~gd~~~~---~--p~--~D~v~~ 130 (244)
=||=|.=.++..|++.+. ..+ ..|..|- ..+.+.-.. ...+.+. .-|..+. . .. .|.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777778999999876 333 1566676 555544442 1233332 2344332 2 12 499887
Q ss_pred cccccc-----------CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 131 KWVLTT-----------WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 131 ~~~lh~-----------~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
++---. ....-...+|+.+.+.|+++|.+.|.-....+ ++.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p----------------------------y~~ 133 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP----------------------------YDS 133 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC----------------------------Ccc
Confidence 755322 01123456789999999999999986542211 111
Q ss_pred HHHHHHHHhCCCCeEEEEEcc
Q 041308 200 QEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~~~~~ 220 (244)
=.+.++.+++||...+..++.
T Consensus 134 W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred ccHHHHHHhcCCEEEEEecCC
Confidence 123567778999888876654
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=87.33 E-value=14 Score=29.82 Aligned_cols=107 Identities=8% Similarity=0.071 Sum_probs=56.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCcc----HHHHHHHHHcCCCCeEEEeec-hHH-HHhCCC------CCCeeEEeCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAG----DCLRIILQKHCFICEGINFDL-PEV-VAKAPS------IPEVTHIGGDMFK 120 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G----~~~~~l~~~~p~~~~~~~~D~-~~~-i~~a~~------~~~i~~~~gd~~~ 120 (244)
..+++..+..-.+.+.|+++.++.| .++...+.++.+.+ .+++-. +.- .+..+. .+.++|+.|+..+
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR-~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGR-HVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCe-EEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 3344444431234578899865533 45566666777766 554433 222 222221 1456888887544
Q ss_pred C-C---CcceEEEeccccccCCHHHHH-HHHHHHHHHcCCCCEEEEecccCC
Q 041308 121 S-I---HVVDAIFMKWVLTTWTDDECK-LIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 121 ~-~---p~~D~v~~~~~lh~~~~~~~~-~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
. + ...|.++.-.= .++.. ++|+-+. +.|-|.+++......
T Consensus 108 ~~~~~~~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 108 EVMPGLKGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHhhccCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 3 3 33487765432 23334 5666432 556688887665433
|
The function of this family is unknown. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.22 E-value=2.8 Score=35.10 Aligned_cols=83 Identities=12% Similarity=-0.051 Sum_probs=49.7
Q ss_pred eEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+|. |.++..+.+. +.+ ++++|. +..++.+.+...+.....+. +....+|+|+++ .++....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHT-VYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHH
Confidence 455677763 4455666554 346 899998 77766665432222211111 113346988876 45666778
Q ss_pred HHHHHHHHcCCCCEE
Q 041308 145 IMENYYKALLAGRKL 159 (244)
Q Consensus 145 ~l~~~~~~L~pgG~l 159 (244)
+++++...++|+..+
T Consensus 73 ~~~~l~~~l~~~~ii 87 (279)
T PRK07417 73 PSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHhCCCCcEE
Confidence 889998888876433
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.30 E-value=2.4 Score=38.02 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=58.8
Q ss_pred cceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--C---Ce-eEEeC-CCCCC-CCc-----ceEEE
Q 041308 66 VKRLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPSI--P---EV-THIGG-DMFKS-IHV-----VDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~---~i-~~~~g-d~~~~-~p~-----~D~v~ 129 (244)
+..+.|+|.|.|. .+...+-+...-. ++.+|. ..|....... + .- -++.. -++.. +|. .|+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~-~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKRE-YSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccce-eEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4678888877555 4444443332223 788898 6665554432 1 11 11112 22222 332 39999
Q ss_pred eccccccCCHHH-HHH-HHHHHHHHcCCCCEEEEecccCC
Q 041308 130 MKWVLTTWTDDE-CKL-IMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 130 ~~~~lh~~~~~~-~~~-~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+.+.+|++.... ... .-...++..+||+.+++++....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999987543 222 23445667889999999987443
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.43 E-value=0.84 Score=39.81 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=31.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL 98 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~ 98 (244)
++..+.-+.+...++|+|.|.|.+++.+.-.+ ++. +.++|-
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~ls-V~aIeg 184 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLS-VKAIEG 184 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-Cce-EEEecc
Confidence 34333226788999999999999999887554 677 888986
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.22 E-value=0.22 Score=41.90 Aligned_cols=98 Identities=17% Similarity=0.040 Sum_probs=65.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~l 134 (244)
.+..|+|+=+|-|.++..++-.. +.+++.++|. |..++..++. +|+..+.||-..+-|. +|-|.+..+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl- 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL- 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccc-
Confidence 45799999999999998444332 3344899999 9888877753 6777778887776443 576664432
Q ss_pred ccCCHHHHHHHHHHHHHHcCC-CC-EEEEecccCCCC
Q 041308 135 TTWTDDECKLIMENYYKALLA-GR-KLIACEPVLPDD 169 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~p-gG-~lii~d~~~~~~ 169 (244)
|.. .+-.--+.++||| || .+-|.+.+.+++
T Consensus 272 ---PSs--e~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 272 ---PSS--EQGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred ---ccc--ccchHHHHHHhhhcCCcEEEEeccccccc
Confidence 221 2334445667887 44 777777776655
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.16 E-value=2.7 Score=35.84 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=62.6
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCC---CCCcceEEEeccccccCC
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFK---SIHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~---~~p~~D~v~~~~~lh~~~ 138 (244)
+.+|.=+|+| .|..+..++.-. +.+ ++++|+ ..-+...... .|+....-+... ....+|+++..-.+-.-.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~-Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GAD-VTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCe-eEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 4788889998 577777777443 567 999999 7777666653 566665544322 245579888665543333
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 139 DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+ .-+.++..+.||||+.++=+
T Consensus 246 aP--kLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 246 AP--KLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred Cc--eehhHHHHHhcCCCcEEEEE
Confidence 33 34578889999999988643
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=84.77 E-value=1.4 Score=37.79 Aligned_cols=121 Identities=13% Similarity=0.020 Sum_probs=71.6
Q ss_pred EEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CCcceEEEeccccccCC----
Q 041308 69 LVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IHVVDAIFMKWVLTTWT---- 138 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p~~D~v~~~~~lh~~~---- 138 (244)
|+|+=||.|.+...+.+.. .+.+..+|. +...+.-+.+ +. .+..+|+.+- +|..|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5899999999999998765 441355787 6666655543 33 4456777542 44568888766655544
Q ss_pred ----HHHHHHHHHHHHHHc---CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 139 ----DDECKLIMENYYKAL---LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 139 ----~~~~~~~l~~~~~~L---~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
++..-.++.++.+.+ +| .++++|.+..-. . ... ......+...|++.|+
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~-------------~-------~~~--~~~~~~i~~~l~~~GY 133 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLV-------------S-------HDK--GRTFKVIIETLEELGY 133 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHH-------------h-------ccc--chHHHHHHHHHHhCCC
Confidence 122234555554444 55 466677643211 0 001 1234567788889999
Q ss_pred CeEEE
Q 041308 212 PHLRA 216 (244)
Q Consensus 212 ~~~~~ 216 (244)
.+...
T Consensus 134 ~v~~~ 138 (315)
T TIGR00675 134 KVYYK 138 (315)
T ss_pred EEEEE
Confidence 86443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=4.6 Score=37.91 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=53.6
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~ 136 (244)
.+|+=+|+| .+++.+++.. .+.. ++++|. ++.++.+++ ....++.||..++ +. .+|+++..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~----- 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMR-ITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVIT----- 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----
Confidence 466666654 4444444432 2456 999999 888888876 5678899999775 32 24766643
Q ss_pred CCH-HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTD-DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~-~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.++ ++...+.. ..|.+.|.-+++..
T Consensus 472 ~~d~~~n~~i~~-~~r~~~p~~~IiaR 497 (601)
T PRK03659 472 CNEPEDTMKIVE-LCQQHFPHLHILAR 497 (601)
T ss_pred eCCHHHHHHHHH-HHHHHCCCCeEEEE
Confidence 223 33334444 45557788888763
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.65 E-value=1.1 Score=36.99 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=26.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcC--------CCCeEEEeec-hHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHC--------FICEGINFDL-PEVV 102 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~~D~-~~~i 102 (244)
.-+|+|+|+|+|.++..+++... .++ ++.++. |.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~-y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLR-YHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCE-EEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcce-EEEEcCCHHHH
Confidence 47999999999999999998643 246 888887 5443
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.61 E-value=3.5 Score=34.41 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=49.5
Q ss_pred eEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+|. |.++..+.+.....+ ++++|. +...+.+++..-+.. ..+. +....+|+|++. .++.....
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~-v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vila-----vp~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISK-VYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLA-----IPVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEe-----CcHHHHHH
Confidence 456677763 456666666544446 888898 666655543322211 1121 112236888866 56677778
Q ss_pred HHHHHHHHcCCCCEEE
Q 041308 145 IMENYYKALLAGRKLI 160 (244)
Q Consensus 145 ~l~~~~~~L~pgG~li 160 (244)
+++++.. ++||..++
T Consensus 74 ~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 74 ILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHhc-cCCCCEEE
Confidence 8888888 88876443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=84.57 E-value=3.2 Score=31.88 Aligned_cols=43 Identities=19% Similarity=-0.011 Sum_probs=30.2
Q ss_pred eEEEeccccccCC---------HHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 126 DAIFMKWVLTTWT---------DDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 126 D~v~~~~~lh~~~---------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
|.+.+.+++.|+- +.--.+.++++.++|||||.+++.=++-.+
T Consensus 65 D~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 65 DFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 7766666665542 111246789999999999999997766543
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=83.41 E-value=3.1 Score=30.53 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=43.5
Q ss_pred cceEEEEcCCccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CC---cceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IH---VVDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p---~~D~v~~~~~lh~~~~ 139 (244)
..++++||-|.=. .+..|.+.. .. ++++|. +. .+. ..+.++..|.++| +. .+|+|.+... +
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G--~d-V~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERG--FD-VIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP-----P 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS---E-EEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCcEEEECcCCCHHHHHHHHHcC--Cc-EEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC-----C
Confidence 4699999988655 455555554 66 899998 65 222 7899999999998 32 3588886543 2
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+...-+.++++.. |.-++|...
T Consensus 81 ~El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 81 PELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp TTSHHHHHHHHHHH--T-EEEEE-B
T ss_pred hHHhHHHHHHHHHh--CCCEEEECC
Confidence 33344455555543 556666544
|
; PDB: 2K4M_A. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=83.35 E-value=8.1 Score=36.47 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=55.7
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecccccc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~ 136 (244)
..+|+=+||| .|......+++ .+.. ++++|. ++.++.+++ ....++.||..++ +. .+|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~----- 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVK-MTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINA----- 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCC-EEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE-----
Confidence 3688888887 45544444433 2456 899998 888888876 5678899999775 32 24766644
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.++++.-..+-...|.+.|.-+++.
T Consensus 472 ~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 472 IDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred eCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 2333333334445555678777665
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=82.97 E-value=1.3 Score=39.75 Aligned_cols=91 Identities=14% Similarity=-0.012 Sum_probs=53.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEE------Eeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGI------NFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~------~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~ 138 (244)
..+|+=||||.=.-+.++--+-.+++ ++ ++|. +..-+.|.+ +. |..++..+-++.+|+|++. .|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvn-Vvvglr~~~id~~~~s~~kA~~-dG--F~v~~~~Ea~~~ADvVviL-----lP 106 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLD-ISYALRKEAIAEKRASWRKATE-NG--FKVGTYEELIPQADLVINL-----TP 106 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccce-eEEeccccccccccchHHHHHh-cC--CccCCHHHHHHhCCEEEEc-----CC
Confidence 48999999985444444433333444 33 2222 222222222 22 2223332225667998865 45
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|.....+.+++...||||..|.+.+-+
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 555567779999999999999987654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.84 E-value=1.1 Score=40.31 Aligned_cols=130 Identities=11% Similarity=0.029 Sum_probs=83.2
Q ss_pred cCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---
Q 041308 33 KKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--- 108 (244)
Q Consensus 33 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--- 108 (244)
+.++..-.|.+.|.+--..+....-.. ......+|-+|-|.|.+...+-...|... ++++.+ |.|++.++.+
T Consensus 266 r~~~l~s~~h~~m~~g~aL~~n~~~~~---~~~~~~~lvvg~ggG~l~sfl~~~~p~~~-i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 266 RKPELASQYHQMMIGGLALIMNRPPQK---LDTGGKQLVVGLGGGGLPSFLHMSLPKFQ-ITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred cCcccCcchhhhhhccceeccccCchh---ccccCcEEEEecCCCccccceeeecCccc-eeEEEEChhHhhccHhhhch
Confidence 344555567777766555433322222 22346788888888999999998899888 999999 9999999974
Q ss_pred ---CCeeEEeCCCCCC----C---Cc---ceEEEec----cccccCC---HH-HHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 109 ---PEVTHIGGDMFKS----I---HV---VDAIFMK----WVLTTWT---DD-ECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 109 ---~~i~~~~gd~~~~----~---p~---~D~v~~~----~~lh~~~---~~-~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.|.+++-.|-.+. . ++ .|+++.- . -|... .. -+..+|..+..+|.|-|.++|.=.+.+
T Consensus 342 ~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 342 MQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred hhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 4455544444322 1 11 3766632 2 33332 21 355789999999999999976544433
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=82.59 E-value=9.2 Score=32.36 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=52.6
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc-ceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~ 141 (244)
...++|=+|+| .|.++..+++... .+.++++|. +..++.+.+..-+ |..+.... .|+|+=.- ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~~~i-----~~~~~~~~g~Dvvid~~-----G~-- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGYEVL-----DPEKDPRRDYRAIYDAS-----GD-- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhcccc-----ChhhccCCCCCEEEECC-----CC--
Confidence 34678888865 7888888888764 442566777 6666666542111 11111122 37776331 11
Q ss_pred HHHHHHHHHHHcCCCCEEEEecc
Q 041308 142 CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+..+.+.|+|||+++++-.
T Consensus 211 -~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEEEee
Confidence 2456788889999999998754
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.20 E-value=4.4 Score=38.44 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=78.6
Q ss_pred cccccccCchHHHHHHHHHHcccccchH------------HH------hccCCC---CCCcceEEEEcCCccHHHHHHHH
Q 041308 27 AYSYYGKKPKMNGLMRKAMSRVFVPFMT------------SV------LDGYDG---FKGVKRLVDVGGSAGDCLRIILQ 85 (244)
Q Consensus 27 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~------------~l------~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~ 85 (244)
.||..++|+-..+.|.+++..+-..+.+ .+ ++..+. -.....|+=+|+|-|-+....++
T Consensus 641 TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLr 720 (1072)
T PTZ00357 641 VYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLH 720 (1072)
T ss_pred hHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHH
Confidence 4888999999999999998765432211 00 011110 01124689999999999887776
Q ss_pred HcC----CCCeEEEeec-hHHH---HhCC-C-C----------CCeeEEeCCCCCC-CC-------------cceEEEec
Q 041308 86 KHC----FICEGINFDL-PEVV---AKAP-S-I----------PEVTHIGGDMFKS-IH-------------VVDAIFMK 131 (244)
Q Consensus 86 ~~p----~~~~~~~~D~-~~~i---~~a~-~-~----------~~i~~~~gd~~~~-~p-------------~~D~v~~~ 131 (244)
... .++ +.+++- |+.+ ...+ . . .+|+++..|+.+- .+ ..|+||+.
T Consensus 721 Aak~~gvkVr-IyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 721 AVSALGVRLR-IFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHcCCcEE-EEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 543 345 777776 4421 1111 1 0 3589999999763 22 25888865
Q ss_pred cccccCCHHH-HHHHHHHHHHHcCC----CCE
Q 041308 132 WVLTTWTDDE-CKLIMENYYKALLA----GRK 158 (244)
Q Consensus 132 ~~lh~~~~~~-~~~~l~~~~~~L~p----gG~ 158 (244)
+|.-|-|.+ ....|.-+.+.||+ +|.
T Consensus 800 -LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 800 -LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred -hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 344444433 34567777777776 665
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.79 E-value=8.3 Score=33.64 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 143 KLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
..+|++..++||+||+++-..+.+.+-
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 578999999999999999887766544
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.70 E-value=3.9 Score=35.58 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc----C----CCCeEEEeec-hHHHH
Q 041308 34 KPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH----C----FICEGINFDL-PEVVA 103 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p----~~~~~~~~D~-~~~i~ 103 (244)
.|++...|-+....+--. +.+.+. .+.+.+++++|+|+|.++..+++.. | .++ +..++. ++..+
T Consensus 51 Apels~lFGella~~~~~----~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~-~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFLQ----LWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALS-YYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHHH----HHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcce-EEEEecCHHHHH
Confidence 355666666655432221 222232 3445789999999999999988764 4 456 788887 55443
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.93 E-value=7.2 Score=34.06 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred eEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+| .|.++..+.+.++... ++..|. ......+....-+.-...|..+....+|+|+++ .+++....
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~-i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVila-----vP~~~~~~ 75 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVF-IIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLA-----VPVDATAA 75 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeE-EEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEe-----CCHHHHHH
Confidence 45667776 3556666666666555 565554 322222221111111111111113346988876 45566778
Q ss_pred HHHHHHH-HcCCCCE
Q 041308 145 IMENYYK-ALLAGRK 158 (244)
Q Consensus 145 ~l~~~~~-~L~pgG~ 158 (244)
+++++.. .++|+-.
T Consensus 76 vl~~l~~~~l~~~~i 90 (359)
T PRK06545 76 LLAELADLELKPGVI 90 (359)
T ss_pred HHHHHhhcCCCCCcE
Confidence 8888887 4788743
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=80.54 E-value=2.3 Score=35.95 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=46.9
Q ss_pred CCeeEEeCCCCCCCCc-------ceEEEec-cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhh
Q 041308 109 PEVTHIGGDMFKSIHV-------VDAIFMK-WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180 (244)
Q Consensus 109 ~~i~~~~gd~~~~~p~-------~D~v~~~-~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~ 180 (244)
-+|+|+..|..+.++. .|+|++. +..|.+.++ +.++++|++.|++ |....
T Consensus 200 vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaKf------------- 257 (289)
T PF14740_consen 200 VKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAKF------------- 257 (289)
T ss_pred cEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-Ecchh-------------
Confidence 4578888877666543 3776654 566666664 5567899987775 43211
Q ss_pred cccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 181 ~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
..++..- ...--.+.+.+++++|||+...
T Consensus 258 mvdLrKE------q~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 258 MVDLRKE------QLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred heeCCHH------HHHHHHHHHHHHHHHCCCcccc
Confidence 1111000 0001156789999999998654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=80.54 E-value=2.6 Score=34.33 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCCCEEEE
Q 041308 142 CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii 161 (244)
....+++++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 45789999999999998886
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 244 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-41 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 2e-37 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 6e-37 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 2e-35 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 6e-34 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 5e-19 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 2e-18 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-17 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 7e-14 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 8e-14 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 8e-14 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-06 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 1e-66
Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 8/226 (3%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + + M + +L+ Y
Sbjct: 138 MESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELY 196
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG G + I + I +G+NFDLP V+++AP P VTH+GGDMFK
Sbjct: 197 HGFEGLGTLVDVGGGVGATVAAIAAHYPTI-KGVNFDLPHVISEAPQFPGVTHVGGDMFK 255
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
+ D I MKW+L W+D C +++N Y AL A K++ + +LP + + ++ +
Sbjct: 256 EVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVF 315
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP-----HLRAFISII 221
D+ ++ + G+ + E+EF+ L GF ++ A I
Sbjct: 316 HVDMIMLA-HNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAI 360
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 2e-66
Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W EAV+D I+ F VHG Y + GK KMN + K+M V M +L+ Y
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 204
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG +G L +I+ K+ I +GINFDLP+V+ AP + + H+GGDMF
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDMFA 263
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DA+ +K V W+D++C + N +KAL K+I E +LP++ N S+ ++ +
Sbjct: 264 SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR------AFISII 221
D + G+ +TE+++++L +GF + + ++
Sbjct: 324 TLDNLMFITVG--GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 368
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 3e-65
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 12/229 (5%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
++ + + + + + F G + + K P+ N AM+ ++ D
Sbjct: 124 SGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCD 183
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
F G++ +VDVGG G +II + + + I FD P+VV +T++GGDMF
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVENLSGSNNLTYVGGDMFT 242
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKAL---LAGRKLIACEPVLPDDSNESQRTR 177
SI DA+ +K++L WTD +C I++ +A+ K+ + V+ +E+Q T+
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQ 302
Query: 178 ALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR-----AFISII 221
L D+ + + GK + E+E+K+L GF H + F+S+I
Sbjct: 303 IKLLMDVNMACL---NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLI 348
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 1e-64
Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W + +A+L+ I PF K +G + Y+G ++N + K MS M +L+ Y
Sbjct: 140 LEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
+GF+G+ +VDVGG G +I+ K+ INFDLP V+ AP+ V H+GGDMF
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDLPHVIQDAPAFSGVEHLGGDMFD 257
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
+ DAIF+KW+ W+D+ C +++N Y AL K+I E +LP + S T+ ++
Sbjct: 258 GVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI 317
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR-----AFISII 221
D +M Y GK +TE+EF+ L ++GF + ++
Sbjct: 318 HTDA-LMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVM 362
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 193 bits (491), Expect = 2e-60
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 1 MSAWPLVHEAVL-DPTIEPFAKVHGEPAYSYYGKKPKMNGLMR--KAMSRVFVPFMTSVL 57
+ W + D F GE + + K + + L AM+ F +
Sbjct: 126 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQ 185
Query: 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGD 117
+ F+G++ LVDVGG G ++I + + FD P+VV + +GGD
Sbjct: 186 ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLK-CTVFDQPQVVGNLTGNENLNFVGGD 244
Query: 118 MFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKAL---LAGRKLIACEPVLPDDSNESQ 174
MFKSI DA+ +KWVL W D++ I++N +A+ K+I + + + S++
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304
Query: 175 RTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR-----AFISII 221
T L+ D+ ++T++ GK +T+QE+++L + GF + F S+I
Sbjct: 305 LTELQLDYDLVMLTMFL--GKERTKQEWEKLIYDAGFSSYKITPISGFKSLI 354
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-56
Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 19/231 (8%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ V A+ FA + G +Y+ ++ L + M V +
Sbjct: 122 WTMSHRVASALGPERP-AFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG 180
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAK----APSIPE-VTHIG 115
D F + DVGG G L +L++H + +G+ D EVVA+ AP + +
Sbjct: 181 D-FPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVVARHRLDAPDVAGRWKVVE 238
Query: 116 GDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQR 175
GD + + D +K +L W D++ I+ N + + A +++ + V+P+ ++ Q
Sbjct: 239 GDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQS 298
Query: 176 TRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP-----HLRAFISII 221
E D ++ G+ +T E + L + G + +SI
Sbjct: 299 K----EMDFMMLAART--GQERTAAELEPLFTAAGLRLDRVVGTSSVMSIA 343
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 3e-56
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 21/246 (8%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
A+ + + V +A +G P + + MS + D Y
Sbjct: 120 DLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY 178
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE-------VTH 113
D + V+ ++DVGG G L I + + G +L +A VT
Sbjct: 179 D-WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVELAGPAERARRRFADAGLADRVTV 236
Query: 114 IGGDMFKSI-HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172
GD FK + D + + +VL W+D++ I+ +AL G +L+ + +
Sbjct: 237 AEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA 296
Query: 173 SQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNF 232
+ LL D+ ++T G+ +T E L S G A S + S+ F
Sbjct: 297 DRFFSTLL--DLRMLTFMG--GRVRTRDEVVDLAGSAGL----ALASERTS--GSTTLPF 346
Query: 233 SFWILE 238
F ILE
Sbjct: 347 DFSILE 352
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 8e-56
Identities = 42/239 (17%), Positives = 94/239 (39%), Gaps = 26/239 (10%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
++ + +A+ + ++G+P Y +P + ++ + Y
Sbjct: 121 DISFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY 179
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE-------VTH 113
D + V+ ++DVGG G I ++ + ++ V A S + V
Sbjct: 180 D-WTNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEMAGTVDTARSYLKDEGLSDRVDV 237
Query: 114 IGGDMFKSI-HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172
+ GD F+ + DAI + +VL W D + I+ +AL G +++ E +++
Sbjct: 238 VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF 297
Query: 173 SQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF----------PHLRAFISII 221
+++ L D+ ++ G +T +++ L S G P + +S++
Sbjct: 298 NEQFTEL---DLRMLVFLG--GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLL 351
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 3e-55
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 18/223 (8%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
AW + +V F +G + + PK L +AM V + V Y
Sbjct: 140 WRAWEQLTHSVRTGEA-SFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY 198
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE-------VTH 113
D F G VD+GG G + +L + G + P V +A +
Sbjct: 199 D-FSGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLERPPVAEEARELLTGRGLADRCEI 256
Query: 114 IGGDMFKSI-HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172
+ GD F++I D +K VL W DD+ I+ A+ +L+ + ++ +
Sbjct: 257 LPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA 316
Query: 173 SQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
S L D+ ++ + G ++E EF L +G R
Sbjct: 317 ST-----LFVDLLLLVLVG--GAERSESEFAALLEKSGLRVER 352
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 8e-55
Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 24/233 (10%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ + ++ + +G + G P ++ MS T + Y
Sbjct: 107 DLGFVELAHSIRTGQP-AYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY 165
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE-------VTH 113
D + + +VDVGG +G L +L H + G DL + A
Sbjct: 166 D-WAALGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDLQGPASAAHRRFLDTGLSGRAQV 223
Query: 114 IGGDMFKSI-HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172
+ G F + + VL W D I+ +A +G ++ E V D+
Sbjct: 224 VVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--- 280
Query: 173 SQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR----AFISII 221
A D+ ++T + GK ++ E +L G +++SI+
Sbjct: 281 ----HAGTGMDLRMLTYFG--GKERSLAELGELAAQAGLAVRAAHPISYVSIV 327
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 7e-52
Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 24/234 (10%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+AW EA+L T F GE YSY + P AM +
Sbjct: 107 HAAWTPACEALLSGTP-GFELAFGEDFYSYLKRCPDAGRRFLLAMK-ASNLAFHEIPRLL 164
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE-------VTH 113
D F+G + VDVGG +G+ + ILQ G+ D + A V+
Sbjct: 165 D-FRG-RSFVDVGGGSGELTKAILQAEPSA-RGVMLDREGSLGVARDNLSSLLAGERVSL 221
Query: 114 IGGDMFKSI-HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172
+GGDM + + D + ++ + ++ N +A+ +++ E + E
Sbjct: 222 VGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISAS--E 279
Query: 173 SQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR-----AFISII 221
L D+ + G+H+T +E L GF R +I
Sbjct: 280 PSPMSVLW--DVHLFMA--CAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMI 329
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 5e-39
Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 13/201 (6%)
Query: 23 HGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRI 82
+ + Y + N + + +L+ GVK+++DVGG GD
Sbjct: 149 NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAA 207
Query: 83 ILQKHCFICEGINFDLPEVVAKAPSIPE-------VTHIGGDMFK-SIHVVDAIFMKWVL 134
+L+ + + +LP + + I D++K S DA+ +L
Sbjct: 208 MLKHFPEL-DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL 266
Query: 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194
+ + ++ + + A+ +G +L+ + V+ D N + + I + +
Sbjct: 267 YSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHY---ILGAGMPFSVL 323
Query: 195 KHKTEQEFKQLGFSTGFPHLR 215
K + +K++ S G+ +
Sbjct: 324 GFKEQARYKEILESLGYKDVT 344
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-37
Identities = 37/236 (15%), Positives = 75/236 (31%), Gaps = 27/236 (11%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
WP + E + K S + + AM R+ P + V +
Sbjct: 122 WDNWPRLGEILRSE------KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG 175
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE-------VTH 113
F + ++D+ G G L +L++H + G +DLP A V
Sbjct: 176 V-FARARTVIDLAGGHGTYLAQVLRRHPQL-TGQIWDLPTTRDAARKTIHAHDLGGRVEF 233
Query: 114 IGGDMFKSIHVV----DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169
++ + + D + + L + E + ++ + + G L+ + DD
Sbjct: 234 FEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDD 293
Query: 170 SNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL----GFSTGFPHLRAFISII 221
+ A + V T G+ + G + G + + +I
Sbjct: 294 RVTPALS-ADFSLHMMVNT---NHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLI 345
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 9e-35
Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 28/228 (12%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYG---KKPKMNGLMRKAMSRVFVPFMTSVL 57
+ + + AVL G A S G + + KAMS + +
Sbjct: 107 TNGFNDLTAAVLK----------GGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIA 156
Query: 58 DGYD-GFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE------ 110
+ +++D+ S G + Q + E D V+ A
Sbjct: 157 QLVNENKIEPLKVLDISASHGLFGIAVAQHNPNA-EIFGVDWASVLEVAKENARIQGVAS 215
Query: 111 -VTHIGGDMFKSIHVV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167
I G F+ + D + + L + C+ ++ AL K+I + +
Sbjct: 216 RYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275
Query: 168 DDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
D A + VM G T E++ + + GF H +
Sbjct: 276 SDRITPPDAAAF---SL-VMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-34
Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 18/225 (8%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSY---YGKKPKMNGLMRKAMSRVFVPFMTSVL 57
+ EA+L+ KV GE Y ++ L
Sbjct: 114 YQGLFHLEEALLNGRP-EGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKAL 172
Query: 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE------- 110
+ KRL+D+GG+ G +Q + + E DLP+ +
Sbjct: 173 EIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDLPQQLEMMRKQTAGLSGSER 230
Query: 111 VTHIGGDMFKSIHVV----DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166
+ G ++ DA++M L ++++E I+ +++ K+ E +
Sbjct: 231 IHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLW 290
Query: 167 PDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
E+ L + ++ + K + + + G
Sbjct: 291 DRQRYETASY-CLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-06
Identities = 21/178 (11%), Positives = 50/178 (28%), Gaps = 11/178 (6%)
Query: 39 GLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL 98
G + F+ L G +D G G + +L + ++
Sbjct: 53 GHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT- 111
Query: 99 PEVVAKA------PSIPEVTHIGGDMFK---SIHVVDAIFMKWVLTTWTDDECKLIMENY 149
+ + +A + + D I+++WV+ TD +
Sbjct: 112 EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRC 171
Query: 150 YKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207
+L ++ + + + ++ V I + G +E +Q
Sbjct: 172 KGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE-RQENL 228
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKA----PSIPEVTHIGGDMFK-- 120
R +D G G + +L K + + ++ +A +P I M
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLEPV-KHMLEEAKRELAGMPVGKFILASMETAT 153
Query: 121 -SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169
+ D I ++W TD + ++ +AL + E D
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD 203
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 244 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.97 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.97 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.97 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.97 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.97 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.97 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.92 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.89 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.85 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.85 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.84 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.84 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.84 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.83 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.83 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.81 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.81 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.81 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.81 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.81 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.81 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.8 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.8 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.8 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.8 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.8 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.8 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.79 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.79 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.79 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.79 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.79 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.79 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.79 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.79 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.79 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.79 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.78 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.78 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.78 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.78 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.77 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.77 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.77 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.76 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.76 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.76 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.76 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.76 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.75 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.75 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.75 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.75 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.75 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.74 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.73 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.73 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.73 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.71 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.71 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.69 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.68 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.68 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.68 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.68 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.68 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.67 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.67 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.67 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.66 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.66 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.65 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.64 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.64 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.63 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.63 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.63 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.63 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.62 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.62 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.61 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.61 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.6 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.6 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.59 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.59 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.58 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.58 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.57 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.57 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.56 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.56 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.56 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.56 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.55 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.55 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.55 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.54 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.53 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.52 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.52 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.51 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.51 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.51 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.5 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.5 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.49 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.49 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.49 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.49 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.47 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.47 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.47 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.46 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.45 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.45 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.45 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.43 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.43 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.42 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.42 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.42 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.41 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.41 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.41 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.41 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.41 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.41 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.4 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.4 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.4 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.4 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.4 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.39 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.39 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.38 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.38 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.38 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.37 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.37 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.37 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.37 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.36 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.35 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.35 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.35 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.34 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.34 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.34 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.34 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.33 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.32 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.32 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.31 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.31 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.31 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.3 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.3 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.3 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.3 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.3 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.29 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.29 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.29 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.29 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.29 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.29 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.29 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.27 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.27 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.26 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.26 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.25 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.25 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.25 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.24 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.24 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.24 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.24 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.23 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.22 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.22 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.22 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.21 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.21 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.2 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.2 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.18 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.18 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.17 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.17 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.17 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.17 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.16 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.16 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.16 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.15 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.15 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.15 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.14 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.14 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.13 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.13 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.12 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.12 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.1 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.09 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.08 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.07 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.05 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.05 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.04 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.02 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.01 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.01 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.0 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.99 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.97 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.96 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.95 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.95 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.87 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.87 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.87 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.86 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.84 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.82 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.8 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.8 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.79 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.77 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.77 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.75 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.73 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.71 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.69 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.68 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.67 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.66 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.65 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.65 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.65 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.63 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.63 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.58 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.57 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.57 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.5 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.5 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.49 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.45 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.43 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.43 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.42 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.39 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.36 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.31 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.27 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.27 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.13 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.09 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.05 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.04 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.01 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.0 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.89 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.89 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.87 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.82 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.81 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.78 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.76 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.72 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.67 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.6 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.56 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.4 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.39 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.37 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.27 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.88 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.8 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.63 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.43 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.08 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 93.75 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.71 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.39 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 93.36 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 93.32 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 93.09 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.08 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 92.07 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.74 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.3 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 91.04 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 90.74 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 90.74 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 90.2 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.05 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 89.92 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.64 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.06 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 88.74 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.56 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.29 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 88.24 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 88.24 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 88.23 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 88.19 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 88.05 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 87.78 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 87.6 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 87.39 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 87.39 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.35 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 87.22 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 86.43 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 86.08 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 85.26 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 84.64 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 84.26 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 84.2 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 83.52 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 83.22 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 83.16 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 82.9 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 82.88 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 82.85 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 82.48 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 82.15 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 82.03 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 81.93 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 81.89 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 81.85 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 81.75 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 80.97 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 80.92 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 80.51 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 80.48 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 80.32 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=282.07 Aligned_cols=223 Identities=20% Similarity=0.297 Sum_probs=201.3
Q ss_pred CChhhHHHHHhCCCCCchhhhcCC---CcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGE---PAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGD 78 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~---~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~ 78 (244)
.+|.+|.+++++|+ +++...+|. ++|+++..+++....|+++|........+.+++.++ +++..+|||||||+|.
T Consensus 115 ~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~ 192 (353)
T 4a6d_A 115 RCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGA 192 (353)
T ss_dssp HHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSH
T ss_pred HHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCH
Confidence 46999999999999 889888874 467888899999999999999988888888999999 9999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeechHHHHhCCCC------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHH
Q 041308 79 CLRIILQKHCFICEGINFDLPEVVAKAPSI------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYK 151 (244)
Q Consensus 79 ~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~ 151 (244)
++..+++++|+++ ++++|+|.+++.+++. +||+++.+|++++ .|.+|+|++.++||+|+|+++.++|+++++
T Consensus 193 ~~~~l~~~~p~~~-~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~ 271 (353)
T 4a6d_A 193 LAKECMSLYPGCK-ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYH 271 (353)
T ss_dssp HHHHHHHHCSSCE-EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCce-eEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHh
Confidence 9999999999999 9999999999888742 7999999999987 666899999999999999999999999999
Q ss_pred HcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 152 ALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 152 ~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
+|+|||+++|+|.+.+++...+.. ...+|+.|+. ..+|++||.+||++++++|||+.+++........+++++|.
T Consensus 272 al~pgg~lli~e~~~~~~~~~~~~---~~~~dl~ml~--~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 272 TCKPGGGILVIESLLDEDRRGPLL---TQLYSLNMLV--QTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARKG 346 (353)
T ss_dssp HCCTTCEEEEEECCCCTTSCCCHH---HHHHHHHHHH--SSSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred hCCCCCEEEEEEeeeCCCCCCCHH---HHHHHHHHHH--hCCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEec
Confidence 999999999999998876544433 3567888887 77899999999999999999999999999888999999985
Q ss_pred h
Q 041308 232 F 232 (244)
Q Consensus 232 ~ 232 (244)
=
T Consensus 347 t 347 (353)
T 4a6d_A 347 T 347 (353)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=272.67 Aligned_cols=225 Identities=32% Similarity=0.638 Sum_probs=200.1
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|.+++|+|+ ++++..+|.++|+++..+++..+.|+++|..+.....+.+++.++.+++..+|||||||+|.++.
T Consensus 139 ~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~ 217 (364)
T 3p9c_A 139 ESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVA 217 (364)
T ss_dssp GGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHH
T ss_pred HHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHH
Confidence 57999999999999 99999999999999999999999999999998888788888888657888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+++++|+++ ++++|+|.+++.+++.++++++.+|+++++|.+|+|++.+++|+|+++++.++|++++++|||||+++|
T Consensus 218 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i 296 (364)
T 3p9c_A 218 AIAAHYPTIK-GVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVL 296 (364)
T ss_dssp HHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHCCCCe-EEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999 999999999999998899999999999988877999999999999999999999999999999999999
Q ss_pred ecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 162 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
.|.+.++....+........+|+.|+. ...+++.+|.++|++++++|||+.+++.....+..++-+.
T Consensus 297 ~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~ 363 (364)
T 3p9c_A 297 VQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363 (364)
T ss_dssp EECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred EEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEe
Confidence 999987764333222333567777774 3578999999999999999999999999988777666543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=272.16 Aligned_cols=227 Identities=33% Similarity=0.642 Sum_probs=202.1
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|.+++|+|. ++++..+|.++|+++..+++..+.|+++|..+.....+.+++.++.+++..+|||||||+|.++.
T Consensus 141 ~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~ 219 (368)
T 3reo_A 141 EPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVAS 219 (368)
T ss_dssp GGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHH
T ss_pred hhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHH
Confidence 57999999999999 99999999999999999999999999999998888788899888657888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+++++|+++ ++++|+|.+++.+++.++++++.+|+++++|.+|+|++.+++|+|+++++.++|++++++|||||+++|
T Consensus 220 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 220 MIVAKYPSIN-AINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp HHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHhCCCCE-EEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999 999999999999998899999999999888878999999999999999999999999999999999999
Q ss_pred ecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 162 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
.|.+.++....+........+|+.|+. ...+++.+|.++|++++++|||+.+++.....+..++...|+
T Consensus 299 ~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k~ 367 (368)
T 3reo_A 299 AEYILPPSPDPSIATKVVIHTDALMLA-YNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLKT 367 (368)
T ss_dssp EECCCCSSCCCCHHHHHHHHHHHHHHH-HSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEECC
T ss_pred EEeccCCCCCCchhhhHHHhhhHHHHh-hcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEeC
Confidence 999887764433333334567777775 345899999999999999999999999999887777766654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=250.29 Aligned_cols=220 Identities=20% Similarity=0.317 Sum_probs=191.9
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|++++|+|+ +++...+|.++|+++..+++..+.|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 123 ~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~ 200 (348)
T 3lst_A 123 TMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLL 200 (348)
T ss_dssp HHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHH
T ss_pred HHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHH
Confidence 46999999999999 899999999999999999999999999999998888889999998 9999999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCC-----CCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCC
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPS-----IPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAG 156 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~-----~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg 156 (244)
.+++++|+++ ++++|++.++..++. .++++++.+|+++++|.+|+|++.+++||++++++.++|++++++||||
T Consensus 201 ~l~~~~p~~~-~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkpg 279 (348)
T 3lst_A 201 TVLREHPGLQ-GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAH 279 (348)
T ss_dssp HHHHHCTTEE-EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHCCCCE-EEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999 999999877773332 1689999999997788669999999999999999999999999999999
Q ss_pred CEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 157 RKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 157 G~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
|+++|.|.+.++... +. ....+++.++. ..+++.++.++|++++++|||+++++........++.+++
T Consensus 280 G~l~i~e~~~~~~~~-~~---~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 280 GRVLVIDAVVPEGND-AH---QSKEMDFMMLA--ARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CEEEEEECCBCSSSS-CC---HHHHHHHHHHH--TTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred CEEEEEEeccCCCCC-cc---hhhhcChhhhh--cCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 999999998876532 21 12466777776 5788999999999999999999999988666666665543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=250.82 Aligned_cols=224 Identities=34% Similarity=0.614 Sum_probs=180.2
Q ss_pred CChhhHHHHHhCC-CCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHH
Q 041308 2 SAWPLVHEAVLDP-TIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 2 ~~w~~L~~~~~~g-~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 80 (244)
.+|.+|++++++| + ++++..+|.++|+++..+++..+.|+++|........+.+++.++.+++..+|||||||+|.++
T Consensus 146 ~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 224 (372)
T 1fp1_D 146 QVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNL 224 (372)
T ss_dssp HHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHH
T ss_pred HHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHH
Confidence 3689999999999 7 8898888989999999999999999999998887777888888865778899999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
..+++++|+++ ++++|++.+++.+++.++++++.+|+++++|.+|+|++.+++||++++++.++|++++++|||||+++
T Consensus 225 ~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~ 303 (372)
T 1fp1_D 225 ELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 303 (372)
T ss_dssp HHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHCCCCe-EEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999 99999999999999888999999999988777899999999999999998999999999999999999
Q ss_pred EecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccce-eEEEeec
Q 041308 161 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF-TLFLSSK 229 (244)
Q Consensus 161 i~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~~~~~ 229 (244)
|.|...++....+........+++.++. ..+++.++.++|+++++++||+++++.....+ ..++.++
T Consensus 304 i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~ 371 (372)
T 1fp1_D 304 IVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371 (372)
T ss_dssp EEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEE
T ss_pred EEEeccCCCCccchHHHHHHHhhHHHHh--ccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEe
Confidence 9998877654322222133466776664 45688899999999999999999999884433 4555544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=247.33 Aligned_cols=216 Identities=19% Similarity=0.266 Sum_probs=190.9
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|++++++|+ +++...+|.++|+++..+++..+.|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 108 ~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~ 185 (332)
T 3i53_A 108 LGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLS 185 (332)
T ss_dssp GGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHH
T ss_pred HHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHH
Confidence 57999999999999 889888998999999999999999999999887777778888888 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+.+ ++++|+|.+++.+++. ++++++.+|+++++|. +|+|++.+++|+++++++.++|++++++|
T Consensus 186 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L 264 (332)
T 3i53_A 186 ALLTAHEDLS-GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAA 264 (332)
T ss_dssp HHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCe-EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999888752 7899999999977884 69999999999999998999999999999
Q ss_pred CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 154 LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 154 ~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
+|||+++|.|.+.++. . + ...+++.++. ..+++.+|.++|++++++|||+++++..... ..++.+++
T Consensus 265 ~pgG~l~i~e~~~~~~-~-~-----~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 265 GSGGVVLVIEAVAGDE-H-A-----GTGMDLRMLT--YFGGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp TTTCEEEEEECCCC-----C-----CHHHHHHHHH--HHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CCCCEEEEEeecCCCC-C-c-----cHHHHHHHHh--hCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999987765 1 1 1356777776 5789999999999999999999999998877 66666654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=246.63 Aligned_cols=222 Identities=27% Similarity=0.453 Sum_probs=192.2
Q ss_pred CChhhHHHHHhCC--CCCchhhhcCCCcccccccCchHHH--HHHHHHHcccccchHHHhccC--CCCCCcceEEEEcCC
Q 041308 2 SAWPLVHEAVLDP--TIEPFAKVHGEPAYSYYGKKPKMNG--LMRKAMSRVFVPFMTSVLDGY--DGFKGVKRLVDVGGS 75 (244)
Q Consensus 2 ~~w~~L~~~~~~g--~~~~~~~~~g~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~l~~~~--~~~~~~~~vLDvG~G 75 (244)
.+|.+|++++|+| . ++++..+|.++|+++..+++..+ .|+++|........ .+++.+ + +++..+|||||||
T Consensus 127 ~~~~~L~~~l~~g~~~-~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G 203 (358)
T 1zg3_A 127 DMWSSSKKWFNEDKEQ-TLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGG 203 (358)
T ss_dssp GGGGGHHHHHHCSCCC-CHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCT
T ss_pred HHHHHHHHHHhCCCCC-ChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCC
Confidence 5799999999999 5 78888889899999999999999 99999988777655 778877 4 6777999999999
Q ss_pred ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCC
Q 041308 76 AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLA 155 (244)
Q Consensus 76 ~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~p 155 (244)
+|.++..+++++|+++ ++++|++.+++.+++.++++++.+|+++++|.+|+|++.+++|+++++++.++|++++++|+|
T Consensus 204 ~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p 282 (358)
T 1zg3_A 204 TGGVTKLIHEIFPHLK-CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISH 282 (358)
T ss_dssp TSHHHHHHHHHCTTSE-EEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGG
T ss_pred cCHHHHHHHHHCCCCe-EEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999 999999999999988788999999999888878999999999999999999999999999999
Q ss_pred ---CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 156 ---GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 156 ---gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
||+++|.|...++....+........+++.|+. ..+++.++.++|+++++++||+.+++....+...++.++
T Consensus 283 ~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 357 (358)
T 1zg3_A 283 KGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT--MFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357 (358)
T ss_dssp GGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEE
T ss_pred CCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc--cCCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEe
Confidence 999999999887654322111234567777775 567899999999999999999999998877666666554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=249.71 Aligned_cols=219 Identities=22% Similarity=0.376 Sum_probs=195.4
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|++++++|+ +++...+|.++|+++..+++..+.|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 141 ~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~ 218 (369)
T 3gwz_A 141 RAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMA 218 (369)
T ss_dssp HHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred HHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHH
Confidence 46999999999999 889988998999999999999999999999988888888999998 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCC-------CCCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPS-------IPEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~-------~~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+++ ++++|+|.+++.+++ .++++++.+|+++++|. +|+|++.+++|+++++++.++|++++++|
T Consensus 219 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L 297 (369)
T 3gwz_A 219 AVLDAFPGLR-GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAM 297 (369)
T ss_dssp HHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCe-EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHc
Confidence 9999999999 999999999988875 26899999999977885 69999999999999999999999999999
Q ss_pred CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE-ccceeEEEeecC
Q 041308 154 LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI-SIIFTLFLSSKS 230 (244)
Q Consensus 154 ~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~~~~~~ 230 (244)
+|||+++|.|.+.++... +. ...+++.++. ..+++.+|.++|++++++|||+++++.. ......++.+++
T Consensus 298 ~pgG~l~i~e~~~~~~~~-~~----~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 298 KPDSRLLVIDNLIDERPA-AS----TLFVDLLLLV--LVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CTTCEEEEEEEBCCSSCC-HH----HHHHHHHHHH--HHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CCCCEEEEEEeccCCCCC-Cc----hhHhhHHHHh--hcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 999999999998877632 22 3467777776 5789999999999999999999999998 566777776654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=243.75 Aligned_cols=221 Identities=27% Similarity=0.428 Sum_probs=190.0
Q ss_pred CChhhHHHHHh-CCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccC--CCCCCcceEEEEcCCccH
Q 041308 2 SAWPLVHEAVL-DPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY--DGFKGVKRLVDVGGSAGD 78 (244)
Q Consensus 2 ~~w~~L~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~~~~vLDvG~G~G~ 78 (244)
.+|.+|++++| +|+ ++++..+|.++|+++..+++..+.|+++|........+. ++.+ + +++..+|||||||+|.
T Consensus 125 ~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~ 201 (352)
T 1fp2_A 125 GSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGT 201 (352)
T ss_dssp HGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSH
T ss_pred HHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccH
Confidence 46999999999 998 899988899999999999999999999999888776666 7777 4 7788999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCC---
Q 041308 79 CLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLA--- 155 (244)
Q Consensus 79 ~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~p--- 155 (244)
++..+++++|+.+ ++++|++.|++.+++.++++++.+|+++++|.+|+|++.+++||++++++.++|++++++|||
T Consensus 202 ~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~ 280 (352)
T 1fp2_A 202 TAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGK 280 (352)
T ss_dssp HHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHCCCCe-EEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999 999999999999998788999999998888878999999999999999888999999999999
Q ss_pred CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 156 GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 156 gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
||+++|.|...++....+........+++.++. .+++.++.++|+++++++||+.+++....+...++.++
T Consensus 281 gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 351 (352)
T 1fp2_A 281 RGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351 (352)
T ss_dssp CCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEeecCCCCCccchhhhHhhccHHHHh---ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEe
Confidence 999999999877653321111123456666664 34788999999999999999999998876666666654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=237.57 Aligned_cols=217 Identities=23% Similarity=0.332 Sum_probs=190.8
Q ss_pred ChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHH
Q 041308 3 AWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRI 82 (244)
Q Consensus 3 ~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~ 82 (244)
.|.+|++++++|+ ++++..+|.++|+++..+++..+.|+++| .......+.+++.++ +++ .+|||||||+|.++..
T Consensus 109 ~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~ 184 (334)
T 2ip2_A 109 AWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKA 184 (334)
T ss_dssp HTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHH
T ss_pred HHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHH
Confidence 6899999999999 89988889899999999999999999999 888777888999888 888 9999999999999999
Q ss_pred HHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHcC
Q 041308 83 ILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKALL 154 (244)
Q Consensus 83 l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~ 154 (244)
+++.+|+.+ ++++|++.+++.+++. ++++++.+|+++++|. +|+|++.+++|+++++++.+++++++++|+
T Consensus 185 l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~ 263 (334)
T 2ip2_A 185 ILQAEPSAR-GVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMA 263 (334)
T ss_dssp HHHHCTTCE-EEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCCE-EEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcC
Confidence 999999999 9999998888888753 6899999999988776 599999999999999999999999999999
Q ss_pred CCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 155 AGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 155 pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
|||++++.|...++... +. ....+++.++. ..++..++.++|+++++++||+++++....+...++.++|
T Consensus 264 pgG~l~i~e~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 264 GDGRVVVIERTISASEP-SP---MSVLWDVHLFM--ACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp TTCEEEEEECCBCSSSC-CH---HHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CCCEEEEEEeccCCCCC-cc---hhHHhhhHhHh--hCCCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999998776532 22 23456666665 4578889999999999999999999988877777777765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=230.04 Aligned_cols=221 Identities=19% Similarity=0.316 Sum_probs=190.7
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|.+.+++|+ ++++..+|.++|+++..+++....|+..|........+.+++.++ +++..+|||||||+|.++.
T Consensus 122 ~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~ 199 (360)
T 1tw3_A 122 ISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAA 199 (360)
T ss_dssp GGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHH
Confidence 57999999999999 888888898999988889999999999999888888888999998 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+++ ++++|++.+++.++++ ++++++.+|+++++|. +|+|++.+++|+++++++.+++++++++|
T Consensus 200 ~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L 278 (360)
T 1tw3_A 200 AIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEAL 278 (360)
T ss_dssp HHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTE
T ss_pred HHHHhCCCCE-EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhc
Confidence 9999999999 9999998888887752 4899999999987777 69999999999999998889999999999
Q ss_pred CCCCEEEEeccc-CCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccce-----eEEEe
Q 041308 154 LAGRKLIACEPV-LPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF-----TLFLS 227 (244)
Q Consensus 154 ~pgG~lii~d~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~~~~ 227 (244)
+|||++++.|.. .++... +. ....++..++. ..++..++.++|+++++++||+++++...... ..++.
T Consensus 279 ~pgG~l~i~e~~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~ 352 (360)
T 1tw3_A 279 EPGGRILIHERDDLHENSF-NE---QFTELDLRMLV--FLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLV 352 (360)
T ss_dssp EEEEEEEEEECCBCGGGCC-SH---HHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEE
T ss_pred CCCcEEEEEEEeccCCCCC-cc---hhhhccHHHhh--hcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEE
Confidence 999999999987 554422 11 12355666655 45788899999999999999999999887654 67777
Q ss_pred ecCc
Q 041308 228 SKSN 231 (244)
Q Consensus 228 ~~~~ 231 (244)
++|+
T Consensus 353 ~~~~ 356 (360)
T 1tw3_A 353 LAPA 356 (360)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7765
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-32 Score=232.92 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=174.6
Q ss_pred CChhhHHHHHhCCCCCchhhhcC--CCcccccccCchHHH----HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCC
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHG--EPAYSYYGKKPKMNG----LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGS 75 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g--~~~~~~~~~~~~~~~----~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G 75 (244)
++|.+|++++|+|+ +++...+| .++|+++..+++..+ .|+..|..... ..+++.+. ..+..+|||||||
T Consensus 115 ~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G 189 (363)
T 3dp7_A 115 QGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGN 189 (363)
T ss_dssp HHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCT
T ss_pred hhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCC
Confidence 47999999999999 78887887 578999999998766 36666655432 23444433 3567899999999
Q ss_pred ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC---CCc-ceEEEeccccccCCHHHHHH
Q 041308 76 AGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS---IHV-VDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 76 ~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~---~p~-~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.++..+++++|+.+ ++++|+|.+++.++++ ++++++.+|++++ +|. +|+|++.+++|+|+++++.+
T Consensus 190 ~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~ 268 (363)
T 3dp7_A 190 TGKWATQCVQYNKEVE-VTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVIS 268 (363)
T ss_dssp TCHHHHHHHHHSTTCE-EEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHH
T ss_pred cCHHHHHHHHhCCCCE-EEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHH
Confidence 9999999999999999 9999999999888753 5899999999985 664 59999999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEecccCCCCCCchH-HhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccce-
Q 041308 145 IMENYYKALLAGRKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF- 222 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii~d~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~- 222 (244)
+|++++++|||||+++|.|.+.++...... ........++.++. ..+++.+|.++|++++++|||+++++.+..+.
T Consensus 269 ~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~ 346 (363)
T 3dp7_A 269 ILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA--NGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLG 346 (363)
T ss_dssp HHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS--CSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTT
T ss_pred HHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh--CCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 999999999999999999998876533211 10111222333343 45678899999999999999999999876553
Q ss_pred eEEEeecCc
Q 041308 223 TLFLSSKSN 231 (244)
Q Consensus 223 ~~~~~~~~~ 231 (244)
..++..++.
T Consensus 347 ~svi~~~~~ 355 (363)
T 3dp7_A 347 HSILQCRLK 355 (363)
T ss_dssp BEEEEEEEC
T ss_pred ceEEEEeec
Confidence 566665554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=231.15 Aligned_cols=221 Identities=23% Similarity=0.294 Sum_probs=188.4
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|++++++|+ +++...+|.++|+++..+++....|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 121 ~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~ 198 (374)
T 1qzz_A 121 LAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLA 198 (374)
T ss_dssp GGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHH
T ss_pred HHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHH
Confidence 57899999999999 888888899999999999999999999999888888888999988 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+.+ ++++|++.+++.++++ ++++++.+|+++++|. +|+|++.+++||++++++.+++++++++|
T Consensus 199 ~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L 277 (374)
T 1qzz_A 199 AIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRAL 277 (374)
T ss_dssp HHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHE
T ss_pred HHHHHCCCCE-EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhc
Confidence 9999999999 9999998898888752 4899999999887777 69999999999999998889999999999
Q ss_pred CCCCEEEEecc--cCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcccee-----EEE
Q 041308 154 LAGRKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFT-----LFL 226 (244)
Q Consensus 154 ~pgG~lii~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~~~ 226 (244)
+|||++++.|. ..++... +. ....++..++. ..++..++.++|.++++++||+++++....... .++
T Consensus 278 ~pgG~l~i~e~~~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i 351 (374)
T 1qzz_A 278 EPGGRLLVLDRADVEGDGAD-RF---FSTLLDLRMLT--FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSIL 351 (374)
T ss_dssp EEEEEEEEEECCH--------HH---HHHHHHHHHHH--HHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEE
T ss_pred CCCcEEEEEechhhcCCCCC-cc---hhhhcchHHHH--hCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEE
Confidence 99999999998 7654421 21 22456666665 567889999999999999999999998887665 677
Q ss_pred eecCc
Q 041308 227 SSKSN 231 (244)
Q Consensus 227 ~~~~~ 231 (244)
.+++.
T Consensus 352 ~~~~~ 356 (374)
T 1qzz_A 352 EFTAV 356 (374)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 76654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=224.04 Aligned_cols=216 Identities=16% Similarity=0.234 Sum_probs=176.3
Q ss_pred CCChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCC-cceEEEEcCCccHH
Q 041308 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKG-VKRLVDVGGSAGDC 79 (244)
Q Consensus 1 ~~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~-~~~vLDvG~G~G~~ 79 (244)
+..|.+|++++++|++.+|+.. +.+..+++....|..+|.....+ +..+++.++ +++ ..+|||||||+|.+
T Consensus 122 ~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~ 193 (352)
T 3mcz_A 122 WDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTY 193 (352)
T ss_dssp TTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHH
Confidence 4689999999999984443332 22456888899999999873333 346888888 777 89999999999999
Q ss_pred HHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC---CCc-ceEEEeccccccCCHHHHHHHHHH
Q 041308 80 LRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS---IHV-VDAIFMKWVLTTWTDDECKLIMEN 148 (244)
Q Consensus 80 ~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~---~p~-~D~v~~~~~lh~~~~~~~~~~l~~ 148 (244)
+..+++.+|+.+ ++++|++.+++.+++. ++++++.+|++++ .+. +|+|++.+++||++++++.++|++
T Consensus 194 ~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~ 272 (352)
T 3mcz_A 194 LAQVLRRHPQLT-GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGH 272 (352)
T ss_dssp HHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCe-EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHH
Confidence 999999999999 9999998888877752 5799999999886 444 599999999999999999999999
Q ss_pred HHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEee
Q 041308 149 YYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSS 228 (244)
Q Consensus 149 ~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~ 228 (244)
++++|+|||++++.|.+.++....+.. ...+++.++. ...++..++.++|+++++++||++++.. .++..++++
T Consensus 273 ~~~~L~pgG~l~i~e~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a 346 (352)
T 3mcz_A 273 AAGLVKPGGALLILTMTMNDDRVTPAL---SADFSLHMMV-NTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIG 346 (352)
T ss_dssp HHHTEEEEEEEEEEEECCCTTSSSSHH---HHHHHHHHHH-HSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEE
T ss_pred HHHHcCCCCEEEEEEeccCCCCCCCch---HHHhhHHHHh-hCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEE
Confidence 999999999999999988776433322 3466777765 3457889999999999999999999843 456777887
Q ss_pred cCc
Q 041308 229 KSN 231 (244)
Q Consensus 229 ~~~ 231 (244)
+|+
T Consensus 347 ~kp 349 (352)
T 3mcz_A 347 QRS 349 (352)
T ss_dssp ECC
T ss_pred ecC
Confidence 775
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-30 Score=220.96 Aligned_cols=209 Identities=16% Similarity=0.231 Sum_probs=175.1
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCch---HHHHHHHHHHcccc-cchHHHhccCCCCCCcceEEEEcCCcc
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPK---MNGLMRKAMSRVFV-PFMTSVLDGYDGFKGVKRLVDVGGSAG 77 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~---~~~~f~~~~~~~~~-~~~~~l~~~~~~~~~~~~vLDvG~G~G 77 (244)
..|.+|++++++|+ + |+++..+++ ..+.|...|..... ...+.+++.++ +++..+|||||||+|
T Consensus 135 ~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G 202 (359)
T 1x19_A 135 DFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIG 202 (359)
T ss_dssp HTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTC
T ss_pred HHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCccc
Confidence 47999999999998 3 566777888 99999999999888 77888999998 888899999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHH
Q 041308 78 DCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENY 149 (244)
Q Consensus 78 ~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~ 149 (244)
.++..+++++|+.+ ++++|++.+++.++++ .+++++.+|+++. ++.+|+|++.+++|++++++..++|+++
T Consensus 203 ~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~ 281 (359)
T 1x19_A 203 DISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKA 281 (359)
T ss_dssp HHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHH
Confidence 99999999999999 9999998899888742 5699999999885 6667999999999999998899999999
Q ss_pred HHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCcee----cCHHHHHHHHHhCCCCeEEEEEccceeEE
Q 041308 150 YKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH----KTEQEFKQLGFSTGFPHLRAFISIIFTLF 225 (244)
Q Consensus 150 ~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~~ 225 (244)
+++|||||++++.|...++. ..+... ..+ .++. ...++.. ++.++|.++++++||+++++.... ...+
T Consensus 282 ~~~L~pgG~l~i~e~~~~~~-~~~~~~---~~~--~~~~-~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~v 353 (359)
T 1x19_A 282 FDAMRSGGRLLILDMVIDDP-ENPNFD---YLS--HYIL-GAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLL 353 (359)
T ss_dssp HTTCCTTCEEEEEEECCCCT-TSCCHH---HHH--HHGG-GGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEE
T ss_pred HHhcCCCCEEEEEecccCCC-CCchHH---HHH--HHHH-hcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceE
Confidence 99999999999999887654 222211 112 2322 1234666 899999999999999999998877 6677
Q ss_pred EeecCc
Q 041308 226 LSSKSN 231 (244)
Q Consensus 226 ~~~~~~ 231 (244)
+.++|+
T Consensus 354 i~a~kp 359 (359)
T 1x19_A 354 VQAVKP 359 (359)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 777764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=218.07 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=182.7
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCC--CCcceEEEEcCCccHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGF--KGVKRLVDVGGSAGDC 79 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~--~~~~~vLDvG~G~G~~ 79 (244)
..|.+|++++++|+ ++++ + |+++..+++....|.+.|.......+..+++.++ + ++..+|||+|||+|.+
T Consensus 108 ~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~ 179 (335)
T 2r3s_A 108 NGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLF 179 (335)
T ss_dssp GGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHH
T ss_pred HHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHH
Confidence 47999999999999 6654 3 7778889999999999999888877788888887 7 7889999999999999
Q ss_pred HHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHH
Q 041308 80 LRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYY 150 (244)
Q Consensus 80 ~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~ 150 (244)
+..+++.+|+.+ ++++|++.+++.+++. ++++++.+|+++. ++. +|+|++.+++|++++++..+++++++
T Consensus 180 ~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~ 258 (335)
T 2r3s_A 180 GIAVAQHNPNAE-IFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIK 258 (335)
T ss_dssp HHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHH
Confidence 999999999999 9999998888888753 4799999999874 665 59999999999999998999999999
Q ss_pred HHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 151 KALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 151 ~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
++|+|||++++.|...++....+. ....++..++. ...++..++.++|.++++++||+.+++....++..++.++.
T Consensus 259 ~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 259 TALAVEGKVIVFDFIPNSDRITPP---DAAAFSLVMLA-TTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAY 334 (335)
T ss_dssp HHEEEEEEEEEEECCCCTTSSCSH---HHHHHHHHHHH-HSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEEE
T ss_pred HhCCCCcEEEEEeecCCCCcCCch---HHHHHHHHHHe-eCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEec
Confidence 999999999999998776533222 23456666665 33478899999999999999999999998887766666653
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=179.30 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=136.0
Q ss_pred CchHHHHHHHHHHcccc------cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHh
Q 041308 34 KPKMNGLMRKAMSRVFV------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAK 104 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~------~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~ 104 (244)
+...++.|++...+... ..+..+++.+ .+++.+|||+|||+|.++..+++.. |+++ ++++|+ +.|++.
T Consensus 35 ~~~va~~fdd~i~rsvP~Y~~~~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~-v~gvD~s~~ml~~ 111 (261)
T 4gek_A 35 DERVAEVFPDMIQRSVPGYSNIISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIER 111 (261)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCE-EEEEESCHHHHHH
T ss_pred CcchhhhhhhhHhhcCCCHHHHHHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCE-EEEEECCHHHHHH
Confidence 45667778776543221 1123344443 4678999999999999999999875 5678 999999 999998
Q ss_pred CCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc-hHH
Q 041308 105 APSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE-SQR 175 (244)
Q Consensus 105 a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~-~~~ 175 (244)
|+++ .+++++++|+.+. ++.+|+|++..++||+++++..++|++++++|||||+|++.|....+.... ...
T Consensus 112 A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~ 191 (261)
T 4gek_A 112 CRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL 191 (261)
T ss_dssp HHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHH
T ss_pred HHHHHHhhccCceEEEeecccccccccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHH
Confidence 8752 5899999999774 556799999999999999988899999999999999999999877655211 000
Q ss_pred hhhhhcccHhhhhhhc------------cCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 176 TRALLEGDIFVMTIYR------------AKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 176 ~~~~~~~d~~~~~~~~------------~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
.. ...+.....++. .--...+.+++.++|++|||+.+++..-..+..-++|.|+
T Consensus 192 ~~--~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~ 257 (261)
T 4gek_A 192 FN--MHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKA 257 (261)
T ss_dssp HH--HHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECC
T ss_pred HH--HHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEc
Confidence 00 000100000000 0012358899999999999999987544344444566664
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=162.96 Aligned_cols=193 Identities=11% Similarity=0.060 Sum_probs=137.7
Q ss_pred HHHHHHHHHHcccc---cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----
Q 041308 37 MNGLMRKAMSRVFV---PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---- 108 (244)
Q Consensus 37 ~~~~f~~~~~~~~~---~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---- 108 (244)
....|+........ ...+.+++.+....+..+|||+|||+|.++..+++.+|..+ ++++|+ +.+++.+++.
T Consensus 13 ~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~ 91 (234)
T 3dtn_A 13 VSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEAT-FTLVDMSEKMLEIAKNRFRGN 91 (234)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTCSC
T ss_pred HHHHHHHhHHHhCcCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHhhccC
Confidence 34455554433222 22344555554345668999999999999999999999888 999999 9999888753
Q ss_pred CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccH--
Q 041308 109 PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDI-- 184 (244)
Q Consensus 109 ~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~-- 184 (244)
.+++++.+|+.+. .+. .|+|++..++||+++++...++++++++|||||++++.+...++....... ....+...
T Consensus 92 ~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 170 (234)
T 3dtn_A 92 LKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVE 170 (234)
T ss_dssp TTEEEEESCTTTCCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHH
T ss_pred CCEEEEeCchhccCCCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHH
Confidence 4899999999775 443 599999999999999887789999999999999999999876654210000 00000000
Q ss_pred ------hhhh---hhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 185 ------FVMT---IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 185 ------~~~~---~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
.... ........++.+++.++|++|||+.+++.....+.+...+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 226 (234)
T 3dtn_A 171 NSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226 (234)
T ss_dssp TSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred hcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence 0000 0012234568899999999999999999888777777776664
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=150.33 Aligned_cols=164 Identities=15% Similarity=0.076 Sum_probs=117.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCCCCc--ceE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKSIHV--VDA 127 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~~p~--~D~ 127 (244)
...+++.+...++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++. ++++++.+|+.+..+. .|+
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~ 110 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADR-VTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDA 110 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeE
Confidence 3445555543556679999999999999999988 456 999999 9999988863 6899999999877444 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC------ceecCHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK------GKHKTEQE 201 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~t~~e 201 (244)
|++..++||+++++...++++++++|||||++++.+...+.......... ......... ...+ ....+.++
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRT-LQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEE-CTTSCEEEEECCCCCHHH
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeee-cCCcchhhHhhcCCCHHH
Confidence 99999999999987889999999999999999999876543211000000 000000000 0011 12358999
Q ss_pred HHHHHHhCCCCeEEEEEccce
Q 041308 202 FKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~ 222 (244)
+.++++++||++........+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~~~ 208 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHPGF 208 (218)
T ss_dssp HHHHHHHTTEEEEEEEEETTE
T ss_pred HHHHHHHCCCEEEeeeccccc
Confidence 999999999996665554433
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-22 Score=157.74 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=129.6
Q ss_pred HHHHHHHHHccccc----chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----
Q 041308 38 NGLMRKAMSRVFVP----FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---- 108 (244)
Q Consensus 38 ~~~f~~~~~~~~~~----~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---- 108 (244)
...|++.......+ ..+.+++.++ .++. +|||+|||+|.++..+++. +..+ ++++|+ +.+++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~-v~~~D~s~~~~~~a~~~~~~~ 89 (219)
T 3dlc_A 14 AKNMDEISKTLFAPIYPIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFS-IRALDFSKHMNEIALKNIADA 89 (219)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEE-EEEEESCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHhc
Confidence 34455554443333 3445566665 5554 9999999999999999998 7778 999999 9999888764
Q ss_pred ---CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc
Q 041308 109 ---PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG 182 (244)
Q Consensus 109 ---~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~ 182 (244)
++++++.+|+.+. ++. .|+|++..++||+++. ..++++++++|||||++++.+...+...............
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3dlc_A 90 NLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKN 167 (219)
T ss_dssp TCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHC
T ss_pred cccCceEEEEcCHHHCCCCcccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhH
Confidence 5899999999774 554 4999999999999765 5899999999999999999876543210000000000000
Q ss_pred cHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 183 DIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 183 d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
..+... .......++.+++.++++++||+.+++.....+..+++.++
T Consensus 168 ~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~ 214 (219)
T 3dlc_A 168 PDWKEF-NRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKT 214 (219)
T ss_dssp TTHHHH-HHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEEEEEEBCC
T ss_pred HHHHhh-hhhccccCCHHHHHHHHHHcCCCeEEEEecCCceEEEEecc
Confidence 000000 01123445789999999999999999988777766666554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=151.72 Aligned_cols=158 Identities=16% Similarity=0.063 Sum_probs=128.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ ..+..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.+++. +++++..+|+.+. ++
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 345666666 7778899999999999999999997 7778 999999 9999888763 5799999999764 44
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++..++||+++. ..+++++.++|+|||++++.++........+ .....++.++
T Consensus 104 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------~~~~~~~~~~ 163 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP------------------PPEEVYSEWE 163 (219)
T ss_dssp SSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------------------CGGGSCCHHH
T ss_pred CCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC------------------chhcccCHHH
Confidence 4 4999999999999865 5899999999999999999987655432111 1123467999
Q ss_pred HHHHHHhCCCCeEEEEEccceeEEEeecCch
Q 041308 202 FKQLGFSTGFPHLRAFISIIFTLFLSSKSNF 232 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~ 232 (244)
+.++++++||+++++.........++++|+.
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMIVK 194 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEECC-
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEecc
Confidence 9999999999999999888888888888754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-21 Score=153.18 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=120.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-CCc-ceEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-IHV-VDAI 128 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~p~-~D~v 128 (244)
..+++.+. ..+..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|+|
T Consensus 35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRT-VYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 34555554 456789999999999999999987 456 999999 9999888764 4899999999775 443 5999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc---cHhhhhhhccCceecCHHHHHHH
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG---DIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
++..++||+++++...+|++++++|||||++++.+....... ......... ...............+.+++.++
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD---AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH---HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChH---HHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHH
Confidence 999999999999877799999999999999999986554321 110000000 00000000111234488999999
Q ss_pred HHhCCCCeEEEEEccceeEEEeecC
Q 041308 206 GFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 206 l~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
++++||+++...... ...++.+++
T Consensus 188 l~~aGf~v~~~~~~~-~~w~~~~~~ 211 (220)
T 3hnr_A 188 FENNGFHVTFTRLNH-FVWVMEATK 211 (220)
T ss_dssp HHHTTEEEEEEECSS-SEEEEEEEE
T ss_pred HHHCCCEEEEeeccc-eEEEEeehh
Confidence 999999888776653 333444433
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=153.59 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=124.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~-- 124 (244)
.+.+++.++ .++..+|||+|||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAH-THGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTC
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCc
Confidence 456777776 7788899999999999999999987 567 999999 9999888764 6899999999874 544
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++||+++++...++++++++|||||++++.+...+... ++. ..+..... ..+...++.+++.+
T Consensus 121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~----~~~~~~~~---~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE--NWD----DEFKEYVK---QRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG--GCC----HHHHHHHH---HHTCCCCCHHHHHH
T ss_pred EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc--cch----HHHHHHHh---cCCCCCCCHHHHHH
Confidence 4999999999999878888999999999999999999988665421 110 01111111 22345678999999
Q ss_pred HHHhCCCCeEEEEEccc
Q 041308 205 LGFSTGFPHLRAFISII 221 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~ 221 (244)
+++++||+++++.....
T Consensus 192 ~l~~~Gf~~~~~~~~~~ 208 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLSD 208 (266)
T ss_dssp HHHHTTCEEEEEEECHH
T ss_pred HHHHcCCeEEEEEeCCH
Confidence 99999999999887654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=155.03 Aligned_cols=167 Identities=11% Similarity=0.124 Sum_probs=121.3
Q ss_pred HHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeE
Q 041308 41 MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTH 113 (244)
Q Consensus 41 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~ 113 (244)
|............+.+++.++ ..+..+|||||||+|.++..+++..+ + ++++|+ +.|++.+++. +++++
T Consensus 14 ~~~s~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~ 89 (260)
T 1vl5_A 14 YVTSQIHAKGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEY 89 (260)
T ss_dssp ---------CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred eecCccccCHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHHHhcCCCceEE
Confidence 333333444455666777776 67789999999999999999998875 6 999999 9999888753 67999
Q ss_pred EeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhh-hhh
Q 041308 114 IGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFV-MTI 189 (244)
Q Consensus 114 ~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~-~~~ 189 (244)
+.+|+.+. ++. .|+|++..++||+++. ..+|++++++|||||++++.+...+.. +.... +..... ..
T Consensus 90 ~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~---~~~~~---~~~~~~~~~- 160 (260)
T 1vl5_A 90 VQGDAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEN---DAFDV---FYNYVEKER- 160 (260)
T ss_dssp EECCC-CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSS---HHHHH---HHHHHHHHH-
T ss_pred EEecHHhCCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCC---HHHHH---HHHHHHHhc-
Confidence 99999774 554 4999999999999876 489999999999999999998765543 22111 111111 11
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.......++.++|.++|+++||+++.+....
T Consensus 161 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 161 DYSHHRAWKKSDWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp CTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred CccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 1123456789999999999999998887654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=151.92 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=122.8
Q ss_pred HHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC
Q 041308 38 NGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG 116 (244)
Q Consensus 38 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g 116 (244)
...|..........+.+.+...++.+++..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++.+
T Consensus 14 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~--~~~~~~ 88 (240)
T 3dli_A 14 YFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIE-SIGVDINEDMIKFCEGK--FNVVKS 88 (240)
T ss_dssp HHHHHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCC-EEEECSCHHHHHHHHTT--SEEECS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCc-EEEEECCHHHHHHHHhh--cceeec
Confidence 3444444443333444455555543566789999999999999999987 456 999999 9999998875 899999
Q ss_pred CCCC---CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 117 DMFK---SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 117 d~~~---~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
|+.+ +++. .|+|++..++||+++++...++++++++|||||++++....... . .. ..+. .. ..
T Consensus 89 d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~-~~----~~~~-~~--~~ 156 (240)
T 3dli_A 89 DAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS----L-YS----LINF-YI--DP 156 (240)
T ss_dssp CHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS----H-HH----HHHH-TT--ST
T ss_pred cHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch----h-HH----HHHH-hc--Cc
Confidence 9866 4444 49999999999999887789999999999999999997763221 1 10 1111 11 12
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.....++.+++.++++++||+++++....
T Consensus 157 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 157 THKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp TCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 33456789999999999999999887654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-21 Score=156.81 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=120.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-ceEEEecc-ccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV-VDAIFMKW-VLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~-~D~v~~~~-~lh~~~ 138 (244)
++..+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|+|++.. ++||++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--T-VEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--E-EEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--e-EEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4568999999999999999998754 5 999999 9999988864 6899999999775 433 49999998 999997
Q ss_pred H-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh---------h-----------hhcccHhhhhhhccC----
Q 041308 139 D-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR---------A-----------LLEGDIFVMTIYRAK---- 193 (244)
Q Consensus 139 ~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~---------~-----------~~~~d~~~~~~~~~~---- 193 (244)
+ ++...+|++++++|||||++++.+...++.....+... . ....+..+.. ...+
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 204 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLV-AGPDRGIT 204 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE-EETTTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEE-ecCCCcEE
Confidence 5 56678999999999999999997654443211000000 0 0000111100 0011
Q ss_pred -------ceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCchh
Q 041308 194 -------GKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFS 233 (244)
Q Consensus 194 -------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~ 233 (244)
.+.++.++|.++|++|||+++++........+.+++|++.
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a~ 251 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGAK 251 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC-
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCCC
Confidence 2346899999999999999999987777788888888754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=150.73 Aligned_cols=158 Identities=14% Similarity=0.069 Sum_probs=122.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ ..+..+|||||||+|.++..+++.. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVR-VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 455777776 7788999999999999999999876 567 999999 9999888753 4799999999774 54
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++..++||+++. ..+|++++++|||||++++.+........ .... ...+..... .+....++.++
T Consensus 127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~---~~~~~~~~~--~~~~~~~~~~~ 198 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVE-GAKK---EAVDAFRAG--GGVLSLGGIDE 198 (273)
T ss_dssp TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCC-HHHH---HHHHHHHHH--HTCCCCCCHHH
T ss_pred CCCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCC-hhHH---HHHHHHHhh--cCccCCCCHHH
Confidence 4 4999999999999876 58899999999999999999876554321 1110 111111111 23566789999
Q ss_pred HHHHHHhCCCCeEEEEEccc
Q 041308 202 FKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~ 221 (244)
+.++++++||+++++.....
T Consensus 199 ~~~~l~~aGf~~~~~~~~~~ 218 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDISA 218 (273)
T ss_dssp HHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHcCCeEEEEEECcH
Confidence 99999999999999888653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=149.29 Aligned_cols=164 Identities=11% Similarity=0.030 Sum_probs=122.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.++ .++..+|||||||+|.++..+++..+ .+ ++++|+ +.+++.+++. +++++..+|+.+ +|.
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~ 128 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDE 128 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CE-EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC
Confidence 345677776 77788999999999999999997764 47 999999 9999888753 589999999843 444
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCC-----chHHhhhhhcccHhhhhhhccCceecC
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN-----ESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
.|+|++..++||+++++...++++++++|||||++++.+...+.... .+.........+..... ..+++..++
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 207 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPS 207 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCC
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhe-eCCCCCCCC
Confidence 59999999999997666679999999999999999999876543210 00000000111111111 134567779
Q ss_pred HHHHHHHHHhCCCCeEEEEEccc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.+++.++++++||+++++.....
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~~~ 230 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSLQP 230 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHhCCcEEEEEEeCcH
Confidence 99999999999999999987643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=148.61 Aligned_cols=149 Identities=16% Similarity=0.203 Sum_probs=118.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV--V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~--~ 125 (244)
..+++.++ ..+..+|||||||+|.++..+++.+ ..+ ++++|. +.+++.+++. .+++++.+|+.+. ++. .
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YAT-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSE-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCE-EEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 45666665 6677899999999999999999887 446 999999 9999888753 5799999998764 443 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++..++||+++++...++++++++|||||++++.+....... ...+. ......++.++|.++
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~------~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK------EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET------TTTEEEBCHHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc------cCCcccCCHHHHHHH
Confidence 999999999999988888999999999999999999987543321 01110 123456789999999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
++++||+++++....
T Consensus 225 l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHCCCEEEEeeecC
Confidence 999999999987653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-20 Score=153.82 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=115.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
+++..+|||||||+|.++..+++.+|..+ ++++|+ +.+++.+++. +++++..+|+.+. ++. .|+|++..
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAE-ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF 113 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence 67789999999999999999999999888 999999 9999888753 6899999999764 443 49999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC---CCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD---SNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
++||+++.+ .++++++++|||||++++.+...... +..+... .............++..++.+++.++|+++
T Consensus 114 ~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 188 (276)
T 3mgg_A 114 VLEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI---EAWNCLIRVQAYMKGNSLVGRQIYPLLQES 188 (276)
T ss_dssp CGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHH---HHHHHHHHHHHHTTCCTTGGGGHHHHHHHT
T ss_pred hhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHC
Confidence 999998864 88999999999999999988643221 1111111 111111100012345556778999999999
Q ss_pred CCCeEEEEEcc
Q 041308 210 GFPHLRAFISI 220 (244)
Q Consensus 210 Gf~~~~~~~~~ 220 (244)
||+++++....
T Consensus 189 Gf~~v~~~~~~ 199 (276)
T 3mgg_A 189 GFEKIRVEPRM 199 (276)
T ss_dssp TCEEEEEEEEE
T ss_pred CCCeEEEeeEE
Confidence 99999987653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=148.02 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=119.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
....+++.++ .++..+|||+|||+|.++..+++..+ + ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 9 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 9 SLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred CcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCC
Confidence 3445666666 77889999999999999999998875 6 999999 9999888753 6799999999664 44
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh-hhhhhccCceecCHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF-VMTIYRAKGKHKTEQ 200 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~t~~ 200 (244)
. .|+|++..++||+++. ..++++++++|||||++++.+...+.. +.... +.... ... .......++.+
T Consensus 85 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~---~~~~~~~~~-~~~~~~~~~~~ 155 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED---PVLDE---FVNHLNRLR-DPSHVRESSLS 155 (239)
T ss_dssp TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS---HHHHH---HHHHHHHHH-CTTCCCCCBHH
T ss_pred CCcEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCC---hhHHH---HHHHHHHhc-cccccCCCCHH
Confidence 3 4999999999999875 588999999999999999998866543 21111 11111 111 01224567899
Q ss_pred HHHHHHHhCCCCeEEEEEcc
Q 041308 201 EFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 201 e~~~ll~~aGf~~~~~~~~~ 220 (244)
+|.++++++||+++++....
T Consensus 156 ~~~~ll~~aGf~~~~~~~~~ 175 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKWN 175 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEeec
Confidence 99999999999988887653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=150.79 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=124.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~- 124 (244)
+.+++.++ .++..+|||||||+|.++..+++.++ .+ ++++|+ +.+++.+++. +++++..+|+.+. +.
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 44777776 77889999999999999999999876 77 999999 9999888753 3799999999655 43
Q ss_pred ceEEEeccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh-------hcccHhhhhhh
Q 041308 125 VDAIFMKWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL-------LEGDIFVMTIY 190 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~-------~~~d~~~~~~~ 190 (244)
.|+|++..++||+++ +....+++++.++|||||++++.+...++.. ....... .+.+..... .
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE--EAQELGLTSPMSLLRFIKFILTE-I 214 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH--HHHHHTCCCCHHHHHHHHHHHHH-T
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCcc--chhhccccccccccchHHHHHHh-c
Confidence 599999999999954 5567899999999999999999988765431 0000000 000111111 1
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
.+++..++.+++.++++++||+++++.....+
T Consensus 215 ~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~ 246 (302)
T 3hem_A 215 FPGGRLPRISQVDYYSSNAGWKVERYHRIGAN 246 (302)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred CCCCCCCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence 45677889999999999999999999887644
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-19 Score=150.35 Aligned_cols=161 Identities=9% Similarity=-0.022 Sum_probs=121.8
Q ss_pred cccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCC
Q 041308 47 RVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDM 118 (244)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~ 118 (244)
.......+.+++.++.+++..+|||+|||+|.++..+++.+ +.+ ++++|+ +.+++.++++ ++++++.+|+
T Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 176 (312)
T 3vc1_A 99 RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176 (312)
T ss_dssp HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 33333345577776546778899999999999999999885 567 999999 9999888753 4799999999
Q ss_pred CCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCce
Q 041308 119 FKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK 195 (244)
Q Consensus 119 ~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 195 (244)
.+. ++. .|+|++..++||++ ...+|+++.++|||||++++.+....+...... ......... ....
T Consensus 177 ~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~ 245 (312)
T 3vc1_A 177 LDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAH---FECN 245 (312)
T ss_dssp TSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHH---HTCC
T ss_pred hcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhh---hcCC
Confidence 774 553 49999999999995 468999999999999999999876655321110 011111111 1123
Q ss_pred ecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 196 HKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 196 ~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.++.++|.++++++||+++++..+.
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999998875
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=146.52 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=117.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ .++..+|||||||+|.++..+++.. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. .+
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 101 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCe-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence 345666666 7778999999999999999999887 567 999999 9999888753 4799999999775 32
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
. .|+|++..++||+++. .++|++++++|||||++++.+.............. .+. . ......++.++|
T Consensus 102 ~~fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~--~~~-----~--~~~~~~~~~~~~ 170 (256)
T 1nkv_A 102 EKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ--ACG-----V--SSTSDFLTLPGL 170 (256)
T ss_dssp SCEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH--TTT-----C--SCGGGSCCHHHH
T ss_pred CCCCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHH--HHh-----c--ccccccCCHHHH
Confidence 2 4999999999999864 58899999999999999999876554422111100 000 0 112345789999
Q ss_pred HHHHHhCCCCeEEEEEc
Q 041308 203 KQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~ 219 (244)
.++++++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=143.84 Aligned_cols=145 Identities=15% Similarity=0.026 Sum_probs=115.1
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++. .|+|++..++||++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQ-IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCC-EEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 589999999999999999987 447 999999 9999988864 7899999999764 443 4999999999999876
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
+...+|++++++|||||++++.+...+... . ... .......++.+++.++++++||+++++....
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~-------~~~------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLE--P-------MYH------PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCE--E-------ECC------SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchh--h-------hhc------hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 778999999999999999999876443310 0 000 0123456789999999999999999998765
Q ss_pred c-eeEEEee
Q 041308 221 I-FTLFLSS 228 (244)
Q Consensus 221 ~-~~~~~~~ 228 (244)
. +...+..
T Consensus 184 ~~p~~~l~~ 192 (203)
T 3h2b_A 184 RFPHAYLTA 192 (203)
T ss_dssp TSSEEEEEE
T ss_pred CCcchhhhh
Confidence 4 4444433
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=149.79 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=118.2
Q ss_pred HHHhccC----CCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC
Q 041308 54 TSVLDGY----DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS 121 (244)
Q Consensus 54 ~~l~~~~----~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~ 121 (244)
+.+++.+ . +.+..+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+.
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 4466666 4 6778899999999999999999886 457 999999 9999888753 5799999999774
Q ss_pred -CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 122 -IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 122 -~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
++. .|+|++..++||+++. ..+|++++++|||||++++.+........... ....+. . .......+
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~---~---~~~~~~~~ 213 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILD---R---IKLHDMGS 213 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHH---H---HTCSSCCC
T ss_pred CCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchHH---HHHHHH---H---hcCCCCCC
Confidence 544 4999999999999884 68999999999999999999987654321110 011111 1 11123458
Q ss_pred HHHHHHHHHhCCCCeEEEEEcc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.+++.++++++||+++++....
T Consensus 214 ~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 214 LGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHHHCCCeEEEEEECc
Confidence 9999999999999999988764
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=143.54 Aligned_cols=139 Identities=16% Similarity=0.071 Sum_probs=110.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc--ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV--VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~~ 139 (244)
+++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++..++++..+|+.+..+. .|+|++..++||+++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFD-VDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCe-EEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 456789999999999999999987 456 999999 99999998766788889998654232 499999999999998
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC-CCeEEEEE
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG-FPHLRAFI 218 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~ 218 (244)
++...+|++++++|||||++++......... .+. .......++.++|.++++++| |+++++..
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEG-----------RDK-----LARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCE-----------ECT-----TSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCccc-----------ccc-----cchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 8888999999999999999999754332210 000 011123468999999999999 99999876
Q ss_pred cc
Q 041308 219 SI 220 (244)
Q Consensus 219 ~~ 220 (244)
..
T Consensus 182 ~~ 183 (211)
T 3e23_A 182 SE 183 (211)
T ss_dssp EE
T ss_pred cc
Confidence 53
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-19 Score=145.52 Aligned_cols=156 Identities=8% Similarity=0.009 Sum_probs=117.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v 128 (244)
.+.+++.++ .++..+|||||||+|.++..+++ ++.+ ++++|+ +.+++.+++..+++++.+|+.+. ++. .|+|
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLF-VYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCE-EEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCE-EEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence 444666665 66779999999999999999997 6677 999999 99999999888999999999764 443 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
++.+++||+++. ..++++++++|| ||++++.+...+... ..+.. ...... .. .......+.+++. ++++
T Consensus 99 ~~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~-~~~~~---~~~~~~-~~--~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 99 ISILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQ-RIWLY---DYFPFL-WE--DALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EEESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCC-CCGGG---GTCHHH-HH--HHHTSCCHHHHHH-HHHH
T ss_pred EEcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhH-HHHHH---HHHHHH-hh--hhhhhCCCHHHHH-HHHH
Confidence 999999999765 589999999999 999999887543221 11111 011100 10 1123445678889 9999
Q ss_pred CCCCeEEEEEcccee
Q 041308 209 TGFPHLRAFISIIFT 223 (244)
Q Consensus 209 aGf~~~~~~~~~~~~ 223 (244)
+||+.+++.....+.
T Consensus 168 aGF~~v~~~~~~~p~ 182 (261)
T 3ege_A 168 NTKRRVEAIPFLLPH 182 (261)
T ss_dssp HHCSEEEEEECCEET
T ss_pred cCCCceeEEEecCCC
Confidence 999999988875443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-19 Score=148.90 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=122.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.++ ..+..+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. +++++..+|+.+ +|.
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 154 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE 154 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCC
Confidence 345777776 7778899999999999999999886 457 999999 9999888753 569999999854 344
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch----HHh-hhhhcccHhhhhhhccCceecC
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES----QRT-RALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~~~~~~t 198 (244)
.|+|++..++||+++++...+++++.++|||||++++.+...+...... ... ......+..... ..+++..++
T Consensus 155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 233 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLPS 233 (318)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCCC
T ss_pred CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHh-cCCCCcCCC
Confidence 5999999999999876678999999999999999999988765421000 000 000011111111 134567789
Q ss_pred HHHHHHHHHhCCCCeEEEEEccc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.+++.++++++||+++++..+..
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~~~ 256 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSLRP 256 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEECHH
T ss_pred HHHHHHHHHhCCCEEEEEEecch
Confidence 99999999999999999877653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=141.95 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=110.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ceEEEecccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~ 136 (244)
++..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. ++. .|+|++.+++||
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 46689999999999999999987 456 999999 9999988865 7899999999764 443 499999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
+++. ..++++++++|+|||++++.+....... ... ....... .......++.+++.++++++||++++.
T Consensus 129 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~----~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKSDGYACIAILGPTAKP---REN----SYPRLYG--KDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGG---GGG----GGGGGGT--CCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchh---hhh----hhhhhcc--ccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 9775 4889999999999999999886433221 110 1111111 122345578999999999999999998
Q ss_pred EEc
Q 041308 217 FIS 219 (244)
Q Consensus 217 ~~~ 219 (244)
..+
T Consensus 198 ~~~ 200 (242)
T 3l8d_A 198 IGV 200 (242)
T ss_dssp EEE
T ss_pred ecc
Confidence 755
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=144.40 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=116.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
...+++.+...++..+|||+|||+|.++..+++..+. + ++++|+ +.+++.++++ .+++++.+|+.+. ++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-E-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 3445565543667789999999999999999999875 7 999999 9999887753 4599999999653 44
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++..++||++. ..++++++++|||||++++.+........... ..+.+... .....+.++
T Consensus 112 ~~~fD~v~~~~~l~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~ 178 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIGF---ERGMNEWSKYLKKGGFIAVSEASWFTSERPAE------IEDFWMDA----YPEISVIPT 178 (257)
T ss_dssp TTCEEEEEEESCSCCCCH---HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH------HHHHHHHH----CTTCCBHHH
T ss_pred CCCEEEEEecChHhhcCH---HHHHHHHHHHcCCCcEEEEEEeeccCCCChHH------HHHHHHHh----CCCCCCHHH
Confidence 3 499999999999943 47899999999999999999875443321111 11111111 123568999
Q ss_pred HHHHHHhCCCCeEEEEEccc
Q 041308 202 FKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~ 221 (244)
+.++++++||+++++...+.
T Consensus 179 ~~~~l~~aGf~~v~~~~~~~ 198 (257)
T 3f4k_A 179 CIDKMERAGYTPTAHFILPE 198 (257)
T ss_dssp HHHHHHHTTEEEEEEEECCG
T ss_pred HHHHHHHCCCeEEEEEECCh
Confidence 99999999999999877653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=148.92 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=115.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ce
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VD 126 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D 126 (244)
+++.+....+..+|||||||+|.++..+++.+|. .+ ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 4444422567799999999999999999999985 77 999999 9999887753 3899999999874 444 59
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC-----C---CCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL-----P---DDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~-----~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+|++..++||+++. ..++++++++|||||++++.+... . ++...+.......+...........+....+
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 99999999999876 489999999999999999988751 0 1111011000111111111110122334456
Q ss_pred HHHHHHHHHhCCCCeEEEEEcc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.+++.++|++|||+.+++....
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~~ 191 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVSD 191 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHcCCCeEEEEEcC
Confidence 6789999999999999885543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=143.58 Aligned_cols=172 Identities=12% Similarity=0.037 Sum_probs=116.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~ 124 (244)
+.+.+.+.++ +..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ .+++++.+|+.+. ++.
T Consensus 28 ~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 28 LEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--E-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED 101 (227)
T ss_dssp HHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT
T ss_pred HHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCC
Confidence 3444555443 368999999999999999998877 6 999999 9999888753 6899999999874 443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc---hHHhhhhhcccHhhh---------hh-
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE---SQRTRALLEGDIFVM---------TI- 189 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~---~~~~~~~~~~d~~~~---------~~- 189 (244)
.|+|++..++|+...++...++++++++|+|||++++.+...+..... ........+....+. ..
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFK 181 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEec
Confidence 499999999877777777899999999999999999987642211000 000000000000000 00
Q ss_pred -----hccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 190 -----YRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 190 -----~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
.......++ .++.++|+++||+.+++..+.....++...|
T Consensus 182 ~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 182 SEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp ----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred cchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 000011122 4899999999999999999875555555443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=144.85 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=112.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
.+..+|||||||+|.++..+++.. ..+ ++++|+ +.+++.++++ .+++++.+|+.+. .+. .|+|++..+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-FRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSE-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence 357899999999999999999876 446 999999 9999888753 2588999998654 443 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+||+++++...++++++++|||||++++.+...+.. . .++. ......++.+++.++++++||++
T Consensus 156 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~------~~~~~~~~~~~~~~~l~~aGf~~ 219 (241)
T 2ex4_A 156 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD------VDSSVCRDLDVVRRIICSAGLSL 219 (241)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET------TTTEEEEBHHHHHHHHHHTTCCE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc------cCCcccCCHHHHHHHHHHcCCeE
Confidence 999999888899999999999999999998765431 0 1110 12344568999999999999999
Q ss_pred EEEEEcc
Q 041308 214 LRAFISI 220 (244)
Q Consensus 214 ~~~~~~~ 220 (244)
+++....
T Consensus 220 ~~~~~~~ 226 (241)
T 2ex4_A 220 LAEERQE 226 (241)
T ss_dssp EEEEECC
T ss_pred EEeeecC
Confidence 9987654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=142.58 Aligned_cols=142 Identities=6% Similarity=-0.040 Sum_probs=107.9
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------CCeeEEe
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------------------PEVTHIG 115 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------~~i~~~~ 115 (244)
.+++.+. ..+..+|||+|||+|..+..++++. .+ ++++|+ +.|++.|+++ .+++++.
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~g--~~-V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQG--YH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHHC--CE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHCC--Ce-EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 3444444 5667899999999999999999874 46 999999 9999988642 4789999
Q ss_pred CCCCCC-CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 116 GDMFKS-IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 116 gd~~~~-~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
+|+++. .+ ..|+|++..++||+++++..+++++++++|||||+++++....+.... .
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~-------------------~ 149 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL-------------------E 149 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS-------------------S
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc-------------------C
Confidence 999875 33 259999999999999888888999999999999995544332221100 0
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
......+.+++.+++++ ||++..+....
T Consensus 150 ~~~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 150 GPPFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp SCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 00112578999999988 99988877654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=145.67 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=117.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~ 124 (244)
..+++.++..+++.+|||||||+|.++..+++. +..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (267)
T 3kkz_A 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQ-VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN 112 (267)
T ss_dssp HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC
Confidence 345555543567789999999999999999988 7778 999999 9999888753 5799999999764 443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++..++||+.. ..++++++++|||||++++.+........... ..+.+... .....+.+++
T Consensus 113 ~~fD~i~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~ 179 (267)
T 3kkz_A 113 EELDLIWSEGAIYNIGF---ERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMDA----YPEIDTIPNQ 179 (267)
T ss_dssp TCEEEEEESSCGGGTCH---HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHHH----CTTCEEHHHH
T ss_pred CCEEEEEEcCCceecCH---HHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHHh----CCCCCCHHHH
Confidence 499999999999943 57899999999999999999876543322111 11111111 1245678999
Q ss_pred HHHHHhCCCCeEEEEEccc
Q 041308 203 KQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~ 221 (244)
.++++++||+++++..++.
T Consensus 180 ~~~l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 180 VAKIHKAGYLPVATFILPE 198 (267)
T ss_dssp HHHHHHTTEEEEEEEECCG
T ss_pred HHHHHHCCCEEEEEEECCH
Confidence 9999999999999987653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=145.27 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=117.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-ceEEEe-ccccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV-VDAIFM-KWVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~-~D~v~~-~~~lh~~~ 138 (244)
.+..+|||+|||+|.++..+++.++ + ++++|+ +.+++.+++. ++++++.+|+.+. .+. .|+|++ ..++||++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--D-TAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--E-EEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcC
Confidence 4568999999999999999999886 6 999999 9999988764 6899999999764 433 499995 55999985
Q ss_pred H-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh--------------------hhhcccHhhhhhhccC----
Q 041308 139 D-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR--------------------ALLEGDIFVMTIYRAK---- 193 (244)
Q Consensus 139 ~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~~---- 193 (244)
+ ++...++++++++|+|||++++.+...++......... ........+.. ...+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTV-ADPGKGVR 194 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE-EETTTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEE-ecCCCcce
Confidence 4 56789999999999999999998765543311000000 00000111110 0001
Q ss_pred -------ceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 194 -------GKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 194 -------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
-+.++.++|+++|++|||++..+........+++++|+
T Consensus 195 ~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 195 HFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 13468999999999999988777666666777777764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=146.76 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCcceEEEEcCCc---cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC------------CC
Q 041308 64 KGVKRLVDVGGSA---GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS------------IH 123 (244)
Q Consensus 64 ~~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~------------~p 123 (244)
.+..+|||||||+ |.++..+.+.+|+.+ ++++|+ |.|++.+++. ++++++.+|+.++ ++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~-v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDAR-VVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCE-EEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 3458999999999 999888888889999 999999 9999988753 6899999999763 22
Q ss_pred --cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 --VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
..|+|++..++||+++++...+|++++++|+|||+|++.+...+. . ... ....+..... ......++.++
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~--~~~---~~~~~~~~~~--~~~~~~~s~~e 226 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L--PAQ---QKLARITREN--LGEGWARTPEE 226 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C--HHH---HHHHHHHHHH--HSCCCCBCHHH
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h--HHH---HHHHHHHHhc--CCCCccCCHHH
Confidence 359999999999999877789999999999999999999976532 1 111 1122222221 12356689999
Q ss_pred HHHHHHhCCCCeEE
Q 041308 202 FKQLGFSTGFPHLR 215 (244)
Q Consensus 202 ~~~ll~~aGf~~~~ 215 (244)
+.++| +||++++
T Consensus 227 i~~~l--~G~~l~~ 238 (274)
T 2qe6_A 227 IERQF--GDFELVE 238 (274)
T ss_dssp HHHTT--TTCEECT
T ss_pred HHHHh--CCCeEcc
Confidence 99999 6998775
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=139.84 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=116.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-CCCeeEEeCCCCCCCCc--ceEEEec
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-IPEVTHIGGDMFKSIHV--VDAIFMK 131 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-~~~i~~~~gd~~~~~p~--~D~v~~~ 131 (244)
+++.++ .++..+|||+|||+|.++..+++... + ++++|. +.+++.+++ .+++++..+| .+++. .|+|++.
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--K-LYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--E-EEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--e-EEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 444444 66778999999999999999998874 6 999999 999988876 4789999999 33443 5999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.++||+++. ..+++++.++|||||++++.+.........+ .....++.+++.++++ ||
T Consensus 83 ~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 83 NSFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGP------------------PLSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp SCSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSS------------------CGGGCCCHHHHHHHTT--TE
T ss_pred cchhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCc------------------hHhhhcCHHHHHHHHh--Cc
Confidence 999999765 5899999999999999999987655432111 1123368999999998 99
Q ss_pred CeEEEEEccceeEEEeecC
Q 041308 212 PHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ 230 (244)
+++++.........+++++
T Consensus 141 ~~~~~~~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLKR 159 (170)
T ss_dssp EEEEEECSSTTEEEEEEEE
T ss_pred EEEEccCCCCceEEEEEec
Confidence 9999999886555555554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-19 Score=143.61 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=113.3
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~- 124 (244)
..++.... +++ .+|||+|||+|.++..+++ +..+ ++++|+ +.+++.+++. .+++++.+|+.+..+.
T Consensus 57 ~~~~~~~~-~~~-~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 131 (235)
T 3lcc_A 57 VHLVDTSS-LPL-GRALVPGCGGGHDVVAMAS--PERF-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTE 131 (235)
T ss_dssp HHHHHTTC-SCC-EEEEEETCTTCHHHHHHCB--TTEE-EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSS
T ss_pred HHHHHhcC-CCC-CCEEEeCCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCC
Confidence 34444444 444 5999999999999999976 4567 999999 9999888753 4599999999886443
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++..++||+++++...++++++++|||||++++.+.........+ ...++.+++.
T Consensus 132 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 191 (235)
T 3lcc_A 132 LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP--------------------PYKVDVSTFE 191 (235)
T ss_dssp CEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS--------------------SCCCCHHHHH
T ss_pred CeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC--------------------CccCCHHHHH
Confidence 5999999999999977788999999999999999999876544321110 1125789999
Q ss_pred HHHHhCCCCeEEEEEccc
Q 041308 204 QLGFSTGFPHLRAFISII 221 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~~ 221 (244)
++++++||+++++.....
T Consensus 192 ~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 192 EVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp HHHGGGTEEEEEEEECTT
T ss_pred HHHHHcCCeEEEEEecCC
Confidence 999999999999987654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-19 Score=145.81 Aligned_cols=168 Identities=14% Similarity=0.037 Sum_probs=120.5
Q ss_pred cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-
Q 041308 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~- 124 (244)
.....+.+++.++ ..+..+|||||||+|.++..+++ +..+ ++++|+ +.|++.+++. +++++..+|+.+. ++.
T Consensus 42 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~ 117 (279)
T 3ccf_A 42 VWQYGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAE-VLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKP 117 (279)
T ss_dssp CSSSCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCE-EEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSC
T ss_pred HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCC
Confidence 3445566777776 66778999999999999999998 6677 999999 9999988764 7899999999764 433
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh--hhhccCceecCHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM--TIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~t~~e~ 202 (244)
.|+|++..++||+++. ..++++++++|||||++++........ ................ .........++.+++
T Consensus 118 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (279)
T 3ccf_A 118 LDAVFSNAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQALNPWYFPSIGEY 193 (279)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHH
T ss_pred cCEEEEcchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCcCceeCCCHHHH
Confidence 4999999999999875 488999999999999999976543221 1111110000000000 000011235689999
Q ss_pred HHHHHhCCCCeEEEEEccceeE
Q 041308 203 KQLGFSTGFPHLRAFISIIFTL 224 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~~~~ 224 (244)
.++|+++||+++++.....+..
T Consensus 194 ~~~l~~aGf~~~~~~~~~~~~~ 215 (279)
T 3ccf_A 194 VNILEKQGFDVTYAALFNRPTT 215 (279)
T ss_dssp HHHHHHHTEEEEEEEEEECCEE
T ss_pred HHHHHHcCCEEEEEEEeccccc
Confidence 9999999999998877655443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-19 Score=148.84 Aligned_cols=168 Identities=14% Similarity=0.049 Sum_probs=119.3
Q ss_pred CCCcceEEEEcCCccHHHHHHH-HHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIIL-QKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~ 131 (244)
.++..+|||||||+|.++..++ ...|+.+ ++++|+ +.+++.++++ .+++++.+|+.+. ++. .|+|++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 4667899999999999999986 5678888 999999 9999888753 3599999999775 443 4999999
Q ss_pred cccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCc--hHHh-hhh----hcccHhhhh-hhccCceecCHHHH
Q 041308 132 WVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNE--SQRT-RAL----LEGDIFVMT-IYRAKGKHKTEQEF 202 (244)
Q Consensus 132 ~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~--~~~~-~~~----~~~d~~~~~-~~~~~~~~~t~~e~ 202 (244)
.++||+++. ....++++++++|||||++++.+...+..... .|.. ... ......... ........++.+++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999999654 44568999999999999999988765443211 1100 000 000000000 00011244799999
Q ss_pred HHHHHhCCCCeEEEEEccc-eeEEEeecCc
Q 041308 203 KQLGFSTGFPHLRAFISII-FTLFLSSKSN 231 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~-~~~~~~~~~~ 231 (244)
.++++++||+++++..... ....++++|+
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 9999999999999986543 3445666665
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-19 Score=142.39 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=108.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCCCCc--ceEEEeccccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKSIHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~ 138 (244)
.+..+|||||||+|.++..+++.++ + ++++|+ +.+++.+++. .+++++.+|+.+..+. .|+|++.+++||++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhc
Confidence 3467999999999999999998876 5 999999 9999888764 2899999999776443 49999999999998
Q ss_pred HHHHHHHHHHHH-HHcCCCCEEEEecccCCCCCCchHHhhhhhccc----HhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 139 DDECKLIMENYY-KALLAGRKLIACEPVLPDDSNESQRTRALLEGD----IFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 139 ~~~~~~~l~~~~-~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+. ..+|++++ ++|||||++++.+...... ............ .............++.+++.++++++||++
T Consensus 118 ~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 118 DP--VALLKRINDDWLAEGGRLFLVCPNANAV--SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCH--HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred CH--HHHHHHHHHHhcCCCCEEEEEcCChHHH--HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence 76 58999999 9999999999987533211 000000000000 000000012345679999999999999999
Q ss_pred EEEEEc
Q 041308 214 LRAFIS 219 (244)
Q Consensus 214 ~~~~~~ 219 (244)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 998754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=150.25 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=113.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC--------------CCeeEEeCCCCC-------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI--------------PEVTHIGGDMFK------- 120 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~--------------~~i~~~~gd~~~------- 120 (244)
.+..+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++++ ++++++.+|+.+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGK-VIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCE-EEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 456899999999999999999986 7778 999999 9999988764 689999999976
Q ss_pred CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 121 SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 121 ~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+++. .|+|++..++||+++. ..+|++++++|||||++++.+...+.... ... ..+..... ...+..++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~-----~~~~~~~~--~~~~~~~~ 230 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLS-EAA-----QQDPILYG--ECLGGALY 230 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCC-HHH-----HHCHHHHH--TTCTTCCB
T ss_pred CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccC-HhH-----hhhHHHhh--cccccCCC
Confidence 4444 4999999999999875 58999999999999999999876554321 111 11111111 22345677
Q ss_pred HHHHHHHHHhCCCCeEEEEE
Q 041308 199 EQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~ 218 (244)
.++|.++|+++||+.+++..
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe
Confidence 89999999999999887654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=138.08 Aligned_cols=150 Identities=17% Similarity=0.086 Sum_probs=109.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCC-CCc--ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~-~p~--~D~v 128 (244)
++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++. .++++..+|+.+. ++. .|+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 46789999999999999999987 457 999999 9898887752 2589999999764 443 4999
Q ss_pred EeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh--h----h-------ccCc
Q 041308 129 FMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT--I----Y-------RAKG 194 (244)
Q Consensus 129 ~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~--~----~-------~~~~ 194 (244)
++..++||+++. +...++++++++|||||++++.+....... +.... .......... . . ....
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLYRK-RYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHHHH-HHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHHHH-HhhhhccchhhhcceEecccccCCcceee
Confidence 999999999754 466899999999999999999987654331 11110 0000110000 0 0 0012
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..++.++|.++++++||+++++...
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEec
Confidence 4579999999999999999998653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-19 Score=147.05 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=113.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC--Cc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI--HV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~--p~ 124 (244)
.+++.++ . +..+|||||||+|.++..+++. ..+ ++++|+ +.+++.+++. ++++++.+|+.+.. +.
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQ-VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 4555554 3 3579999999999999999987 457 999999 9999988853 67999999997652 33
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh------hhccCcee
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT------IYRAKGKH 196 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~ 196 (244)
.|+|++..++||+++. ..++++++++|||||++++.+...... ................ ........
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGL---LMHNMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHH---HHHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchH---HHHHHHhcCHHHHhhhccccccccCCCCCC
Confidence 4999999999999876 589999999999999999987643211 0000000000000000 00112355
Q ss_pred cCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 197 KTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 197 ~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
++.+++.++++++||+++++..+...
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~~~ 235 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVRVF 235 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred CCHHHHHHHHHHCCCceeeeeeEEEe
Confidence 78999999999999999999887543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=141.53 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=113.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--~D~v 128 (244)
...+++.++ ..+..+|||+|||+|.++..+++.+|..+ ++++|+ +.+++.+++. ++++++.+|+.+..+. .|+|
T Consensus 22 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 99 (259)
T 2p35_A 22 ARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNV-ITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLL 99 (259)
T ss_dssp HHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTS-EEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEE
Confidence 345666666 66778999999999999999999998888 999999 9999988764 7899999999764333 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccH--hhhhhh---ccCceecCHHHHH
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDI--FVMTIY---RAKGKHKTEQEFK 203 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~--~~~~~~---~~~~~~~t~~e~~ 203 (244)
++..++||+++. ..++++++++|||||++++........ +........... +..... ......++.++|.
T Consensus 100 ~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (259)
T 2p35_A 100 YANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYF 174 (259)
T ss_dssp EEESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHH
T ss_pred EEeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHH
Confidence 999999999764 588999999999999999987532211 111111011000 000000 0123457899999
Q ss_pred HHHHhCCCCeE
Q 041308 204 QLGFSTGFPHL 214 (244)
Q Consensus 204 ~ll~~aGf~~~ 214 (244)
++|+++||++.
T Consensus 175 ~~l~~aGf~v~ 185 (259)
T 2p35_A 175 NALSPKSSRVD 185 (259)
T ss_dssp HHHGGGEEEEE
T ss_pred HHHHhcCCceE
Confidence 99999999743
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=141.60 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=112.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ce
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D 126 (244)
..+.+.++ ..+..+|||+|||+|.++..+++..+. + ++++|+ +.+++.+++. .+++++.+|+.+. ++. .|
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 110 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-K-VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN 110 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-E-EEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence 34566665 556789999999999999999998664 6 999999 9999888754 6899999999664 443 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC------------CCCCchHHhhhhhcccH-----hhhhh
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP------------DDSNESQRTRALLEGDI-----FVMTI 189 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~------------~~~~~~~~~~~~~~~d~-----~~~~~ 189 (244)
+|++..++||+++. ..++++++++|||||++++...... .... .........++. ....
T Consensus 111 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 186 (253)
T 3g5l_A 111 VVLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGN-KLHWPVDRYFNESMRTSHFLG- 186 (253)
T ss_dssp EEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCC-EEEEEECCTTCCCEEEEEETT-
T ss_pred EEEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCc-eEEEEeccccccceEEEeecc-
Confidence 99999999999764 5899999999999999999643210 0000 000000000000 0000
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.......+|.++|.++|++|||+++++....
T Consensus 187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 187 EDVQKYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred ccCccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 0001122399999999999999999987654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=137.99 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=105.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCC-CC--cceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKS-IH--VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~-~p--~~D~ 127 (244)
..+..+|||+|||+|.++..+++..+..+ ++++|+ +.+++.++++ .+++++.+|+... .+ ..|+
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQ-ITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDA 105 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSE-EEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCE-EEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCE
Confidence 34568999999999999999999888778 999999 9999888753 2899999998544 33 2599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH----
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK---- 203 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~---- 203 (244)
|++..++||+++++..+++++++++|||||.+++..... +...+.. +...... .......++.+++.
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-------~~~~~~~-~~~~~~~-~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIE-------YNVKFAN-LPAGKLR-HKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHH-------HHHHTC-------------CCSCBCHHHHHHHHH
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcc-------cchhhcc-ccccccc-ccccccccCHHHHHHHHH
Confidence 999999999999888899999999999999777755411 1000000 0000000 01223346888888
Q ss_pred HHHHhCCCCeEEE
Q 041308 204 QLGFSTGFPHLRA 216 (244)
Q Consensus 204 ~ll~~aGf~~~~~ 216 (244)
++++++||++...
T Consensus 177 ~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 177 KITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHSSEEEEEC
T ss_pred HHHHHcCceEEEE
Confidence 9999999987554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=140.75 Aligned_cols=149 Identities=10% Similarity=-0.012 Sum_probs=106.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
.++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++. .|+|++..+
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYR-YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL 113 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCE-EEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence 567789999999999999999986 356 999999 9999887653 6899999999664 444 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhcc---CceecCHHHHHHHHHhCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA---KGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~t~~e~~~ll~~aG 210 (244)
+||+++. ..++++++++|||||++++. ...++ ..+.......+....... ... ....++.+++.++++++|
T Consensus 114 l~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~G 187 (263)
T 2yqz_A 114 WHLVPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEE-GFPVERGLHAKRLKEVEEALRRLG 187 (263)
T ss_dssp GGGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHH-TCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHh-CCCcccccccCCHHHHHHHHHHcC
Confidence 9999864 58999999999999999988 22111 112000000111111110 001 123467889999999999
Q ss_pred CCeEEEEEcc
Q 041308 211 FPHLRAFISI 220 (244)
Q Consensus 211 f~~~~~~~~~ 220 (244)
|+++.+....
T Consensus 188 f~~~~~~~~~ 197 (263)
T 2yqz_A 188 LKPRTREVAR 197 (263)
T ss_dssp CCCEEEEEEE
T ss_pred CCcceEEEee
Confidence 9988775544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=144.83 Aligned_cols=177 Identities=10% Similarity=0.046 Sum_probs=116.0
Q ss_pred HHHHHHHHcc-cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------
Q 041308 39 GLMRKAMSRV-FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------- 108 (244)
Q Consensus 39 ~~f~~~~~~~-~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------- 108 (244)
..|+..+... .......+++.++ .. ..+|||||||+|.++..+++. ..+ ++++|+ +.+++.++++
T Consensus 57 ~~y~~~~~~~~~~~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~ 131 (299)
T 3g2m_A 57 DTYRDLIQDADGTSEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWE-VTALELSTSVLAAFRKRLAEAPADV 131 (299)
T ss_dssp ---------CCCHHHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCC-EEEEESCHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHhcccCccHHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHhhccccc
Confidence 3455554432 2334555666665 33 349999999999999999987 457 999999 9999988863
Q ss_pred -CCeeEEeCCCCCC-CCc-ceEEEe-ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC----Cc--hHHhhh
Q 041308 109 -PEVTHIGGDMFKS-IHV-VDAIFM-KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS----NE--SQRTRA 178 (244)
Q Consensus 109 -~~i~~~~gd~~~~-~p~-~D~v~~-~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~----~~--~~~~~~ 178 (244)
.+++++.+|+.+. ++. .|+|++ ..++|++++++...+|++++++|||||+|++.....+... .. .+....
T Consensus 132 ~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (299)
T 3g2m_A 132 RDRCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRS 211 (299)
T ss_dssp HTTEEEEECBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC--------
T ss_pred ccceEEEeCchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCC
Confidence 5799999999874 444 498885 4778888888888999999999999999999765432110 00 000000
Q ss_pred hh-------------cccHhhhh---------hhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 179 LL-------------EGDIFVMT---------IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 179 ~~-------------~~d~~~~~---------~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.. ...+.... ......+.++.+++.++|++|||+++++..+.
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 212 GRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp -----CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 00 00000000 00011235699999999999999999998875
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-18 Score=138.36 Aligned_cols=179 Identities=14% Similarity=0.029 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHcccc----cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-
Q 041308 35 PKMNGLMRKAMSRVFV----PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI- 108 (244)
Q Consensus 35 ~~~~~~f~~~~~~~~~----~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~- 108 (244)
++.+..|+..+..... ...+.+.+.++ ..+..+|||+|||+|.++..+++... .+ ++++|+ +.+++.+++.
T Consensus 10 ~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~-v~~vD~s~~~~~~a~~~~ 86 (243)
T 3bkw_A 10 PDFFAGYSQLGRSIEGLDGAAEWPALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SY-VLGLDLSEKMLARARAAG 86 (243)
T ss_dssp ---------------CGGGCTTHHHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCccHHHHHhHHHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-Ce-EEEEcCCHHHHHHHHHhc
Confidence 3344555554433221 12234555555 55678999999999999999998743 26 999999 9999888764
Q ss_pred --CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC--CCCCchHHhh----
Q 041308 109 --PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP--DDSNESQRTR---- 177 (244)
Q Consensus 109 --~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~--~~~~~~~~~~---- 177 (244)
.+++++.+|+.+. ++. .|+|++..++||+++. ..++++++++|+|||++++...... ......+...
T Consensus 87 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (243)
T 3bkw_A 87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGR 164 (243)
T ss_dssp CSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSC
T ss_pred ccCCceEEEcChhhccCCCCCceEEEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCc
Confidence 4799999999764 443 4999999999999864 5899999999999999999764211 0000000000
Q ss_pred ----hhhcc-----cHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 178 ----ALLEG-----DIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 178 ----~~~~~-----d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..... ...... .......++.++|.++|+++||+++++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 165 RTWPIDRYLVEGPRKTDWLA-KGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EEEEECCTTCCEEECTTHHH-HSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEeecccccccceeeeecc-CceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 00000 000000 011233468999999999999999998765
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=139.22 Aligned_cols=150 Identities=12% Similarity=0.004 Sum_probs=110.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc-------ceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV-------VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~-------~D~v~~ 130 (244)
..+..+|||+|||+|.++..+++.++ + ++++|+ +.+++.++++ .+++++.+|+.+. .+. .|+|++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--R-VIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--C-EEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--C-EEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEE
Confidence 45678999999999999999999987 6 999999 9999888753 5899999999874 221 489999
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhc---c--cHhhhhhhccCceecCHHHHHHH
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLE---G--DIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~---~--d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
..++||+++++...++++++++|||||++++.+...++. ......... . ..............++.+++.++
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI---DFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELY 207 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH---HHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHH
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc---HHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHH
Confidence 999999998778899999999999999999999854432 111000000 0 00000000111234689999999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
| +||+++....+.
T Consensus 208 ~--aGf~~~~~~~~~ 220 (245)
T 3ggd_A 208 F--PDFEILSQGEGL 220 (245)
T ss_dssp C--TTEEEEEEECCB
T ss_pred h--CCCEEEeccccc
Confidence 9 999999876654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=133.27 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=111.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~- 124 (244)
+.+++.++ ..+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. +++++..+|+.+. ++.
T Consensus 22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 34556665 556689999999999999999987 457 999999 9999888753 4799999998764 433
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++||+++++...+++++.++|+|||++++++.........+ ......++.+++++
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC-----------------SCCSCCBCTTHHHH
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC-----------------CCCCCccCHHHHHH
Confidence 4999999999999977778999999999999999999887654331100 11233467889999
Q ss_pred HHHhCCCCeEEEEEc
Q 041308 205 LGFSTGFPHLRAFIS 219 (244)
Q Consensus 205 ll~~aGf~~~~~~~~ 219 (244)
++++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9976 999887644
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=141.88 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=84.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
...+|||||||+|.++..+++.+. + ++++|+ +.|++.|++.++++++.+|+.+. ++. .|+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~-v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--R-VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--E-EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--E-EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 457999999999999999998763 5 999999 99999999999999999999764 665 3999999999988754
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+++++++|+|||||+|++.....+
T Consensus 116 ---~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 ---RFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp ---HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ---HHHHHHHHHcCCCCEEEEEECCCC
Confidence 689999999999999999876543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=139.81 Aligned_cols=166 Identities=13% Similarity=-0.001 Sum_probs=116.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-----CC-c-ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-----IH-V-VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-----~p-~-~D 126 (244)
.+++.+. ..+..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.+++..++.+..+|+.+. .+ . .|
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCE-EEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3555554 445699999999999999999987 457 999999 99999998888888998887542 22 2 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh----hccCceecCHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----YRAKGKHKTEQEF 202 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~t~~e~ 202 (244)
+|++..++| ..+. ..++++++++|||||++++.+............ ..+........ .......++.++|
T Consensus 119 ~v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3e8s_A 119 LICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASW 192 (227)
T ss_dssp EEEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred EEEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHH
Confidence 999999999 4443 589999999999999999988754333211000 00111000000 0011245699999
Q ss_pred HHHHHhCCCCeEEEEEccc------eeEEEeecC
Q 041308 203 KQLGFSTGFPHLRAFISII------FTLFLSSKS 230 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~------~~~~~~~~~ 230 (244)
.++|+++||+++++..... ...+++++|
T Consensus 193 ~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp HHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred HHHHHHcCCeEEEEecCCCCCCCCceeEEEEeec
Confidence 9999999999999876321 145666665
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=144.39 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=106.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------------------------------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------------------------- 108 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------------------------- 108 (244)
.+..+|||||||+|.++..+++.++..+ ++++|+ +.+++.|+++
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~-v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSR-MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSE-EEEEESCHHHHHHHHHTC---------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 3568999999999999999999998888 999999 9999888653
Q ss_pred ------------------------------CCeeEEeCCCCCCC------Cc--ceEEEeccccccC----CHHHHHHHH
Q 041308 109 ------------------------------PEVTHIGGDMFKSI------HV--VDAIFMKWVLTTW----TDDECKLIM 146 (244)
Q Consensus 109 ------------------------------~~i~~~~gd~~~~~------p~--~D~v~~~~~lh~~----~~~~~~~~l 146 (244)
.+++|..+|+.... +. .|+|++..+++|+ .++...+++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 37999999998642 22 4999999999776 566788999
Q ss_pred HHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh--CCCCeEEEEEc
Q 041308 147 ENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS--TGFPHLRAFIS 219 (244)
Q Consensus 147 ~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 219 (244)
++++++|+|||+|++...... .+............ ........++++.++|.+ +||+.+++...
T Consensus 204 ~~~~~~LkpGG~lil~~~~~~------~y~~~~~~~~~~~~---~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQPWS------SYGKRKTLTETIYK---NYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHEEEEEEEEEECCCHH------HHHTTTTSCHHHHH---HHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHhCCCcEEEEecCCch------hhhhhhcccHHHHh---hhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 999999999999998532111 01010011111000 111233457899999999 99998887544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=136.83 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=105.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCC-CCc--ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~-~p~--~D~v 128 (244)
.+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.++++ .+++++.+|+... .+. .|+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQ-ITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCE-EEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 4468999999999999999999888778 999999 9999988763 1899999999544 322 5999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH----H
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK----Q 204 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~----~ 204 (244)
++..++||+++++..+++++++++|||||.+++......... +.. ....... +......++.+++. +
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~-------~~~-~~~~~~~-~~~~~~~~~~~~l~~~~~~ 177 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFH-------YGN-LFEGNLR-HRDHRFEWTRKEFQTWAVK 177 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGC-------CCC-T-----G-GGCCTTSBCHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhh-------hcc-cCccccc-ccCceeeecHHHHHHHHHH
Confidence 999999999998888999999999999997766543211000 000 0000000 01223346888888 8
Q ss_pred HHHhCCCCeEEE
Q 041308 205 LGFSTGFPHLRA 216 (244)
Q Consensus 205 ll~~aGf~~~~~ 216 (244)
+++++||++...
T Consensus 178 l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 178 VAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHCCcEEEEE
Confidence 899999976554
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-18 Score=137.46 Aligned_cols=164 Identities=12% Similarity=0.003 Sum_probs=112.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ceEEEecc-ccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VDAIFMKW-VLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D~v~~~~-~lh 135 (244)
+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.+++. .+++++.+|+.+. ++. .|+|++.. ++|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--Cc-EEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCcccc
Confidence 56899999999999999999874 46 999999 9999988764 2799999998764 443 49999998 999
Q ss_pred cCC-HHHHHHHHHHHHHHcCCCCEEEEecccC-------CCCCCchHHh----hhhh-------cccHhhhhh-------
Q 041308 136 TWT-DDECKLIMENYYKALLAGRKLIACEPVL-------PDDSNESQRT----RALL-------EGDIFVMTI------- 189 (244)
Q Consensus 136 ~~~-~~~~~~~l~~~~~~L~pgG~lii~d~~~-------~~~~~~~~~~----~~~~-------~~d~~~~~~------- 189 (244)
|++ +++...+|++++++|+|||++++.-... +......... .+.. .....+...
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 994 4567899999999999999999732210 0000000000 0000 000000000
Q ss_pred --hccCceecCHHHHHHHHHhCCCCeEEEEEc--------cceeEEEeecCc
Q 041308 190 --YRAKGKHKTEQEFKQLGFSTGFPHLRAFIS--------IIFTLFLSSKSN 231 (244)
Q Consensus 190 --~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~~~~~~~~ 231 (244)
.....+.++.++|.++|+++||+++++... .....+++++|+
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 000124569999999999999999998754 234557777764
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=135.31 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=115.1
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM 118 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~ 118 (244)
.|++....+.....+.+++.++ .+..+|||+|||+|.++..+++. + .+ ++++|. +.+++.+++.. .++..+|+
T Consensus 9 ~y~~~~~~~~~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~-~~~~D~~~~~~~~~~~~~-~~~~~~d~ 82 (230)
T 3cc8_A 9 LYEEKSGHYYNAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TR-VSGIEAFPEAAEQAKEKL-DHVVLGDI 82 (230)
T ss_dssp -----------CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CE-EEEEESSHHHHHHHHTTS-SEEEESCT
T ss_pred hhhccchhHHHHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-Ce-EEEEeCCHHHHHHHHHhC-CcEEEcch
Confidence 3444444444555566777665 56689999999999999999988 4 67 999999 99999888643 37888998
Q ss_pred CCC---CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhh-hhcccH---hhhhh
Q 041308 119 FKS---IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA-LLEGDI---FVMTI 189 (244)
Q Consensus 119 ~~~---~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~-~~~~d~---~~~~~ 189 (244)
.+. ++. .|+|++..++||+++. ..++++++++|+|||++++........ ...... ...... ....
T Consensus 83 ~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 156 (230)
T 3cc8_A 83 ETMDMPYEEEQFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLD- 156 (230)
T ss_dssp TTCCCCSCTTCEEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTB-
T ss_pred hhcCCCCCCCccCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCC-
Confidence 752 333 4999999999999876 489999999999999999987533211 000000 000000 0000
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
......++.++|.++++++||+++++......
T Consensus 157 -~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 188 (230)
T 3cc8_A 157 -KTHIRFFTFNEMLRMFLKAGYSISKVDRVYVD 188 (230)
T ss_dssp -TTCCCCCCHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred -cceEEEecHHHHHHHHHHcCCeEEEEEecccC
Confidence 11235578999999999999999998876544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=138.01 Aligned_cols=163 Identities=9% Similarity=0.046 Sum_probs=114.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hH------HHHhCCCC-------CCeeEEeCC-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PE------VVAKAPSI-------PEVTHIGGD- 117 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~------~i~~a~~~-------~~i~~~~gd- 117 (244)
..+++.++ .++..+|||||||+|.++..+++.+ |+.+ ++++|+ +. +++.++++ +++++..+|
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~-v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGH-VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCE-EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34666666 6778999999999999999999986 7778 999999 65 77777643 579999998
Q ss_pred CCCC-C--Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh--
Q 041308 118 MFKS-I--HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY-- 190 (244)
Q Consensus 118 ~~~~-~--p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-- 190 (244)
+... + +. .|+|++..++||+++.+ .+++.++++++|||++++.+...+.......................
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPS 188 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccc
Confidence 5432 2 33 49999999999999875 47777777777899999999876654211110000000000000000
Q ss_pred -ccC-ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 191 -RAK-GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 191 -~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+ ...++.+++.++++++||+++++..+.
T Consensus 189 ~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 189 DVANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp TTCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred ccccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 011 245799999999999999999887763
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=130.29 Aligned_cols=132 Identities=20% Similarity=0.172 Sum_probs=108.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEE
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIF 129 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~ 129 (244)
.+++.+ .++..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. ++++++.+|+.+. ++. .|+|+
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHD-VLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCc-EEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEE
Confidence 355554 356789999999999999999987 456 999999 9999888764 6799999999874 543 49999
Q ss_pred ec-cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 130 MK-WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 130 ~~-~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
+. .++||+++++...+++++.++|+|||++++..... ..++.+++.+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~----------------------------~~~~~~~~~~~l~~ 164 (195)
T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG----------------------------RGWVFGDFLEVAER 164 (195)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT----------------------------SSCCHHHHHHHHHH
T ss_pred ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC----------------------------CCcCHHHHHHHHHH
Confidence 98 89999988888899999999999999999854311 11468899999999
Q ss_pred CCCCeEEEEEc
Q 041308 209 TGFPHLRAFIS 219 (244)
Q Consensus 209 aGf~~~~~~~~ 219 (244)
+||++++....
T Consensus 165 ~Gf~~~~~~~~ 175 (195)
T 3cgg_A 165 VGLELENAFES 175 (195)
T ss_dssp HTEEEEEEESS
T ss_pred cCCEEeeeecc
Confidence 99999988654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=142.63 Aligned_cols=152 Identities=11% Similarity=0.011 Sum_probs=107.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------------------------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------------------------------- 108 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------------------------------- 108 (244)
..++.+|||||||+|.++..++.... .+ ++++|. +.|++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~-v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cc-eeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 45668999999999988776655432 25 999999 9999976631
Q ss_pred --CCee-EEeCCCCCC--C-----CcceEEEeccccccCC--HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh
Q 041308 109 --PEVT-HIGGDMFKS--I-----HVVDAIFMKWVLTTWT--DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176 (244)
Q Consensus 109 --~~i~-~~~gd~~~~--~-----p~~D~v~~~~~lh~~~--~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~ 176 (244)
.++. ++.+|+.+. + +..|+|++..++||+. .++..+++++++++|||||+|++.+...... .
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~- 204 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y- 204 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E-
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c-
Confidence 1233 889999874 2 2359999999999853 3556789999999999999999987532211 0
Q ss_pred hhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc----------ceeEEEeecCc
Q 041308 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI----------IFTLFLSSKSN 231 (244)
Q Consensus 177 ~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~~~~~~~~ 231 (244)
... . .......++.+++.++|+++||+++++.... ....+++++|+
T Consensus 205 ----~~g----~-~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 205 ----MVG----K-REFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp ----EET----T-EEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ----eeC----C-eEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 000 0 0111234589999999999999999987653 14556677764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=134.96 Aligned_cols=101 Identities=25% Similarity=0.273 Sum_probs=83.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~ 125 (244)
+.+.+.+ ++..+|||+|||+|.++..+++. .+ ++++|+ +.+++.+++. .++++..+|+.+. .+. .
T Consensus 25 ~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~---~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 97 (243)
T 3d2l_A 25 AWVLEQV---EPGKRIADIGCGTGTATLLLADH---YE-VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPV 97 (243)
T ss_dssp HHHHHHS---CTTCEEEEESCTTCHHHHHHTTT---SE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCE
T ss_pred HHHHHHc---CCCCeEEEecCCCCHHHHHHhhC---Ce-EEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCc
Confidence 3344443 34589999999999999999876 56 999999 9999988753 5799999998764 444 4
Q ss_pred eEEEecc-ccccC-CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 126 DAIFMKW-VLTTW-TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 126 D~v~~~~-~lh~~-~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
|+|++.. ++||+ +.++...++++++++|+|||++++
T Consensus 98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 98 DAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999986 99998 556678899999999999999997
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=137.66 Aligned_cols=144 Identities=14% Similarity=0.027 Sum_probs=96.6
Q ss_pred CCcceEEEEcCCccHHHHH----HHHHcCCCC-eEEEeec-hHHHHhCCCC-------CCeeE--EeCCCCCC-------
Q 041308 64 KGVKRLVDVGGSAGDCLRI----ILQKHCFIC-EGINFDL-PEVVAKAPSI-------PEVTH--IGGDMFKS------- 121 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~----l~~~~p~~~-~~~~~D~-~~~i~~a~~~-------~~i~~--~~gd~~~~------- 121 (244)
.+..+|||||||+|.++.. ++.++|+.+ .++++|. +.|++.+++. +++.+ ..++..+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4567999999999986654 445567775 0399999 9999877642 34444 44554321
Q ss_pred CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 122 IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 122 ~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
++. .|+|++.+++||+++. .++|++++++|||||++++..... . ..+...+ ...............++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~--~--~~~~~~~---~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSG--S--SGWDKLW---KKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECT--T--SHHHHHH---HHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecC--C--ccHHHHH---HHHHHhccCCCcccCCCH
Confidence 123 5999999999999986 478999999999999999986432 1 1221111 010000000011345789
Q ss_pred HHHHHHHHhCCCCeEEE
Q 041308 200 QEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~ 216 (244)
++|.++|+++||+++..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=136.06 Aligned_cols=153 Identities=10% Similarity=-0.020 Sum_probs=112.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---C-----------------------------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---P----------------------------- 109 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~----------------------------- 109 (244)
..++.+|||+|||+|.++..+++..+ .+ ++++|. +.+++.+++. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TE-IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-Ce-EEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 35568999999999999999887765 46 999999 9999888642 1
Q ss_pred ---Ce-eEEeCCCCCC--CCc-----ceEEEeccccccCCH--HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh
Q 041308 110 ---EV-THIGGDMFKS--IHV-----VDAIFMKWVLTTWTD--DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176 (244)
Q Consensus 110 ---~i-~~~~gd~~~~--~p~-----~D~v~~~~~lh~~~~--~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~ 176 (244)
++ ++..+|+.+. ++. .|+|++..++|++++ ++...++++++++|||||++++.+......
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~------- 204 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY------- 204 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-------
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-------
Confidence 17 8999999774 222 499999999995543 356789999999999999999988532210
Q ss_pred hhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccc----------eeEEEeecCch
Q 041308 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII----------FTLFLSSKSNF 232 (244)
Q Consensus 177 ~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~----------~~~~~~~~~~~ 232 (244)
+... . ........+.+++.++|+++||+++++..... ...+++++|+.
T Consensus 205 -----~~~~--~-~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 262 (265)
T 2i62_A 205 -----YMIG--E-QKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPG 262 (265)
T ss_dssp -----EEET--T-EEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC
T ss_pred -----EEcC--C-ccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccc
Confidence 0000 0 01112345789999999999999999887542 45577777753
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=132.48 Aligned_cols=152 Identities=10% Similarity=-0.055 Sum_probs=108.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
..+..+|||+|||+|.++..++.. ++.+ ++++|. +.+++.+++. .++++..+|+.+. ++. .|+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYK-TYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCE-EEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcCh
Confidence 345689999999999985555443 4567 999999 9999888753 6799999999764 443 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+||++.++..+++++++++|||||++++.+...++.............+...... ....+..++.+++.+++.++||..
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERG-EKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-C-CCEEEEEECHHHHHHTTTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCC-CceeEEecCHHHHHHHHhhcCcee
Confidence 9999877788999999999999999999887655432100000000000000000 011235679999999999999987
Q ss_pred EEEE
Q 041308 214 LRAF 217 (244)
Q Consensus 214 ~~~~ 217 (244)
.+..
T Consensus 178 ~~~~ 181 (209)
T 2p8j_A 178 KEDR 181 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 7653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-17 Score=135.72 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=96.8
Q ss_pred HHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC--------
Q 041308 38 NGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPS-------- 107 (244)
Q Consensus 38 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~-------- 107 (244)
...|++....+...+.+.+..... ++..+|||||||+|.++..+++.+ +..+ ++++|+ +.+++.+++
T Consensus 11 ~~~y~~~rp~y~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~ 87 (299)
T 3g5t_A 11 SERYSSSRPSYPSDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQELKPFEQ-IIGSDLSATMIKTAEVIKEGSPDT 87 (299)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHSSCCSE-EEEEESCHHHHHHHHHHHHHCC-C
T ss_pred hHHHhhcCCCCCHHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHhccCC
Confidence 345666555555555555555433 567899999999999999999986 7778 999999 999998875
Q ss_pred CCCeeEEeCCCCCC-CCc--------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 108 IPEVTHIGGDMFKS-IHV--------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 108 ~~~i~~~~gd~~~~-~p~--------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..+++++.+|+.+. ++. .|+|++..++||+ + ...++++++++|||||++++.+.
T Consensus 88 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp CTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEec
Confidence 36899999999774 333 4999999999999 3 35899999999999999999554
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=132.64 Aligned_cols=133 Identities=7% Similarity=-0.078 Sum_probs=103.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------------------CCCeeEEeCCCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------------------IPEVTHIGGDMF 119 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------------------~~~i~~~~gd~~ 119 (244)
.+..+|||+|||+|..+..|++.. .+ ++++|+ +.|++.|++ ..+++++++|++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G--~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRG--HT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT--CE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 456899999999999999999874 46 999999 999988742 157999999998
Q ss_pred CC-CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCce
Q 041308 120 KS-IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK 195 (244)
Q Consensus 120 ~~-~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 195 (244)
+. .+ ..|+|+...++|++++++...++++++++|||||+++++....+.... .....
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~-------------------~g~~~ 204 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH-------------------AGPPF 204 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC-------------------CCSSC
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC-------------------CCCCC
Confidence 75 32 249999999999999887888999999999999999765543221100 00011
Q ss_pred ecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 196 HKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 196 ~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..+.+++.+++.+ +|+++.....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2578999999987 5998887654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-17 Score=130.62 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=102.6
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~ 141 (244)
..+|||+|||+|.++..+++. +++|. +.+++.+++. ++++..+|+.+. ++. .|+|++..++||+++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 689999999999999988643 77899 9999988875 899999998664 443 4999999999999765
Q ss_pred HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 142 CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..+++++.++|+|||++++.+..... .+....... .. ... .......++.+++.++++++||+++++...
T Consensus 119 -~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~~~~-~~-~~~-~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 -ERALKEAYRILKKGGYLIVGIVDRES----FLGREYEKN-KE-KSV-FYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECSSS----HHHHHHHHT-TT-C-C-CSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -HHHHHHHHHHcCCCcEEEEEEeCCcc----HHHHHHHHH-hc-Ccc-hhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 58999999999999999998763321 211110000 00 000 012245579999999999999999998664
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=126.21 Aligned_cols=132 Identities=15% Similarity=0.080 Sum_probs=101.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIF 129 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~ 129 (244)
+.+++.+....+..+|||+|||+|.++..+. .+ ++++|+ +. ++++..+|+.+. ++. .|+|+
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~-v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NP-VHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SC-EEEEESSCS---------STTEEESCTTSCSCCTTCEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----cc-EEEEeCCCC---------CceEEEeccccCCCCCCCEeEEE
Confidence 3444444324566899999999999988773 46 999998 54 678889998764 443 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..++|+ .+ ...++++++++|+|||++++.+.... ..+.+++.++++++
T Consensus 121 ~~~~l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~ 169 (215)
T 2zfu_A 121 FCLSLMG-TN--IRDFLEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKL 169 (215)
T ss_dssp EESCCCS-SC--HHHHHHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHT
T ss_pred Eehhccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHC
Confidence 9999985 33 36889999999999999999875210 12688999999999
Q ss_pred CCCeEEEEEccceeEEEeecCc
Q 041308 210 GFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 210 Gf~~~~~~~~~~~~~~~~~~~~ 231 (244)
||++++.........+++++|.
T Consensus 170 Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 170 GFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp TEEEEEEECCSTTCEEEEEEEC
T ss_pred CCEEEEEecCCCeEEEEEEEec
Confidence 9999998776666677777664
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=141.74 Aligned_cols=152 Identities=15% Similarity=0.097 Sum_probs=110.6
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC----CC--
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS----IH-- 123 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~----~p-- 123 (244)
..++.+++.+. .++..+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++. .+......+... +|
T Consensus 94 ~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~-v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 94 MLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VR-HLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CE-EEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--Cc-EEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccC
Confidence 34556777776 6778899999999999999999864 36 999999 9999999875 344433222211 22
Q ss_pred --cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 --VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
..|+|++.+++||+++. ..+|++++++|||||++++....... .... ..++. . +......++.++
T Consensus 169 ~~~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~~-~~~~~--~--~~~~~~~~s~~~ 235 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGD------IVAK-TSFDQ--I--FDEHFFLFSATS 235 (416)
T ss_dssp HCCEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHH------HHHH-TCGGG--C--STTCCEECCHHH
T ss_pred CCCEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHH------hhhh-cchhh--h--hhhhhhcCCHHH
Confidence 24999999999999865 58999999999999999986543211 0000 01110 0 112345679999
Q ss_pred HHHHHHhCCCCeEEEEEcc
Q 041308 202 FKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~ 220 (244)
+.++++++||+++++...+
T Consensus 236 l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 236 VQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEEEcc
Confidence 9999999999999998865
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=133.28 Aligned_cols=142 Identities=15% Similarity=0.061 Sum_probs=109.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~ 125 (244)
..+++.++ ..+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. .++++..+|+.+. .+. .
T Consensus 110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34444444 345789999999999999999987 347 999999 9999888763 2899999999775 333 5
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++..++||++++....+++++.++|+|||+++++.....+....+ ......++.++++++
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~ 248 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP-----------------LPFSFTFAENELKEY 248 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS-----------------SCCSCCBCTTHHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC-----------------CCccccCCHHHHHHH
Confidence 999999999999988888999999999999999888766544331110 112334567889999
Q ss_pred HHhCCCCeEEEEE
Q 041308 206 GFSTGFPHLRAFI 218 (244)
Q Consensus 206 l~~aGf~~~~~~~ 218 (244)
+++ |+++....
T Consensus 249 ~~~--~~~~~~~~ 259 (286)
T 3m70_A 249 YKD--WEFLEYNE 259 (286)
T ss_dssp TTT--SEEEEEEC
T ss_pred hcC--CEEEEEEc
Confidence 854 88888743
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-17 Score=135.97 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHcccc---cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---
Q 041308 36 KMNGLMRKAMSRVFV---PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--- 108 (244)
Q Consensus 36 ~~~~~f~~~~~~~~~---~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--- 108 (244)
...+.|+..+..... .+.+.+.+.++ ..+..+|||||||+|.++..+++..+ + ++++|+ +.+++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~ 101 (293)
T 3thr_A 26 EAARVWQLYIGDTRSRTAEYKAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--S-VTSVDASDKMLKYALKERWN 101 (293)
T ss_dssp HHHHHHHHHHTCCSCBCHHHHHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCcchHHHHHHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--e-EEEEECCHHHHHHHHHhhhh
Confidence 344455555432222 22334444444 45678999999999999999998854 6 999999 9999988642
Q ss_pred -------CCeeEEeCCCCCC----CCc--ceEEEec-cccccCCH-----HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 -------PEVTHIGGDMFKS----IHV--VDAIFMK-WVLTTWTD-----DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 -------~~i~~~~gd~~~~----~p~--~D~v~~~-~~lh~~~~-----~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.++.+..+|+.+. ++. .|+|++. +++||+++ ++..+++++++++|||||++++...
T Consensus 102 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 102 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp TTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5788899998652 233 4999998 89999998 6678999999999999999998753
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-17 Score=136.65 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=98.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-C---------------------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-P--------------------------------- 109 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~--------------------------------- 109 (244)
+..+|||||||+|.++. ++...+..+ ++++|+ +.|++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFED-ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSE-EEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCe-EEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 56899999999999544 333334457 999999 9999876541 0
Q ss_pred --CeeEEeCCCCCCC-------Cc--ceEEEeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh
Q 041308 110 --EVTHIGGDMFKSI-------HV--VDAIFMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176 (244)
Q Consensus 110 --~i~~~~gd~~~~~-------p~--~D~v~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~ 176 (244)
.++++.+|+.+.+ +. .|+|++..++||+.++ +..++|++++++|||||+|++.+..... +.
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~~- 222 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----WY- 222 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----EE-
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----eE-
Confidence 1456677887632 22 5999999999995533 5678999999999999999998643211 00
Q ss_pred hhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 177 ~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+ .......++.++|.++|+++||+++++....
T Consensus 223 ---~~~~------~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 223 ---LAGE------ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ---EETT------EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---EcCC------eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0000 0011234689999999999999999887654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.9e-16 Score=125.48 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=85.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~- 124 (244)
+..+++.+. ..+..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.++++ .+++++.+|+.+. .+.
T Consensus 30 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 105 (252)
T 1wzn_A 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE 105 (252)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSC
T ss_pred HHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCC
Confidence 344555554 456689999999999999999986 457 999999 9999988753 4799999999764 443
Q ss_pred ceEEEec-cccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMK-WVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~-~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++. ..+++++.++..+++++++++|+|||.+++.
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4999986 5667788778889999999999999999864
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=134.08 Aligned_cols=155 Identities=13% Similarity=0.018 Sum_probs=108.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-C-Cc--ceEEEec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-I-HV--VDAIFMK 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~-p~--~D~v~~~ 131 (244)
.+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.+++. .+++++.+|+.+. + +. .|+|++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 56689999999999999998876 4457 999999 9999888753 4689999999874 4 33 4999999
Q ss_pred ccccc--CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC--------CchHHh-------h----hhhcccHhhhh-h
Q 041308 132 WVLTT--WTDDECKLIMENYYKALLAGRKLIACEPVLPDDS--------NESQRT-------R----ALLEGDIFVMT-I 189 (244)
Q Consensus 132 ~~lh~--~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~--------~~~~~~-------~----~~~~~d~~~~~-~ 189 (244)
.++|| .+.++...+|++++++|||||++++..+...... ...... . ....+...... .
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 5677778999999999999999999765321000 000000 0 00000000000 0
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.......++.+++.++++++||+++++..+.
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 0011245689999999999999999987764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=123.29 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=104.9
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC----CCCCeeEEeCCCCC----C-CCc-c
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP----SIPEVTHIGGDMFK----S-IHV-V 125 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~----~~~~i~~~~gd~~~----~-~p~-~ 125 (244)
++.++ +++..+|||+|||+|.++..+++..+..+ ++++|. +.+++.++ ..+++.++.+|+.+ . ++. .
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcE-EEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccE
Confidence 45555 67778999999999999999999987667 999999 88886543 34789999999976 2 333 4
Q ss_pred eEEEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 126 DAIFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 126 D~v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
|+|+ |++++. +...+++++.+.|||||++++. .........+. .. ....+++.
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~---------~~----------~~~~~~l~- 198 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD---------PK----------EIFKEQKE- 198 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC---------HH----------HHHHHHHH-
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC---------HH----------HhhHHHHH-
Confidence 9988 454433 3457799999999999999997 21111100000 00 11246778
Q ss_pred HHHhCCCCeEEEEEccce---eEEEeecCc
Q 041308 205 LGFSTGFPHLRAFISIIF---TLFLSSKSN 231 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~---~~~~~~~~~ 231 (244)
+++++||+.++...+... ..+++++++
T Consensus 199 ~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 199 ILEAGGFKIVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp HHHHHTEEEEEEEECTTTSTTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEccCCCccceEEEEEEeC
Confidence 899999999998877543 666666654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-16 Score=127.62 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=102.6
Q ss_pred CcceEEEEcCCc--cHHHHHH-HHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---C--C---c-c
Q 041308 65 GVKRLVDVGGSA--GDCLRII-LQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---I--H---V-V 125 (244)
Q Consensus 65 ~~~~vLDvG~G~--G~~~~~l-~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~--p---~-~ 125 (244)
+..+|||||||+ +.++..+ .+..|+.+ ++++|. |.|++.|++. .+++++.+|+.+. + | . .
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~ar-Vv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESR-VVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCE-EEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 568999999997 3344444 44679999 999999 9999999863 3699999999774 1 1 1 1
Q ss_pred e-----EEEeccccccCCHHH-HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 126 D-----AIFMKWVLTTWTDDE-CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 126 D-----~v~~~~~lh~~~~~~-~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
| +|++..+|||+++++ ...++++++++|+|||+|++.+...+.. +.. .....+..... ......+|.
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~---p~~--~~~~~~~~~~~--g~p~~~rs~ 229 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA---PQE--VGRVAREYAAR--NMPMRLRTH 229 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS---HHH--HHHHHHHHHHT--TCCCCCCCH
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC---HHH--HHHHHHHHHhc--CCCCccCCH
Confidence 3 688999999999876 4789999999999999999998765432 111 11122222221 122456899
Q ss_pred HHHHHHHHhCCCCeEE
Q 041308 200 QEFKQLGFSTGFPHLR 215 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~ 215 (244)
+++.++| .||+.++
T Consensus 230 ~ei~~~f--~Glelve 243 (277)
T 3giw_A 230 AEAEEFF--EGLELVE 243 (277)
T ss_dssp HHHHHTT--TTSEECT
T ss_pred HHHHHHh--CCCcccC
Confidence 9999999 4999665
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=123.87 Aligned_cols=144 Identities=11% Similarity=0.029 Sum_probs=100.9
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCC----CCCCeeEEeCCCCCC--CCc----ce
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAP----SIPEVTHIGGDMFKS--IHV----VD 126 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~----~~~~i~~~~gd~~~~--~p~----~D 126 (244)
.++ ++++.+|||+|||+|.++..+++. .|+.+ ++++|. +.|++.++ +..++..+.+|..++ .+. .|
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~-V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 344 889999999999999999999997 48888 999999 98887665 347899999998765 221 38
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLG 206 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll 206 (244)
+|++. +++. ++...+++++++.|||||++++.......+ .. .+. ....++-.+.|
T Consensus 150 vVf~d--~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d----~~---------------~p~--~~~~~~ev~~L 204 (233)
T 4df3_A 150 GLYAD--VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSID----VT---------------TEP--SEVYKREIKTL 204 (233)
T ss_dssp EEEEC--CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHH----HH---------------TCC--CHHHHHHHHHH
T ss_pred EEEEe--ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCC----CC---------------CCh--HHHHHHHHHHH
Confidence 77753 3332 334688999999999999999875322111 00 000 00112334567
Q ss_pred HhCCCCeEEEEEccc---eeEEEeec
Q 041308 207 FSTGFPHLRAFISII---FTLFLSSK 229 (244)
Q Consensus 207 ~~aGf~~~~~~~~~~---~~~~~~~~ 229 (244)
+++||+..+..++.. .+.+++++
T Consensus 205 ~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 205 MDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp HHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred HHCCCEEEEEEccCCCCCceEEEEEE
Confidence 899999999877643 45666654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=119.38 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=101.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC---
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH--- 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p--- 123 (244)
..+++.++ .++..+|||+|||+|.++..+++..|..+ ++++|. +.+++.++++ ++++++.+|+.+.++
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 34566666 77789999999999999999999998888 999999 9999988763 689999999977643
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
..|+|++...++ ....+++++.++|||||++++..... .+.+++.
T Consensus 108 ~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~~~~~~ 152 (204)
T 3e05_A 108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DTLTKAV 152 (204)
T ss_dssp CCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HHHHHHH
T ss_pred CCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------ccHHHHH
Confidence 359999988776 23588999999999999999855311 0255678
Q ss_pred HHHHhCCCCeEEE
Q 041308 204 QLGFSTGFPHLRA 216 (244)
Q Consensus 204 ~ll~~aGf~~~~~ 216 (244)
++++++|| .+++
T Consensus 153 ~~l~~~g~-~~~~ 164 (204)
T 3e05_A 153 EFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHTTC-EEEE
T ss_pred HHHHHCCC-ceeE
Confidence 89999999 4443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-16 Score=125.14 Aligned_cols=143 Identities=8% Similarity=0.012 Sum_probs=96.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHh----CCC------CCCeeEEeCCCCCC-CCcc-eEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAK----APS------IPEVTHIGGDMFKS-IHVV-DAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~----a~~------~~~i~~~~gd~~~~-~p~~-D~v~ 129 (244)
.++..+|||+|||+|.++..+++.+|..+ ++++|+ +.|++. +++ .++++++.+|+.+. ++.. |.|.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEE-EEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 56678999999999999999999999989 999999 887774 222 25899999999773 3322 6655
Q ss_pred ecc---cc--ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 130 MKW---VL--TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 130 ~~~---~l--h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
+.. .+ ||+++. ..++++++++|||||++++.-....-....+ ..... ......+..+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSVP------EVGEH------PEPTPDSADEWLAP 169 (218)
T ss_dssp EESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------GGTTC------CCCCHHHHHHHHHH
T ss_pred EEccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEecccccccccc------ccccC------CccchHHHHHHHHH
Confidence 222 22 244443 5889999999999999998432111110000 00000 01112223556889
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
+++++||++.++..+.
T Consensus 170 ~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 170 RYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCCceeeeccc
Confidence 9999999999987654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=123.22 Aligned_cols=147 Identities=9% Similarity=-0.059 Sum_probs=93.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec--hHHHHhC---CCC------CCeeEEeCCCCCCCCc--ceEEEe
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL--PEVVAKA---PSI------PEVTHIGGDMFKSIHV--VDAIFM 130 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~--~~~i~~a---~~~------~~i~~~~gd~~~~~p~--~D~v~~ 130 (244)
.+..+|||||||+|.++..++++.|+.+ ++++|+ +.|++.| +++ +++.+..+|+.+. |. .|.|.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~-v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~ 100 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTF-YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADS 100 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEE-EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEE
Confidence 4568999999999999999998889888 999999 4454444 543 5799999998554 43 255444
Q ss_pred ccccccCCHH------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 131 KWVLTTWTDD------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 131 ~~~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
..+...++.. ....+|++++++|||||++++...........+. ..... . .........+++.+
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~-----~~~~~---~--~~~~~~~~~~el~~ 170 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEI-----KKRGL---P--LLSKAYFLSEQYKA 170 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHHH
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchh-----hhcCC---C--CCChhhcchHHHHH
Confidence 4433322221 0135799999999999999995433222100000 00000 0 00111112235999
Q ss_pred HHHhCCCCeEEEEEccce
Q 041308 205 LGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~ 222 (244)
+++++||++..+......
T Consensus 171 ~l~~aGf~v~~~~~~~~~ 188 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELDNE 188 (225)
T ss_dssp HHHHHTCEEEEEEEECHH
T ss_pred HHHHcCCCeeeeeecCHH
Confidence 999999999998877643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-16 Score=120.12 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=103.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCCC-Cc-ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKSI-HV-VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~~-p~-~D~v~~~~~ 133 (244)
.+..+|||+|||+|.++..+....|+.+ ++++|+ +.|++.++++ . ++.+ .|..+.. +. +|+|++..+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~-~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKII-YHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCE-EEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 4578999999999999999999999998 999999 9999999864 2 4554 6665543 33 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecc--cCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
+|++ ++ ....+.++++.|+|||.+|..+. +.... + .++ ..-.+.|++.+ ...+
T Consensus 125 LHlL-~~-~~~al~~v~~~L~pggvfISfptksl~Gr~---~-------gm~------------~~Y~~~~~~~~-~~~~ 179 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFHTQNFVISFPIKSLSGKE---K-------GME------------ENYQLWFESFT-KGWI 179 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCEEEEEEEEEECCCCC--C---T-------TCC------------CCHHHHHHHHT-TTTS
T ss_pred HHhh-hh-hHHHHHHHHHHhCCCCEEEEeChHHhcCCC---c-------chh------------hhHHHHHHHhc-cCcc
Confidence 9999 44 34566699999999999998873 21111 0 011 11145677777 6777
Q ss_pred CeEEEEEccceeEEEeecC
Q 041308 212 PHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ 230 (244)
.+++...++.-..+++.++
T Consensus 180 ~~~~~~~~~nEl~y~~~~~ 198 (200)
T 3fzg_A 180 KILDSKVIGNELVYITSGF 198 (200)
T ss_dssp CEEEEEEETTEEEEEECCC
T ss_pred eeeeeeeeCceEEEEEecc
Confidence 8888877877777777654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-17 Score=130.30 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=85.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
..+..+|||+|||+|.++..+++... + ++++|+ +.+++.+++. ++++++.+|+.+..+. .|+|++..++|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK--R-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLY 125 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE--E-EEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHH
Confidence 55678999999999999999998863 5 999999 9999888753 6899999999776433 49999999999
Q ss_pred cCCH-HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTD-DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~-~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+++ ++..++++++.++|||||++++...
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9996 5566889999999999999999765
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=119.26 Aligned_cols=143 Identities=11% Similarity=0.002 Sum_probs=106.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~- 124 (244)
+..++..++ +. +|||+|||+|.++..+++. ..+ ++++|. +.+++.+++. .++++..+|+.+. ++.
T Consensus 21 l~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (202)
T 2kw5_A 21 LVSVANQIP---QG-KILCLAEGEGRNACFLASL--GYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVAD 93 (202)
T ss_dssp HHHHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCE-EEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTT
T ss_pred HHHHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcC
Confidence 444555443 44 9999999999999999986 347 999999 9999888764 3899999999775 443
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++. +.|++.++...+++++.++|+|||++++.+...... . .. .. . .......++.+++.
T Consensus 94 ~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~-~~-----~~----~-~~~~~~~~~~~~l~ 157 (202)
T 2kw5_A 94 AWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL---Q-YN-----TG----G-PKDLDLLPKLETLQ 157 (202)
T ss_dssp TCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTG---G-GT-----SC----C-SSSGGGCCCHHHHH
T ss_pred CccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc---c-CC-----CC----C-CCcceeecCHHHHH
Confidence 4999984 345677778899999999999999999988743321 0 00 00 0 01113457899999
Q ss_pred HHHHhCCCCeEEEEEcc
Q 041308 204 QLGFSTGFPHLRAFISI 220 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~ 220 (244)
++++ ||+++++....
T Consensus 158 ~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 158 SELP--SLNWLIANNLE 172 (202)
T ss_dssp HHCS--SSCEEEEEEEE
T ss_pred HHhc--CceEEEEEEEE
Confidence 9998 99999986653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-17 Score=131.08 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=97.0
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCC---C
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFK---S 121 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~---~ 121 (244)
++++.+++... .++.+|||||||+|..+..+++..|. + ++++|+ |.|++.|++. .++.++.+|..+ +
T Consensus 48 ~~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~~~-~-v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~ 123 (236)
T 3orh_A 48 PYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp HHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG
T ss_pred HHHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhCCc-E-EEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc
Confidence 33444555443 45689999999999999999987664 6 899999 9999998753 568888888743 2
Q ss_pred CCc--ceEEEe-----ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 122 IHV--VDAIFM-----KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 122 ~p~--~D~v~~-----~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
++. .|.|++ ...++|+.+. ..++++++|+|||||+|++.+...... .....++. -
T Consensus 124 ~~~~~FD~i~~D~~~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~~---------~ 185 (236)
T 3orh_A 124 LPDGHFDGILYDTYPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYSD---------I 185 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCSC---------H
T ss_pred ccccCCceEEEeeeecccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhhh---------h
Confidence 443 377753 4555555554 588999999999999999865321100 00011110 0
Q ss_pred eecCHHHHHHHHHhCCCCeEEEE
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~ 217 (244)
.....+.+...|.++||+...+.
T Consensus 186 ~~~~~~~~~~~L~eaGF~~~~i~ 208 (236)
T 3orh_A 186 TIMFEETQVPALLEAGFRRENIR 208 (236)
T ss_dssp HHHHHHHTHHHHHHHTCCGGGEE
T ss_pred hhhhHHHHHHHHHHcCCeEEEEE
Confidence 01124566777889999976654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-15 Score=115.10 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=96.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc--ceEEEeccccccCCHH-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV--VDAIFMKWVLTTWTDD- 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~~~- 140 (244)
+..+|||+|||+|.++..+++.. + ++++|+ +.+++. ..+++++.+|+.++++. .|+|+++..+|+.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~-v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---T-VVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---E-EEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---c-EEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 45799999999999999999876 6 999999 999987 57899999999887553 4999999888865543
Q ss_pred ------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 141 ------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 141 ------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
+...+++++.+.| |||++++.+... ...+++.++++++||+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~gf~~~ 144 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEERGYGTR 144 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHTTCEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHCCCcEE
Confidence 3457889999999 999999976311 126678999999999988
Q ss_pred EEEEcc
Q 041308 215 RAFISI 220 (244)
Q Consensus 215 ~~~~~~ 220 (244)
.+....
T Consensus 145 ~~~~~~ 150 (170)
T 3q87_B 145 ILKVRK 150 (170)
T ss_dssp EEEEEE
T ss_pred EEEeec
Confidence 876643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=120.58 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=105.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~v~~~~~lh 135 (244)
++..+|||+|||+|.++..+++. +..+ ++++|. +.+++.++++ .++++..+|+.+..+. .|+|++...+|
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-GAKS-VLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 45689999999999999998864 5567 999999 9999888763 3499999999876544 59999988876
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+ ...+++++.++|+|||++++.+... .+.+++.++++++||+.++
T Consensus 137 ~-----~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNEDGQVIFSGIDY------------------------------LQLPKIEQALAENSFQIDL 181 (205)
T ss_dssp H-----HHHHGGGSGGGEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTEEEEE
T ss_pred H-----HHHHHHHHHHhcCCCCEEEEEecCc------------------------------ccHHHHHHHHHHcCCceEE
Confidence 5 3578999999999999999965421 1256788999999999999
Q ss_pred EEEccceeEEEeecCc
Q 041308 216 AFISIIFTLFLSSKSN 231 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (244)
+.....-..++..+++
T Consensus 182 ~~~~~~w~~~~~~~~~ 197 (205)
T 3grz_A 182 KMRAGRWIGLAISRKH 197 (205)
T ss_dssp EEEETTEEEEEEEECC
T ss_pred eeccCCEEEEEEeccc
Confidence 8887766667666654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=130.67 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=91.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------------CCCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---------------IPEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------------~~~i~~~~g 116 (244)
+..+++.+. +++..+|||||||+|..+..++...+..+ ++++|+ +.+++.|++ ..+|+|+.|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~k-VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 455666666 78889999999999999999998876556 999999 888777753 268999999
Q ss_pred CCCCC-CC----cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC
Q 041308 117 DMFKS-IH----VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS 170 (244)
Q Consensus 117 d~~~~-~p----~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~ 170 (244)
|+++. ++ .+|+|+++.+++ . ++....|++++++|||||+|++.|.+.+++.
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 99875 42 369999887764 2 3456778999999999999999999887653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=118.38 Aligned_cols=137 Identities=15% Similarity=0.056 Sum_probs=98.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIF 129 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~ 129 (244)
++..+. .+..+|||+|||+|.++..+ +. + ++++|. +.+++.+++. .+++++.+|+.+. ++. .|+|+
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQ-KVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSE-EEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 444443 25689999999999998877 34 6 999999 9999988765 6899999998764 444 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..++||+++. .+++++++++|||||++++.+..... .+.... ......... .....+.++.++++++++
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~-~~~~~~~~~-~~~~~~~~s~~~l~~~l~-- 170 (211)
T 2gs9_A 101 LFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALS----PWAALY-RRLGEKGVL-PWAQARFLAREDLKALLG-- 170 (211)
T ss_dssp EESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTS----HHHHHH-HHHHHTTCT-TGGGCCCCCHHHHHHHHC--
T ss_pred EcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcC----cHHHHH-HHHhhccCc-cccccccCCHHHHHHHhc--
Confidence 99999999865 58999999999999999998763321 221110 000000000 011245679999999998
Q ss_pred C
Q 041308 210 G 210 (244)
Q Consensus 210 G 210 (244)
|
T Consensus 171 G 171 (211)
T 2gs9_A 171 P 171 (211)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=121.41 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=105.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEecc--
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKW-- 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~-- 132 (244)
.+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.++++ ++++++.+|+++.++. .|+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCC
Confidence 3457999999999999999999999888 999999 9999988764 5799999999887533 59999974
Q ss_pred -----------ccccCCH----------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 133 -----------VLTTWTD----------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 133 -----------~lh~~~~----------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
+++|-+. +....+++++.+.|+|||++++...
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~--------------------------- 239 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG--------------------------- 239 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---------------------------
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---------------------------
Confidence 3333221 3456899999999999999998421
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEE-EccceeEEEeecC
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAF-ISIIFTLFLSSKS 230 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~-~~~~~~~~~~~~~ 230 (244)
....+++.++++++||+.+++. +..+...++++++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0125678999999999977765 4566667776653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=121.49 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=81.7
Q ss_pred CcceEEEEcCCccH----HHHHHHHHcC----CCCeEEEeec-hHHHHhCCCC---------------------------
Q 041308 65 GVKRLVDVGGSAGD----CLRIILQKHC----FICEGINFDL-PEVVAKAPSI--------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~~D~-~~~i~~a~~~--------------------------- 108 (244)
+..+|+|+|||||. ++..+++..+ +.+ ++++|+ +.|++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~-I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~ 183 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 183 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeE-EEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence 34799999999998 5566666645 357 999999 9999988652
Q ss_pred ----------CCeeEEeCCCCCC-CC--c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 109 ----------PEVTHIGGDMFKS-IH--V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 109 ----------~~i~~~~gd~~~~-~p--~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+|.|..+|+.++ ++ . .|+|+|++++++++++...+++++++++|+|||+|++-
T Consensus 184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2589999999984 55 2 49999999999999988889999999999999999984
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=116.20 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=98.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHH----HhCCCCCCeeEEeCCCCCC-----CCc-ceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVV----AKAPSIPEVTHIGGDMFKS-----IHV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i----~~a~~~~~i~~~~gd~~~~-----~p~-~D~v~~ 130 (244)
++++.+|||+|||+|.++..+++.. |+.+ ++++|. +.|+ +.+++..++.++.+|+.++ +.. .|+|++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~-V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGK-AYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSE-EEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 6788999999999999999999874 5778 999999 8664 4454457899999999764 122 599987
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
.... +++...+++++.+.|||||++++.-.....+... .+ .-..++..+.|+++|
T Consensus 153 d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~------------------~~---~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 153 DIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK------------------DP---KEIYKTEVEKLENSN 207 (232)
T ss_dssp CCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-------C------------------CS---SSSTTHHHHHHHHTT
T ss_pred cCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCC------------------CH---HHHHHHHHHHHHHCC
Confidence 6443 2344455667777999999999873211100000 00 001123456778899
Q ss_pred CCeEEEEEcc---ceeEEEeecCc
Q 041308 211 FPHLRAFISI---IFTLFLSSKSN 231 (244)
Q Consensus 211 f~~~~~~~~~---~~~~~~~~~~~ 231 (244)
|++.+...+. .++.+++++++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEEEC
T ss_pred CEEEEEeccCCCcCceEEEEEEeC
Confidence 9999988873 36778887764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=113.06 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=106.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C--CeeEEeCCCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P--EVTHIGGDMFKSIH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~--~i~~~~gd~~~~~p 123 (244)
.+.+++.+. .++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ . ++++..+|+.+..+
T Consensus 41 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (194)
T 1dus_A 41 TKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK 116 (194)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred HHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence 445666666 667789999999999999999987 557 999999 9999888753 3 49999999988755
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++...+|+ ..+....+++++.+.|+|||++++...... ..++
T Consensus 117 ~~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~ 165 (194)
T 1dus_A 117 DRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ------------------------------GAKS 165 (194)
T ss_dssp TSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH------------------------------HHHH
T ss_pred cCCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC------------------------------ChHH
Confidence 4 499999888875 345567899999999999999999765210 0234
Q ss_pred HHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 202 FKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
+.+.+++. |..+++.....+..++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 56666776 66666655555555555544
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-15 Score=124.19 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---CCc--ceEEEe-c
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---IHV--VDAIFM-K 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~p~--~D~v~~-~ 131 (244)
.+..+|||||||+|.++..+++..+ .+ ++++|+ +.|++.|+++ .+++++.+|+.+. ++. .|+|++ .
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EE-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-Ce-EEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECC
Confidence 4568999999999999999976544 36 999999 9999888753 5799999998653 443 499998 5
Q ss_pred cc--cccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WV--LTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~--lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+. .+.+.......++++++++|||||++++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 54 34444445567899999999999999998753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-15 Score=123.16 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=84.4
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCC---CeeEEeCCCCC----CC
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIP---EVTHIGGDMFK----SI 122 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~---~i~~~~gd~~~----~~ 122 (244)
...+.+++.++ ..+..+|||||||+|.++..++++. .+ ++++|+ +.|++.++++. .+.....++.. ..
T Consensus 32 ~~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~-V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 32 SDRENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--AS-VTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKEL 107 (261)
T ss_dssp CHHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGG
T ss_pred HHHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHhccceeeeeeccccccccc
Confidence 34566777776 7788999999999999999999874 46 999999 99999888641 12222222221 11
Q ss_pred C-cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 123 H-VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 123 p-~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+ ..|+|++..++||+..++...+++++.++| |||++++.-
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 2 259999999999999888889999999999 999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=113.83 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHH----HHhCCCCCCeeEEeCCCCCC-----CCc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEV----VAKAPSIPEVTHIGGDMFKS-----IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~----i~~a~~~~~i~~~~gd~~~~-----~p~-~D~v~~~ 131 (244)
.+++.+|||+|||+|.++..+++..+..+ ++++|+ +.| ++.+++..++.++.+|+.++ ++. .|+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~-V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCE-EEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 56778999999999999999999887667 999999 764 44454457899999998763 233 4999986
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+.++ ++...++++++++|||||++++.
T Consensus 134 -~~~~---~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 134 -IAQK---NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -CCST---THHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccCh---hHHHHHHHHHHHHhCCCCEEEEE
Confidence 3332 34456699999999999999997
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-15 Score=124.72 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=99.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----C--------CeeEEeCCCCC---------CC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----P--------EVTHIGGDMFK---------SI 122 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~--------~i~~~~gd~~~---------~~ 122 (244)
+..+|||||||+|..+..+++.. ..+ ++++|+ +.|++.|++. . ++++..+|+.. ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~-v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IAL-LVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCe-EEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 46899999999998777666543 346 999999 9999999863 1 25677888732 22
Q ss_pred Cc--ceEEEeccccccC-CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC------------CchHHhhhhhcc----c
Q 041308 123 HV--VDAIFMKWVLTTW-TDDECKLIMENYYKALLAGRKLIACEPVLPDDS------------NESQRTRALLEG----D 183 (244)
Q Consensus 123 p~--~D~v~~~~~lh~~-~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~------------~~~~~~~~~~~~----d 183 (244)
+. .|+|++..++|++ ++++...+|++++++|||||++++......... .......+.... +
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 32 4999999999974 444457999999999999999998765211100 000000000000 0
Q ss_pred -H-hh-hhhhccC--ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 184 -I-FV-MTIYRAK--GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 184 -~-~~-~~~~~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
+ .+ ....... -...+.+++.++++++||++++...+.
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~ 247 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA 247 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence 0 00 0000001 123567999999999999999987653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=117.34 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=99.7
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHH----HHhCCCCCCeeEEeCCCCCC--CC--c--c
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEV----VAKAPSIPEVTHIGGDMFKS--IH--V--V 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~----i~~a~~~~~i~~~~gd~~~~--~p--~--~ 125 (244)
+.++ +++..+|||+|||+|.++..+++.. |..+ ++++|+ +.+ ++.+++..+++++.+|+.+. ++ . .
T Consensus 71 ~~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~~~~-v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 71 DQIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGL-VYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp SCCC-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCE
T ss_pred heec-CCCCCEEEEEcccCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcE
Confidence 3444 6777899999999999999999986 6678 999999 664 44444458899999999874 22 2 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++... ..++...+++++.++|||||++++. ....... ........ + .++ .++
T Consensus 149 D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~-~~~~~~~---------~~~~~~~~---------~-~~~-~~~ 203 (233)
T 2ipx_A 149 DVIFADVA----QPDQTRIVALNAHTFLRNGGHFVIS-IKANCID---------STASAEAV---------F-ASE-VKK 203 (233)
T ss_dssp EEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEE-EEHHHHC---------SSSCHHHH---------H-HHH-HHT
T ss_pred EEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEE-Ecccccc---------cCCCHHHH---------H-HHH-HHH
Confidence 99998544 3344457789999999999999983 2110000 00000000 1 223 588
Q ss_pred HHhCCCCeEEEEEccc---eeEEEeecC
Q 041308 206 GFSTGFPHLRAFISII---FTLFLSSKS 230 (244)
Q Consensus 206 l~~aGf~~~~~~~~~~---~~~~~~~~~ 230 (244)
|+++||++++...... +..++++++
T Consensus 204 l~~~Gf~~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 204 MQQENMKPQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp TGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred HHHCCCceEEEEecCCccCCcEEEEEEe
Confidence 9999999999766543 456666554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-15 Score=125.00 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------CCeeEEeCCCCCC-----C--
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------PEVTHIGGDMFKS-----I-- 122 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------~~i~~~~gd~~~~-----~-- 122 (244)
.+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.+++. .+++++.+|+.+. +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINK-LVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCE-EEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 35689999999999999999874 5567 999999 9999888753 2789999999764 3
Q ss_pred C--cceEEEeccccccC--CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 H--VVDAIFMKWVLTTW--TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 p--~~D~v~~~~~lh~~--~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..|+|++..++|++ +.++...+|++++++|||||++++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 2 24999999999997 445677999999999999999998765
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-15 Score=122.63 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=95.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
+.+++.++ ..+..+|||+|||+|.++..+++. .|..+ ++++|+ +.+++.++++ +++++..+|+.+.++.
T Consensus 100 ~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 100 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 177 (275)
T ss_dssp ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence 35666666 778899999999999999999998 67788 999999 9898877642 5799999999887654
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++ ++++. ..+++++.++|||||++++...... ..+++
T Consensus 178 ~~fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~------------------------------~~~~~ 220 (275)
T 1yb2_A 178 QMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD------------------------------QSEKT 220 (275)
T ss_dssp CCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH------------------------------HHHHH
T ss_pred CCccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH------------------------------HHHHH
Confidence 499997 34443 4789999999999999999764110 13456
Q ss_pred HHHHHhCCCCeEEEEE
Q 041308 203 KQLGFSTGFPHLRAFI 218 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~ 218 (244)
.++++++||+.+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6777888998877755
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.5e-14 Score=111.80 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=100.9
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhC----CCCCCeeEEeCCCCCC-----CCc-
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKA----PSIPEVTHIGGDMFKS-----IHV- 124 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a----~~~~~i~~~~gd~~~~-----~p~- 124 (244)
++.++ +++..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.+ +..++++++.+|+.+. ++.
T Consensus 66 l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 66 LKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred HHhcC-CCCCCEEEEEeccCCHHHHHHHHHhCCCeE-EEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCC
Confidence 34444 6677899999999999999999885 5567 999999 8665544 3447899999999873 233
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++... .+++...++++++++|||||++++. .........+ . ......+++.+
T Consensus 144 ~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~---------~----------~~~~~~~~l~~ 199 (227)
T 1g8a_A 144 VDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK---------E----------PEQVFREVERE 199 (227)
T ss_dssp EEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS---------C----------HHHHHHHHHHH
T ss_pred ceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC---------C----------hhhhhHHHHHH
Confidence 499996544 2333445699999999999999997 2111110000 0 00123567777
Q ss_pred HHHhCCCCeEEEEEccce---eEEEeecC
Q 041308 205 LGFSTGFPHLRAFISIIF---TLFLSSKS 230 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~---~~~~~~~~ 230 (244)
+ .++ |++++....... ..++++++
T Consensus 200 l-~~~-f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 200 L-SEY-FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp H-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred H-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence 7 788 999998876433 56666654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-15 Score=121.23 Aligned_cols=145 Identities=14% Similarity=-0.002 Sum_probs=91.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCC------
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIH------ 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p------ 123 (244)
+++.++...+..+|||+|||+|.++..+++.+|+.+ ++++|+ +.+++.++++ .+++++.+|+.++++
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVS-VTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEE-EEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence 444443125678999999999999999999998888 999999 9999999875 168888888876543
Q ss_pred -cceEEEeccccc------cCCHHHH------------------HHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhh
Q 041308 124 -VVDAIFMKWVLT------TWTDDEC------------------KLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA 178 (244)
Q Consensus 124 -~~D~v~~~~~lh------~~~~~~~------------------~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~ 178 (244)
..|+|++...++ +++++.. ..+++++.++|||||++++++...
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------ 167 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------------ 167 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------------
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------------
Confidence 249999964443 3333222 678999999999999965554310
Q ss_pred hhcccHhhhhhhccCceecCHHHHHHHHH--hCCCCeEEEEEc-cceeEEEeecCc
Q 041308 179 LLEGDIFVMTIYRAKGKHKTEQEFKQLGF--STGFPHLRAFIS-IIFTLFLSSKSN 231 (244)
Q Consensus 179 ~~~~d~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~-~~~~~~~~~~~~ 231 (244)
...+++.++++ ++||..+++... .+...++++++.
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 12456788888 999988776554 445566666543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-15 Score=114.01 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=83.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV-- 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~-- 124 (244)
.+++.++ ..+..+|||+|||+|.++..+++.+|..+ ++++|+ +.+++.++++ .++ ++.+|..+.++.
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTT-AVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEE-EEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3455555 66778999999999999999999988888 999999 9899888752 378 888998766443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...+|+ ..+++++.+.|+|||++++.+.
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 599999999987 4789999999999999998664
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=111.11 Aligned_cols=133 Identities=12% Similarity=0.001 Sum_probs=91.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC--C-Cc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS--I-HV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~--~-p~-~D~v~~~ 131 (244)
.++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.|+++ ++++++.+|.... + +. .|+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 466789999999999999999987 567 999999 9999988763 6899999776441 2 23 4999876
Q ss_pred c-cccc------CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 132 W-VLTT------WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 132 ~-~lh~------~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
. .+++ ...+....+++++.++|||||++++......+... .. .....+|.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~---------------------~~~~~~~~~ 154 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD-ME---------------------KDAVLEYVI 154 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C-HH---------------------HHHHHHHHH
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH-HH---------------------HHHHHHHHH
Confidence 3 2222 02355678899999999999999997653222110 00 011345566
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
.+.+.+|.+.......
T Consensus 155 ~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 155 GLDQRVFTAMLYQPLN 170 (185)
T ss_dssp HSCTTTEEEEEEEESS
T ss_pred hCCCceEEEEEehhhc
Confidence 6667788888877653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=115.18 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=84.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~--~D~v~~~~~lh 135 (244)
.+..+|||+|||+|.++..+++..+. + ++++|+ +.+++.+++. +++++..+|+.+. ++. .|+|++..++|
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~-v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-N-VTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-C-EEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-c-EEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 56689999999999999999988664 7 999999 9999887753 6899999999774 543 49999999988
Q ss_pred cCC-------------HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWT-------------DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~-------------~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++. .++...+++++.++|||||++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 765 44567899999999999999999875
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=111.70 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=96.2
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCC---CC
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKS---IH 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~---~p 123 (244)
.++..++ ..+..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ + +++++.+|+.+. .+
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGR-AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3555555 677789999999999999999987 567 999999 9999988753 4 899999999874 33
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
..|+|++...+ + .. +++++.++|||||++++..... .+..++.
T Consensus 122 ~~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~ 164 (204)
T 3njr_A 122 LPEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL------------------------------ESETLLT 164 (204)
T ss_dssp CCSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH------------------------------HHHHHHH
T ss_pred CCCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc------------------------------ccHHHHH
Confidence 46999987644 1 23 8999999999999999855311 0145667
Q ss_pred HHHHhCCCCeEEEEEc
Q 041308 204 QLGFSTGFPHLRAFIS 219 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~ 219 (244)
+++++.|+++.++...
T Consensus 165 ~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 165 QLHARHGGQLLRIDIA 180 (204)
T ss_dssp HHHHHHCSEEEEEEEE
T ss_pred HHHHhCCCcEEEEEee
Confidence 8889999888886443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=131.39 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC------------CCCeeEEeCCCCCC-CCc--ce
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPS------------IPEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~------------~~~i~~~~gd~~~~-~p~--~D 126 (244)
.+..+|||||||+|.++..+++.. |..+ ++++|+ +.|++.|++ ..+++++.+|+.+. .+. .|
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~-VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQT-IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCE-EEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 356899999999999999999987 4467 999999 999998865 25799999999775 332 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|++..++||+++++...++++++++|||| .+++..+
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 999999999999998888999999999999 7777654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=113.25 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=96.2
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCC--CCCCCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDM--FKSIHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~--~~~~p~--~D~v~~~ 131 (244)
.++..+|||+||| +|.++..+++.. ..+ ++++|+ +.+++.++++ .+++++.+|+ +.+++. .|+|++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCK-VTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCE-EEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence 4677899999999 999999999886 567 999999 9999988753 3799999996 344543 4999998
Q ss_pred cccccCCHHH-----------------HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 132 WVLTTWTDDE-----------------CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 132 ~~lh~~~~~~-----------------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
..+++..+.+ ...+++++.+.|||||++++.-.. . .
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~---~--------------------- 183 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---K---E--------------------- 183 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES---C---H---------------------
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc---c---H---------------------
Confidence 7776654422 267899999999999999985321 0 0
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
...+++.++++++||++..+....+
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1156788999999998777755443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.2e-14 Score=114.41 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=100.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p 123 (244)
...++..++ ..+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.|+++ .++++..+|+.+.++
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGR-VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE 159 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeE-EEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence 344666666 778899999999999999999998 77888 999999 9999988863 459999999987766
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++. .++. ..+++++.++|+|||++++...... ..++
T Consensus 160 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~ 202 (255)
T 3mb5_A 160 EENVDHVILD-----LPQP--ERVVEHAAKALKPGGFFVAYTPCSN------------------------------QVMR 202 (255)
T ss_dssp CCSEEEEEEC-----SSCG--GGGHHHHHHHEEEEEEEEEEESSHH------------------------------HHHH
T ss_pred CCCcCEEEEC-----CCCH--HHHHHHHHHHcCCCCEEEEEECCHH------------------------------HHHH
Confidence 5 4999873 3333 4689999999999999998653110 1445
Q ss_pred HHHHHHhCC--CCeEEEEEc
Q 041308 202 FKQLGFSTG--FPHLRAFIS 219 (244)
Q Consensus 202 ~~~ll~~aG--f~~~~~~~~ 219 (244)
+.++++++| |..+++...
T Consensus 203 ~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHcCCCccccEEEEE
Confidence 678888999 988876443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-14 Score=116.70 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=97.7
Q ss_pred HHHhccCCCCC-CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-CCCCCeeEEe-CCCCC----CCCc-
Q 041308 54 TSVLDGYDGFK-GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA-PSIPEVTHIG-GDMFK----SIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-~~~~~i~~~~-gd~~~----~~p~- 124 (244)
..+++.+. .. +..+|||+|||||.++..+++. +..+ ++++|+ +.|++.+ +..+++.... .|+.. .+|.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~-V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKL-VYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 34556665 43 4579999999999999999876 3446 999999 9998873 4446654433 34321 1443
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch-HHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++..++|++ ..+|++++++|+|||+++++- .|+-.... .........|. ....++.+++
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~--------~~~~~~~~~v 215 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRES--------SIHEKVLETV 215 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCH--------HHHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCH--------HHHHHHHHHH
Confidence 5999988888764 478999999999999999862 11110000 00000011111 1122467899
Q ss_pred HHHHHhCCCCeEEEEEcc
Q 041308 203 KQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~ 220 (244)
.++++++||.+..+...+
T Consensus 216 ~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 216 TAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHTTEEEEEEEECS
T ss_pred HHHHHHCCCEEEEEEECC
Confidence 999999999999887754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-15 Score=125.26 Aligned_cols=145 Identities=10% Similarity=-0.012 Sum_probs=96.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCC----CCC-----cceE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFK----SIH-----VVDA 127 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~----~~p-----~~D~ 127 (244)
+..+|||+|||+|.++..++++.|..+ ++++|+ +.+++.|+++ .+++++.+|+.+ +++ ..|+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 457999999999999999999888888 999999 9999988753 469999999643 444 2599
Q ss_pred EEeccccccCCH-------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 128 IFMKWVLTTWTD-------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 128 v~~~~~lh~~~~-------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
|++...+|+... +....++++++++|||||.+.+++...... .......... ....+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~---------~~~l~~~g~~-~~~~~ 213 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS---------LQLKKRLRWY-SCMLG 213 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH---------HHHGGGBSCE-EEEES
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH---------HhcccceEEE-EECCC
Confidence 999876665431 112356789999999999998876532210 0000000000 01113
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+.+++.++++++||+.+++....
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 33445889999999999998887654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-15 Score=117.82 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=91.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCC--C-c--ceEEEecccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSI--H-V--VDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~--p-~--~D~v~~~~~lh~ 136 (244)
++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ ++++++.+|+.+.+ + . .|+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AAR-WAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 45689999999999999999987 456 999999 9999988764 78999999997653 3 3 49999871
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
+...+++++.++|||||+++... ...+.+++.++++++||+...+
T Consensus 120 ----~~~~~l~~~~~~LkpgG~l~~~~-------------------------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ----GPTSVILRLPELAAPDAHFLYVG-------------------------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ----CCSGGGGGHHHHEEEEEEEEEEE-------------------------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEeC-------------------------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 12478999999999999999100 0123456889999999999888
Q ss_pred EEccce
Q 041308 217 FISIIF 222 (244)
Q Consensus 217 ~~~~~~ 222 (244)
......
T Consensus 165 ~~~~~~ 170 (226)
T 3m33_A 165 DHVSVL 170 (226)
T ss_dssp EEEEEE
T ss_pred Eeeeec
Confidence 765433
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-14 Score=116.26 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=96.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
++..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ -.+++..+|+.+.++. .|+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~-v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--K-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--e-EEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 4568999999999999999998765 7 999999 9999888763 1289999998765543 59999875544
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+ ...+++++.+.|+|||++++.+... .+.+++.++++++||++++
T Consensus 196 ~-----~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 L-----HAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp H-----HHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEE
T ss_pred H-----HHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 3 4688999999999999999965421 1256789999999999999
Q ss_pred EEEcccee
Q 041308 216 AFISIIFT 223 (244)
Q Consensus 216 ~~~~~~~~ 223 (244)
+.....-.
T Consensus 241 ~~~~~~W~ 248 (254)
T 2nxc_A 241 EAAEGEWV 248 (254)
T ss_dssp EEEETTEE
T ss_pred EeccCCeE
Confidence 87655433
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=122.23 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCCCCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~~p~ 124 (244)
.+++.++ .....+|||+|||+|.++..+++.+|..+ ++++|. +.+++.++++ .++++..+|++++++.
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~-V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCE-EEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3666666 45558999999999999999999999999 999999 9999988863 2588899999988664
Q ss_pred --ceEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 --VDAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 --~D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...+|+ +.+.....+++++.+.|||||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 599999999886 334455678999999999999999965
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-14 Score=111.63 Aligned_cols=135 Identities=14% Similarity=0.046 Sum_probs=97.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--C-Cc-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--I-HV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~-p~-~D~v~ 129 (244)
.++..+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++++ ++++++.+|+.+. . +. .|+|+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGR-VFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 4567899999999999999999986 5667 999999 9999988764 5799999997553 2 22 49999
Q ss_pred ecccc-------ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 130 MKWVL-------TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 130 ~~~~l-------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
+...+ +....+....+++++.++|||||++++.......... .. .....+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~-~~---------------------~~~~~~~ 156 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGF-EE---------------------KEKVLEF 156 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBS-HH---------------------HHHHHHH
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcH-HH---------------------HHHHHHH
Confidence 87655 1122334567999999999999999998754322210 00 0012344
Q ss_pred HHHHHhCCCCeEEEEEcc
Q 041308 203 KQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~ 220 (244)
.+.+.+.+|++.....+.
T Consensus 157 ~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 157 LKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp HTTSCTTTEEEEEEEETT
T ss_pred HHhCCCCcEEEEEEEecc
Confidence 445566788888887754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=119.27 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=99.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~--~D~ 127 (244)
+++.+|||||||+|.+++.+++..+..+ ++++|+ +.+++.++++ ++++++.+|+.+.. +. .|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEH-CDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 4568999999999999999998766677 999999 9999887742 68999999986542 23 499
Q ss_pred EEeccccccCCHHHH--HHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 128 IFMKWVLTTWTDDEC--KLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 128 v~~~~~lh~~~~~~~--~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|++....+..+.... ..++++++++|||||++++.... ++ .+ ....+++.+.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~-------~~-------~~------------~~~~~~~~~~ 226 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES-------IW-------LD------------LELIEKMSRF 226 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC-------TT-------TC------------HHHHHHHHHH
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC-------cc-------cc------------hHHHHHHHHH
Confidence 999776655443222 47899999999999999986321 11 00 0125678899
Q ss_pred HHhCCCCeEEEEEcc------ceeEEEeecC
Q 041308 206 GFSTGFPHLRAFISI------IFTLFLSSKS 230 (244)
Q Consensus 206 l~~aGf~~~~~~~~~------~~~~~~~~~~ 230 (244)
++++||..+++.... +..+++++.+
T Consensus 227 l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 227 IRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred HHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 999999998887652 3344555554
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-14 Score=110.81 Aligned_cols=121 Identities=18% Similarity=0.118 Sum_probs=94.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---~ 124 (244)
+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ .++++..+|+.+.++ .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CE-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 444444 6677899999999999999999877 56 999999 9999888752 589999999866433 3
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++...++++ ..+++++.++|+|||++++..... .+..++.+
T Consensus 101 ~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~------------------------------~~~~~~~~ 145 (192)
T 1l3i_A 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL------------------------------ETKFEAME 145 (192)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH------------------------------HHHHHHHH
T ss_pred CCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc------------------------------chHHHHHH
Confidence 5999999887652 578999999999999999865410 01456788
Q ss_pred HHHhCCCCeEE
Q 041308 205 LGFSTGFPHLR 215 (244)
Q Consensus 205 ll~~aGf~~~~ 215 (244)
++++.||.+..
T Consensus 146 ~l~~~g~~~~~ 156 (192)
T 1l3i_A 146 CLRDLGFDVNI 156 (192)
T ss_dssp HHHHTTCCCEE
T ss_pred HHHHCCCceEE
Confidence 89999995443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=116.52 Aligned_cols=122 Identities=13% Similarity=-0.011 Sum_probs=94.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C----Cc-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I----HV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~----p~-~D~v~ 129 (244)
+++..+|||+|||+|.++..++...|+.+ ++++|. +.+++.++++ ++++++.+|+.+. . +. .|+|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 34668999999999999999998888888 999999 9999888753 5799999998542 2 22 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..+ .+ ...+++++.++|+|||++++.+.... . ...+++.+.++++
T Consensus 147 ~~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~-----~-----------------------~~~~~~~~~l~~~ 192 (240)
T 1xdz_A 147 ARAV----AR--LSVLSELCLPLVKKNGLFVALKAASA-----E-----------------------EELNAGKKAITTL 192 (240)
T ss_dssp EECC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C-----H-----------------------HHHHHHHHHHHHT
T ss_pred Eecc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc-----h-----------------------HHHHHHHHHHHHc
Confidence 8763 22 35889999999999999998642110 0 0134567888999
Q ss_pred CCCeEEEEEc
Q 041308 210 GFPHLRAFIS 219 (244)
Q Consensus 210 Gf~~~~~~~~ 219 (244)
||++.++..+
T Consensus 193 g~~~~~~~~~ 202 (240)
T 1xdz_A 193 GGELENIHSF 202 (240)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEeEEEEE
Confidence 9999887653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=109.04 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=78.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~ 132 (244)
+..+|||+|||+|.++..+++.+|+.+ ++++|+ +.+++.++++ ++++++.+|+.+. ++. .|+|++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCC-EEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 457999999999999999999999888 999999 9999888753 6899999999762 333 49999886
Q ss_pred ccccCCHH------HHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTDD------ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d 163 (244)
..++.... ....+++++.++|+|||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 54322210 11478999999999999999853
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=121.92 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=90.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc-c
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV-V 125 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~-~ 125 (244)
.+.+++.++ .....+|||+|||+|.++..+++.+|..+ ++++|. +.+++.++++ .++++..+|+++..+. .
T Consensus 185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIR-LTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCB-CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 344666665 44567999999999999999999999888 999999 8999888753 3467889999776443 5
Q ss_pred eEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|++...+|+ ...+....++++++++|||||+++++..
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 99999999986 2455567999999999999999999765
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=114.89 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~ 133 (244)
++++.+|||||||+|.++..++.+.++.+ ++++|+ +.|++.|+++ ++++++.+|+.+ +|. +|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC
Confidence 67889999999999988766666678888 999999 9999999864 689999999966 343 499997654
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.++ ..+++++++++|||||++++.+.
T Consensus 198 ---~~d--~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 ---AEP--KRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---CSC--HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---ccC--HHHHHHHHHHHcCCCcEEEEEcC
Confidence 233 35899999999999999999763
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=118.62 Aligned_cols=112 Identities=13% Similarity=0.223 Sum_probs=87.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-------CC--------CCCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA-------PS--------IPEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-------~~--------~~~i~~~~g 116 (244)
+..+++.++ ..+..+|||+|||+|.++..+++..+..+ ++++|+ +.+++.| ++ ..+++++.+
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~-V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 345666666 77889999999999999999999887667 999999 8887776 43 258999987
Q ss_pred CCCC-C--C----CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 117 DMFK-S--I----HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 117 d~~~-~--~----p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|.+. + + ..+|+|++.++++. ++....|+++.+.|||||++++.+...+..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred CccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 6543 2 2 22599998877632 345678999999999999999998776654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-14 Score=114.16 Aligned_cols=98 Identities=9% Similarity=0.001 Sum_probs=77.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~--~D~v~~~ 131 (244)
+..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.++++ .++.++.+|+.+. ++. .|.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~-v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCe-EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 457999999999999999999999999 999999 9999887643 6799999998653 444 3888877
Q ss_pred cccccCCHHHH------HHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTWTDDEC------KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~~~~~~------~~~l~~~~~~L~pgG~lii~d 163 (244)
+.......... ..++++++++|||||++++..
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 44332222111 258999999999999999865
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=112.43 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=88.6
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeC-CCC----CCCCc--c
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGG-DMF----KSIHV--V 125 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~g-d~~----~~~p~--~ 125 (244)
.+++.++......+|||||||||.++..+++... .+ ++++|+ +.|++.+++. +++..... ++. ++++. .
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~-~~-V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA-KL-VYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-SE-EEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC-CE-EEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 3444554123456999999999999999998732 36 999999 8998876543 44332211 110 11221 2
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch-HHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
|.+.+..++.++ ..+|++++++|||||++++.- .+.-.... .........+. .....+.+++.+
T Consensus 105 d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~--------~~~~~~~~~l~~ 169 (232)
T 3opn_A 105 SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDP--------KVHQMTIEKVLK 169 (232)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCH--------HHHHHHHHHHHH
T ss_pred CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCc--------chhHHHHHHHHH
Confidence 444444444433 478999999999999999852 11000000 00000000011 112246889999
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
+++++||++..+...+
T Consensus 170 ~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 170 TATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEEcc
Confidence 9999999999887653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=106.76 Aligned_cols=114 Identities=16% Similarity=0.048 Sum_probs=86.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-C---Cc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-I---HV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~---p~--~D~v~~~~~ 133 (244)
.+++.+|||+|||+ - . +|. +.|++.++++ .++++..+|+.+. . +. .|+|++.++
T Consensus 10 ~~~g~~vL~~~~g~--------------v-~--vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 72 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------S-P--VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV 72 (176)
T ss_dssp CCTTSEEEEEECTT--------------S-C--HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEecCCc--------------e-e--eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh
Confidence 67889999999986 1 2 788 9999988764 4699999998654 3 43 499999999
Q ss_pred cccC-CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 134 LTTW-TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 134 lh~~-~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
+||+ ++. ..++++++++|||||++++.+....... .....++.++|.++++++||
T Consensus 73 l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 73 PGSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD---------------------NNSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC---------------------SSSSSCCHHHHHHHHHHTTC-
T ss_pred hhhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc---------------------cccccCCHHHHHHHHHHCCC-
Confidence 9999 654 5899999999999999999654322110 01112578999999999999
Q ss_pred eEEEEE
Q 041308 213 HLRAFI 218 (244)
Q Consensus 213 ~~~~~~ 218 (244)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 44 544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=110.53 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=98.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
..++..++ +.+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ +++++..+|+.+. ++
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGL-VESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 35667776 778899999999999999999998 67778 999999 9998888753 6899999999876 66
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++. .++. ..+++++.++|+|||++++..... . ...+
T Consensus 164 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~------~------------------------~~~~ 206 (258)
T 2pwy_A 164 EAAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNI------T------------------------QVLE 206 (258)
T ss_dssp TTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCH------H------------------------HHHH
T ss_pred CCCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCH------H------------------------HHHH
Confidence 4 4999872 3333 378999999999999999977421 0 0234
Q ss_pred HHHHHHhCCCCeEEEEE
Q 041308 202 FKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~ 218 (244)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 56677789998777654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=123.28 Aligned_cols=106 Identities=15% Similarity=0.039 Sum_probs=86.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCC-CCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFK-SIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~-~~p~ 124 (244)
.+.+++.+. ..+..+|||||||+|.++..+++ .+..+ ++++|+..+++.|++. ++++++.+|+.+ +++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~-V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCE-EEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 344566554 45568999999999999998887 46667 9999994488777642 689999999987 3555
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.|+|++..+++|+.+++....+.++++.|||||++++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5999998888888777777888999999999999985
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=108.68 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=76.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~ 132 (244)
+..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.|+++ ++++++.+|+.+. ++. .|.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCC-EEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 457999999999999999999999999 999999 9999888752 6899999998752 444 38887654
Q ss_pred ccccCCHH------HHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTDD------ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+.... ....+++++.++|||||.+++..
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 33221110 02478999999999999999854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-13 Score=110.42 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=84.9
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHH--cCCCCeEEEeec-hHHHHhCCCC---C-------C------------
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQK--HCFICEGINFDL-PEVVAKAPSI---P-------E------------ 110 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~~D~-~~~i~~a~~~---~-------~------------ 110 (244)
+++.+. ..+..+|||+|||+|.++..+++. .+..+ ++++|+ +.+++.|+++ . +
T Consensus 43 ~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~-v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 43 ALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQ-VIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEE-EEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCe-EEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 444443 335579999999999999999988 67777 999999 9999988742 2 2
Q ss_pred -------------ee-------------EEeCCCCCCC------Cc--ceEEEeccccccCCH-------HHHHHHHHHH
Q 041308 111 -------------VT-------------HIGGDMFKSI------HV--VDAIFMKWVLTTWTD-------DECKLIMENY 149 (244)
Q Consensus 111 -------------i~-------------~~~gd~~~~~------p~--~D~v~~~~~lh~~~~-------~~~~~~l~~~ 149 (244)
++ +..+|+++.. +. .|+|+++..+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998865 33 499999877665543 5567899999
Q ss_pred HHHcCCCCEEEEeccc
Q 041308 150 YKALLAGRKLIACEPV 165 (244)
Q Consensus 150 ~~~L~pgG~lii~d~~ 165 (244)
.++|+|||++++++..
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999996543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=110.84 Aligned_cols=121 Identities=14% Similarity=0.026 Sum_probs=94.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+++.+|||+|||+|.++..+++..+. + ++++|+ +.+++.++++ .+++++.+|+.+..+. .|+|++..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~-V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~ 200 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-K-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-E-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-E-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECC
Confidence 345789999999999999999998876 7 999999 9999888753 4599999999886443 59998864
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
..+ ...+++++.++|+|||++++.+....... .....+++.+.++++||+
T Consensus 201 p~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 201 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCE
T ss_pred chh------HHHHHHHHHHHCCCCeEEEEEEeeccccc------------------------cccHHHHHHHHHHHcCCe
Confidence 422 24789999999999999999876421110 012356778999999998
Q ss_pred eEE
Q 041308 213 HLR 215 (244)
Q Consensus 213 ~~~ 215 (244)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 776
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=107.51 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=83.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
...+++.++ .++..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ +++++..+|..+..+.
T Consensus 66 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 66 VARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQH-VCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 344666666 677899999999999999999988 456 999999 9999888753 5799999999876432
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|++...+|++++ ++.+.|||||++++.-..
T Consensus 142 ~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 499999999999886 478899999999997553
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=113.15 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=98.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
+..+|||||||+|.++..+++. ..+ ++++|+ +.+++.+++...-.++.+|+.+. ++. .|+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCe-EEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 5689999999999999999987 356 999999 99999887642223888998764 443 4999998877666433
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh-hhhcccHhh--hh-hhcc--------CceecCHHHHHHHHHh
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR-ALLEGDIFV--MT-IYRA--------KGKHKTEQEFKQLGFS 208 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~-~~~~~d~~~--~~-~~~~--------~~~~~t~~e~~~ll~~ 208 (244)
...+|++++++|||||++++........ .... ....+.... .. .... ....++.+++.++
T Consensus 131 -~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 202 (260)
T 2avn_A 131 -KDKAFSEIRRVLVPDGLLIATVDNFYTF----LQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL--- 202 (260)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEBHHHH----HHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---
T ss_pred -HHHHHHHHHHHcCCCeEEEEEeCChHHH----HHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---
Confidence 5689999999999999999876532100 0000 000000000 00 0000 0124688888888
Q ss_pred CCCCeEEEEEccce
Q 041308 209 TGFPHLRAFISIIF 222 (244)
Q Consensus 209 aGf~~~~~~~~~~~ 222 (244)
+||+++++......
T Consensus 203 aGf~~~~~~~~~~~ 216 (260)
T 2avn_A 203 EGFETVDIRGIGVM 216 (260)
T ss_dssp TTEEEEEEEEECSS
T ss_pred cCceEEEEECCCCc
Confidence 99999998876543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=110.65 Aligned_cols=139 Identities=8% Similarity=-0.079 Sum_probs=106.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
.++.+|||+|||+|-++..+....|..+ ++++|+ +.+++.++++ .+.++...|+....|. +|++++..++|
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~-y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETV-YIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCE-EEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence 4578999999999999999999889999 999999 9999998864 5688899999887444 49999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc--cCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
|+.+++....+ ++.++|+|+|.++..+. +..... .++.+ -.+.|++.+.+.|...
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~----------gm~~~------------Y~~~~e~~~~~~g~~~ 266 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSK----------GMFQN------------YSQSFESQARERSCRI 266 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEECC-----------------CHHHH------------HHHHHHHHHHHHTCCE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCc----------chhhH------------HHHHHHHHHHhcCCce
Confidence 99988776777 89999999999998876 222211 11111 1568899999999955
Q ss_pred EEEEEccceeEEEe
Q 041308 214 LRAFISIIFTLFLS 227 (244)
Q Consensus 214 ~~~~~~~~~~~~~~ 227 (244)
.+. .+++-..+++
T Consensus 267 ~~~-~~~nEl~y~i 279 (281)
T 3lcv_B 267 QRL-EIGNELIYVI 279 (281)
T ss_dssp EEE-EETTEEEEEE
T ss_pred eee-eecCeeEEEe
Confidence 444 4444333443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-13 Score=113.63 Aligned_cols=122 Identities=13% Similarity=-0.036 Sum_probs=94.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C-----CcceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I-----HVVDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~-----p~~D~v~ 129 (244)
..+..+|||||||+|..+..++..+|+.+ ++++|. +.+++.++++ .+++++.+|+.+. . ...|+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELE-LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 35678999999999999999999999999 999999 9999888863 5799999998653 2 1259999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
++.+- + ...+++.+.+.|||||++++........ ...++...+++.
T Consensus 157 s~a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~~----------------------------e~~~~~~~l~~~ 202 (249)
T 3g89_A 157 ARAVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVEE----------------------------ELAPLPPALERL 202 (249)
T ss_dssp EESSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCHH----------------------------HHTTHHHHHHHH
T ss_pred ECCcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcHH----------------------------HHHHHHHHHHHc
Confidence 87542 2 2478999999999999999866321100 023456777889
Q ss_pred CCCeEEEEEc
Q 041308 210 GFPHLRAFIS 219 (244)
Q Consensus 210 Gf~~~~~~~~ 219 (244)
||+..++..+
T Consensus 203 G~~~~~~~~~ 212 (249)
T 3g89_A 203 GGRLGEVLAL 212 (249)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 9999888765
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=105.11 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=96.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~ 131 (244)
.+++.+|||||||+|.++..+++.+|..+ ++++|+ +.+++.|+++ +++++..+|.++.++. .|+|++.
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKS-AIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIA 91 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEc
Confidence 34568999999999999999999988888 999999 9999998864 5799999999988653 5988876
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.+- -+....++.++.+.|+|+|++++.-. ...+.++++|.+.||
T Consensus 92 G~G----g~~i~~Il~~~~~~L~~~~~lVlq~~--------------------------------~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 92 GMG----GRLIARILEEGLGKLANVERLILQPN--------------------------------NREDDLRIWLQDHGF 135 (225)
T ss_dssp EEC----HHHHHHHHHHTGGGCTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTE
T ss_pred CCC----hHHHHHHHHHHHHHhCCCCEEEEECC--------------------------------CCHHHHHHHHHHCCC
Confidence 553 24457899999999999999887221 025577999999999
Q ss_pred CeEEEE
Q 041308 212 PHLRAF 217 (244)
Q Consensus 212 ~~~~~~ 217 (244)
.+++..
T Consensus 136 ~i~~e~ 141 (225)
T 3kr9_A 136 QIVAES 141 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999865
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-13 Score=107.38 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=84.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-V 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-~ 124 (244)
..+++.+. ..+..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.++++ +++++..+|+.+.++ .
T Consensus 67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 144 (215)
T 2yxe_A 67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGL-VVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL 144 (215)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence 34566665 6777899999999999999999987 5567 999999 9999888753 579999999866655 2
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++..++|++++ ++.+.|||||++++...
T Consensus 145 ~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 145 APYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred CCeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 499999999999873 67889999999999754
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-13 Score=113.18 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CC---cceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IH---VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p---~~D~ 127 (244)
..+..+|||||||+|..+..+++..| ..+ ++++|+ +.+++.++++ ++++++.+|+.+. ++ ..|+
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 34568999999999999999999988 678 999999 9999888753 5899999998653 22 3599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|++... ......+++++.+.|||||++++.+...
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 140 IFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 987543 2334678999999999999999866544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=103.94 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=93.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--c
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--V 125 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~ 125 (244)
.+++.++ ..+..+|||+|||+|.++..+++ +..+ ++++|. +.+++.++++ +++++..+|+.++++. .
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKF-VYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSE-EEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCe-EEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 3444444 56678999999999999999998 6677 999999 9999888764 5899999999776554 5
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++..+ + ....+++++.+. |||++++.+... .+..++.++
T Consensus 102 D~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~------------------------------~~~~~~~~~ 143 (183)
T 2yxd_A 102 NKAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVL------------------------------ENAAKIINE 143 (183)
T ss_dssp SEEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCH------------------------------HHHHHHHHH
T ss_pred cEEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEeccc------------------------------ccHHHHHHH
Confidence 99999887 2 235788999888 999999976411 013457888
Q ss_pred HHhCCCCeEEE
Q 041308 206 GFSTGFPHLRA 216 (244)
Q Consensus 206 l~~aGf~~~~~ 216 (244)
++++||.+..+
T Consensus 144 l~~~g~~~~~~ 154 (183)
T 2yxd_A 144 FESRGYNVDAV 154 (183)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCeEEEE
Confidence 99999876655
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-13 Score=109.20 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=94.3
Q ss_pred CC-CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc--ceEE
Q 041308 63 FK-GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV--VDAI 128 (244)
Q Consensus 63 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~--~D~v 128 (244)
.+ +..+|||+|||+|.++..++++.+. + ++++|+ +.+++.++++ ++++++.+|+.+. ++. .|+|
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~-v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-K-IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-E-EEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-c-EEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 56 6789999999999999999998765 7 999999 9999888763 4799999999765 223 4999
Q ss_pred EeccccccC------------------CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh
Q 041308 129 FMKWVLTTW------------------TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY 190 (244)
Q Consensus 129 ~~~~~lh~~------------------~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~ 190 (244)
+++..++.. .......+++++.+.|||||+++++.. ..
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~--------------------- 179 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---PE--------------------- 179 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---TT---------------------
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---HH---------------------
Confidence 997554332 112345799999999999999999531 11
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
...++.+++++.||....+..+
T Consensus 180 -------~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 180 -------RLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -------THHHHHHHHHHTTEEEEEEEEE
T ss_pred -------HHHHHHHHHHHCCCceEEEEEe
Confidence 1445677888899998887665
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-13 Score=101.16 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=81.0
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC---------CCc-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS---------IHV- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~---------~p~- 124 (244)
+++.+...++..+|||+|||+|.++..+++.. |+.+ ++++|...+++ ..++++..+|+.+. ++.
T Consensus 13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCe-EEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 44444324567899999999999999999985 6678 99999933543 27899999999764 343
Q ss_pred -ceEEEeccccccCCHHH---------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 -VDAIFMKWVLTTWTDDE---------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~---------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...+|+..... ...+++++.++|+|||++++...
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 49999998888765431 15889999999999999998765
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=108.68 Aligned_cols=99 Identities=10% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC------------CCCCeeEEeCCCCCC----CCc--
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP------------SIPEVTHIGGDMFKS----IHV-- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~------------~~~~i~~~~gd~~~~----~p~-- 124 (244)
.+..+|||||||+|.++..+++.+|+.. ++++|+ +.|++.|+ ...++.++.+|+.+. ++.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTL-ILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSE-EEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 4557999999999999999999999988 999999 88987653 236899999999874 333
Q ss_pred ceEEEeccccccCCHH--H----HHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDD--E----CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~--~----~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|.|++...-.+.... . ...+++++.++|||||.|++..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 3888765432221100 0 0368999999999999999864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=111.64 Aligned_cols=126 Identities=19% Similarity=0.185 Sum_probs=97.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
..++..++ +.+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ +++++..+|+.+.++.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34666666 777889999999999999999998 67888 999999 9999888753 5799999999877654
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++. .++. ..+++++.++|+|||++++.+.... ..+++
T Consensus 180 ~~~D~V~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~------------------------------~~~~~ 222 (277)
T 1o54_A 180 KDVDALFLD-----VPDP--WNYIDKCWEALKGGGRFATVCPTTN------------------------------QVQET 222 (277)
T ss_dssp CSEEEEEEC-----CSCG--GGTHHHHHHHEEEEEEEEEEESSHH------------------------------HHHHH
T ss_pred CccCEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCCHH------------------------------HHHHH
Confidence 5999873 3333 3789999999999999999764210 02345
Q ss_pred HHHHHhCCCCeEEEEE
Q 041308 203 KQLGFSTGFPHLRAFI 218 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~ 218 (244)
.+.++++||..+++..
T Consensus 223 ~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 223 LKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHSSEEEEEEEC
T ss_pred HHHHHHCCCceeEEEE
Confidence 6667788888777644
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=101.20 Aligned_cols=103 Identities=21% Similarity=0.181 Sum_probs=77.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcC--CCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCC-----------
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC--FICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSI----------- 122 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~----------- 122 (244)
+.+.+..+++..+|||+|||+|.++..++++.| ..+ ++++|+..+ ...++++++.+|+.+..
T Consensus 13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNK-IIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEE-EEEEESSCC----CCCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCce-EEEEeCCcc----CCCCCceEEEccccchhhhhhccccccc
Confidence 444444346678999999999999999999987 578 999999433 12368999999997642
Q ss_pred ---------------Cc--ceEEEeccccccCC----HHH-----HHHHHHHHHHHcCCCCEEEEec
Q 041308 123 ---------------HV--VDAIFMKWVLTTWT----DDE-----CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 123 ---------------p~--~D~v~~~~~lh~~~----~~~-----~~~~l~~~~~~L~pgG~lii~d 163 (244)
+. .|+|++...+|+.. +.. ...+++++.++|||||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 32 49999988777532 211 1248999999999999999844
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=107.70 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=79.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC--------cc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH--------VV 125 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p--------~~ 125 (244)
..+..+|||||||+|..+..+++..| +.+ ++++|+ +.+++.++++ .+++++.+|+.+.++ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGR-VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 34568999999999999999999988 678 999999 9999888753 469999999866422 25
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+|++.... .....+++++.+.|+|||.+++.+....
T Consensus 135 D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 135 DFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp SEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred CEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 999876542 2345889999999999998888666543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=104.13 Aligned_cols=130 Identities=15% Similarity=0.042 Sum_probs=101.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~ 131 (244)
.+++.+|+|||||+|.++..+++.+|..+ ++++|+ +.+++.|+++ +++++..+|.++.++. .|+|++.
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDF-AIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence 34668999999999999999999988778 999999 9999999864 5799999999987543 5998876
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.+.- +....++.+..+.|+++|+|++.-. ...+++++|+.+.||
T Consensus 98 GmGg----~lI~~IL~~~~~~l~~~~~lIlqp~--------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 98 GMGG----RLIADILNNDIDKLQHVKTLVLQPN--------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp EECH----HHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTE
T ss_pred CCch----HHHHHHHHHHHHHhCcCCEEEEECC--------------------------------CChHHHHHHHHHCCC
Confidence 6542 4567889999999999999987321 116678999999999
Q ss_pred CeEEEEEc---cceeEEEeec
Q 041308 212 PHLRAFIS---IIFTLFLSSK 229 (244)
Q Consensus 212 ~~~~~~~~---~~~~~~~~~~ 229 (244)
.+.+..-+ ...+-++.++
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 99987543 2334444443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-13 Score=116.17 Aligned_cols=106 Identities=14% Similarity=0.032 Sum_probs=85.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~- 124 (244)
+.+++.+. ..+..+|||||||+|.++..+++. +..+ ++++|...+++.+++. ++++++.+|+.+. ++.
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCE-EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 34555554 456789999999999999999876 4457 9999994477766642 6899999999774 554
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++..+++|+..+.....+.++++.|||||++++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 59999999998888776678889999999999999854
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-13 Score=106.41 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=82.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCCCCc---
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKSIHV--- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~~p~--- 124 (244)
...+++.+. ..+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ .+++++.+|+.+.++.
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CE-EEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence 345666665 6777899999999999999999886 56 999999 9999888754 2799999999775442
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++..++||+.+ ++.+.|+|||++++...
T Consensus 135 fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIG 166 (231)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred ccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence 499999999999874 57889999999999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=105.71 Aligned_cols=94 Identities=18% Similarity=0.078 Sum_probs=76.9
Q ss_pred CcceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC--CC---c--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS--IH---V--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~--~p---~--~D~v~~~ 131 (244)
+..+|||||||+|..+..+++. .|..+ ++++|+ +.+++.|+.. ++++++.+|..+. ++ . .|+|++.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~-V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCE-EEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 3579999999999999999987 67788 999999 9998888743 7899999999873 22 2 4998876
Q ss_pred cccccCCHHHHHHHHHHHHH-HcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYK-ALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~-~L~pgG~lii~d~ 164 (244)
.. |. +...+|+++.+ .|||||++++.+.
T Consensus 160 ~~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 160 NA-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SS-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred Cc-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 54 42 23578999997 9999999999765
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=102.51 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=80.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-c-ceEEEec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH-V-VDAIFMK 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p-~-~D~v~~~ 131 (244)
.+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+. ++ . .|+|++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAAS-VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSE-EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEEC
Confidence 34689999999999999988875 4456 999999 9999988864 5899999998664 22 2 5999998
Q ss_pred cccccCCHHHHHHHHHHHHH--HcCCCCEEEEecccC
Q 041308 132 WVLTTWTDDECKLIMENYYK--ALLAGRKLIACEPVL 166 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d~~~ 166 (244)
..+|+. .++..++++++.+ +|+|||++++.....
T Consensus 121 ~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 121 PPYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 887654 3456789999999 999999999976543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=111.21 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=84.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH- 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p- 123 (244)
...+++.++ .+++.+|||+|||+|.++..+++..+ ..+ ++++|+ +.+++.++++ +++++..+|+.+..+
T Consensus 64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 445666666 67789999999999999999999887 477 999999 9999888753 569999999977543
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+|++..++||+. +++.+.|||||++++...
T Consensus 142 ~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred CCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 2 49999999999987 457789999999999754
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.9e-13 Score=107.07 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=83.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
...+++.++ ..+..+|||+|||+|.++..+++..+ .+ ++++|. +.+++.++++ .++++..+|...+++.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 444666665 67788999999999999999999987 67 999999 9999888753 5799999998555554
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...++++.+ ++.+.|+|||++++.-.
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 499999999998874 57889999999998654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.6e-13 Score=107.90 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=79.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC---------Ccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI---------HVV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~---------p~~ 125 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|+ +.+++.|+++ ++++++.+|+.+.+ ...
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQ-VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCE-EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 3568999999999999999999886 678 999999 8888888753 58999999987642 225
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
|+|++... ......+++++.+.|||||.+++-+.....
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 99987654 233457899999999999999997766543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-13 Score=108.04 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=79.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CC------cc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IH------VV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p------~~ 125 (244)
.+..+|||+|||+|..+..+++..+ +.+ ++++|+ +.+++.++++ ++++++.+|+.+. ++ ..
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 4568999999999999999999765 677 999999 9999988863 4799999997442 33 25
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|+|++....+++.+. ..+++.+ +.|||||++++.+...
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCCC
Confidence 999998877775433 4677777 9999999999866653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=107.83 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=78.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC--------CC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS--------IH 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~--------~p 123 (244)
..+..+|||+|||+|.++..++++.|..+ ++++|+ +.+++.++++ ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~-v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAE-VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEE-EEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 55678999999999999999999999888 999999 9988877642 2599999999875 23
Q ss_pred c--ceEEEecccccc----------------CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 124 V--VDAIFMKWVLTT----------------WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 124 ~--~D~v~~~~~lh~----------------~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
. .|+|+++..++. ........+++++.+.|||||+++++.
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 499999733322 122224678999999999999999853
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-13 Score=114.15 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=76.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
..+..+|||||||+|.++..+++. +..+ ++++|..++++.|++. ++++++.+|+.+. +|. .|+|++..
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~-v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCE-EEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 345689999999999999999987 4557 9999995588877752 4599999999875 663 49999877
Q ss_pred ccccCC-HHHHHHHHHHHHHHcCCCCEEEE
Q 041308 133 VLTTWT-DDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 133 ~lh~~~-~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+.+++. .+....+++++.++|||||+++.
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 654432 23345789999999999999874
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-13 Score=108.06 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=73.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC--------------CCCeeEEeCCCCCCCC----c
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS--------------IPEVTHIGGDMFKSIH----V 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~--------------~~~i~~~~gd~~~~~p----~ 124 (244)
++..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++ .+++.++.+|+++.++ .
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSE-EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCC-EEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 4568999999999999999999999888 999999 888876642 2689999999987543 2
Q ss_pred --ceEEEeccccccCCHHHH-----------HHHHHHHHHHcCCCCEEEEe
Q 041308 125 --VDAIFMKWVLTTWTDDEC-----------KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~-----------~~~l~~~~~~L~pgG~lii~ 162 (244)
.|.|++. ++++.. ..+++++.++|+|||+|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 2666633 232211 37899999999999999985
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-13 Score=104.45 Aligned_cols=91 Identities=10% Similarity=-0.034 Sum_probs=76.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~lh~ 136 (244)
..+|||+|||+|.++..+++..|..+ ++++|. +.+++.++++ .++++..+|+.+..+. .|+|++..+ ++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~ 143 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS 143 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC
Confidence 57999999999999999999999888 999999 9998888752 4599999999776433 499997543 22
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+++++.+.|+|||++++..
T Consensus 144 -----~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 144 -----LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEe
Confidence 3488999999999999999863
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=104.05 Aligned_cols=144 Identities=12% Similarity=0.061 Sum_probs=98.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC---C-Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS---I-HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~---~-p~-~D~v~ 129 (244)
+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.|+++ ++++++.+|+.+. + +. .|+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTT-LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSE-EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 345999999999999999999875 677 999999 9999888753 4799999998654 3 22 49998
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+....+ +...+++++.+.|||||.+++-+.........+. ..+.. .....++.+.+.+.
T Consensus 135 ~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~------~~~~~----------~~~~~~~~~~l~~~ 193 (221)
T 3dr5_A 135 GQVSPM-----DLKALVDAAWPLLRRGGALVLADALLDGTIADQT------RKDRD----------TQAARDADEYIRSI 193 (221)
T ss_dssp ECCCTT-----THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSS------CCCHH----------HHHHHHHHHHHTTC
T ss_pred EcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCC------CCChH----------HHHHHHHHHHHhhC
Confidence 765432 2356899999999999999986655432210000 00000 00134566666543
Q ss_pred CCCeEEEEEccceeEEEeecCch
Q 041308 210 GFPHLRAFISIIFTLFLSSKSNF 232 (244)
Q Consensus 210 Gf~~~~~~~~~~~~~~~~~~~~~ 232 (244)
..++..-++.+.++.++++..
T Consensus 194 --~~~~~~~lp~gdGl~~~~~~~ 214 (221)
T 3dr5_A 194 --EGAHVARLPLGAGLTVVTKAL 214 (221)
T ss_dssp --TTEEEEEESSTTCEEEEEECC
T ss_pred --CCeeEEEeeccchHHHHHHHH
Confidence 455566667677777776654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-12 Score=102.29 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=101.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~ 131 (244)
.+++.+|||||||+|.++..+++..|..+ ++++|+ +.+++.|+++ +++++..+|.++.++. .|+|++.
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASF-AIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence 35668999999999999999999988778 999999 9999999864 5799999999987542 5998876
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.+. -+....++.+..+.|+++++|++.-. ...+.+++++.+.||
T Consensus 98 gmG----g~lI~~IL~~~~~~L~~~~~lIlq~~--------------------------------~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 98 GMG----GTLIRTILEEGAAKLAGVTKLILQPN--------------------------------IAAWQLREWSEQNNW 141 (244)
T ss_dssp EEC----HHHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHHTE
T ss_pred CCc----hHHHHHHHHHHHHHhCCCCEEEEEcC--------------------------------CChHHHHHHHHHCCC
Confidence 543 24567889999999999999998321 025678999999999
Q ss_pred CeEEEEE---ccceeEEEeec
Q 041308 212 PHLRAFI---SIIFTLFLSSK 229 (244)
Q Consensus 212 ~~~~~~~---~~~~~~~~~~~ 229 (244)
.+.+..- -...+-++.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 9877543 33344444443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.8e-13 Score=106.71 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC----c-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH----V-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p----~-~D~v~ 129 (244)
..+..+|||+|||+|..+..+++..|..+ ++++|+ +.+++.++++ ++++++.+|+.+.++ . .|+|+
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 147 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIH-VTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF 147 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence 34568999999999999999999888888 999999 9999988763 489999999987655 2 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+.... .....+++++.+.|||||++++-+...
T Consensus 148 ~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 148 IDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp EETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 66432 224578999999999999998855543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-12 Score=111.27 Aligned_cols=97 Identities=10% Similarity=0.026 Sum_probs=81.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCC-C--cceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSI-H--VVDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~-p--~~D~v~~~~~lh 135 (244)
+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.++++ .+++++.+|+.+.. + ..|+|++...+|
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~-V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAE-VVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCE-EEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 4579999999999999999987 357 999999 9999988864 35899999998863 3 259999999998
Q ss_pred c---CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 T---WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~---~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ...+....+++++.+.|||||+++++..
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 7 4455667899999999999999999753
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=105.25 Aligned_cols=99 Identities=11% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC-----Cc-ceEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI-----HV-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~-----p~-~D~v 128 (244)
..+..+|||+|||+|..+..+++..|..+ ++++|. +.+++.++++ .++++..+|+.+.+ +. .|+|
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEAT-IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL 130 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence 34568999999999999999999998888 999999 9999888753 47999999997742 22 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++....+ ....+++++.+.|+|||++++.+....
T Consensus 131 ~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 131 FIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp EEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred EECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 9877654 235789999999999999999766543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=101.38 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=79.9
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC---C
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI---H 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~---p 123 (244)
.+++.+....+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+.+ +
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSA-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCE-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 34443322345689999999999999999987 5567 999999 9999888753 47999999987632 2
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHH--HHcCCCCEEEEecccC
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYY--KALLAGRKLIACEPVL 166 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~d~~~ 166 (244)
. .|+|++...+|. .....+++.+. ++|+|||++++.....
T Consensus 99 ~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 99 GRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 2 599999877643 23346677776 9999999999876543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=109.03 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=78.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+... ..+..+|||||||+|.++..+++. +..+ ++++|...+++.++++ ++++++.+|+.+. ++.
T Consensus 54 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 54 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCE-EEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 34555444 556789999999999999999987 3446 9999994488887753 6899999999874 653
Q ss_pred -ceEEEeccc---cccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 125 -VDAIFMKWV---LTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 125 -~D~v~~~~~---lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
.|+|++..+ +++.. ....+++++.++|||||+++
T Consensus 131 ~~D~Ivs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEEEEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 599998763 44433 34578999999999999997
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-13 Score=105.93 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=78.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC---------Ccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI---------HVV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~---------p~~ 125 (244)
.+..+|||+|||+|..+..+++..| ..+ ++++|. +.+++.++++ .+++++.+|..+.+ ...
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGT-LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 3568999999999999999999887 677 999999 9999888753 56999999986542 235
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+|++... ......+++++.+.|||||++++.+....
T Consensus 142 D~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99986543 23346789999999999999998776543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=112.34 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-c
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~ 125 (244)
.+.+... ..+..+|||||||+|.++..+++... .+ ++++|...|++.+++. .+++++.+|+.+. ++. .
T Consensus 54 ~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g~-~~-V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 130 (376)
T 3r0q_C 54 AVFQNKH-HFEGKTVLDVGTGSGILAIWSAQAGA-RK-VYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKV 130 (376)
T ss_dssp HHHTTTT-TTTTCEEEEESCTTTHHHHHHHHTTC-SE-EEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred HHHhccc-cCCCCEEEEeccCcCHHHHHHHhcCC-CE-EEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence 3444444 56678999999999999999998743 36 9999997777777652 5699999999765 554 5
Q ss_pred eEEEeccccccCCH-HHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 126 DAIFMKWVLTTWTD-DECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 126 D~v~~~~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+|++..+.|++.. .....+++++.+.|||||.+++.+..
T Consensus 131 D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 131 DVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp EEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred eEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 99999776666543 23567899999999999999876543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=111.45 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=74.7
Q ss_pred CcceEEEEcCC------ccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CC-------c-ceE
Q 041308 65 GVKRLVDVGGS------AGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IH-------V-VDA 127 (244)
Q Consensus 65 ~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p-------~-~D~ 127 (244)
+..+||||||| +|..+..++++ +|+.+ ++++|+ +.|. ...++++++.+|+.+. ++ . .|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~-V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ-IYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE-EEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 45899999999 77777777765 58888 999999 7774 2347999999999774 33 2 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|++. ..|++. +..+.|++++++|||||++++.|..
T Consensus 292 Visd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9876 456543 3568999999999999999998875
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.6e-12 Score=97.72 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=75.3
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHcCC---------CCeEEEeechHHHHhCCCCCCeeEE-eCCCCCC-----
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF---------ICEGINFDLPEVVAKAPSIPEVTHI-GGDMFKS----- 121 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~~D~~~~i~~a~~~~~i~~~-~gd~~~~----- 121 (244)
.+.+..+++..+|||+|||+|.++..+++..+. .+ ++++|+..+ ...+++++. .+|+.+.
T Consensus 14 ~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~-v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 14 NERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGF-VLGVDLLHI----FPLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp HHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCE-EEEECSSCC----CCCTTCEEECSCCTTSHHHHHH
T ss_pred HHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCce-EEEEechhc----ccCCCCeEEEeccCCCHHHHHH
Confidence 333433566789999999999999999999764 67 999999432 223678999 9998653
Q ss_pred ----CCc--ceEEEecccccc----CCHHH-----HHHHHHHHHHHcCCCCEEEEecc
Q 041308 122 ----IHV--VDAIFMKWVLTT----WTDDE-----CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 ----~p~--~D~v~~~~~lh~----~~~~~-----~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++. .|+|++...+|. ..+.. ...+++++.++|||||++++...
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 499998654432 22221 14789999999999999998765
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=105.97 Aligned_cols=96 Identities=9% Similarity=-0.075 Sum_probs=79.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-----ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-----VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-----~D~v~~~~ 132 (244)
++.+|||+| |+|.++..+++..|..+ ++++|+ +.+++.++++ .+++++.+|+.+.+|. .|+|++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~-v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKR-IAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSE-EEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 458999999 99999999999888778 999999 9999998864 3899999999885542 49999987
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.++.. ....+++++.++|||||++++.+..
T Consensus 250 p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 76643 2468999999999999976555543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=106.71 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=75.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC-cc---eEEEec-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH-VV---DAIFMK- 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p-~~---D~v~~~- 131 (244)
+..+|||+|||+|.++..+++. |..+ ++++|+ +.+++.|+++ .+++++.+|+++.++ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~-v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 4579999999999999999999 8888 999999 9999988863 369999999988654 36 999986
Q ss_pred -----------cccccCCHH------HHHHHHHHHH-HHcCCCCEEEE
Q 041308 132 -----------WVLTTWTDD------ECKLIMENYY-KALLAGRKLIA 161 (244)
Q Consensus 132 -----------~~lh~~~~~------~~~~~l~~~~-~~L~pgG~lii 161 (244)
.+. |-+.. +...+++++. +.|+|||++++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 222 22211 1126899999 99999999997
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-12 Score=109.64 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=77.9
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKWVL 134 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~~l 134 (244)
.+|||||||+|.+++.+++.+|+.+ ++++|+ +.|++.++++ +|++++.+|..+. .+. .|+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~-v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSR-NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCE-EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcE-EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4999999999999999999999998 999999 9999998753 6899999998653 332 5999986544
Q ss_pred ccCCHHH--HHHHHHHHHHHcCCCCEEEEecc
Q 041308 135 TTWTDDE--CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 135 h~~~~~~--~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...... ...++++++++|+|||.+++.-.
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322111 14789999999999999987553
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=106.09 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=82.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKS 121 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~ 121 (244)
...++..++ ..+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ +++++..+|+.+.
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 345666676 778889999999999999999986 46778 999999 9998887642 4799999999765
Q ss_pred -CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 122 -IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 -~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++. .|+|++. .++. ..+++++.++|+|||++++...
T Consensus 166 ~~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence 443 4999872 3332 2789999999999999999765
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=99.63 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=75.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCC------------
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSI------------ 122 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~------------ 122 (244)
++.+.+..+++..+|||+|||+|.++..++++ ..+ ++++|+.++ ...++++++.+|+.+..
T Consensus 15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~-V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARK-IISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSE-EEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCc-EEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 45555554567899999999999999999987 567 999999332 23478999999997751
Q ss_pred --CcceEEEeccccccC----CH-----HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 --HVVDAIFMKWVLTTW----TD-----DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 --p~~D~v~~~~~lh~~----~~-----~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...|+|++....... .+ +....+++.+.++|||||.|++...
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 235999985322111 11 1235789999999999999997554
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.1e-12 Score=100.48 Aligned_cols=140 Identities=10% Similarity=-0.018 Sum_probs=101.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D~v~~~~~lh 135 (244)
.++.+|||||||+|-++..+. |..+ ++++|+ +.+++.+++. .+..+...|.... .|. +|++++..++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~-y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIAS-VWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSE-EEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCe-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 457899999999999999887 7788 999999 9999999864 6788899999876 444 49999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
|+.+.+....+ ++.+.|+|+|.++..+.-.=.. ..+ .++ ..-.+.|++.+ .+.+.+++
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~G-r~~-------gm~------------~~Y~~~~e~~~-~~~~~~~~ 237 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGG-RGK-------GME------------ANYAAWFEGGL-PAEFEIED 237 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEECC-------------------------------CHHHHHHHHS-CTTEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcChHHhcC-CCc-------chh------------hHHHHHHHHHh-hccchhhh
Confidence 99888766666 8999999998888877311111 001 011 01145667776 45566777
Q ss_pred EEEccceeEEEeec
Q 041308 216 AFISIIFTLFLSSK 229 (244)
Q Consensus 216 ~~~~~~~~~~~~~~ 229 (244)
-..++.-..+++.+
T Consensus 238 ~~~~~nEl~~~i~~ 251 (253)
T 3frh_A 238 KKTIGTELIYLIKK 251 (253)
T ss_dssp EEEETTEEEEEEEE
T ss_pred heecCceEEEEEec
Confidence 66666666666554
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-12 Score=104.74 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=77.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEEeccccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~ 138 (244)
.+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.+++. +++.+..+|+.+. ++. .|+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~---- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP---- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----
Confidence 4568999999999999999999887778 999999 9999988764 6889999998653 443 4999986553
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..++++.++|||||++++....
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcC
Confidence 2479999999999999998764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-12 Score=102.17 Aligned_cols=98 Identities=7% Similarity=-0.023 Sum_probs=75.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC------Cc-ceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI------HV-VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~------p~-~D~ 127 (244)
..+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+.. +. .|+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR-GMDK-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 345689999999999999998874 4557 999999 9999988863 47999999987642 22 499
Q ss_pred EEeccccccCCHHHHHHHHHHH--HHHcCCCCEEEEeccc
Q 041308 128 IFMKWVLTTWTDDECKLIMENY--YKALLAGRKLIACEPV 165 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~--~~~L~pgG~lii~d~~ 165 (244)
|++...+|....+ ..++.+ .++|+|||.+++....
T Consensus 120 i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 120 VLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEET
T ss_pred EEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCC
Confidence 9998776643333 445555 8889999999987654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-12 Score=102.03 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=77.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC------CCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCCc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC------FICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p~ 124 (244)
.++..+|||+|||+|.++..+++..+ ..+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCE-EEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence 55678999999999999999998654 257 999999 9999888752 4799999999876554
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...+|++. +++.+.|||||++++.-.
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 49999999998865 567889999999998643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=103.65 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=75.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCC-----Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSI-----HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~-----p~-~D~v~ 129 (244)
+..+|||+|||+|.++..++++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+.. .. .|+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KK-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CE-EEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 357999999999999999887653 46 999999 9999988753 48999999986532 24 69999
Q ss_pred eccccccCCHHHHHHHHHHH--HHHcCCCCEEEEeccc
Q 041308 130 MKWVLTTWTDDECKLIMENY--YKALLAGRKLIACEPV 165 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~--~~~L~pgG~lii~d~~ 165 (244)
+...+| ..+ ...+++.+ .++|+|||.+++....
T Consensus 131 ~~~~~~-~~~--~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 131 LDPPFH-FNL--AEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp ECCCSS-SCH--HHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred ECCCCC-Ccc--HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 987765 333 45778888 5679999999986653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=101.85 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=71.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC--C------CeeEE--eCCCCCCCCc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI--P------EVTHI--GGDMFKSIHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~--~------~i~~~--~gd~~~~~p~-~D~v~~~ 131 (244)
+++..+|||+|||+|.++..+++. .+ ++++|+..|+..+++. . ++.++ .+|+.+.-+. .|+|++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd 147 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PH-VMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCD 147 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TT-EEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---Cc-EEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEe
Confidence 567789999999999999999877 56 9999993364444322 2 68999 8998663222 5999987
Q ss_pred cccccCCHH----H-HHHHHHHHHHHcCCCC--EEEEecc
Q 041308 132 WVLTTWTDD----E-CKLIMENYYKALLAGR--KLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~----~-~~~~l~~~~~~L~pgG--~lii~d~ 164 (244)
.. ++.... . ...+|+.+.++||||| .+++...
T Consensus 148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 66 443221 1 1247899999999999 9988554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-12 Score=106.14 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=82.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC--CC-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS--IH-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~--~p-~ 124 (244)
+...++ ..++.+|||+|||+|..+..+++..+ ..+ ++++|+ +.+++.++++ .+++++.+|+.+. .+ .
T Consensus 110 ~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~-v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 187 (315)
T 1ixk_A 110 PPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE 187 (315)
T ss_dssp HHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccccc
Confidence 344445 66778999999999999999999875 467 999999 9999888753 5799999998664 22 2
Q ss_pred ceEEEec------cccccCC-------HHH-------HHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 125 VDAIFMK------WVLTTWT-------DDE-------CKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 125 ~D~v~~~------~~lh~~~-------~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.|+|++. .++++.+ .++ ...+|+++.+.|||||++++..+...
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 5999973 2233322 221 15899999999999999999776543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-12 Score=103.25 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=77.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---cceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---VVDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---~~D~v~~~~ 132 (244)
+..+|||+|||+|..+..+++..| +.+ ++++|+ +.+++.++++ ++++++.+|..+.++ ..|+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSR-VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 468999999999999999999887 677 999999 9999988853 479999999865322 269998763
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.. .....+++++.+.|||||++++.+....
T Consensus 135 ~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 135 DV-----FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp TT-----SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred Ch-----hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 22 2245789999999999999998665443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-12 Score=98.49 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=73.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCC-------cceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIH-------VVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p-------~~D~v~~~ 131 (244)
+..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ .++++..+|+.+.++ ..|+|++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 4689999999999999999988654 899999 9999988864 279999999876422 35999998
Q ss_pred cccccCCHHHHHHHHHHHH--HHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYY--KALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~d~~ 165 (244)
..+| -..+ .+++.+. ++|+|||.+++....
T Consensus 118 ~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 118 PPYA-MDLA---ALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCC
Confidence 8776 2222 3445555 999999999986653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=101.87 Aligned_cols=103 Identities=8% Similarity=-0.049 Sum_probs=73.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC--C------CeeEE--eCCCCCCCCc-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI--P------EVTHI--GGDMFKSIHV- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~--~------~i~~~--~gd~~~~~p~- 124 (244)
+.+... +++..+|||+|||+|.++..++++ .+ ++++|+..|+..+++. . ++.++ .+|+.+.-+.
T Consensus 74 i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~ 148 (276)
T 2wa2_A 74 IDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PN-VREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQ 148 (276)
T ss_dssp HHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TT-EEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCC
T ss_pred HHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CC-EEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCC
Confidence 444432 567789999999999999999987 46 9999993365444322 2 78999 8998653222
Q ss_pred ceEEEeccccccCCHH----H-HHHHHHHHHHHcCCCC--EEEEecc
Q 041308 125 VDAIFMKWVLTTWTDD----E-CKLIMENYYKALLAGR--KLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~----~-~~~~l~~~~~~L~pgG--~lii~d~ 164 (244)
.|+|++... ++.... . ...+|+++.++||||| .+++...
T Consensus 149 fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 149 ADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred cCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 599999866 443221 1 1247899999999999 9888544
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=101.82 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=70.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-----hHHHHhCCC--C--CCeeEEeC-CCCCCCC-cceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-----PEVVAKAPS--I--PEVTHIGG-DMFKSIH-VVDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----~~~i~~a~~--~--~~i~~~~g-d~~~~~p-~~D~v~~~ 131 (244)
+++..+|||+|||+|.++..++++ .+ ++++|. +.+++..+. . +++.++.+ |+.+.-+ ..|+|++.
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~-V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd 155 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KN-VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCD 155 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TT-EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CC-EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEEC
Confidence 566789999999999999999987 36 999998 544433321 2 57999999 8876422 35999997
Q ss_pred cccc---cCCHHH-HHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLT---TWTDDE-CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh---~~~~~~-~~~~l~~~~~~L~pgG~lii~ 162 (244)
..++ +..+.. ...+|+.+.++|||||.|++.
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6653 222222 225799999999999988874
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-12 Score=108.02 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
.+..+|||||||+|.++..+++. +..+ ++++|...+++.+++. ++++++.+|+.+. +|. .|+|++..+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCE-EEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 34589999999999999999876 4446 9999995578777642 5799999999775 553 599998866
Q ss_pred cccCC-HHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWT-DDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~-~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+++. ......+++++.+.|||||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55433 22345789999999999999973
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=105.79 Aligned_cols=110 Identities=13% Similarity=-0.046 Sum_probs=85.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
+..++.... +++..+|||+|||+|.+++.++... |..+ ++++|+ +.+++.|+++ +++++..+|+.+. .+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~-v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSP-VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSC-EEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCce-EEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 444556565 7888999999999999999999988 8888 999999 9999998864 3799999999764 22
Q ss_pred --cceEEEeccccccCCH--H----HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 --VVDAIFMKWVLTTWTD--D----ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~--~----~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|++....+.... . ....+++++.+.|+|||++++...
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2499998655433111 1 125789999999999999999643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=98.68 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-----CCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCC---
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-----CFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSI--- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~--- 122 (244)
.++..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.++++ .+++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSY-VIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCE-EEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 5567899999999999999999886 4567 999999 9999888753 47999999997754
Q ss_pred -Cc---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 -HV---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 -p~---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+. .|+|++...+|++. +++.+.|+|||++++.-.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 32 49999999998753 677899999999998654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=102.71 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=75.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
++.+|||||||+|.+++.+++..+..+ ++++|+ +.+++.+++ .+|++++.+|..+.+ +. .|+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCce-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 458999999999999999998756667 999999 999988764 268999999987642 22 59999
Q ss_pred eccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 130 MKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 130 ~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
+....+..+... ...++++++++|+|||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 865543222110 147899999999999999985
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-12 Score=103.59 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Cc-
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HV- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~- 124 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.++++ ++++++.+|..+. + +.
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 4568999999999999999999987 677 999999 9999888753 5799999998653 2 12
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++.... .....+++++.+.|||||.+++-+...
T Consensus 157 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 4999976432 224578999999999999999866543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=97.65 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=81.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC-Cc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI-HV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~-p~ 124 (244)
..++..++ ..+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGE-VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 34566666 677889999999999999999988 567 999999 9998888753 68999999998875 54
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++. .++. ..+++++.++|+|||++++...
T Consensus 157 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 157 GIFHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TCBSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEES
T ss_pred CcccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 4999873 2322 3779999999999999999765
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-13 Score=112.20 Aligned_cols=134 Identities=13% Similarity=0.010 Sum_probs=95.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~l 134 (244)
+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+..+. .|+|++...+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MR-VIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 56899999999999999999875 56 999999 9999988763 4899999999765333 4999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
|+..+.. ..+.+++++|+|||.+++........ +... .-......+++..++...|...+
T Consensus 155 ~~~~~~~--~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~-----~lp~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSPDGFEIFRLSKKITN-------------NIVY-----FLPRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEE-----EEETTBCHHHHHHTTCTTCCEEE
T ss_pred CCcchhh--hHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEE-----ECCCCCCHHHHHHHhccCCCEEE
Confidence 9877653 36778999999999966532211000 0000 00122356778888888887666
Q ss_pred EEEEccc
Q 041308 215 RAFISII 221 (244)
Q Consensus 215 ~~~~~~~ 221 (244)
......+
T Consensus 215 ~~~~~~~ 221 (241)
T 3gdh_A 215 EQNFLNN 221 (241)
T ss_dssp EEEEETT
T ss_pred EehhhcC
Confidence 5544433
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=104.25 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=80.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-----------------CCeeEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-----------------PEVTHI 114 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-----------------~~i~~~ 114 (244)
..++..++ ..+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.|+++ .++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34566666 677899999999999999999998 57778 999999 9898887652 579999
Q ss_pred eCCCCCC---CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 115 GGDMFKS---IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 115 ~gd~~~~---~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+|+.+. ++. .|+|++...- + ..+++++.++|+|||++++...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~~-----~--~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDMLN-----P--HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ESCTTCCC-------EEEEEECSSS-----T--TTTHHHHGGGEEEEEEEEEEES
T ss_pred ECChHHcccccCCCCeeEEEECCCC-----H--HHHHHHHHHhcCCCcEEEEEeC
Confidence 9999874 333 4999874321 1 1378999999999999998765
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-12 Score=104.22 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=77.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
++.+++.++ ..+..+|||||||+|.++..+++... + ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 455666666 67778999999999999999999854 5 999999 9998877642 4799999999874 66
Q ss_pred cceEEEeccccccCCHHHHHHHHH--------------HH--HHHcCCCCEEE
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIME--------------NY--YKALLAGRKLI 160 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~--------------~~--~~~L~pgG~li 160 (244)
..|+|+++... ++..+...+++. ++ +++|+|||+++
T Consensus 93 ~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 67998885444 455444445543 33 46999999663
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-12 Score=101.77 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=78.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC-----------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI----------- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~----------- 122 (244)
..+..+|||||||+|..+..+++..| ..+ ++++|. +.+++.++++ .++++..+|..+.+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGK-ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 34568999999999999999999987 567 999999 9999888753 45999999986532
Q ss_pred ---------CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 123 ---------HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 123 ---------p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
...|+|++.... +....+++++.+.|+|||++++.+...
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 225999987543 234578999999999999999876544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-11 Score=95.90 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=76.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCC-c--ce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIH-V--VD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p-~--~D 126 (244)
..+..+|||+|||+|..+..+++.. +..+ ++++|. +.+++.++++ .+++++.+|..+..+ . .|
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence 4567899999999999999999885 5568 999999 9999888642 479999999876533 2 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|++...++++. +++.+.|||||++++...
T Consensus 154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 999998887754 567899999999999754
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-12 Score=103.82 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v 128 (244)
+++.+|||||||+|..++.+++..|..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 4558999999999999999998766778 999999 999988764 268999999986542 23 5999
Q ss_pred EeccccccCCHHHH--HHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDDEC--KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~~~--~~~l~~~~~~L~pgG~lii~ 162 (244)
++....+..+.... ..++++++++|+|||.+++.
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 98654433222221 58899999999999999985
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=102.10 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=73.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------------CCCeeEEeCCCCCCC--Cc-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------------IPEVTHIGGDMFKSI--HV- 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------------~~~i~~~~gd~~~~~--p~- 124 (244)
++.+|||||||+|.+++.+++. +..+ ++++|+ +.+++.|++ .++++++.+|..+.+ +.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~-v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 4589999999999999999988 7778 999999 999887652 367999999975532 22
Q ss_pred ceEEEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++....+.-+... ...++++++++|+|||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 59999876543222121 257899999999999999985
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-12 Score=100.04 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=78.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Cc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HV 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~ 124 (244)
..+..+|||+|||+|..+..+++..| ..+ ++++|. +.+++.++++ ++++++.+|+.+. + ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 34568999999999999999999877 667 999999 9999888753 5899999998653 2 23
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 146 ~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 146 FDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred ccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 599998644 2224578999999999999999877543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-11 Score=105.79 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=76.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D~ 127 (244)
++..+|||||||+|..++.+++..|..+ ++++|+ +.+++.|+++ ++++++.+|+.+. .+. .|+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~-V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4568999999999999999998777778 999999 9999888752 5899999998653 332 599
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++...-+.-..+. ...++++++++|+|||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865421111111 358899999999999999985
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.5e-12 Score=100.63 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=78.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Ccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HVV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~~ 125 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.|+++ +++++..+|..+. + ...
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQ-IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 3467999999999999999999887 567 999999 9999888753 4799999997542 2 235
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+|++.... .+...+++++.+.|+|||++++.+....
T Consensus 150 D~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 150 DLIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred CEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 999876542 3346789999999999999998766543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=100.01 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=77.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Cc-
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HV- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~- 124 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.++++ ++++++.+|..+. + +.
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGK-ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 4568999999999999999999987 677 999999 9999888753 4799999998653 2 22
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++... ......+++++.+.|+|||.+++-+...
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 499987632 2334688999999999999998765543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=93.95 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc-ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~ 139 (244)
..+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ .+++++.+|+.+ ++. .|+|++...+|++.+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAES-VTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSE-EEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccC
Confidence 345689999999999999999987 4446 999999 9999988864 389999999876 444 599999999999876
Q ss_pred HHHHHHHHHHHHHc
Q 041308 140 DECKLIMENYYKAL 153 (244)
Q Consensus 140 ~~~~~~l~~~~~~L 153 (244)
....++++++.+.+
T Consensus 126 ~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 126 HSDRAFIDKAFETS 139 (200)
T ss_dssp --CHHHHHHHHHHE
T ss_pred chhHHHHHHHHHhc
Confidence 55567899999998
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-11 Score=98.94 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCCCcceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSIHVVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~p~~D~v~~~~ 132 (244)
+++.+|||||||+|..++.+++. + .+ ++++|+ +.|++.|+++ ++++++.+|..+.+...|+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~-v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-TH-IDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CE-EEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CE-EEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC
Confidence 34589999999999999999988 7 77 999999 9999999863 479999999876553359999762
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+++. .++++++++|+|||.+++.
T Consensus 148 -----~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 148 -----EPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp -----CCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred -----CChH--HHHHHHHHhcCCCcEEEEE
Confidence 3332 4899999999999999985
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-12 Score=104.83 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v 128 (244)
.+..+|||||||+|.+++.+++..|..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 4568999999999999999998877778 999999 999988774 268999999986532 22 5999
Q ss_pred EeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEec
Q 041308 129 FMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 129 ~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~d 163 (244)
++....+.-+.. ....++++++++|+|||.+++..
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 986554322211 12468999999999999999854
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=101.54 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=80.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC-cceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH-VVDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p-~~D~v~~~~~ 133 (244)
+++..+|||+|||+|.++..+++..+..+ ++++|. +.+++.++++ .++.++.+|+.+. .+ ..|+|++...
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~-V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKL-VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSE-EEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence 56678999999999999999999988778 999999 9999988753 5789999999775 21 2599998765
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
. ....+++++.+.|+|||.+++.....
T Consensus 196 ~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 196 H------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 4 23468899999999999999877643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-11 Score=98.08 Aligned_cols=95 Identities=6% Similarity=-0.049 Sum_probs=73.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC--C--cceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI--H--VVDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~--p--~~D~v~~~~~ 133 (244)
+..+|||+|||+|.++..++++.. .+ ++++|. +.+++.++++ ++++++.+|+.+.+ + ..|+|++...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~-V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AG-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 357999999999999999887753 36 999999 9999988753 48999999986632 2 2599998877
Q ss_pred cccCCHHHHHHHHHHHHH--HcCCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYK--ALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d~ 164 (244)
+| ... ...+++.+.+ +|+|||++++...
T Consensus 132 ~~-~~~--~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 132 FR-RGL--LEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SS-TTT--HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CC-CCc--HHHHHHHHHhcCccCCCcEEEEEEC
Confidence 55 222 3467777766 4999999998654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-11 Score=103.29 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=77.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------CCCeeEEeCCCCCCC---Cc-ceEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------IPEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------~~~i~~~~gd~~~~~---p~-~D~v 128 (244)
+..+|||||||+|.+++.+++..+..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 458999999999999999998766677 999999 999987764 258999999986642 22 5999
Q ss_pred Eecccccc---CCHHH--HHHHHHHHHHHcCCCCEEEEec
Q 041308 129 FMKWVLTT---WTDDE--CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 129 ~~~~~lh~---~~~~~--~~~~l~~~~~~L~pgG~lii~d 163 (244)
++....|. -+... ...++++++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 98766554 11111 2578999999999999999853
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-11 Score=103.99 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=75.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
++.+|||||||+|.+++.+++..|..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 458999999999999999998767778 999999 999988764 257999999986542 22 59999
Q ss_pred eccccccCCHH-H--HHHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDD-E--CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~-~--~~~~l~~~~~~L~pgG~lii~d 163 (244)
+...- .+... . ...++++++++|+|||.+++..
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 86432 22211 1 1588999999999999999853
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-11 Score=104.56 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=72.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
+..+|||||||+|..++.+++..|..+ ++++|+ +.+++.|++ .++++++.+|..+.+ +. .|+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 458999999999999999998777778 999999 999988764 257999999987642 22 59999
Q ss_pred eccccccCCHHHH---HHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDDEC---KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~~~---~~~l~~~~~~L~pgG~lii~d 163 (244)
+... +++.+... ..++++++++|+|||.+++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654 33332221 588999999999999999854
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=96.87 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=73.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec--hHHHHhCCCC----------------CCeeEEeCCCCCC---
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL--PEVVAKAPSI----------------PEVTHIGGDMFKS--- 121 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~--~~~i~~a~~~----------------~~i~~~~gd~~~~--- 121 (244)
..+..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ +++++...|..+.
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~-v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQ-VVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSE-EEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCE-EEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 3456799999999999999888764 336 999998 5777766532 2688886665432
Q ss_pred C----C--cceEEEeccccccCCHHHHHHHHHHHHHHcC---C--CCEEEEe
Q 041308 122 I----H--VVDAIFMKWVLTTWTDDECKLIMENYYKALL---A--GRKLIAC 162 (244)
Q Consensus 122 ~----p--~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~---p--gG~lii~ 162 (244)
+ + ..|+|++..+++|.++ ...+++.+.++|+ | ||+++++
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HHhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 2 1 2599999999988554 4689999999999 9 9998774
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-11 Score=99.69 Aligned_cols=112 Identities=12% Similarity=-0.005 Sum_probs=82.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C----
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I---- 122 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~---- 122 (244)
+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .+++++.+|+.+. .
T Consensus 75 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 152 (274)
T 3ajd_A 75 PPIVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGT-IVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK 152 (274)
T ss_dssp HHHHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred HHHHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh
Confidence 344445 567789999999999999999998776 67 999999 8888877653 5899999998653 1
Q ss_pred -Cc-ceEEEecccc------cc---CCH-------HHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 123 -HV-VDAIFMKWVL------TT---WTD-------DECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 123 -p~-~D~v~~~~~l------h~---~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+. .|+|++.-.+ ++ ++. ....++++++.+.|||||++++..+.....
T Consensus 153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ 217 (274)
T 3ajd_A 153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE 217 (274)
T ss_dssp TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT
T ss_pred ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH
Confidence 22 4999976322 21 111 112578999999999999999987765443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=90.63 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=89.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----C-CeeEEeCCCCCCCCcceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----P-EVTHIGGDMFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~-~i~~~~gd~~~~~p~~D~v~~~~~lh~ 136 (244)
..+..+|||+|||+|.++..+++..+ .+ ++++|+ +.+++.++++ . +++++.+|+.+.-...|+|++...+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcc
Confidence 34568999999999999999998743 36 999999 9999888764 1 799999998763223599999998888
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
........+++++.+.+ |+ +++... +. + .+.+...+++++.||+...+
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~-~~~~~~--~~----~-----------------------~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DV-VYSIHL--AK----P-----------------------EVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SE-EEEEEE--CC----H-----------------------HHHHHHHHHHHHTTEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--Cc-EEEEEe--CC----c-----------------------CCHHHHHHHHHHCCCeEEEE
Confidence 76544567899999998 44 443321 00 0 01334567788899887766
Q ss_pred EEc
Q 041308 217 FIS 219 (244)
Q Consensus 217 ~~~ 219 (244)
...
T Consensus 173 ~~~ 175 (207)
T 1wy7_A 173 LTT 175 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-11 Score=102.53 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=73.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
+..+|||||||+|..++.+++..+..+ ++++|+ +.+++.++++ ++++++.+|..+.+ +. .|+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 358999999999999999998766677 999999 9999887642 68999999976532 22 59999
Q ss_pred eccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 130 MKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 130 ~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+...-+..... ....++++++++|+|||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 75432212111 1157899999999999999985
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.1e-11 Score=101.48 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=71.7
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~ 136 (244)
+.+|||||||+|.++..+++.+. -+ ++++|..+|++.|++. ++|+++.+|+.+. +|+ .|+|++.++-+.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~-V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA-RR-VYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCEEEEeCCCccHHHHHHHHhCC-CE-EEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 47999999999999987777643 35 9999995577777642 7899999999775 776 599998655444
Q ss_pred CCHH-HHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDD-ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~-~~~~~l~~~~~~L~pgG~lii 161 (244)
+..+ ....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 3323 345677888899999999864
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=102.39 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=84.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p- 123 (244)
+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .+++++.+|+.+. ++
T Consensus 251 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 251 ASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGK-IYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred HHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence 344445 567789999999999999999998876 67 999999 8888777653 5799999998764 33
Q ss_pred c-ceEEEe------ccccccCCHHH--------------HHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 124 V-VDAIFM------KWVLTTWTDDE--------------CKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 124 ~-~D~v~~------~~~lh~~~~~~--------------~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
. .|+|++ ..++++.++.. ...+|+++.+.|||||++++.++....
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 599996 23444433321 157899999999999999998876543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-10 Score=97.04 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=74.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C--CeeEEeCCCCCCCC-------cceEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P--EVTHIGGDMFKSIH-------VVDAI 128 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~--~i~~~~gd~~~~~p-------~~D~v 128 (244)
+..+|||+|||+|.++..+++... + ++++|+ +.+++.++++ . +++++.+|+++.++ ..|+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~-V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--E-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--E-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 457999999999999999998654 7 999999 9999988863 2 59999999876432 25999
Q ss_pred EeccccccC--------CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTW--------TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~--------~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++....... ..+....+++++.+.|+|||.+++...
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 984321110 023356899999999999999877554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-10 Score=99.15 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=81.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc--ceE
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV--VDA 127 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~--~D~ 127 (244)
+++.+++.++ ..+..+|||+|||+|.++..++++. +..+ ++++|+ +.+++.| .+++++.+|+++..+. .|+
T Consensus 27 l~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~-i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~ 101 (421)
T 2ih2_A 27 VVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYR-FVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDL 101 (421)
T ss_dssp HHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSE-EEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEE
T ss_pred HHHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCe-EEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCE
Confidence 3444555555 3445699999999999999999887 5677 999999 8888777 6899999999876432 599
Q ss_pred EEeccccc----------cCCHHHH-----------------HHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLT----------TWTDDEC-----------------KLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh----------~~~~~~~-----------------~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+++--.. |+.++.. ..+++++.+.|+|||+++++-+
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 99952221 2333322 1568999999999999998754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-11 Score=109.77 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=80.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~ 132 (244)
.+.+|||||||+|.++..+++.+ .+ |+++|+ +.+|+.|+.. .++++..++..+. .+. .|+|++.-
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~g--a~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKG--AT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCC--CE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45799999999999999999874 56 999999 9999988742 3689999988543 232 59999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++||+++++...-+..+.+.|+++|+.++...+..
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 99999988755667778888999888887765443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.2e-10 Score=92.34 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=67.1
Q ss_pred CCCcceEEEEcC------CccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCCCeeE-EeCCCCCC-CCc-ceEEEec
Q 041308 63 FKGVKRLVDVGG------SAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIPEVTH-IGGDMFKS-IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~~i~~-~~gd~~~~-~p~-~D~v~~~ 131 (244)
+++..+|||+|| |+|. ..+++..| ..+ ++++|+ +. + +++++ +.+|+.+. ++. .|+|++.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~-V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn 130 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTL-LVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISD 130 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCE-EEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCE-EEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEc
Confidence 677889999999 5577 44566666 578 999999 65 2 47889 99999775 443 5999986
Q ss_pred ccccc--------CC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTT--------WT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~--------~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+. .. .+....++++++++|||||+|++...
T Consensus 131 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 131 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 43221 10 12245789999999999999998643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-11 Score=96.09 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=79.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
..+.+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 17 ~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~-v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQ-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SE-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--Ce-EEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccC
Confidence 3455677776 6777899999999999999999885 56 999999 9999988875 5799999999874 542
Q ss_pred ceEEEeccccccCCHHHHHHHH--------------HHHHHHcCCCCEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIM--------------ENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l--------------~~~~~~L~pgG~lii~d~ 164 (244)
...+++.+.-.+.+......++ +.+.+.|+|||++.+...
T Consensus 93 ~~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 93 QRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred CCcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 2223333333333333333333 668999999999877543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-10 Score=98.16 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=81.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCC-----CCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEe
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCF-----ICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFM 130 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~ 130 (244)
.+..+|||+|||+|.++..+++..+. .+ ++++|+ +.+++.|+.+ .++++..+|.+++.+. .|+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~-v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence 45689999999999999999988764 56 999999 9998888753 3689999999887442 599999
Q ss_pred ccccccCCHHHH----------------HHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTDDEC----------------KLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~----------------~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 988777654432 2589999999999999998653
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-10 Score=92.00 Aligned_cols=104 Identities=9% Similarity=0.121 Sum_probs=73.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+++.++ ..+..+|||+|||+|.++..++++. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 18 ~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NF-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccC
Confidence 3456777776 6777899999999999999999986 46 999999 9998887652 6899999999774 553
Q ss_pred ceEEEeccccccCCHHHHHHHH--------------HHHHHHcCCCCEE
Q 041308 125 VDAIFMKWVLTTWTDDECKLIM--------------ENYYKALLAGRKL 159 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l--------------~~~~~~L~pgG~l 159 (244)
.+..++.+.-++++.+-..+++ ..+.|.++|+|++
T Consensus 94 ~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 94 QSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred CCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 3434444444444443333333 2256666776654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-10 Score=96.72 Aligned_cols=122 Identities=13% Similarity=0.028 Sum_probs=90.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~ 131 (244)
+.+..+|||+|||+|.+++.++...+..+ ++++|+ +.+++.|+++ +++++..+|+.+. .+. .|+|+++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~-v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGE-IIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSC-EEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 45678999999999999999999887667 999999 9999998864 4799999999774 332 4999997
Q ss_pred cccccCC------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 132 WVLTTWT------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 132 ~~lh~~~------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
..++... .+-...+++++.++| ||.++++.. +.+.+++.
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------------~~~~~~~~ 338 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------------EKKAIEEA 338 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------------CHHHHHHH
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------------CHHHHHHH
Confidence 6544321 111257888999989 555555432 13445678
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
+.+.||+..+...+.
T Consensus 339 ~~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 339 IAENGFEIIHHRVIG 353 (373)
T ss_dssp HHHTTEEEEEEEEEE
T ss_pred HHHcCCEEEEEEEEE
Confidence 889999988876653
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-10 Score=91.60 Aligned_cols=121 Identities=14% Similarity=0.028 Sum_probs=90.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+++.+|||+|||+|.++..+++.. ..+ ++++|+ |..++.++++ +++++..+|..+..+. +|.|++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~-V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCe-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC
Confidence 4567999999999999999999774 457 999999 9998888763 6799999999876444 59988764
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
.-. ...++..+.++|||||.+.+.+.+..+... ....+.++++.++.|++
T Consensus 201 p~~------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~------------------------~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 201 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCE
T ss_pred CCc------HHHHHHHHHHHcCCCCEEEEEeeecccccc------------------------hhHHHHHHHHHHHcCCc
Confidence 321 236788899999999999887654322100 01245667888899987
Q ss_pred eEE
Q 041308 213 HLR 215 (244)
Q Consensus 213 ~~~ 215 (244)
+..
T Consensus 251 v~~ 253 (278)
T 3k6r_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=99.48 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=83.9
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---CCc--
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---IHV-- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~p~-- 124 (244)
+...++ ..++.+|||+|||+|..+..+++..++.+ ++++|+ +.+++.++++ .+++++.+|+.+. ++.
T Consensus 238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~ 315 (429)
T 1sqg_A 238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 315 (429)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCC
Confidence 334444 56678999999999999999999988878 999999 8888777653 3578999999765 232
Q ss_pred ceEEEec------cccccCCHH-------H-------HHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 125 VDAIFMK------WVLTTWTDD-------E-------CKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 125 ~D~v~~~------~~lh~~~~~-------~-------~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.|+|++. .++++.++. + ...+|+++.+.|||||++++.++....
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~ 379 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 379 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 5999862 344443331 1 147899999999999999998876543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-10 Score=94.78 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=73.3
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
+.+.+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++
T Consensus 30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~--~~-v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLA--KK-VITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence 3455666666 6677899999999999999999763 46 999999 9998887752 6899999999775 55
Q ss_pred cceEEEeccccccCCHHHHHHHH---------------HHHHHHcCCCC
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIM---------------ENYYKALLAGR 157 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l---------------~~~~~~L~pgG 157 (244)
..|+|++.... ++..+...+++ ..+.|.++|+|
T Consensus 106 ~~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 106 KFDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cCCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 56999886554 46666555666 34678888877
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=97.31 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=79.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc-ceEEEec-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV-VDAIFMK- 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~-~D~v~~~- 131 (244)
++.+|||+|||+|..+..+++..+ ..+ ++++|+ +.+++.++++ .++.++.+|..+. .+. .|+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~-V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGA-ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 678999999999999999999865 467 999999 9998887753 5799999998763 233 5999972
Q ss_pred -----cccc-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 132 -----WVLT-------TWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 132 -----~~lh-------~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.+++ ++++++ ..++|+++.+.|||||++++..+.....
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~ 252 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE 252 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc
Confidence 1222 233322 2478999999999999999988765443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-10 Score=100.70 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=82.9
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---C
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---I 122 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~ 122 (244)
..+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ . +.++.+|..+. .
T Consensus 91 ~l~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~-V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 91 QAVGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGL-LLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHH
T ss_pred HHHHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhc
Confidence 33444555 567799999999999999999998765 67 999999 9999888763 4 88999987553 2
Q ss_pred Cc-ceEEEec------cccc-------cCCHHHH-------HHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 123 HV-VDAIFMK------WVLT-------TWTDDEC-------KLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 123 p~-~D~v~~~------~~lh-------~~~~~~~-------~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+. .|+|++. .+++ +++.++. ..+|+++.+.|||||+++...+.....
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e 235 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE 235 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh
Confidence 23 5999952 1122 2222222 678999999999999999887765433
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-10 Score=99.72 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=88.1
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCe
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEV 111 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i 111 (244)
.|.+..-...+.....+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .++
T Consensus 81 ~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~-V~AvDis~~rl~~~~~n~~r~g~~nv 158 (456)
T 3m4x_A 81 LHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGL-LVTNEIFPKRAKILSENIERWGVSNA 158 (456)
T ss_dssp HHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEECSSHHHHHHHHHHHHHHTCSSE
T ss_pred HHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 3444333333333333445555 567789999999999999999988664 57 999999 9888888753 578
Q ss_pred eEEeCCCCCC---CCc-ceEEEeccc------ccc-------CCHH-------HHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 112 THIGGDMFKS---IHV-VDAIFMKWV------LTT-------WTDD-------ECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 112 ~~~~gd~~~~---~p~-~D~v~~~~~------lh~-------~~~~-------~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.++.+|..+. .+. .|+|++.-- +.. ++.+ ....+|+++.+.|||||+++...+...
T Consensus 159 ~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 159 IVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 9999987553 223 599987322 221 1111 113789999999999999999887655
Q ss_pred CC
Q 041308 168 DD 169 (244)
Q Consensus 168 ~~ 169 (244)
..
T Consensus 239 ~e 240 (456)
T 3m4x_A 239 PE 240 (456)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.6e-10 Score=96.39 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=76.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCCCC-------cceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKSIH-------VVDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~~p-------~~D~v~ 129 (244)
+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ . +++++.+|+++.++ ..|+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~-v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 5689999999999999999986 3336 999999 9999888763 2 89999999876422 249999
Q ss_pred eccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 130 MKWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 130 ~~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+.......+. .....+++++.+.|+|||.+++..+.
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 8543322221 33567899999999999999987763
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=8e-10 Score=95.83 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=75.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-------cceEEEe
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-------VVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-------~~D~v~~ 130 (244)
+..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ ++++++.+|+++.++ ..|+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5689999999999999999987 346 999999 9999888763 459999999876422 2499998
Q ss_pred ccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.-.....+. .....+++++.+.|+|||.+++...
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 543322211 3346789999999999999998765
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=92.73 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCcceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~lh 135 (244)
.++.+|||+|||+|.++.. ++ ...+ ++++|+ +.+++.++++ ++++++.+|+++.+...|+|++...-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~-V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh
Confidence 4568999999999999999 76 3556 999999 9999888763 579999999977664469999863221
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...+++++.+.|+|||.+++.+..
T Consensus 270 ------~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 ------AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEEee
Confidence 137899999999999999997764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=86.27 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=100.5
Q ss_pred cchHHHhccCCCCC-----CcceEEEEcCCccHHHHHHH--------HHc-------CCCCeEEEeech-HH-------H
Q 041308 51 PFMTSVLDGYDGFK-----GVKRLVDVGGSAGDCLRIIL--------QKH-------CFICEGINFDLP-EV-------V 102 (244)
Q Consensus 51 ~~~~~l~~~~~~~~-----~~~~vLDvG~G~G~~~~~l~--------~~~-------p~~~~~~~~D~~-~~-------i 102 (244)
+++++.++.+. .+ ..-+|+|+|||+|.++..+. +++ |+++ +..-|+| +. +
T Consensus 34 ~~~~~ai~~l~-~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~-v~~nDLp~NDFn~lF~~L 111 (374)
T 3b5i_A 34 HLLEETLENVH-LNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFT-AFFSDLPSNDFNTLFQLL 111 (374)
T ss_dssp HHHHHHHHTSC-CCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEE-EEEEECTTSCHHHHHHHS
T ss_pred HHHHHHHHHhh-ccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCcee-EEecCCCccchHHHHhhh
Confidence 34444455554 22 24799999999999988872 222 6777 8888984 22 2
Q ss_pred HhCCC----------C-CC---eeEEeCCCCCC-CCcc--eEEEeccccccCCH--------------------------
Q 041308 103 AKAPS----------I-PE---VTHIGGDMFKS-IHVV--DAIFMKWVLTTWTD-------------------------- 139 (244)
Q Consensus 103 ~~a~~----------~-~~---i~~~~gd~~~~-~p~~--D~v~~~~~lh~~~~-------------------------- 139 (244)
...++ . .+ +.-+.|.+... +|.. |+|+++..||.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~ 191 (374)
T 3b5i_A 112 PPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK 191 (374)
T ss_dssp CCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH
T ss_pred hhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHH
Confidence 22211 0 11 23355777654 7764 99999999998871
Q ss_pred ----------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCC-c-hHH-----hhh-hhcccHhhhh------hhccC--
Q 041308 140 ----------DECKLIMENYYKALLAGRKLIACEPVLPDDSN-E-SQR-----TRA-LLEGDIFVMT------IYRAK-- 193 (244)
Q Consensus 140 ----------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~-~-~~~-----~~~-~~~~d~~~~~------~~~~~-- 193 (244)
.+...+|+..++.|+|||++++.-...++... . ... ... ..+.++.... +...+
T Consensus 192 v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P 271 (374)
T 3b5i_A 192 TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc
Confidence 13345799999999999999987665543210 0 000 000 0011110000 00011
Q ss_pred ceecCHHHHHHHHH-hCCCCeEEEEEcc
Q 041308 194 GKHKTEQEFKQLGF-STGFPHLRAFISI 220 (244)
Q Consensus 194 ~~~~t~~e~~~ll~-~aGf~~~~~~~~~ 220 (244)
-..++.+|++++++ ++||++..++...
T Consensus 272 ~y~ps~~E~~~~l~~~~~F~I~~le~~~ 299 (374)
T 3b5i_A 272 VYAPSLQDFKEVVDANGSFAIDKLVVYK 299 (374)
T ss_dssp BCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence 23368999999998 5999998876654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=94.05 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C--CeeEEeCCCCCCCC-------cceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P--EVTHIGGDMFKSIH-------VVDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~--~i~~~~gd~~~~~p-------~~D~ 127 (244)
.+..+|||+|||+|.++..+++... .+ ++++|+ +.+++.|+++ . +++++.+|+++.++ ..|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~-V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA-MA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 288 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC-CE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence 4568999999999999999997642 25 999999 9999988763 3 89999999876432 2599
Q ss_pred EEecccc-----ccCC--HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVL-----TTWT--DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~l-----h~~~--~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|++.... ++.. ......+++++.+.|+|||.+++...
T Consensus 289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9985333 1222 12345678899999999999988654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-09 Score=90.21 Aligned_cols=110 Identities=5% Similarity=-0.090 Sum_probs=82.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--------------------------------------CCeEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--------------------------------------ICEGI 94 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 94 (244)
+..++.... |.+...|||.+||+|.++++++....+ .+ ++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~ 267 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN-II 267 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce-EE
Confidence 344556665 888899999999999999998876544 57 99
Q ss_pred Eeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc-CC-HHHHHHHHHHHHHHcCC--CCEEE
Q 041308 95 NFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT-WT-DDECKLIMENYYKALLA--GRKLI 160 (244)
Q Consensus 95 ~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~p--gG~li 160 (244)
++|+ +.+++.|+++ .++++..+|+.+. .+. .|+|+++--.+. +. .++...+.+++.+.||+ ||.++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9999 9999998863 4699999999875 333 599998855432 22 24456677777777776 88888
Q ss_pred Eecc
Q 041308 161 ACEP 164 (244)
Q Consensus 161 i~d~ 164 (244)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=86.99 Aligned_cols=111 Identities=9% Similarity=-0.032 Sum_probs=85.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--------------------------------------CCeE
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--------------------------------------ICEG 93 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 93 (244)
++..++.... |.+...+||.+||+|.++++.+....+ .+ +
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-v 259 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD-I 259 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-E
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce-E
Confidence 3444555565 888899999999999999998876544 56 9
Q ss_pred EEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc-C-CHHHHHHHHHHHHHHcCC--CCEE
Q 041308 94 INFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT-W-TDDECKLIMENYYKALLA--GRKL 159 (244)
Q Consensus 94 ~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~-~-~~~~~~~~l~~~~~~L~p--gG~l 159 (244)
+++|+ +.+++.|+++ .++++..+|+.+. .+. .|+|+++--.+. + ..++...+.+++.+.||+ ||.+
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 339 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQ 339 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 99999 9999998864 4699999999875 333 599999855432 3 245667888888888887 9998
Q ss_pred EEecc
Q 041308 160 IACEP 164 (244)
Q Consensus 160 ii~d~ 164 (244)
+++..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-09 Score=95.05 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=82.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-------------CCCCeEEEeec-hHHHHhCCCC------C--C
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-------------CFICEGINFDL-PEVVAKAPSI------P--E 110 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~~D~-~~~i~~a~~~------~--~ 110 (244)
++.+++.+. ..+..+|||.|||+|.++..+.+.. +..+ ++++|+ +.+++.|+.+ . +
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~-i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeE-EEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 444555555 4556799999999999999988763 3467 999999 9888877642 2 6
Q ss_pred eeEEeCCCCCC-CC-cceEEEeccccccCCHH---------------HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 111 VTHIGGDMFKS-IH-VVDAIFMKWVLTTWTDD---------------ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 111 i~~~~gd~~~~-~p-~~D~v~~~~~lh~~~~~---------------~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+++..+|.+.. .. ..|+|+++-.+++.... ....+++++.+.|+|||+++++-+
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 78999999876 32 35999998776653321 114789999999999999988754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=88.42 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=84.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--------------------------------------CCeEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--------------------------------------ICEGI 94 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 94 (244)
+..++.... |.+..+|||.+||+|.++++++....+ .+ ++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK-IY 261 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC-EE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce-EE
Confidence 444555665 888899999999999999999876433 57 99
Q ss_pred Eeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc-CC-HHHHHHHHHHHHHHcCC--CCEEE
Q 041308 95 NFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT-WT-DDECKLIMENYYKALLA--GRKLI 160 (244)
Q Consensus 95 ~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~p--gG~li 160 (244)
++|+ +.+++.|+++ +++++..+|+.+. .+. .|+|+++--.+. +. .++...+.+++.+.|++ |+.++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9999 9999999864 4799999999875 333 499999766532 22 34566788888888887 88888
Q ss_pred Eecc
Q 041308 161 ACEP 164 (244)
Q Consensus 161 i~d~ 164 (244)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-09 Score=92.55 Aligned_cols=98 Identities=18% Similarity=0.073 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------C-CeeEEeCCCCCCCC-------cceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------P-EVTHIGGDMFKSIH-------VVDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~-~i~~~~gd~~~~~p-------~~D~ 127 (244)
.+..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ . +++++.+|+++.++ ..|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 356899999999999999999864 346 999999 9999888753 2 78999999876532 2599
Q ss_pred EEecccc--------ccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVL--------TTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~l--------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|++.-.. +... .....++.++.+.|+|||.+++...
T Consensus 297 Ii~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EEECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9986322 1111 2346889999999999999998664
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.7e-09 Score=90.22 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCC---Cc-ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSI---HV-VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~---p~-~D~v~~~~~ 133 (244)
+++.+|||+|||||.++..+++.. .+ ++++|+ +.+++.++++ -...+..+|+++.+ +. .|+|++.-.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 447899999999999999999864 56 999999 9999988864 22357789987642 22 599998644
Q ss_pred cccCCH-------HHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 134 LTTWTD-------DECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 134 lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...-+. .....+++++.+.|+|||++++..+.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 322111 22357899999999999999987764
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-09 Score=94.94 Aligned_cols=128 Identities=15% Similarity=0.101 Sum_probs=87.9
Q ss_pred ccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeechHHHH
Q 041308 28 YSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDLPEVVA 103 (244)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~~~~i~ 103 (244)
||..++|+-..+.|++|+...-.. .+.+.-. ......|||||||+|-++...++.. -+++ +.+++...+..
T Consensus 324 YevFEkD~vKy~~Ye~AI~~Al~d---~~~~~~~-~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp~A~ 398 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYKCLLD---RVPEEEK-DTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNPNAV 398 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH---HSCGGGT-TTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCHHHH
T ss_pred hhhhcCChhhHHHHHHHHHHHHHH---hhhhccc-cCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCHHHH
Confidence 777888988888999987632111 1111111 2344689999999999855444432 2346 89999844555
Q ss_pred hCCCC-------CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 104 KAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 104 ~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
.+++. ++|+++.||+.+- +|+ .|+||+.++=..+-.+-...++-...|.|||||.++
T Consensus 399 ~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 399 VTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 55542 7899999999885 787 599998866554444545667777889999999864
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-08 Score=83.08 Aligned_cols=84 Identities=10% Similarity=0.164 Sum_probs=66.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+++.++ ..+..+|||||||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 38 i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~--~~-V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA--KK-VYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence 4556777776 7778899999999999999999873 46 999999 9999888763 7899999999884 665
Q ss_pred -ceEEEeccccccCCHH
Q 041308 125 -VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~ 140 (244)
.|+|+++...+ ++.+
T Consensus 114 ~fD~Iv~NlPy~-is~p 129 (295)
T 3gru_A 114 DFNKVVANLPYQ-ISSP 129 (295)
T ss_dssp CCSEEEEECCGG-GHHH
T ss_pred CccEEEEeCccc-ccHH
Confidence 49988775543 4443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-08 Score=85.36 Aligned_cols=90 Identities=8% Similarity=-0.026 Sum_probs=68.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~v~~~~~lh 135 (244)
.+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ . ++++.+|+.+.++. .|+|++...-.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~--~~-V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG--FN-VKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred CCCCEEEEeeccchHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 456899999999999999999863 36 999999 9999988864 3 89999999876553 69999865433
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.... .+++.+. .|+|||.+++.
T Consensus 365 g~~~----~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 365 GLHP----RLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp CSCH----HHHHHHH-HHCCSEEEEEE
T ss_pred chHH----HHHHHHH-hcCCCcEEEEE
Confidence 2222 3445444 58999998874
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=81.64 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=63.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+++.++ ..+..+|||||||+|.++. +. +.+..+ ++++|+ +.|++.++++ ++++++.+|+.+. ++.
T Consensus 9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~-v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQ-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSC-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCe-EEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence 3455666665 6777899999999999999 64 556666 999999 9999988764 4899999999774 432
Q ss_pred -----c-eEEEeccccccCCHHHHHHHH
Q 041308 125 -----V-DAIFMKWVLTTWTDDECKLIM 146 (244)
Q Consensus 125 -----~-D~v~~~~~lh~~~~~~~~~~l 146 (244)
. |.|+.+ .-.+++.+-..+++
T Consensus 85 ~~~~~~~~~vvsN-lPY~i~~~il~~ll 111 (252)
T 1qyr_A 85 AEKMGQPLRVFGN-LPYNISTPLMFHLF 111 (252)
T ss_dssp HHHHTSCEEEEEE-CCTTTHHHHHHHHH
T ss_pred hcccCCceEEEEC-CCCCccHHHHHHHH
Confidence 2 445544 44445554333333
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-08 Score=79.98 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=64.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-CCc--ce
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~p~--~D 126 (244)
.+.+++.++ ..+..+|||||||+|.++..+++. +..+ ++++|+ +.+++.++++ .+++++.+|+.+. ++. .+
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~-v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKK-LYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSE-EEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 455666666 667789999999999999999987 3456 999999 9999988865 5789999999875 554 14
Q ss_pred EEEeccccccCCHH
Q 041308 127 AIFMKWVLTTWTDD 140 (244)
Q Consensus 127 ~v~~~~~lh~~~~~ 140 (244)
.+++.+.=.+++.+
T Consensus 97 ~~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 97 LKVVGNLPYNVASL 110 (249)
T ss_dssp EEEEEECCTTTHHH
T ss_pred cEEEEECchhccHH
Confidence 45555555555544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-07 Score=79.00 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=92.5
Q ss_pred cceEEEEcCCccHHHHHHHHH-----------------cCCCCeEEEeech------------HHHHhCCC----CCCee
Q 041308 66 VKRLVDVGGSAGDCLRIILQK-----------------HCFICEGINFDLP------------EVVAKAPS----IPEVT 112 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~~D~~------------~~i~~a~~----~~~i~ 112 (244)
.-+|+|+||++|.++..+... .|+++ +..-|+| .+.+..++ ..+-.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~-v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQ-IFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEE-EEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceE-EEecCCCccchHHHHhhhhhhHhhhhhhccCCCCce
Confidence 579999999999999887766 35667 8888976 12111111 11223
Q ss_pred EE---eCCCCCC-CCcc--eEEEeccccccCCHHH-------------------------HH------------HHHHHH
Q 041308 113 HI---GGDMFKS-IHVV--DAIFMKWVLTTWTDDE-------------------------CK------------LIMENY 149 (244)
Q Consensus 113 ~~---~gd~~~~-~p~~--D~v~~~~~lh~~~~~~-------------------------~~------------~~l~~~ 149 (244)
|+ .|.|... +|.. |+|+++..||.+++.. +. .+|+..
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4555554 7764 9999999999876321 21 237777
Q ss_pred HHHcCCCCEEEEecccCCCC--CCchHHhhhhhcccHhhhhh--------hccCceecCHHHHHHHHHhC-CCCeEEEEE
Q 041308 150 YKALLAGRKLIACEPVLPDD--SNESQRTRALLEGDIFVMTI--------YRAKGKHKTEQEFKQLGFST-GFPHLRAFI 218 (244)
Q Consensus 150 ~~~L~pgG~lii~d~~~~~~--~~~~~~~~~~~~~d~~~~~~--------~~~~~~~~t~~e~~~ll~~a-Gf~~~~~~~ 218 (244)
++.|+|||++++.-...+.. ...........+.++....+ ...--..++.+|++++++++ ||++..++.
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~ 291 (384)
T 2efj_A 212 SEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET 291 (384)
T ss_dssp HHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred HHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 99999999999876655443 11100011112222111100 00112346899999999998 478877755
Q ss_pred c
Q 041308 219 S 219 (244)
Q Consensus 219 ~ 219 (244)
.
T Consensus 292 ~ 292 (384)
T 2efj_A 292 F 292 (384)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-08 Score=86.80 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH---- 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p---- 123 (244)
.+++.++ ..+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.|+++ .+++|+.+|+.+.++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AAS-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 556789999999999999999987 456 999999 9999988753 589999999987532
Q ss_pred ---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 ---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..|+|++.---... ..+++.+. .++|++.+++
T Consensus 353 ~~~~fD~Vv~dPPr~g~-----~~~~~~l~-~~~p~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAGA-----AGVMQQII-KLEPIRIVYV 387 (433)
T ss_dssp GTTCCSEEEECCCTTCC-----HHHHHHHH-HHCCSEEEEE
T ss_pred hcCCCCEEEECCCCccH-----HHHHHHHH-hcCCCeEEEE
Confidence 14999975443222 13444444 3789887776
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-08 Score=94.57 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=74.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCC---C-cceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSI---H-VVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~---p-~~D~v~~~ 131 (244)
++.+|||+|||||.++..+++... .+ ++++|+ +.+++.++++ ++++++.+|+++.+ . ..|+|++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~-V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RS-TTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 468999999999999999997543 35 999999 9999988763 37999999998742 2 25999985
Q ss_pred cccc--------cCC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLT--------TWT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh--------~~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
--.. .+. ......+++++.+.|+|||.|++...
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4221 111 13356789999999999999997554
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=79.10 Aligned_cols=155 Identities=10% Similarity=0.065 Sum_probs=93.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHH----------------cCCCCeEEEeec-hHHHHhCCC-CC------C---eeEEeC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQK----------------HCFICEGINFDL-PEVVAKAPS-IP------E---VTHIGG 116 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~~D~-~~~i~~a~~-~~------~---i~~~~g 116 (244)
+..-+|+|+||++|.++..+... .|+++ +..-|+ .+.....-+ .+ + +.-+.|
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~-v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg 128 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceE-EEecCCCchHHHHHHHhcchhcccCCCEEEEecch
Confidence 34568999999999877655443 35566 888898 333322211 11 2 233557
Q ss_pred CCCCC-CCcc--eEEEeccccccCCH-------------------------------HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 117 DMFKS-IHVV--DAIFMKWVLTTWTD-------------------------------DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 117 d~~~~-~p~~--D~v~~~~~lh~~~~-------------------------------~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|... +|.. |+|+++..||.+++ .+...+|+..++.|+|||++++.
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 77665 7774 99999999998764 12334689999999999999987
Q ss_pred cccCCCCCC-c-----hHHhhhhhcccHhhhhh--------hccCceecCHHHHHHHHHhCCC-CeEEEEEc
Q 041308 163 EPVLPDDSN-E-----SQRTRALLEGDIFVMTI--------YRAKGKHKTEQEFKQLGFSTGF-PHLRAFIS 219 (244)
Q Consensus 163 d~~~~~~~~-~-----~~~~~~~~~~d~~~~~~--------~~~~~~~~t~~e~~~ll~~aGf-~~~~~~~~ 219 (244)
-...++... . -+......+.++....+ +..--..++.+|++++++++|. ++...+..
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 655443310 0 01111112222211110 0111234588999999999955 77666543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-08 Score=80.64 Aligned_cols=90 Identities=8% Similarity=-0.002 Sum_probs=66.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc---
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--- 124 (244)
++.+++..+ ..+. +|||||||+|.++..+++.. .+ ++++|+ +.+++.++++ .+++++.+|+++. ++.
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~-V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~ 110 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AE-VTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQ 110 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CC-EEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccC
Confidence 445666666 6667 99999999999999999875 46 999999 9999888753 6899999999874 553
Q ss_pred ceEEEeccccccCCHHHHHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMEN 148 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~ 148 (244)
.|.|+.+.- .+++.+-..+++..
T Consensus 111 ~~~iv~NlP-y~iss~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANLP-YHIATPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEEC-SSCCHHHHHHHHHH
T ss_pred ccEEEecCc-ccccHHHHHHHhcC
Confidence 376665544 55676544444443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.6e-08 Score=80.27 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCCc----ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIHV----VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p~----~D~ 127 (244)
+++.+||-||+|.|..++++++..+..+ ++.+|+ +.+++.+++. +|++++.+|.++-+.. .|+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~-v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcce-EEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 4568999999999999999997655556 999999 9999988752 7999999999886432 499
Q ss_pred EEeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++-..= -.... -...+++.++++|+|||.++..
T Consensus 161 Ii~D~~d-p~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 161 IISDCTD-PIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEESCCC-CCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeCCC-cCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 9865321 11100 0136899999999999999974
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-08 Score=80.86 Aligned_cols=132 Identities=16% Similarity=0.057 Sum_probs=85.5
Q ss_pred CcceEEEEcCCccHHHHHHHHH-------cCC-----CCeEEEeec-h---HHHHhC-----------C-----------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQK-------HCF-----ICEGINFDL-P---EVVAKA-----------P----------- 106 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~~D~-~---~~i~~a-----------~----------- 106 (244)
+..+|||+|+|+|..+..+++. .|+ ++ ++.++. | +++..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~-~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeE-EEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 4579999999999999887764 564 56 888987 5 332211 1
Q ss_pred ---------CCCCeeEEeCCCCCC---CC-----cceEEEecccc-ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 107 ---------SIPEVTHIGGDMFKS---IH-----VVDAIFMKWVL-TTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 107 ---------~~~~i~~~~gd~~~~---~p-----~~D~v~~~~~l-h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
...++++..||+.+. ++ ..|+|++--.- ..-++--...+|+.+++.|+|||+|+....
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa---- 214 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 214 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence 114577889998653 32 24998874211 101110124789999999999999985211
Q ss_pred CCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 169 DSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
...++..|.++||++.+.........++.+.++
T Consensus 215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 215 ------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME 247 (257)
T ss_dssp ------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred ------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence 013567788899998877666555556655543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-08 Score=82.87 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=56.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS 121 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~ 121 (244)
.+.+++.++ ..+..+|||||||+|.++..+++..+. .+ ++++|+ +.+++.++++ ++++++.+|+.+.
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~-V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSP-LHAVELDRDLIGRLEQRFGELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBC-EEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCe-EEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence 345666665 677789999999999999999998765 67 999999 9999988764 6899999999774
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=75.80 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=66.2
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCC-CCCCc--ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMF-KSIHV--VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~-~~~p~--~D 126 (244)
++.+... +++..+|||+|||+|.+++.++++.+... ++++|+ -.+....... .++.....++. ..++. .|
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~-v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSG-VKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCc-ceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 3445543 77788999999999999999887755434 666776 3331111111 13444455442 12333 49
Q ss_pred EEEeccccc---cCCHH-HHHHHHHHHHHHcCCC-CEEEE
Q 041308 127 AIFMKWVLT---TWTDD-ECKLIMENYYKALLAG-RKLIA 161 (244)
Q Consensus 127 ~v~~~~~lh---~~~~~-~~~~~l~~~~~~L~pg-G~lii 161 (244)
+|++....+ ++.|. ....+|+.+.++|+|| |.|++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 999876554 12222 2235689999999999 99998
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-08 Score=86.13 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=69.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC---C--
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI---H-- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~---p-- 123 (244)
+++..+ .. ..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ ++++++.+|..+.+ +
T Consensus 206 ~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~-V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~ 280 (369)
T 3bt7_A 206 ALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DR-VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 280 (369)
T ss_dssp HHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SE-EEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSC
T ss_pred HHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhc
Confidence 444444 33 3789999999999999988743 35 999999 9999888753 58999999986531 1
Q ss_pred --------------cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 --------------VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 --------------~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|++.---. .+.+++.+.|+|+|+++.+.+
T Consensus 281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 281 REFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred cccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 359888643221 234566777889999998765
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.8e-07 Score=76.31 Aligned_cols=144 Identities=11% Similarity=0.112 Sum_probs=103.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC---------------------------CCeeEEeCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI---------------------------PEVTHIGGD 117 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~---------------------------~~i~~~~gd 117 (244)
+...|+.+|||....+..+...+++++ +.-+|.|.+++..++. ++..++..|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~-~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCE-EEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 468999999999999999998888888 8888988887655421 578999999
Q ss_pred CCCC-C--------C--c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh
Q 041308 118 MFKS-I--------H--V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF 185 (244)
Q Consensus 118 ~~~~-~--------p--~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~ 185 (244)
+.+. + + . ..++++.-+++.+++++..++++.+.+.. |+|.+++.|.+.+.....+ .... ....+.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~-fg~~-m~~~l~ 252 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR-FGAI-MQSNLK 252 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC-HHHH-HHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch-HHHH-HHHHhh
Confidence 9873 2 1 1 27899999999999999999999999987 8888888998776332111 1110 000010
Q ss_pred h-hhhhccC-ceecCHHHHHHHHHhCCCC
Q 041308 186 V-MTIYRAK-GKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 186 ~-~~~~~~~-~~~~t~~e~~~ll~~aGf~ 212 (244)
. ......+ ....+.++..+.|.++||+
T Consensus 253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 0 0000111 2345889999999999997
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.49 E-value=8.3e-08 Score=78.53 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=54.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS 121 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~ 121 (244)
++.+++.++ ..+..+|||||||+|.++..++++. .+ ++++|+ +.+++.++++ ++++++.+|+.+.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~-V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DN-LALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SE-EEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence 445666665 6777899999999999999999875 46 999999 9999888753 6899999999875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.1e-08 Score=88.22 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=82.8
Q ss_pred ccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH----c---------CCCCeEE
Q 041308 28 YSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK----H---------CFICEGI 94 (244)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~---------p~~~~~~ 94 (244)
||...+|+-..+.|++|+... +.+....-.+...|||||||+|-++...++. . ...+ ++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k-Vy 450 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK-LY 450 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE-EE
T ss_pred HHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE-EE
Confidence 667777887778888887642 1121110123468999999999996543222 1 2346 99
Q ss_pred Eeec-hHHHHhCCC------CCCeeEEeCCCCCC-C------Cc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEE
Q 041308 95 NFDL-PEVVAKAPS------IPEVTHIGGDMFKS-I------HV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKL 159 (244)
Q Consensus 95 ~~D~-~~~i~~a~~------~~~i~~~~gd~~~~-~------p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~l 159 (244)
++|. +..+...+. .++|+++.+|+.+- + |+ .|+||+.++=.....+-...+|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 9998 644433222 17899999999764 6 44 59999887744433443456778888999999976
Q ss_pred E
Q 041308 160 I 160 (244)
Q Consensus 160 i 160 (244)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.5e-07 Score=84.37 Aligned_cols=110 Identities=11% Similarity=-0.007 Sum_probs=78.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc------------------------------------------CCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH------------------------------------------CFI 90 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~~ 90 (244)
+..++.... |.+...+||.+||+|.++++.+... +..
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555555 7888999999999999999888652 335
Q ss_pred CeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC----cceEEEecccccc-CC-HHHHHHHHH---HHHHH
Q 041308 91 CEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH----VVDAIFMKWVLTT-WT-DDECKLIME---NYYKA 152 (244)
Q Consensus 91 ~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p----~~D~v~~~~~lh~-~~-~~~~~~~l~---~~~~~ 152 (244)
+ ++++|+ +.+++.|+.+ +.+++..+|+.+. .| ..|+|+++--... +. .++...+.+ ++.+.
T Consensus 258 ~-i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 258 H-FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp C-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred c-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 7 999999 9999998864 4589999999764 23 3499999855432 22 233444444 44455
Q ss_pred cCCCCEEEEecc
Q 041308 153 LLAGRKLIACEP 164 (244)
Q Consensus 153 L~pgG~lii~d~ 164 (244)
+.|||+++++..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 568999998743
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-07 Score=78.72 Aligned_cols=79 Identities=22% Similarity=0.198 Sum_probs=63.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~ 122 (244)
+.+.+++.++ .++..+|||+|||+|..+..+++++|+.+ ++++|. +.+++.|+++ ++++++.+|+.+. +
T Consensus 14 Ll~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~-VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 14 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 91 (301)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 4556666666 66778999999999999999999988778 999999 9999888753 5899999998542 1
Q ss_pred -----CcceEEEecc
Q 041308 123 -----HVVDAIFMKW 132 (244)
Q Consensus 123 -----p~~D~v~~~~ 132 (244)
...|.|++..
T Consensus 92 ~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 92 KTLGIEKVDGILMDL 106 (301)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HhcCCCCCCEEEEcC
Confidence 2358888754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.4e-07 Score=75.74 Aligned_cols=110 Identities=11% Similarity=-0.033 Sum_probs=75.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC---C-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI---H- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~---p- 123 (244)
++..++ ..++.+|||+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+++++.+|+.+.. +
T Consensus 94 ~~~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~-V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 94 PAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred HHHHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccc
Confidence 444455 6677899999999999999999875 4567 999999 8888877753 57999999986542 1
Q ss_pred --cceEEEec------cccccCCH---------H-------HHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 124 --VVDAIFMK------WVLTTWTD---------D-------ECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 124 --~~D~v~~~------~~lh~~~~---------~-------~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
..|.|++. .++..-++ + ...++|+++.+.|+ ||+++...+....
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ 239 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence 24998862 11211111 1 11357888888776 9988877665543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.39 E-value=4e-07 Score=74.56 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=55.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-h-------HHHHhCCCC-------CCeeEEeCCCCCC---CC-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-P-------EVVAKAPSI-------PEVTHIGGDMFKS---IH- 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~-------~~i~~a~~~-------~~i~~~~gd~~~~---~p- 123 (244)
..+..+|||+|||+|..+..+++. ..+ ++++|+ + .+++.++++ .+++++.+|..+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLT-VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCC-EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCE-EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence 445689999999999999999986 357 999999 8 888888754 4699999998764 33
Q ss_pred ---cceEEEecccccc
Q 041308 124 ---VVDAIFMKWVLTT 136 (244)
Q Consensus 124 ---~~D~v~~~~~lh~ 136 (244)
..|+|++.-.+++
T Consensus 158 ~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHCCCSEEEECCCC--
T ss_pred cCCCccEEEECCCCCC
Confidence 2599999776655
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-07 Score=74.15 Aligned_cols=108 Identities=12% Similarity=0.012 Sum_probs=69.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCC-eeEEeC-CCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPE-VTHIGG-DMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~-i~~~~g-d~~~~~p~-~ 125 (244)
.++.+.+. +++..+|||+|||+|.+++.++++.+... ++++|+ ..+...+.. ..+ +.+... |+....+. +
T Consensus 80 ~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~s-V~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKK-VMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCe-eeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44666664 78888999999999999999998766556 788888 443332322 112 333332 33222222 5
Q ss_pred eEEEeccccc----cCCHHHHHHHHHHHHHHcCCC--CEEEEec
Q 041308 126 DAIFMKWVLT----TWTDDECKLIMENYYKALLAG--RKLIACE 163 (244)
Q Consensus 126 D~v~~~~~lh----~~~~~~~~~~l~~~~~~L~pg--G~lii~d 163 (244)
|+|++...-+ ..+......+|+-+.++|+|| |.|++-=
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 9999876654 111222335688888999999 9999843
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-07 Score=81.90 Aligned_cols=109 Identities=10% Similarity=0.009 Sum_probs=78.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC------------------CCCeEEEeec-hHHHHhCCCC-----
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC------------------FICEGINFDL-PEVVAKAPSI----- 108 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~~D~-~~~i~~a~~~----- 108 (244)
++.+++... ..+..+|+|.|||+|.++..+.+... ..+ ++++|+ +.+++.|+.+
T Consensus 158 v~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~-i~GiEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 158 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcce-EEEEcCCHHHHHHHHHHHHHhC
Confidence 344555555 45567999999999999988876532 236 999999 8888877642
Q ss_pred -CC-----eeEEeCCCCCC----CCcceEEEeccccccCCH------------HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 109 -PE-----VTHIGGDMFKS----IHVVDAIFMKWVLTTWTD------------DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 109 -~~-----i~~~~gd~~~~----~p~~D~v~~~~~lh~~~~------------~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.. +++..+|.+.. ....|+|+++--+..... ..-..++.++.+.|+|||+++++-
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 32 78899998864 123599998765543221 112478999999999999998874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-07 Score=78.46 Aligned_cols=91 Identities=9% Similarity=-0.120 Sum_probs=70.7
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------------CCeeEEeCCCCCC--
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------------PEVTHIGGDMFKS-- 121 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------------~~i~~~~gd~~~~-- 121 (244)
..+|||+|||+|..+..++++.+..+ ++++|+ +..++.++++ .+++++.+|..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~-V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 58999999999999999999987778 999999 8888777642 2388999998654
Q ss_pred -CC-cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 122 -IH-VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 122 -~p-~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+ ..|+|++.- .. + ...++..+.+.|+|||.+++.-
T Consensus 127 ~~~~~fD~I~lDP-~~--~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC--C---HHHHHHHHHHhcCCCCEEEEEe
Confidence 22 259988543 21 1 1367899999999999887753
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-07 Score=79.66 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=71.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CC-eeEEeCCCCCCC----C-cceEEEe
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PE-VTHIGGDMFKSI----H-VVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~-i~~~~gd~~~~~----p-~~D~v~~ 130 (244)
++.+|||++||+|.+++.++++..+...++++|+ +..++.++++ .+ ++++.+|.++.+ + ..|+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4689999999999999999997655323999999 9888888763 34 999999985432 2 2599997
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.- . ... ..++..+.+.|+|||.+++..
T Consensus 132 DP-~-g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP-F-GTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC-S-SCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-C-cCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 75 1 111 257889999999999887755
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.3e-06 Score=66.85 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=65.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----C-CCeeEEeC-CCCCCCCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----I-PEVTHIGG-DMFKSIHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~-~~i~~~~g-d~~~~~p~-~D~ 127 (244)
+.+. ..+++..+|||+||++|.+++.++++.+-.. ++++|+ ..+...... . +-+.+..+ |++...+. .|+
T Consensus 73 i~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~s-V~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~Dl 150 (300)
T 3eld_A 73 LHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMS-VKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDT 150 (300)
T ss_dssp HHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCce-eeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCE
Confidence 3344 3366788999999999999999998765445 788888 433222111 1 22334333 44332233 499
Q ss_pred EEeccccc----cCCHHHHHHHHHHHHHHcCCC-CEEEEe
Q 041308 128 IFMKWVLT----TWTDDECKLIMENYYKALLAG-RKLIAC 162 (244)
Q Consensus 128 v~~~~~lh----~~~~~~~~~~l~~~~~~L~pg-G~lii~ 162 (244)
|++...-+ ..+......+|.-+.+.|+|| |.|++-
T Consensus 151 VlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 151 LLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99765444 111112245688888999999 999985
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=68.08 Aligned_cols=131 Identities=11% Similarity=0.074 Sum_probs=84.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCc---ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHV---VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~---~D~v~~~~~lh~~~~ 139 (244)
++++.++||+||++|.++..++++. .+ ++++|..+|-......++|++..+|.++..|. .|+|++-.+.+ +
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg--~~-V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN--MW-VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT--CE-EEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC--CE-EEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h
Confidence 4678999999999999999999874 57 99999855555555668999999999887443 39999876653 4
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe-EEEEE
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH-LRAFI 218 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~-~~~~~ 218 (244)
.....++.+....+..++.++.+.. +.+. .. +... ...+.+...|+.+||.. +++.+
T Consensus 283 ~~~~~l~~~wl~~~~~~~aI~~lKL--~mk~--~~--------~~l~----------~~~~~i~~~l~~~g~~~~l~akh 340 (375)
T 4auk_A 283 AKVAALMAQWLVNGWCRETIFNLKL--PMKK--RY--------EEVS----------HNLAYIQAQLDEHGINAQIQARQ 340 (375)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEEC--CSSS--HH--------HHHH----------HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHhHHHHHHHHhccccceEEEEEEe--cccc--hH--------HHHH----------HHHHHHHHHHHhcCcchhheehh
Confidence 4444445544444444455554443 2110 00 0000 11456678889999973 34445
Q ss_pred ccc
Q 041308 219 SII 221 (244)
Q Consensus 219 ~~~ 221 (244)
+..
T Consensus 341 L~h 343 (375)
T 4auk_A 341 LYH 343 (375)
T ss_dssp CTT
T ss_pred hcc
Confidence 443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=74.19 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=70.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC---CCCeEEEeec-hHHHHhC--CC----------CCCeeEEeCCCCCCC--C-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC---FICEGINFDL-PEVVAKA--PS----------IPEVTHIGGDMFKSI--H- 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~~D~-~~~i~~a--~~----------~~~i~~~~gd~~~~~--p- 123 (244)
+.+..+|||.|||+|.++..+++..+ ..+ ++++|+ +.+++.| +. .....+...|+++.. +
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~-IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQ-IWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGG-EEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCe-EEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc
Confidence 34568999999999999999998875 346 899999 8887776 21 022355666666531 2
Q ss_pred -cceEEEecccccc-CC-HHH-------------------------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 -VVDAIFMKWVLTT-WT-DDE-------------------------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 -~~D~v~~~~~lh~-~~-~~~-------------------------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|+++--.-. .. +.. ...+++++.+.|+|||+++++-+
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2599998755521 11 111 22468889999999999988653
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=73.15 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=71.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------------CCeeEEeCCCCCCCC------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------------PEVTHIGGDMFKSIH------ 123 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------------~~i~~~~gd~~~~~p------ 123 (244)
++.+||=||+|.|..++++++. |.-+ ++.+|+ |.+++.+++. +|++++.+|.++.+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~-V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCce-eEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 3589999999999999999975 5556 999999 9999988741 568999999865431
Q ss_pred -cceEEEeccccc-------cCCHH-HHHHHHHHHHHHcCCCCEEEEe
Q 041308 124 -VVDAIFMKWVLT-------TWTDD-ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 124 -~~D~v~~~~~lh-------~~~~~-~~~~~l~~~~~~L~pgG~lii~ 162 (244)
..|+|++-..-. ..... -...+++.++++|+|||.++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 249998753211 11111 1356789999999999999864
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-06 Score=71.49 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=64.5
Q ss_pred HHHhccCCCCCCc--ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHH-------HHhCCC-------C-CCeeEEe
Q 041308 54 TSVLDGYDGFKGV--KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEV-------VAKAPS-------I-PEVTHIG 115 (244)
Q Consensus 54 ~~l~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~-------i~~a~~-------~-~~i~~~~ 115 (244)
+.+++... .+++ .+|||+|||+|..+..++++. .+ ++++|. +.+ ++.++. . .+++++.
T Consensus 76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~g--~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASVG--CR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHHT--CC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 34555554 5566 899999999999999999883 47 999999 754 333321 1 4799999
Q ss_pred CCCCCC---CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC
Q 041308 116 GDMFKS---IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 116 gd~~~~---~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG 157 (244)
+|..+. ++. .|+|++.-.+++-. +. .++++..+.|++.+
T Consensus 152 ~D~~~~L~~~~~~fDvV~lDP~y~~~~-~s--aavkk~~~~lr~l~ 194 (258)
T 2oyr_A 152 ASSLTALTDITPRPQVVYLDPMFPHKQ-KS--ALVKKEMRVFQSLV 194 (258)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCCCCCC-C-------HHHHHHHHHS
T ss_pred CCHHHHHHhCcccCCEEEEcCCCCCcc-cc--hHHHHHHHHHHHhh
Confidence 998653 333 59999988776532 21 44555556665543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-06 Score=79.04 Aligned_cols=108 Identities=12% Similarity=-0.009 Sum_probs=74.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC---------------CCCeEEEeec-hHHHHhCCCC-------C
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC---------------FICEGINFDL-PEVVAKAPSI-------P 109 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~~D~-~~~i~~a~~~-------~ 109 (244)
++.+++.+. ..+ .+|||.+||+|.++..+.+... ..+ +.++|+ +.++..|+.+ .
T Consensus 234 v~lmv~ll~-p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 234 VTLIVEMLE-PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQIS-VYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHC-CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEE-EEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHh-cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhce-EEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 455555555 333 4999999999999888765432 456 899999 8888877742 3
Q ss_pred CeeEEeCCCCCC--CCc--ceEEEecccccc--CCH-----------------------H--HHHHHHHHHHHHcCCCCE
Q 041308 110 EVTHIGGDMFKS--IHV--VDAIFMKWVLTT--WTD-----------------------D--ECKLIMENYYKALLAGRK 158 (244)
Q Consensus 110 ~i~~~~gd~~~~--~p~--~D~v~~~~~lh~--~~~-----------------------~--~~~~~l~~~~~~L~pgG~ 158 (244)
++.+..+|.+.. .+. .|+|+++--+.. +.. . .-..+++++.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 455578887764 332 599998744432 111 0 012589999999999999
Q ss_pred EEEec
Q 041308 159 LIACE 163 (244)
Q Consensus 159 lii~d 163 (244)
++++-
T Consensus 391 ~aiVl 395 (544)
T 3khk_A 391 MALLL 395 (544)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=59.94 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=103.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCC-----------------------------CCCeeEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPS-----------------------------IPEVTHI 114 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~-----------------------------~~~i~~~ 114 (244)
+...|+-+|||.-.....+.... ++++ +.-+|.|++++.-++ .++..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~-~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSK-YFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSE-EEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCe-EEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 45799999999999998888753 5677 888898888764321 2678899
Q ss_pred eCCCCCC--C---------Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhc
Q 041308 115 GGDMFKS--I---------HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLE 181 (244)
Q Consensus 115 ~gd~~~~--~---------p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~ 181 (244)
..|+.+. + .. .-++++.-++..++++++..+++.+.+.. |+|.+++.|...+++ + ..+. ..
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d---~-fg~~-M~ 242 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGD---R-FGQI-MI 242 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTS---H-HHHH-HH
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCC---H-HHHH-HH
Confidence 9999763 2 11 26888999999999999999999999877 567777788875543 1 1100 00
Q ss_pred ccHhhhhhhccC-ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 182 GDIFVMTIYRAK-GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 182 ~d~~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+........+ ....+.++..++|.++||+.+++.++.
T Consensus 243 ~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 282 (334)
T 3iei_A 243 ENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMM 282 (334)
T ss_dssp HHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHH
T ss_pred HHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecHH
Confidence 001000000011 133578999999999999998876653
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.6e-05 Score=61.47 Aligned_cols=107 Identities=12% Similarity=-0.012 Sum_probs=63.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH--cCCCC-eEEEeechHHHHhCCCCCCe---eEEeC-CCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK--HCFIC-EGINFDLPEVVAKAPSIPEV---THIGG-DMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~-~~~~~D~~~~i~~a~~~~~i---~~~~g-d~~~~~p~-~ 125 (244)
.++-+.+ -+++..+|||+||++|.+++.++++ ...++ +++++|+ .+.......+.+ .+..+ |+++.-+. .
T Consensus 63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 4455665 4889999999999999999999986 21111 1344442 111111111344 55557 99875443 5
Q ss_pred eEEEecccc--ccCC-HHH-HHHHHHHHHHHcCCCC-EEEEe
Q 041308 126 DAIFMKWVL--TTWT-DDE-CKLIMENYYKALLAGR-KLIAC 162 (244)
Q Consensus 126 D~v~~~~~l--h~~~-~~~-~~~~l~~~~~~L~pgG-~lii~ 162 (244)
|+|++-..= -+.. |.. ...+|.=+.+.|+||| .|++-
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 999865321 1111 211 2235666778999999 88873
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.7e-05 Score=66.61 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=94.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeechHHHHhCCC---------CCCeeEEeCCCCCCCCc----------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDLPEVVAKAPS---------IPEVTHIGGDMFKSIHV---------- 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~~~~i~~a~~---------~~~i~~~~gd~~~~~p~---------- 124 (244)
+...||++|||--..+..+.. | +.+ +.-+|.|.+++..++ .++..++..|+.+.+..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~--~~~~~-v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW--PTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC--CTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred CCCeEEEeCCCCCchhhhccC--CCCcE-EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 446799999998888666542 4 467 888999988876653 26788999999864211
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc-cHhhhhh-----hccCcee-
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG-DIFVMTI-----YRAKGKH- 196 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~-d~~~~~~-----~~~~~~~- 196 (244)
.-++++..++|++++++...+++.+.+.+.||+.+++ |...++.. .......... ......+ ....-..
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 255 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYH 255 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTC
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccC
Confidence 2578899999999999999999999999999888776 44333221 0000000000 0000000 0001111
Q ss_pred cC-HHHHHHHHHhCCCCeE
Q 041308 197 KT-EQEFKQLGFSTGFPHL 214 (244)
Q Consensus 197 ~t-~~e~~~ll~~aGf~~~ 214 (244)
.+ .++..++|.+.||+.+
T Consensus 256 ~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 256 DENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CTTCCCHHHHHTTTTEEEE
T ss_pred CCChHHHHHHHHHCcCccc
Confidence 25 6789999999999988
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00012 Score=60.15 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=69.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHh---CCCC--CCeeEEeC-CCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAK---APSI--PEVTHIGG-DMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~---a~~~--~~i~~~~g-d~~~~~p~-~ 125 (244)
..+.+.+. +++..+|||+||++|.++..++.+..--+ +.++|+ ..--+. .++. .-|.+..+ |++...|. .
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~-V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQE-VRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEE-EEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCE-EEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 44666665 77888999999999999998887754445 999998 431110 0111 44888887 87554333 5
Q ss_pred eEEEeccccccCCHH-----HHHHHHHHHHHHcCCC-CEEEE
Q 041308 126 DAIFMKWVLTTWTDD-----ECKLIMENYYKALLAG-RKLIA 161 (244)
Q Consensus 126 D~v~~~~~lh~~~~~-----~~~~~l~~~~~~L~pg-G~lii 161 (244)
|+|++--. .--+.+ ...++|.-+.+.|++| |-++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 98886644 322221 2234677778899998 88887
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00012 Score=58.20 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=70.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHh---CCC--CCCeeEEeC-CCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAK---APS--IPEVTHIGG-DMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~---a~~--~~~i~~~~g-d~~~~~p~- 124 (244)
..++.+.+. +++..+|||+||++|.+++.++.+...-+ +.++|+ +.-.+. .+. ...++|..+ |++.-.|.
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~-V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTE-VRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCE-EEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 345666774 88888999999999999998887765446 999998 322111 011 177999999 87544333
Q ss_pred ceEEEeccccccCC---HH-HHHHHHHHHHHHcCCCCEEEE
Q 041308 125 VDAIFMKWVLTTWT---DD-ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 125 ~D~v~~~~~lh~~~---~~-~~~~~l~~~~~~L~pgG~lii 161 (244)
.|.|+|--.=-.-+ +. ...++|.-+.+.|++ |-++|
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 59888653321111 11 223467777788999 78877
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.1e-05 Score=69.04 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=71.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC---CCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC-CC---c--ce
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC---FICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS-IH---V--VD 126 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~-~p---~--~D 126 (244)
+..+|+|.+||+|.++..+.+... ..+ +.++|+ +.+...|+.+ +++.+..+|.+.. +| . .|
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVV-YFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCce-EEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 457999999999999999988743 456 999999 8888777642 4678999998865 33 2 49
Q ss_pred EEEeccccc-cC------------------C---HHHHHHHHHHHHHHcC-CCCEEEEec
Q 041308 127 AIFMKWVLT-TW------------------T---DDECKLIMENYYKALL-AGRKLIACE 163 (244)
Q Consensus 127 ~v~~~~~lh-~~------------------~---~~~~~~~l~~~~~~L~-pgG~lii~d 163 (244)
+|+++--+. .+ + ..+ ..++.++.+.|+ |||++.++-
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEE
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEe
Confidence 999763321 11 1 001 258999999999 999998764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.76 E-value=9.8e-06 Score=70.40 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=52.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-----cceEEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-----VVDAIF 129 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-----~~D~v~ 129 (244)
+++.+|||+|||+|..+..+++.. .+ ++++|. +.+++.++.+ .+++++.+|+.+.++ ..|+|+
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~g--~~-V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSKA--SQ-GIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTTC--SE-EEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 346899999999999999998764 46 999999 9999888753 469999999987532 249999
Q ss_pred ec
Q 041308 130 MK 131 (244)
Q Consensus 130 ~~ 131 (244)
+.
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 74
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.1e-05 Score=84.14 Aligned_cols=142 Identities=13% Similarity=0.007 Sum_probs=67.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC-----CCeEEEeec-hHHHHhCCCC-C--CeeEEeCCCCCC---CCc-ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF-----ICEGINFDL-PEVVAKAPSI-P--EVTHIGGDMFKS---IHV-VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~~D~-~~~i~~a~~~-~--~i~~~~gd~~~~---~p~-~D~v~~~ 131 (244)
+..+||+||.|+|..+..+++.... .+ .+..|. +...+.+++. . .++...-|..++ .+. .|+|+..
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~-yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLD-YTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEE-EEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccce-EEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 4579999999999887776665432 24 677898 7777777764 1 222221233222 122 4999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
+++|..++. ...|+++++.|||||++++.+...... ......+.... . ...+...+.++|.++|.++||
T Consensus 1319 ~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~--~--r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1319 CALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP--E--QGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp CC----------------------CCEEEEEEC-----------------------------------CTTTTSSTTTTE
T ss_pred ccccccccH--HHHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc--c--ccCCcccCHHHHHHHHHhCCC
Confidence 999865543 478999999999999999987542110 00000000000 0 011233567789999999999
Q ss_pred CeEEEEE
Q 041308 212 PHLRAFI 218 (244)
Q Consensus 212 ~~~~~~~ 218 (244)
+.+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9877643
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.2e-05 Score=55.55 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=57.5
Q ss_pred CCcceEEEEcCCcc-HHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC----cceEEEeccccccC
Q 041308 64 KGVKRLVDVGGSAG-DCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH----VVDAIFMKWVLTTW 137 (244)
Q Consensus 64 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p----~~D~v~~~~~lh~~ 137 (244)
.+..++||||||.| ..|..|++. .+.. ++++|+ |..++ ++..|+|++.. .+|+|...+-
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~-V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP---- 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVD-LVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP---- 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCE-EEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCe-EEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC----
Confidence 44579999999999 588888864 3567 999998 76554 89999999844 4599965432
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+.+...-+.++++.. |.-++|.-.
T Consensus 99 -P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 -PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp -CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred -CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 233344455565533 666776544
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.60 E-value=5.1e-05 Score=62.30 Aligned_cols=78 Identities=26% Similarity=0.271 Sum_probs=61.3
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC---CC-
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS---IH- 123 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~---~p- 123 (244)
-+.+++++.+. .++...+||++||.|..+..++++ +.+ ++++|. |.+++.+++. +|++++.+|+.+. +.
T Consensus 9 VLl~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~-VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 9 VLYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp TTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCE-EEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHH
Confidence 34677888887 778899999999999999999998 668 999999 9898776532 6899999998543 21
Q ss_pred ----cceEEEecc
Q 041308 124 ----VVDAIFMKW 132 (244)
Q Consensus 124 ----~~D~v~~~~ 132 (244)
..|.|++..
T Consensus 85 ~g~~~vDgIL~DL 97 (285)
T 1wg8_A 85 LGVERVDGILADL 97 (285)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCcCEEEeCC
Confidence 248887653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0002 Score=56.16 Aligned_cols=89 Identities=7% Similarity=-0.058 Sum_probs=61.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------CCCeeEEeCCCCCC------------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---------IPEVTHIGGDMFKS------------ 121 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------~~~i~~~~gd~~~~------------ 121 (244)
.+..+|||+||| ..+..+++ .++.+ ++.+|. +...+.+++ .++|+++.||..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~-VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKH-VTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCE-EEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 346899999984 55666665 45667 999998 888777764 24799999996542
Q ss_pred ------------CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 122 ------------IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 ------------~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+ ..|+|++---.. ...+..+.+.|+|||.+++ |.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~GG~Iv~-DN 154 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITRPVTLLF-DD 154 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSSCEEEEE-TT
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCCCeEEEE-eC
Confidence 11 249998775311 2456667799999998854 44
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00096 Score=61.96 Aligned_cols=148 Identities=15% Similarity=0.075 Sum_probs=102.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC--------CCCeEEEeechHHHHhCCCC----------------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC--------FICEGINFDLPEVVAKAPSI---------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~~D~~~~i~~a~~~---------------------------- 108 (244)
+...|+-+|||--.....+....+ +++ +.-+|.|++++.-++.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~-~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVS-FIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEE-EEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCE-EEECccHHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 467999999999999999987654 556 7778888777543320
Q ss_pred --CCeeEEeCCCCCC--C----------Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc
Q 041308 109 --PEVTHIGGDMFKS--I----------HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172 (244)
Q Consensus 109 --~~i~~~~gd~~~~--~----------p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~ 172 (244)
++..++..|+.+. + .. .-++++.-+|..++++++.++|+.+.+ + |++.+++.|...+.....
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC
Confidence 3789999999873 1 21 257888899999999999999999985 4 788888889876643222
Q ss_pred hHHhhhhhcccHhhhhh--hc-cCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 173 SQRTRALLEGDIFVMTI--YR-AKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 173 ~~~~~~~~~~d~~~~~~--~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
+ ..+ .+-.+.... .. ......+.++..+.|.++||+.+...++
T Consensus 264 ~-f~~---~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 P-FSK---QMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp H-HHH---HHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred h-HHH---HHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 2 111 111111000 00 0123447899999999999998776654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00049 Score=56.77 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=66.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-----CCCCeEEEeec-hHH--------------------------HHhCCC-----
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-----CFICEGINFDL-PEV--------------------------VAKAPS----- 107 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~-~~~--------------------------i~~a~~----- 107 (244)
.+.+|||+|+..|..+..+++.. ++.+ ++++|. ..+ ++.+++
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~k-I~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRT-VWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCC-EEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCE-EEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 35799999999999998887654 4667 999994 211 122221
Q ss_pred ---CCCeeEEeCCCCCCCCc-----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 108 ---IPEVTHIGGDMFKSIHV-----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 108 ---~~~i~~~~gd~~~~~p~-----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.++|+++.||+.+.+|. .|+|.+-.-. .+.....|..+...|+|||.+++=|
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 26899999999765442 3777766432 2334678999999999999888633
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00035 Score=58.15 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=75.8
Q ss_pred cceEEEEcCCccHHHHHHH----HHcCCCC-eEEEeechHHHHhCCC--------------------CCC--eeEEeCCC
Q 041308 66 VKRLVDVGGSAGDCLRIIL----QKHCFIC-EGINFDLPEVVAKAPS--------------------IPE--VTHIGGDM 118 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~----~~~p~~~-~~~~~D~~~~i~~a~~--------------------~~~--i~~~~gd~ 118 (244)
.-+|||+|=|||.++...+ +..|..+ .++.++. ..++.... ..+ +++..||+
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 4689999999999765433 4467655 0344442 11111000 023 35667887
Q ss_pred CCCCC---c--ceEEEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhcc
Q 041308 119 FKSIH---V--VDAIFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA 192 (244)
Q Consensus 119 ~~~~p---~--~D~v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 192 (244)
.+.++ . +|++++--+--.-.++ -...+|+++++.++|||.++-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence 55433 2 3887765322111111 12468899999999999887411
Q ss_pred CceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 193 KGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 193 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
....++.-|++|||++.++.-.+.-.-++++..
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~ 259 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASL 259 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence 123568889999999999877766566666654
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0002 Score=61.20 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=75.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------CCCeeEEeCCCCCC---CCc-c
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------IPEVTHIGGDMFKS---IHV-V 125 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------~~~i~~~~gd~~~~---~p~-~ 125 (244)
..++.+|||+++|.|.=+.++++..+..+ ++++|. +.-+...++ ..++.+...|.... .+. +
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~-l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRN-LAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEE-EEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCc-EEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 56788999999999999999998776666 899997 654433322 14678888887543 233 5
Q ss_pred eEEEeccc---------------cccCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCCCC
Q 041308 126 DAIFMKWV---------------LTTWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDDSN 171 (244)
Q Consensus 126 D~v~~~~~---------------lh~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~ 171 (244)
|.|++--- ...+..++ ..++|+++.+.|||||+|+-..+.+....+
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~EN 292 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQN 292 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTT
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhC
Confidence 88884211 11122221 246899999999999999988887765533
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00049 Score=57.86 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=58.8
Q ss_pred cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCC
Q 041308 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFK 120 (244)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~ 120 (244)
..-+.+++++.+. .+++..++|..+|.|..+..++++. |+.+ ++++|. |.+++.++.. +|++++.+++.+
T Consensus 42 ~pVLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~Gr-Vig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 42 TTVLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGR-LLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp CCTTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred ccccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3345788889887 7888999999999999999999885 7788 999999 9999887532 688999988854
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0027 Score=57.10 Aligned_cols=110 Identities=9% Similarity=-0.025 Sum_probs=72.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-------------CCCCeEEEeec-hHHHHhCCCC------CCe
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-------------CFICEGINFDL-PEVVAKAPSI------PEV 111 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~~D~-~~~i~~a~~~------~~i 111 (244)
+++.+++.++ .....+|+|-+||||.++..+.+.. .... +.|+|+ +.+...|+-+ +.-
T Consensus 205 Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~-i~G~E~~~~~~~la~mNl~lhg~~~~ 282 (530)
T 3ufb_A 205 VVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESS-IFGGEAKSLPYLLVQMNLLLHGLEYP 282 (530)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCC-EEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhh-hhhhhccHHHHHHHHHHHHhcCCccc
Confidence 3455666665 4556799999999999988776542 1345 889998 7777666632 344
Q ss_pred eEEeCCCCCC-C----C--cceEEEecccccc-CC-------------HHHHHHHHHHHHHHcC-------CCCEEEEec
Q 041308 112 THIGGDMFKS-I----H--VVDAIFMKWVLTT-WT-------------DDECKLIMENYYKALL-------AGRKLIACE 163 (244)
Q Consensus 112 ~~~~gd~~~~-~----p--~~D~v~~~~~lh~-~~-------------~~~~~~~l~~~~~~L~-------pgG~lii~d 163 (244)
++..+|.+.. . + ..|+|+.+--+.. +. .+....++.++.+.|| |||++.++-
T Consensus 283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 5677887653 1 1 2499998765521 11 1112356888888887 699988864
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00097 Score=56.75 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=42.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC---CCCCeeEEeCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP---SIPEVTHIGGDMFK 120 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~---~~~~i~~~~gd~~~ 120 (244)
+...|||||.|.|.++..|+++...-+ ++++++ +..++..+ ..++++++.+|+++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~-vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCE-EEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 358999999999999999998753345 888887 66655443 24799999999964
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0024 Score=52.54 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCCcceEEEEcC------CccHHHHHHHHHcCC-CCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-C-CcceEEEecc-
Q 041308 63 FKGVKRLVDVGG------SAGDCLRIILQKHCF-ICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-I-HVVDAIFMKW- 132 (244)
Q Consensus 63 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~-p~~D~v~~~~- 132 (244)
.+.+.+|||+|+ .+|.+ .+.+..|. .. ++.+|+.++... .. .++.||+.+. . ...|+|++-.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~-VVavDL~~~~sd----a~-~~IqGD~~~~~~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTL-LVDSDLNDFVSD----AD-STLIGDCATVHTANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCE-EEEEESSCCBCS----SS-EEEESCGGGEEESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcE-EEEeeCcccccC----CC-eEEEccccccccCCCCCEEEecCC
Confidence 456789999996 67874 33344676 57 999999444321 22 4489998654 2 2249998532
Q ss_pred --ccccCC------HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 133 --VLTTWT------DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 133 --~lh~~~------~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.-.+.. ..-+..++.=+.+.|+|||.|++-
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 222211 113556677788899999999984
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=54.10 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=39.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
++.+++.+. .++..|||++||+|.++..+.+.. .+ ++++|+ +.+++.+++
T Consensus 225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~-~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RR-ALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHHH
Confidence 455555543 456899999999999999988764 45 999999 999988875
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.021 Score=46.26 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=81.7
Q ss_pred cceEEEEcCCccHHHHHHHHH-------cCCCCeEEEeec-hHHHH----------------------------------
Q 041308 66 VKRLVDVGGSAGDCLRIILQK-------HCFICEGINFDL-PEVVA---------------------------------- 103 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~~D~-~~~i~---------------------------------- 103 (244)
...|+|+|+-.|..+..+++. .++-+ +.++|. ..+-+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~-v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRR-IVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCC-EEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCE-EEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 479999999999988886642 34456 999992 11110
Q ss_pred hCCC----CCCeeEEeCCCCCCCCc---------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC
Q 041308 104 KAPS----IPEVTHIGGDMFKSIHV---------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS 170 (244)
Q Consensus 104 ~a~~----~~~i~~~~gd~~~~~p~---------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~ 170 (244)
..+. .++|+++.|++.+.+|. .|++.+-.- . .+.....+..+...|+|||.+++=|...+.-
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~-Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w- 223 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---L-YEPTKAVLEAIRPYLTKGSIVAFDELDNPKW- 223 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---C-HHHHHHHHHHHGGGEEEEEEEEESSTTCTTC-
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---c-cchHHHHHHHHHHHhCCCcEEEEcCCCCCCC-
Confidence 0011 27899999999765432 266665542 1 2335678999999999999999755321110
Q ss_pred CchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEE
Q 041308 171 NESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLF 225 (244)
Q Consensus 171 ~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~ 225 (244)
+ | ..+.|.+.+.+.|.++...-..+.+..+
T Consensus 224 --~--------------------G---~~~A~~ef~~~~~~~i~~~p~~~~~~y~ 253 (257)
T 3tos_A 224 --P--------------------G---ENIAMRKVLGLDHAPLRLLPGRPAPAYL 253 (257)
T ss_dssp --T--------------------H---HHHHHHHHTCTTSSCCEECTTCSCCEEE
T ss_pred --h--------------------H---HHHHHHHHHhhCCCeEEEccCCCCCEEE
Confidence 0 0 1456788888888877766444444333
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.21 Score=41.57 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=57.9
Q ss_pred ceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-CCCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-SIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+|.=||+| .+.++..+.+.....+ ++++|. +..++.+++..-+.-...|..+ ....+|+|++. .++...
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~-V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 689999987 3445666666554336 899998 7776666543332223344433 34446998876 344556
Q ss_pred HHHHHHHHHHcCCCCEEEEe
Q 041308 143 KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~ 162 (244)
..+++++...++||..++-+
T Consensus 108 ~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhhccCCCcEEEEC
Confidence 67889999999998765543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.041 Score=44.49 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
+++.+++.+. .++..|||..||+|.++.+..+.. -+ ++++|+ +..++.+++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~g--r~-~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLG--RN-FIGCDMNAEYVNQANF 252 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHHH
Confidence 4555666543 456899999999999999988764 45 999999 888877654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.032 Score=51.65 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=71.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-------CC-----CCeEEEeec-h---HHHHh-CCC--------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-------CF-----ICEGINFDL-P---EVVAK-APS-------------------- 107 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~~D~-~---~~i~~-a~~-------------------- 107 (244)
+.-+|+|+|-|+|.+...+.+.. |. ++ ++.++. | ..+.. ...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~-~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLH-YISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEE-EEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 34699999999999988877653 22 55 677774 3 11111 000
Q ss_pred ----------CCCeeEEeCCCCCCCC--------cceEEEeccccccCCH-HHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 108 ----------IPEVTHIGGDMFKSIH--------VVDAIFMKWVLTTWTD-DECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 108 ----------~~~i~~~~gd~~~~~p--------~~D~v~~~~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.-++++..||..+.++ .+|++++--+--.-.+ --...+++.+.+.++|||.+.-.-.
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~---- 212 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTA---- 212 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCC----
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccC----
Confidence 0145667788755322 1487776432111000 0014678888888899887763110
Q ss_pred CCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 169 DSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+++.+.++||.+.+.....
T Consensus 213 ------------------------------~~~vr~~l~~aGf~~~~~~~~~ 234 (689)
T 3pvc_A 213 ------------------------------AGFVRRGLQQAGFNVTKVKGFG 234 (689)
T ss_dssp ------------------------------CHHHHHHHHHTTCEEEEEECSS
T ss_pred ------------------------------cHHHHHHHHhCCeEEEeccCCC
Confidence 1346778889999988876443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.31 Score=41.67 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=66.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----C-------CcceEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----I-------HVVDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~-------p~~D~v~~~~~ 133 (244)
-+++|+-||.|.++..+.+.. .+.+.++|. +..++..+.+ +...++.+|+.+. + +..|+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 479999999999999999876 442468888 7776666553 6778888998654 2 22499998877
Q ss_pred cccCC-------HHHHHHHHH---HHHHHcCCCCEEEEecccCC
Q 041308 134 LTTWT-------DDECKLIME---NYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 134 lh~~~-------~~~~~~~l~---~~~~~L~pgG~lii~d~~~~ 167 (244)
+..++ ++..-.++. ++.+.++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchH
Confidence 76665 122223444 34455667 6777777543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.13 Score=43.46 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=50.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCC----C--cceEEEeccccccC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSI----H--VVDAIFMKWVLTTW 137 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~----p--~~D~v~~~~~lh~~ 137 (244)
..+++|+-||.|.+...+.+..-+.+.+.++|. +..++..+.+ +...++.+|+.+-. + ..|+++...-+..+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 358999999999999999988633332688898 8777777654 55667888986542 3 24999988776555
Q ss_pred C
Q 041308 138 T 138 (244)
Q Consensus 138 ~ 138 (244)
+
T Consensus 82 S 82 (343)
T 1g55_A 82 T 82 (343)
T ss_dssp -
T ss_pred h
Confidence 5
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.11 Score=38.54 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=62.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeech-HHHHhCCCCCCeeEEeCCCCCCCCc-----c-eEEE--ecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLP-EVVAKAPSIPEVTHIGGDMFKSIHV-----V-DAIF--MKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~-~~i~~a~~~~~i~~~~gd~~~~~p~-----~-D~v~--~~~~lh~ 136 (244)
..-|||+|=|+|..=-++.+.+|+-+ +.++|.. ..-..+.. +.-.++.||+.+.+|. + .+.+ .-.-.|+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~-I~vfDR~~~~hp~~~P-~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~ 118 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGRE-IYVFERAVASHPDSTP-PEAQLILGDIRETLPATLERFGATASLVHADLGGHN 118 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSC-EEEEESSCCCCGGGCC-CGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSC
T ss_pred CCceEEecCCCChhHHHHHHhCCCCc-EEEEEeeeccCCCCCC-chHheecccHHHHHHHHHHhcCCceEEEEeecCCCC
Confidence 37899999999999999999999999 9999962 11111111 4557888998776553 2 3333 3333332
Q ss_pred CCHHH---HHHHHHHHHHHcCCCCEEEEeccc
Q 041308 137 WTDDE---CKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 137 ~~~~~---~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.+.+ +..+---+..+|.|||.++.-+..
T Consensus 119 -~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 119 -REKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp -HHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred -cchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 2221 112223456778899988876554
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.14 Score=47.08 Aligned_cols=121 Identities=14% Similarity=0.028 Sum_probs=71.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-------C-----CCCeEEEeec----hHHHH-hCCC--------------C-----
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-------C-----FICEGINFDL----PEVVA-KAPS--------------I----- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~~D~----~~~i~-~a~~--------------~----- 108 (244)
+.-+|+|+|-|||.+.....+.. | .++ ++.++. ++.+. .... .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~-~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEE-EEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 34599999999999988876653 2 245 677764 22222 1110 0
Q ss_pred -----------CCeeEEeCCCCCCCC--------cceEEEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 109 -----------PEVTHIGGDMFKSIH--------VVDAIFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 109 -----------~~i~~~~gd~~~~~p--------~~D~v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
-++++..||..+.++ ..|++++--+--.-.++ -...+++++++.++|||.+...-.
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~---- 220 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 220 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC----
Confidence 123456677654322 14888764322111111 124688999999999988774111
Q ss_pred CCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 169 DSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+++.+.++||.+.+.....
T Consensus 221 ------------------------------~~~vr~~L~~aGf~v~~~~~~g 242 (676)
T 3ps9_A 221 ------------------------------AGFVRRGLQDAGFTMQKRKGFG 242 (676)
T ss_dssp ------------------------------CHHHHHHHHHHTCEEEEEECST
T ss_pred ------------------------------cHHHHHHHHhCCeEEEeccccc
Confidence 1245777889999887765443
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.14 Score=42.88 Aligned_cols=125 Identities=14% Similarity=0.024 Sum_probs=80.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeE-EEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CCc--ceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEG-INFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~-~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p~--~D~v~~~~~lh~ 136 (244)
.-+++|+-||.|.+...+.+..-+.+.+ .++|. +..++..+.+ +.. +..+|+.+- ++. .|+++...-+..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~ 88 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQP 88 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCccC
Confidence 4689999999999999999876434513 48898 7776665544 222 567888654 332 499998877766
Q ss_pred C--C--------HHHHHHHHHHHHH-HcCC---CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 137 W--T--------DDECKLIMENYYK-ALLA---GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 137 ~--~--------~~~~~~~l~~~~~-~L~p---gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
+ + ++..-.++.++.+ .++- .-+++++|.+..-. .+ .+.+.+
T Consensus 89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~-----------------------~~--~~~~~i 143 (327)
T 3qv2_A 89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFK-----------------------ES--LVFKEI 143 (327)
T ss_dssp CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGG-----------------------GS--HHHHHH
T ss_pred cccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhc-----------------------Ch--HHHHHH
Confidence 6 2 1222356666666 5432 23677777643210 00 235677
Q ss_pred HHHHHhCCCCeEEE
Q 041308 203 KQLGFSTGFPHLRA 216 (244)
Q Consensus 203 ~~ll~~aGf~~~~~ 216 (244)
.+.|++.|+.+...
T Consensus 144 ~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 144 YNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHhCCCEEEEE
Confidence 88889999986554
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.39 Score=41.10 Aligned_cols=101 Identities=16% Similarity=0.012 Sum_probs=64.4
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC---CC-CCCC----C--c
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG---DM-FKSI----H--V 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~-~~~~----p--~ 124 (244)
+... ++++.+||-+|+|. |.++..+++.. +. + ++++|. +..++.+++..- +++.. |+ .+.+ + .
T Consensus 179 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 179 VSAG-VKPGSHVYIAGAGPVGRCAAAGARLL-GAAC-VIVGDQNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHH-TCSE-EEEEESCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEEcCCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCCC
Confidence 4444 77889999999876 88999999875 45 6 899997 777777776432 33321 11 1101 1 1
Q ss_pred ceEEEecccccc---------CCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 VDAIFMKWVLTT---------WTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 ~D~v~~~~~lh~---------~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|+-.---.. .++ ...++.+.+.|+|||+++++-..
T Consensus 255 ~Dvvid~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 255 VDCGVDAVGFEAHGLGDEANTETP---NGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp EEEEEECSCTTCBCSGGGTTSBCT---THHHHHHHHHEEEEEEEECCSCC
T ss_pred CCEEEECCCCcccccccccccccc---HHHHHHHHHHHhcCCEEEEeccc
Confidence 388774432110 011 13578889999999999887543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.7 Score=39.93 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=58.1
Q ss_pred cceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
..+|+=+|+|. |......+.. .+.. ++++|. +..++.+++ ..+.++.||..++ + ..+|+|++..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~-~g~~-vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~---- 76 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS-SGVK-MVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI---- 76 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-TTCC-EEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECC----
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCC-EEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECC----
Confidence 45788898863 4433333333 2466 999999 888887765 4677889999765 2 2358777542
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++.-..+-...+.+.|..+++..
T Consensus 77 -~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 77 -DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp -SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred -CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 3344445556677778898777763
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.61 Score=39.41 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=61.5
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCCC----C-cceE
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKSI----H-VVDA 127 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~~----p-~~D~ 127 (244)
+... .++..+||-+|+|. |..+..+++....-+ ++++|. +.-++.+++..--.++.. |+.+.+ + ..|+
T Consensus 184 ~~~~-~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 184 NALK-VTPASSFVTWGAGAVGLSALLAAKVCGASI-IIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSE-EEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 4444 67789999999885 888888888753225 888887 777666654321122221 111111 1 1377
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+-.-- .. ..++.+.+.|+|||+++++-..
T Consensus 262 vid~~g-----~~---~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 262 ALESTG-----SP---EILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp EEECSC-----CH---HHHHHHHHTEEEEEEEEECCCC
T ss_pred EEECCC-----CH---HHHHHHHHHHhcCCEEEEeCCC
Confidence 763321 12 4578889999999999987543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=90.74 E-value=1.1 Score=36.37 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=53.5
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
.+|.=||+|. +.++..+.+..+..+ +++.|. +...+.+++...+.....|..+....+|+|++. .++....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 80 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYK-IVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTI 80 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHH
Confidence 4788899884 334555666544567 889998 666554433222112233443334456998876 4555556
Q ss_pred HHHHHHHHH-cCCCCEEE
Q 041308 144 LIMENYYKA-LLAGRKLI 160 (244)
Q Consensus 144 ~~l~~~~~~-L~pgG~li 160 (244)
.+++++... ++||..++
T Consensus 81 ~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 81 DFIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHHTSCCCTTCEEE
T ss_pred HHHHHHHhcCCCCCCEEE
Confidence 788888877 88876555
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=90.74 E-value=1.4 Score=36.88 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=58.9
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCC------CCCCC----C-cceEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGD------MFKSI----H-VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd------~~~~~----p-~~D~v 128 (244)
.+++.+||-+|+|. |..+..+++.. +. + ++++|. +.-.+.+++..--.++..+ ..+.+ + ..|+|
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~v 246 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQ-VVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 246 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEE
Confidence 67789999999874 88888888875 45 6 888987 6666666643211222211 10011 1 13877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-.- ..+ ..++.+.+.|+|||+++++-.
T Consensus 247 id~~-----g~~---~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 247 IECT-----GAE---ASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EECS-----CCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred EECC-----CCh---HHHHHHHHHhcCCCEEEEEec
Confidence 6332 222 356788899999999998754
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=90.20 E-value=0.41 Score=41.34 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCCcceEEEEcCCccHHHHHHH-HHcCC-CCeEEEeec-hHHHHhCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIIL-QKHCF-ICEGINFDL-PEVVAKAP 106 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~~D~-~~~i~~a~ 106 (244)
+++...++|||++.|.++..++ +..+. .+ +++++. |...+..+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~-V~afEP~p~~~~~L~ 269 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFER-VWMIEPDRINLQTLQ 269 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSE-EEEECCCHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHH
Confidence 3677899999999999999988 56665 57 999998 77665554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.65 Score=38.66 Aligned_cols=90 Identities=8% Similarity=-0.039 Sum_probs=60.7
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-CC--------CcceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-SI--------HVVDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~~--------p~~D~v~~~ 131 (244)
.++..+||-+|+| .|..+..+++.. +.+ ++++|. +.-.+.+++..--.++. ..+ ++ +..|+++-.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~i~--~~~~~~~~~~~~~~g~~d~vid~ 239 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLR-VAAVDIDDAKLNLARRLGAEVAVN--ARDTDPAAWLQKEIGGAHGVLVT 239 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEE--TTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHcCCCEEEe--CCCcCHHHHHHHhCCCCCEEEEe
Confidence 6778999999986 489999999876 557 999998 77777776542212222 211 11 123776643
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.. . ...++.+.+.|+|||+++++-.
T Consensus 240 ~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 240 AV-----S---PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp SC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred CC-----C---HHHHHHHHHHhccCCEEEEeCC
Confidence 22 1 2467889999999999998754
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.92 E-value=1.2 Score=35.93 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=52.5
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCHHHHH
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~~~~~ 143 (244)
+|.=||+|. |. ++..+.+.....+ ++++|. +..++.+++..-......|..+.+. .+|+|++. .++....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 76 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 76 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHH
Confidence 577788773 33 3444444332236 888998 6666555432211111233322244 56988865 5556667
Q ss_pred HHHHHHHHHcCCCCEEEEe
Q 041308 144 LIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii~ 162 (244)
.+++++...++|+..++.+
T Consensus 77 ~v~~~l~~~l~~~~iv~~~ 95 (281)
T 2g5c_A 77 EIAKKLSYILSEDATVTDQ 95 (281)
T ss_dssp HHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhhCCCCcEEEEC
Confidence 8888898889998765543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.64 E-value=2.3 Score=31.72 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=51.4
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--------CCcceEEEeccccc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--------IHVVDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--------~p~~D~v~~~~~lh 135 (244)
..+|+=+|+| .|......+....+.+ ++++|. +..++.+++ ..+.++.+|..++ +..+|+|+...
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~--- 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAM--- 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECC---
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC---
Confidence 4689999886 3443333222210346 899998 766665553 3566777887542 12358777542
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++....+-...+.+.|...++..
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 114 --PHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp --SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred --CChHHHHHHHHHHHHHCCCCEEEEE
Confidence 2222223334466677888887763
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=5 Score=28.98 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=53.2
Q ss_pred CCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCcceEEEecccc
Q 041308 64 KGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHVVDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~~D~v~~~~~l 134 (244)
....+|+=+|+|. |......+... +.+ ++++|. +..++.++....+.++.+|..++ +..+|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~-V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~-- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHS-VVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT-- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS--
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCe-EEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe--
Confidence 4457999999863 44333333332 346 899998 77777666233456677776432 12248877652
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+++.....+..+.+.+.|..+++.
T Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 93 ---NDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ---SCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ---CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 233334455556666666666655
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=88.74 E-value=3.7 Score=31.94 Aligned_cols=88 Identities=10% Similarity=-0.004 Sum_probs=56.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCcceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHVVDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~~D~v~~~~~l 134 (244)
+...+++=+|+ |..+..+++..... . ++++|. +..++.++ ..+.++.||..++ +..+|+|++.
T Consensus 7 ~~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~--- 78 (234)
T 2aef_A 7 AKSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVD--- 78 (234)
T ss_dssp ---CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEEC---
T ss_pred CCCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEc---
Confidence 34468898887 67778887776432 3 677787 76666555 5688999998754 2235887754
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.++++.-.......+.+.|+.+++.
T Consensus 79 --~~~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 79 --LESDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp --CSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred --CCCcHHHHHHHHHHHHHCCCCeEEE
Confidence 2333333445566777888767665
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.56 E-value=3.2 Score=28.95 Aligned_cols=86 Identities=19% Similarity=0.083 Sum_probs=49.4
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCcceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHVVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~~D~v~~~~~lh~ 136 (244)
.+|+=+|+| ..+..+++.. .+.+ ++++|. +..++..++...+.++.+|..++ +..+|+|+..-
T Consensus 5 m~i~IiG~G--~iG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 5 MYIIIAGIG--RVGYTLAKSLSEKGHD-IVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CEEEEECCC--HHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 578888874 4444444332 2356 888998 66655444323566777887542 22358877652
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++....+..+.+.++++ ++++
T Consensus 78 -~~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred -CCchHHHHHHHHHHHcCCC-EEEE
Confidence 2233334455666778885 4443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.29 E-value=1.3 Score=37.47 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=64.1
Q ss_pred HhccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC-CCCCC--------C-
Q 041308 56 VLDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD-MFKSI--------H- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd-~~~~~--------p- 123 (244)
+.+... .++..+||-+|+| .|..+..+++...--+ ++++|. +.-++.+++..--.++... ..+++ +
T Consensus 185 l~~~~~-~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~g 262 (378)
T 3uko_A 185 VWNTAK-VEPGSNVAIFGLGTVGLAVAEGAKTAGASR-IIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDG 262 (378)
T ss_dssp HHTTTC-CCTTCCEEEECCSHHHHHHHHHHHHHTCSC-EEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHhhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCC
Confidence 334444 7778999999987 5888888888763336 999997 7777777765222222111 00111 1
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEeccc
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEPV 165 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~~ 165 (244)
..|+|+-. .... ..++.+.+.|+|| |+++++-..
T Consensus 263 g~D~vid~-----~g~~---~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 263 GVDYSFEC-----IGNV---SVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp CBSEEEEC-----SCCH---HHHHHHHHTBCTTTCEEEECSCC
T ss_pred CCCEEEEC-----CCCH---HHHHHHHHHhhccCCEEEEEccc
Confidence 13777743 2222 4578899999997 999987653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=0.81 Score=38.17 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=62.2
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC--CCCCC----C--cceEEEecc
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD--MFKSI----H--VVDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd--~~~~~----p--~~D~v~~~~ 132 (244)
.++..+||-+|+|. |..+..+++.....+ ++++|. +.-.+.+++..--.++..+ ..+.+ + ..|+|+-.
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~-Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~- 246 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAAR-VIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF- 246 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCE-EEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC-
Confidence 56788999999874 888999998775667 999998 7777777654222222211 11111 1 13777633
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...+ ..++.+.+.|+|||+++++-..
T Consensus 247 ----~G~~---~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 247 ----VGAQ---STIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp ----SCCH---HHHHHHHHHEEEEEEEEECSCC
T ss_pred ----CCCH---HHHHHHHHHHhcCCEEEEECCC
Confidence 2222 4678899999999999987643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.24 E-value=1.2 Score=37.54 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=58.6
Q ss_pred CcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------C-Cc-ceEEEecc
Q 041308 65 GVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------I-HV-VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~-p~-~D~v~~~~ 132 (244)
++.+||=+| +|.|..+..+++.....+ ++++|. +.-.+.+++..--.++ |..++ + +. .|+|+-.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~-Vi~~~~~~~~~~~~~~lGad~vi--~~~~~~~~~v~~~~~~g~Dvvid~- 246 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLT-VIATASRPETQEWVKSLGAHHVI--DHSKPLAAEVAALGLGAPAFVFST- 246 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSE-EEEECSSHHHHHHHHHTTCSEEE--CTTSCHHHHHHTTCSCCEEEEEEC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHcCCCEEE--eCCCCHHHHHHHhcCCCceEEEEC-
Confidence 678999998 357889999998755678 999998 7767766654221222 22111 1 11 3777643
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+ ..++.+.+.|+|||+++++.
T Consensus 247 ----~g~~---~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 247 ----THTD---KHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp ----SCHH---HHHHHHHHHSCTTCEEEECS
T ss_pred ----CCch---hhHHHHHHHhcCCCEEEEEC
Confidence 2222 46788999999999999873
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=88.23 E-value=3.8 Score=29.11 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=54.4
Q ss_pred cceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
..+|+=+|+|. |......+.. .+.+ ++++|. ++.++.+++ ..+.++.||..++ + ..+|++++..-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~-v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~--- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIP-LVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP--- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCC-EEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence 36899999863 4433333333 2456 999998 877776665 5778889998764 2 22587775422
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++.+... +-...+.+.|+.+++.
T Consensus 81 -~~~~n~~-~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 -NGYEAGE-IVASARAKNPDIEIIA 103 (140)
T ss_dssp -CHHHHHH-HHHHHHHHCSSSEEEE
T ss_pred -ChHHHHH-HHHHHHHHCCCCeEEE
Confidence 1233333 3345666788887665
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.19 E-value=0.49 Score=39.61 Aligned_cols=90 Identities=14% Similarity=-0.019 Sum_probs=59.7
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~ 139 (244)
.+++.+||-+|+|. |..+..+++.. +.+ ++++|. +.-.+.+++..--.++ .|. +.+. ..|+|+-.-- .
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g-----~ 244 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAE-VSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIP-----T 244 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCE-EEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCC-----S
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCC-----c
Confidence 77789999999874 88888888875 567 999887 6666666654222222 221 1122 2487774322 1
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..++.+.+.|+|||+++++-.
T Consensus 245 ~---~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 245 H---YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp C---CCHHHHHTTEEEEEEEEECCC
T ss_pred H---HHHHHHHHHHhcCCEEEEECC
Confidence 1 246778889999999999754
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=88.05 E-value=0.61 Score=38.13 Aligned_cols=97 Identities=12% Similarity=-0.058 Sum_probs=69.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC----CCc---ceEEEeccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS----IHV---VDAIFMKWV 133 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~----~p~---~D~v~~~~~ 133 (244)
...+||+=+|||.+++++++. .-+ ++.+|. +..++..+++ .++++..+|.++. .|. .|+|++---
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~-~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDR-LYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSE-EEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCe-EEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 467899999999999999983 345 999999 8777776664 6799999997553 232 499998876
Q ss_pred cccCCHHHHHHHHHHHHH--HcCCCCEEEEecccCC
Q 041308 134 LTTWTDDECKLIMENYYK--ALLAGRKLIACEPVLP 167 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d~~~~ 167 (244)
...-. +..++++.+.+ .+.|+|.+++--++.+
T Consensus 169 Ye~k~--~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 169 YERKE--EYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CCSTT--HHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCCCc--HHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 65322 23344544444 4568999998665543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.78 E-value=1.2 Score=37.99 Aligned_cols=96 Identities=13% Similarity=-0.067 Sum_probs=61.5
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC----C----C--cceEEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS----I----H--VVDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~----~----p--~~D~v~ 129 (244)
++++.+||-+|+|. |.++..+++.. +. + ++++|. +.-++.+++..- +++..+-.+. + + ..|+|+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~-Vi~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLL-GAAV-VIVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCCe-EEEEcCCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 67789999999874 88899999875 44 5 888887 777777765422 3332111011 1 1 138877
Q ss_pred eccc----------cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWV----------LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~----------lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-.-- .|+-.+ ...++.+.+.|++||+++++-.
T Consensus 260 d~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAP---ATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCT---THHHHHHHHHEEEEEEEEECSC
T ss_pred ECCCCcccccccccccccch---HHHHHHHHHHHhcCCEEEEecc
Confidence 4422 222212 2457889999999999988754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=87.60 E-value=1.5 Score=33.15 Aligned_cols=89 Identities=10% Similarity=-0.055 Sum_probs=55.6
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---------CC-c-ceEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---------IH-V-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---------~p-~-~D~v 128 (244)
.++..+||..|+ |.|..+..+++.. +.+ ++++|. ++..+.+++...-... |..+. .. . .|++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~-V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GAR-IYTTAGSDAKREMLSRLGVEYVG--DSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHTTCCSEEE--ETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCCEEe--eCCcHHHHHHHHHHhCCCCCeEE
Confidence 677889999994 5677777776654 357 888888 6666555443211111 22211 11 1 3777
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-+. .. ..++.+.+.|+|||+++++-.
T Consensus 112 i~~~-----g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 112 LNSL-----AG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EECC-----CT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EECC-----ch----HHHHHHHHHhccCCEEEEEcC
Confidence 7432 11 347888899999999998754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=1.5 Score=36.97 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=59.4
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEe---CCCC----C---CCC-cceEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIG---GDMF----K---SIH-VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~----~---~~p-~~D~v 128 (244)
.+++.+||-+|+|. |.++..+++.. +. + ++++|. +.-.+.+++..--.++. .|+. + ..+ ..|+|
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvv 257 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLA-GATT-VILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVV 257 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEE
Confidence 67789999999874 88888888875 44 6 888887 76666666432111221 1110 0 111 13877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+-. .... ..++.+.+.|+|||+++++-..
T Consensus 258 id~-----~G~~---~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 258 IEC-----AGVA---ETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp EEC-----SCCH---HHHHHHHHHEEEEEEEEECSCC
T ss_pred EEC-----CCCH---HHHHHHHHHhccCCEEEEEecc
Confidence 743 2212 4578889999999999987654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.39 E-value=3.7 Score=29.01 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=50.6
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
.+++=+|+| .++..+++.. .+.+ ++++|. +..++.+++ ..+.++.+|..++ + ..+|+|+...-
T Consensus 7 ~~v~I~G~G--~iG~~la~~L~~~g~~-V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~--- 79 (141)
T 3llv_A 7 YEYIVIGSE--AAGVGLVRELTAAGKK-VLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITGS--- 79 (141)
T ss_dssp CSEEEECCS--HHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECCS---
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEecC---
Confidence 578999985 3544444432 2456 999998 777666554 4578888998764 2 23587775432
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+++. ...+....+.+. ..+++.
T Consensus 80 -~~~~-n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 80 -DDEF-NLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp -CHHH-HHHHHHHHHHHC-CCCEEE
T ss_pred -CHHH-HHHHHHHHHHhC-CceEEE
Confidence 2333 333444555566 455544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.35 E-value=1.8 Score=33.35 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=54.1
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEeccccccC
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTTW 137 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~~ 137 (244)
+|+=+|+ |.++..+++.. .+.. ++++|. ++.++...+...+.++.+|..++ + ..+|++++. .
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~-v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~ 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYG-VVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVIL-----T 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEEC-----C
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEe-----c
Confidence 4666775 56666655543 2456 899998 77666543334678899998764 2 235888754 2
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++...++....+.+.|..+++.
T Consensus 74 ~~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 74 PRDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp SCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 334444556666666777777665
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.22 E-value=3.3 Score=34.24 Aligned_cols=95 Identities=12% Similarity=-0.031 Sum_probs=58.9
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC------CCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS------IHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~------~p~---~D~v~~~ 131 (244)
.++..+||=.|+| .|.++..+++....-. ++++|. +.-++.+++..--.++..+-.+. +.. .|+|+-.
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~-vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~ 236 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKS-VTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILET 236 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEEC
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcE-EEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccc
Confidence 6678999999986 4667777777654334 678887 77777777653333332111110 111 2665533
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
. ... ..++.+.+.|+|||++++.-...
T Consensus 237 ~-----G~~---~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 237 A-----GVP---QTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp S-----CSH---HHHHHHHHHCCTTCEEEECCCCS
T ss_pred c-----ccc---chhhhhhheecCCeEEEEEeccC
Confidence 2 112 45788889999999999876543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=86.43 E-value=0.71 Score=39.54 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc-------CCCCeEEEeec-hHHH
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH-------CFICEGINFDL-PEVV 102 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~~D~-~~~i 102 (244)
+..-+|+|+|+|+|.++..+++.. ..++ +++++. |...
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~-y~iVE~Sp~Lr 124 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEINPVLR 124 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECCCHHHH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccE-EEEEecCHHHH
Confidence 344689999999999999988652 2346 888998 5443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.08 E-value=5.8 Score=32.98 Aligned_cols=92 Identities=9% Similarity=-0.062 Sum_probs=58.5
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC----CCCCC----CC----c-ceE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG----DMFKS----IH----V-VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g----d~~~~----~p----~-~D~ 127 (244)
.++..+||-+|+|. |..+..+++.. +.+ ++++|. +.-.+.+++..--.++.. |..+. .+ . .|+
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~ 243 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 243 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCE-EEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCE
Confidence 67789999999874 78888888765 567 888887 766666654321122221 11111 11 2 387
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+-.. ... ..++.+.+.|+|||+++++-.
T Consensus 244 vid~~-----g~~---~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 244 TIDCS-----GNE---KCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEECS-----CCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred EEECC-----CCH---HHHHHHHHHHhcCCEEEEEec
Confidence 76332 122 357788899999999998754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.26 E-value=3.2 Score=34.94 Aligned_cols=96 Identities=17% Similarity=0.039 Sum_probs=59.7
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCCC---------Cc
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKSI---------HV 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~~---------p~ 124 (244)
+... .++..+||-+|+| .|..+..+++.. +. + ++++|. +.-++.+++..--.++.. +..+++ ..
T Consensus 186 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 186 NTAK-VEPGSTCAVFGLGAVGLAAVMGCHSA-GAKR-IIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCC
Confidence 3344 6778999999986 488888888875 45 6 888886 666666654321122211 100111 11
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+|+-.- ... ..++.+.+.|+|| |+++++-.
T Consensus 263 ~D~vid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 263 VDFSLECV-----GNV---GVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp BSEEEECS-----CCH---HHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECC-----CCH---HHHHHHHHHhhcCCcEEEEEcC
Confidence 37776332 112 4578889999999 99998754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=84.64 E-value=8.2 Score=27.65 Aligned_cols=87 Identities=13% Similarity=0.007 Sum_probs=51.5
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-h-HHHHhCCC--CCCeeEEeCCCCCC--C-----CcceEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-P-EVVAKAPS--IPEVTHIGGDMFKS--I-----HVVDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~-~~i~~a~~--~~~i~~~~gd~~~~--~-----p~~D~v~~~~~ 133 (244)
.+++=+|+ |..+..+++.. .+.+ ++++|. + ...+..+. ...+.++.||..++ + ..+|+|++..
T Consensus 4 ~~vlI~G~--G~vG~~la~~L~~~g~~-V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~- 79 (153)
T 1id1_A 4 DHFIVCGH--SILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS- 79 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS-
T ss_pred CcEEEECC--CHHHHHHHHHHHHCCCC-EEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec-
Confidence 57888876 55555555443 2456 888887 4 32222111 14688899998654 2 2358777552
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++.-..+....+.+.|..+++.
T Consensus 80 ----~~d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 80 ----DNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp ----SCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred ----CChHHHHHHHHHHHHHCCCCEEEE
Confidence 233334556667777878777765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=84.26 E-value=0.67 Score=38.01 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCeeEEeCCCCCC---CCc--ceEEEeccccccCCH------------------HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 109 PEVTHIGGDMFKS---IHV--VDAIFMKWVLTTWTD------------------DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 109 ~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~~~------------------~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.++.+++||.++. ++. .|+|++.--.....+ .....+++++.++|+|||.+++.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4677888888653 443 488887754432110 11245789999999999999875
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=84.20 E-value=4 Score=34.29 Aligned_cols=96 Identities=15% Similarity=-0.017 Sum_probs=59.4
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCCC--------C-c
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKSI--------H-V 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~~--------p-~ 124 (244)
+... .++..+||-+|+|. |..+..+++.. +. + ++++|. +.-.+.+++..--.++.. +..+++ + .
T Consensus 185 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 185 KVAK-VTQGSTCAVFGLGGVGLSVIMGCKAA-GAAR-IIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCe-EEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCC
Confidence 4444 67789999999864 88888888875 45 6 888886 666666654321122211 100111 1 1
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+|+-.- ... ..++.+.+.|+|| |+++++-.
T Consensus 262 ~D~vid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 262 VDFSFEVI-----GRL---DTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp BSEEEECS-----CCH---HHHHHHHHHBCTTTCEEEECSC
T ss_pred CcEEEECC-----CCH---HHHHHHHHHhhcCCcEEEEecc
Confidence 37776332 212 4578888999999 99998754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=83.52 E-value=2.4 Score=35.63 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=59.6
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC-----CCCCCC----C-cc
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG-----DMFKSI----H-VV 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g-----d~~~~~----p-~~ 125 (244)
+... .++..+||-+|+| .|..+..+++....-+ ++++|. +.-.+.+++..--.++.. |+.+.+ + ..
T Consensus 185 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 185 NTAK-VTPGSTCAVFGLGGVGFSAIVGCKAAGASR-IIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 3344 6778999999986 4888888888753226 888886 666666654321122211 111101 1 23
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
|+|+-.- ... ..++.+.+.|+|| |+++++-.
T Consensus 263 Dvvid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 263 DYAVECA-----GRI---ETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp SEEEECS-----CCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred CEEEECC-----CCH---HHHHHHHHHHhcCCCEEEEEcc
Confidence 8777332 112 4578889999999 99998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=83.22 E-value=0.95 Score=37.89 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=61.6
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCC----CCc--c
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKS----IHV--V 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~----~p~--~ 125 (244)
+... .+++.+||-+|+|. |.++..+++.. +. + ++++|. +.-++.+++..--.++. .|+.+. .+. .
T Consensus 160 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 160 ELAN-IKLGDTVCVIGIGPVGLMSVAGANHL-GAGR-IFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp HHTT-CCTTCCEEEECCSHHHHHHHHHHHTT-TCSS-EEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCE
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCcE-EEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCC
Confidence 4444 67789999999874 88888888765 45 6 999998 76666666532212221 111111 111 3
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+|+-.- ..+ ..++.+.+.|+|||+++++-..
T Consensus 237 D~v~d~~-----g~~---~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 237 DKVVIAG-----GDV---HTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp EEEEECS-----SCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred CEEEECC-----CCh---HHHHHHHHHHhcCCEEEEeccc
Confidence 8777432 111 3578888999999999987643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=83.16 E-value=4.4 Score=34.08 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=60.2
Q ss_pred hccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCCC---------C
Q 041308 57 LDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKSI---------H 123 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~~---------p 123 (244)
.+... .++..+||-+|+| .|..+..+++.. +. + ++++|. +.-.+.+++..--.++.. +..+++ .
T Consensus 188 ~~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~ 264 (376)
T 1e3i_A 188 INTAK-VTPGSTCAVFGLGCVGLSAIIGCKIA-GASR-IIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 264 (376)
T ss_dssp HTTSC-CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCe-EEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCC
Confidence 34444 6778999999986 488888888875 45 6 888886 666666654321122211 100111 1
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
..|+|+-. .... ..++.+.+.|+|| |+++++-.
T Consensus 265 g~Dvvid~-----~G~~---~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 265 GVDYSLDC-----AGTA---QTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp CBSEEEES-----SCCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred CccEEEEC-----CCCH---HHHHHHHHHhhcCCCEEEEECC
Confidence 13777633 2212 4578889999999 99998754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=3.5 Score=34.00 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=56.0
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC--CC--------Cc-ceEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK--SI--------HV-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~--~~--------p~-~D~v 128 (244)
.++..+||-.|| |.|..+..+++.. +.+ ++++|. +..++.+++...-... |..+ .+ .. .|++
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~-V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~d~v 218 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCK-VVGAAGSDEKIAYLKQIGFDAAF--NYKTVNSLEEALKKASPDGYDCY 218 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEE--ETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHhcCCcEEE--ecCCHHHHHHHHHHHhCCCCeEE
Confidence 677789999997 5777777777654 457 888887 6666655432211111 3222 11 11 3776
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-+.- . ..++.+.+.|+|||+++++-.
T Consensus 219 i~~~g-----~----~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 219 FDNVG-----G----EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EESSC-----H----HHHHHHHTTEEEEEEEEECCC
T ss_pred EECCC-----h----HHHHHHHHHHhcCCEEEEEec
Confidence 64322 2 237888899999999998754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=82.88 E-value=1.6 Score=36.76 Aligned_cols=95 Identities=13% Similarity=-0.051 Sum_probs=60.9
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC--------C--cc
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI--------H--VV 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~--------p--~~ 125 (244)
+... ++++.+||-+|+|. |..+..+++.. +.+ ++++|. +.-++.+++..--.++..+- +++ + ..
T Consensus 183 ~~~~-~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~v~~~~~g~g~ 258 (363)
T 3uog_A 183 EKGH-LRAGDRVVVQGTGGVALFGLQIAKAT-GAE-VIVTSSSREKLDRAFALGADHGINRLE-EDWVERVYALTGDRGA 258 (363)
T ss_dssp TTTC-CCTTCEEEEESSBHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHHTTCCE
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCE-EEEEecCchhHHHHHHcCCCEEEcCCc-ccHHHHHHHHhCCCCc
Confidence 4444 77889999999774 88888888765 567 999997 66666665532222222111 111 1 13
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+|+-.-- . ..++.+.+.|+|||+++++-..
T Consensus 259 D~vid~~g-----~----~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 259 DHILEIAG-----G----AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEEEEETT-----S----SCHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEECCC-----h----HHHHHHHHHhhcCCEEEEEecC
Confidence 87774322 1 2367788899999999998653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=3.2 Score=34.79 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=59.3
Q ss_pred CCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC---C----CCc-ceEEEec
Q 041308 63 FKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK---S----IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~---~----~p~-~D~v~~~ 131 (244)
.+++.+||-+| +|.|..+..+++.. +.+ +++++. ++-.+.+++..--.++..+-.+ . .+. .|+|+-+
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~-Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKA-KCH-VIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYES 238 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhC-CCE-EEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEEC
Confidence 67789999999 57899999998875 557 898987 6666665543211222211100 0 112 3877744
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
-. . ..++.+.++|+|+|+++++-..
T Consensus 239 ~g-----~----~~~~~~~~~l~~~G~iv~~g~~ 263 (362)
T 2c0c_A 239 VG-----G----AMFDLAVDALATKGRLIVIGFI 263 (362)
T ss_dssp SC-----T----HHHHHHHHHEEEEEEEEECCCG
T ss_pred CC-----H----HHHHHHHHHHhcCCEEEEEeCC
Confidence 22 1 3578888999999999987543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=82.48 E-value=6.2 Score=32.63 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=59.9
Q ss_pred cCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C--------Cc-c
Q 041308 59 GYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I--------HV-V 125 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~--------p~-~ 125 (244)
... + ++.+||-+|+| .|..+..+++.. +. + ++++|. +.-++.+++. --.++ |..++ + +. .
T Consensus 160 ~~~-~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~-Vi~~~~~~~~~~~~~~l-a~~v~--~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 160 GSG-V-SGKSVLITGAGPIGLMAAMVVRAS-GAGP-ILVSDPNPYRLAFARPY-ADRLV--NPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTC-C-TTSCEEEECCSHHHHHHHHHHHHT-TCCS-EEEECSCHHHHGGGTTT-CSEEE--CTTTSCHHHHHHHHHSSCE
T ss_pred hCC-C-CCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHh-HHhcc--CcCccCHHHHHHHhcCCCC
Confidence 444 5 77899999975 478888888775 45 7 999997 7777777764 22222 22221 1 11 3
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|+-..- . ...++.+.+.|+|||+++++-.
T Consensus 233 D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 233 EVLLEFSG-----N---EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EEEEECSC-----C---HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCC-----C---HHHHHHHHHHHhcCCEEEEEec
Confidence 77763322 1 1457888999999999998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=82.15 E-value=3.1 Score=34.35 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=59.8
Q ss_pred ccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-CCCCCeeEEeCCCCCC-C--------Cc
Q 041308 58 DGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKA-PSIPEVTHIGGDMFKS-I--------HV 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-~~~~~i~~~~gd~~~~-~--------p~ 124 (244)
+... .++..+||-+|+ |.|..+..+++.. +.+ ++++|. +.-.+.+ ++..--.++ |..+. + +.
T Consensus 143 ~~~~-~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 143 DVGQ-PKNGETVVISGAAGAVGSVAGQIARLK-GCR-VVGIAGGAEKCRFLVEELGFDGAI--DYKNEDLAAGLKRECPK 217 (336)
T ss_dssp HTTC-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCCSEEE--ETTTSCHHHHHHHHCTT
T ss_pred HhcC-CCCCCEEEEECCCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHcCCCEEE--ECCCHHHHHHHHHhcCC
Confidence 4444 677899999997 5788888888764 457 999997 7666666 443221222 22111 1 12
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+++-+- .. ..++.+.+.|+|||+++++-.
T Consensus 218 ~~d~vi~~~-----g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 218 GIDVFFDNV-----GG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp CEEEEEESS-----CH----HHHHHHHTTEEEEEEEEECCC
T ss_pred CceEEEECC-----Cc----chHHHHHHHHhhCCEEEEEee
Confidence 37766432 22 357888899999999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.03 E-value=0.59 Score=39.58 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=57.7
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCCC-CcceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKSI-HVVDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~~-p~~D~v~~~~~lh~ 136 (244)
.+++.+||-+|+|. |..+..+++.. +.+ ++++|. +.-++.+++..--.++.. |..+.+ ...|+|+-.-.-
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~-- 267 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAH-VVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA-- 267 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCC--
Confidence 67789999999874 88888888765 567 888886 666665554321122211 111111 224887743221
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..++.+.+.|+|||+++++-.
T Consensus 268 ---~---~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 268 ---P---HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp ---C---CCHHHHHTTEEEEEEEEECCC
T ss_pred ---H---HHHHHHHHHhccCCEEEEecc
Confidence 1 235677889999999998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=3.6 Score=34.58 Aligned_cols=96 Identities=17% Similarity=0.061 Sum_probs=59.1
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEe-CCCCCCC--------C-c
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIG-GDMFKSI--------H-V 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~~~~--------p-~ 124 (244)
+... .++..+||-+|+| .|.++..+++.. +. + ++++|. +.-.+.+++..--.++. .+..+++ + .
T Consensus 184 ~~~~-~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 184 NTAK-LEPGSVCAVFGLGGVGLAVIMGCKVA-GASR-IIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHH-TCSE-EEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCe-EEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCC
Confidence 4444 6778999999976 488888888875 44 6 888886 66666655431112221 1100111 1 1
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+|+-.. ... ..++.+.+.|+|+ |+++++-.
T Consensus 261 ~D~vid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 261 VDYSFECI-----GNV---KVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp BSEEEECS-----CCH---HHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECC-----CcH---HHHHHHHHhhccCCcEEEEEec
Confidence 38776332 112 4578889999999 99998754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=81.89 E-value=5.3 Score=32.99 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=59.1
Q ss_pred ccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-CCCCeeEEeCCCCC--CC--------C
Q 041308 58 DGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-SIPEVTHIGGDMFK--SI--------H 123 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-~~~~i~~~~gd~~~--~~--------p 123 (244)
+... .++..+||-.|+ |.|..+..+++.. +.+ ++++|. +.-++.++ +...-.++ |..+ .+ +
T Consensus 149 ~~~~-~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~-V~~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 149 EVCS-PKEGETVYVSAASGAVGQLVGQLAKMM-GCY-VVGSAGSKEKVDLLKTKFGFDDAF--NYKEESDLTAALKRCFP 223 (345)
T ss_dssp TTSC-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTSCCSEEE--ETTSCSCSHHHHHHHCT
T ss_pred HHhC-CCCCCEEEEECCCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHcCCceEE--ecCCHHHHHHHHHHHhC
Confidence 3344 677899999996 5788888888765 457 888887 66666655 33211222 2221 11 1
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+++-+. .. ..++.+.+.|+|||+++++-.
T Consensus 224 ~~~d~vi~~~-----g~----~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 224 NGIDIYFENV-----GG----KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp TCEEEEEESS-----CH----HHHHHHHTTEEEEEEEEECCC
T ss_pred CCCcEEEECC-----CH----HHHHHHHHHHhcCCEEEEEcc
Confidence 1 37776432 22 257888999999999998743
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=81.85 E-value=5.4 Score=32.62 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=50.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC----CCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF----ICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~ 139 (244)
++..|+-+|||.|.....|.+.+|+ ++ .+++|. +.. ...+..++|.++. .. ++
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ik-WvLiDPap~~-~~l~~~~NV~li~----------------~f---vd- 117 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIK-WMLIDGRHHD-PILNGLRDVTLVT----------------RF---VD- 117 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCE-EEEEESSCCC-GGGTTCTTEEEEE----------------CC---CC-
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeE-EEEEcCCcch-hhhcCCCcEEEEe----------------cc---CC-
Confidence 3579999999999999999988775 57 888896 321 1122224444433 22 22
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+. -+++.++.+.....++|.|.-...
T Consensus 118 e~---dl~~l~~~~~~~~iLLISDIRS~r 143 (307)
T 3mag_A 118 EE---YLRSIKKQLHPSKIILISDVRSKR 143 (307)
T ss_dssp HH---HHHHHHHHHTTSCEEEEECCCC--
T ss_pred HH---HHHHHHHhccCCCEEEEEEecCCC
Confidence 22 245566666778888888876553
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=81.75 E-value=1.5 Score=36.57 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=74.6
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CCcceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IHVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p~~D~v~~~~~lh~~~~ 139 (244)
..+++|+.||.|.+...+.+.. .+.+.++|. +..++..+.+ +... .+|+.+- ++..|+++...-+..++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 3689999999999999999875 442567888 7666655543 2222 5777543 344699998766655541
Q ss_pred --------HHHHHH---HHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 140 --------DECKLI---MENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 140 --------~~~~~~---l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
+..-.+ +-++.+.++| +++++|.+..-. . .....+.+.+.+.|++
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P--~~~~~ENV~gl~-------------~---------~~~~~~~~~i~~~l~~ 142 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP--KVVFMENVKNFA-------------S---------HDNGNTLEVVKNTMNE 142 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC--SEEEEEEEGGGG-------------T---------GGGGHHHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC--cEEEEeCcHHHH-------------h---------ccccHHHHHHHHHHHh
Confidence 111123 2334455677 466777653211 0 0011235677888889
Q ss_pred CCCCeEEE
Q 041308 209 TGFPHLRA 216 (244)
Q Consensus 209 aGf~~~~~ 216 (244)
.|+.+...
T Consensus 143 ~GY~v~~~ 150 (327)
T 2c7p_A 143 LDYSFHAK 150 (327)
T ss_dssp TTBCCEEE
T ss_pred CCCEEEEE
Confidence 99886553
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=80.97 E-value=7 Score=29.53 Aligned_cols=93 Identities=9% Similarity=0.098 Sum_probs=54.3
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC----CcceEEEeccccccCCHH
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI----HVVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~----p~~D~v~~~~~lh~~~~~ 140 (244)
+||=.| |+|.+...+++.. .+.+ +++++. +.-.+... ++++++.+|+.+.- ...|+|+.......-...
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHE-VTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAE 77 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCE-EEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTT
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCE-EEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccc
Confidence 455444 4566666655543 2356 888887 55444333 68899999997652 224888765443221222
Q ss_pred HHHHHHHHHHHHcCC--CCEEEEecc
Q 041308 141 ECKLIMENYYKALLA--GRKLIACEP 164 (244)
Q Consensus 141 ~~~~~l~~~~~~L~p--gG~lii~d~ 164 (244)
......+++.++++. .++++++-.
T Consensus 78 ~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEec
Confidence 234556667777765 467777654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.92 E-value=0.88 Score=37.85 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=38.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
++.+++.+. .++..|||.=||+|..+.+..+.. -+ ++++|+ +...+.+++
T Consensus 242 ~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~g--r~-~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 242 PEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERES--RK-WISFEMKPEYVAASAF 292 (323)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHG
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CC-EEEEeCCHHHHHHHHH
Confidence 445555442 456899999999999999988764 45 999999 888877765
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=80.51 E-value=3 Score=34.56 Aligned_cols=93 Identities=17% Similarity=0.087 Sum_probs=58.2
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCCC----Cc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKSI----HV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~~----p~--~D~v~~~ 131 (244)
.++..+||=+|+|. |.++..+++..-..+ ++++|. ++-++.+++..--.++. .|..+.+ .. .|.++..
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~-Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~ 239 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAK-VIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCE-EEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEEC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCE-EEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEe
Confidence 67788999999885 456666777666678 999998 76666666542222221 2221111 11 2555533
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.. . ...+....+.|+|||+++++-.
T Consensus 240 ~~-----~---~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 240 AV-----A---RIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp CS-----C---HHHHHHHHHTEEEEEEEEECCC
T ss_pred cc-----C---cchhheeheeecCCceEEEEec
Confidence 22 1 2457888899999999998753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=80.48 E-value=6.8 Score=32.65 Aligned_cols=97 Identities=12% Similarity=-0.030 Sum_probs=59.9
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeC-----CCCCC----C-C
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGG-----DMFKS----I-H 123 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~g-----d~~~~----~-p 123 (244)
+... .+++.+||=+|+|. |.++..+++...--+ ++++|. +.-.+.+++. .-+.+... |+.+. . +
T Consensus 173 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 173 QRAG-VRLGDPVLICGAGPIGLITMLCAKAAGACP-LVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp HHHT-CCTTCCEEEECCSHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC
Confidence 3444 67789999999874 888889998764334 788886 6666655542 12222211 11110 1 1
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+|+-.. ..+ ..++.+.+.|+|||+++++-.
T Consensus 251 ~g~Dvvid~~-----g~~---~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 251 IEPAVALECT-----GVE---SSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp CCCSEEEECS-----CCH---HHHHHHHHHSCTTCEEEECCC
T ss_pred CCCCEEEECC-----CCh---HHHHHHHHHhcCCCEEEEEcc
Confidence 1 38777432 222 457888899999999998754
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=80.32 E-value=12 Score=28.33 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=55.2
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C---CcceEEEecccccc--CC
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I---HVVDAIFMKWVLTT--WT 138 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~---p~~D~v~~~~~lh~--~~ 138 (244)
+||=.| |+|.+...+++.. .+.+ +++++. +.-.+... ..+++++.+|+.+. . ...|+|+....... -.
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 78 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGHE-VLAVVRDPQKAADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGR 78 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCCE-EEEEEeccccccccc-CCCceEEecccccccHhhcccCCEEEECCccCCCcch
Confidence 355454 5666666666543 2346 888887 54444332 26889999999765 2 22488876544321 11
Q ss_pred HHHHHHHHHHHHHHcCC-CCEEEEec
Q 041308 139 DDECKLIMENYYKALLA-GRKLIACE 163 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~p-gG~lii~d 163 (244)
........+++.++++. |++++++-
T Consensus 79 ~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 79 GYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp THHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred hhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 22345567778887775 57777764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 244 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 2e-51 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-44 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 1e-38 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-22 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-19 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 165 bits (419), Expect = 2e-51
Identities = 78/215 (36%), Positives = 123/215 (57%), Gaps = 3/215 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W EAV+D I+ F VHG Y + GK KMN + K+M V M +L+ Y
Sbjct: 17 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 76
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG +G L +I+ K+ I GINFDLP+V+ AP + + H+GGDMF
Sbjct: 77 TGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFA 135
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DA+ +K V W+D++C + N +KAL K+I E +LP++ N S+ ++ +
Sbjct: 136 SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 195
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215
D + G+ +TE+++++L +GF +
Sbjct: 196 TLDNLMFITV--GGRERTEKQYEKLSKLSGFSKFQ 228
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 147 bits (372), Expect = 2e-44
Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
++ + + + + + F G + + K P+ N AM+ ++ D
Sbjct: 16 SGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCD 75
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
F G++ +VDVGG G +II + + I FD P+VV +T++GGDMF
Sbjct: 76 FVFDGLESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFT 134
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGR---KLIACEPVLPDDSNESQRTR 177
SI DA+ +K++L WTD +C I++ +A+ K+ + V+ +E+Q T+
Sbjct: 135 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQ 194
Query: 178 ALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP-----HLRAFISII 221
L D+ + + GK + E+E+K+L GF L F+S+I
Sbjct: 195 IKLLMDVNMACL---NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLI 240
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 132 bits (333), Expect = 1e-38
Identities = 90/238 (37%), Positives = 132/238 (55%), Gaps = 14/238 (5%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + K MS M +L+ Y
Sbjct: 18 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 76
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+K LVDVGG G + I+ K+ I +GINFDLP V+ APS P V H+GGDMF
Sbjct: 77 TGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIEDAPSYPGVEHVGGDMFV 135
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
SI DA+FMKW+ W+D+ C ++N Y+AL K+I E +LP + S T+ ++
Sbjct: 136 SIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVV 195
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFSFWILE 238
D +M + GK +T++EF+ L GF + + F+ +I+E
Sbjct: 196 HID-VIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH-----------CNAFNTYIME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 90.0 bits (222), Expect = 2e-22
Identities = 50/244 (20%), Positives = 84/244 (34%), Gaps = 21/244 (8%)
Query: 3 AWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDG 62
A+ + + V +A +G P + + MS + D YD
Sbjct: 21 AFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD- 78
Query: 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKA--------PSIPEVTHI 114
+ V+ ++DVGG G L I + G +L +A +
Sbjct: 79 WSAVRHVLDVGGGNGGMLAAIALR-APHLRGTLVELAGPAERARRRFADAGLADRVTVAE 137
Query: 115 GGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQ 174
G D + + +VL W+D++ I+ +AL G +L+ + + +
Sbjct: 138 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR 197
Query: 175 RTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFSF 234
LL D+ ++T G+ +T E L S G S TL F F
Sbjct: 198 FFSTLL--DLRMLTFMG--GRVRTRDEVVDLAGSAGLALASERTSGSTTLP------FDF 247
Query: 235 WILE 238
ILE
Sbjct: 248 SILE 251
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 82.4 bits (202), Expect = 2e-19
Identities = 36/217 (16%), Positives = 83/217 (38%), Gaps = 16/217 (7%)
Query: 3 AWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDG 62
++ + +A+ + ++G+P Y +P + ++ + YD
Sbjct: 20 SFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD- 77
Query: 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMF--- 119
+ V+ ++DVGG G I ++ + ++ V A S + + +
Sbjct: 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVE 136
Query: 120 -----KSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQ 174
DAI + +VL W D + I+ +AL G +++ E +++ ++
Sbjct: 137 GDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE 196
Query: 175 RTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
+ L D+ ++ G +T +++ L S G
Sbjct: 197 QFTEL---DLRMLVFLG--GALRTREKWDGLAASAGL 228
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 244 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.91 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.89 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.88 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.87 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.87 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.86 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.85 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.83 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.81 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.8 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.8 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.78 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.78 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.76 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.76 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.75 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.75 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.73 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.67 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.67 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.65 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.64 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.64 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.63 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.62 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.6 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.57 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.56 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.56 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.55 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.52 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.51 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.51 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.49 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.47 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.47 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.46 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.46 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.45 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.43 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.38 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.36 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.27 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.26 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.2 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.19 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.17 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.16 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.13 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.09 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.07 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.01 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.84 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.82 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.77 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.74 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.69 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.66 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.63 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.63 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.63 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.56 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.54 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.53 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.5 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.48 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.46 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.45 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.41 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.41 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.4 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.4 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.38 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.37 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.35 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.32 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.3 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.27 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.21 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.16 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.12 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.1 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.96 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.95 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.81 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.68 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.52 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.48 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.42 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.23 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.09 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.0 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.92 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.85 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.64 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.47 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.43 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.32 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.09 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.84 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.83 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.51 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.23 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.11 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.98 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.9 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.85 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.38 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.14 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.56 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.47 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.85 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.77 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.63 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.55 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 91.5 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.4 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.04 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.82 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 88.72 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 88.28 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.76 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.51 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.36 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.74 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 83.61 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 83.14 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.27 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 82.16 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.07 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.93 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 80.84 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 80.56 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=9.5e-45 Score=295.27 Aligned_cols=226 Identities=35% Similarity=0.611 Sum_probs=190.5
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|++++++|.+++|+..+|.++||++.++|+..+.|+++|.+.+....+.+++.++.+++..+|||||||+|.++.
T Consensus 18 ~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~ 97 (244)
T d1fp1d2 18 QVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLE 97 (244)
T ss_dssp HHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHH
T ss_pred HHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHH
Confidence 46999999999988788999999999999999999999999999999988889999999867899999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+++++|+++ ++++|+|.+++.+...+|++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+++|
T Consensus 98 ~l~~~~P~l~-~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI 176 (244)
T d1fp1d2 98 LIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVII 176 (244)
T ss_dssp HHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHCCCCe-EEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999999999 999999999998888899999999999999989999999999999999999999999999999999999
Q ss_pred ecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc-ceeEEEeecC
Q 041308 162 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI-IFTLFLSSKS 230 (244)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~~~~~~ 230 (244)
+|.+.++.+..+........+|+.|+. ..+|++||.+||++++++|||+.+++.... .+.+++=++|
T Consensus 177 ~e~v~~~~~~~~~~~~~~~~~d~~m~~--~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 177 VEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp EEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred EEEEecCCCCCchHHHHHHHHHHHHHh--hCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence 999988776544444455677888886 678999999999999999999999986543 4555554443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.3e-43 Score=289.11 Aligned_cols=222 Identities=39% Similarity=0.700 Sum_probs=199.8
Q ss_pred CCChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHH
Q 041308 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 1 ~~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 80 (244)
|+.|.+|+++||+|+ ++|+..+|.++|+++.++|+..+.|+++|...+......+++.++.+++..+|||||||+|.++
T Consensus 18 ~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~ 96 (243)
T d1kyza2 18 MESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVI 96 (243)
T ss_dssp HGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHH
T ss_pred HHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHH
Confidence 468999999999999 9999999999999999999999999999999888888889999983466789999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
..+++++|+++ ++++|+|.+++.++..+|++++.+|+++++|.+|++++.+++|+|+++++.++|++++++|+|||+++
T Consensus 97 ~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~l 175 (243)
T d1kyza2 97 NTIVSKYPTIK-GINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVI 175 (243)
T ss_dssp HHHHHHCTTSE-EEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEE
T ss_pred HHHHHHCCCCe-EEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEE
Confidence 99999999999 99999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEE
Q 041308 161 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLF 225 (244)
Q Consensus 161 i~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~ 225 (244)
|+|.+.++....+........+|+.|+. ...+|++||.+||++|+++|||+.+++........+
T Consensus 176 i~d~~~~~~~~~~~~~~~~~~~d~~ml~-~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~v 239 (243)
T d1kyza2 176 VAECILPVAPDSSLATKGVVHIDVIMLA-HNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYI 239 (243)
T ss_dssp EEECEECSSCCCCHHHHHHHHHHHHHHH-HCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEE
T ss_pred EEEEEecCCCCCchhhHHHHHHHHHHHh-hCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEE
Confidence 9999987665444333344577888887 456899999999999999999999999877655543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.8e-41 Score=275.89 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=197.2
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhcc-CCCCCCcceEEEEcCCccHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDG-YDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~~~~vLDvG~G~G~~~ 80 (244)
..|..|++++|+|.+++|+..+|.++|+++.++|+..+.|+++|...+......+.+. ++ +++..+|||||||+|.++
T Consensus 17 ~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~ 95 (244)
T d1fp2a2 17 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FDGLESIVDVGGGTGTTA 95 (244)
T ss_dssp HGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HTTCSEEEEETCTTSHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-ccCceEEEEecCCccHHH
Confidence 4699999999999768999999999999999999999999999998887666666554 24 788899999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCC---C
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAG---R 157 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg---G 157 (244)
..+++++|+++ ++++|+|.+++.+...+|++++.+|+++++|.+|+|+++++||+|+++++.++|++++++|+|| |
T Consensus 96 ~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~ 174 (244)
T d1fp2a2 96 KIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRG 174 (244)
T ss_dssp HHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCC
T ss_pred HHHHHhCCCCe-EEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCc
Confidence 99999999999 9999999999999888999999999999988889999999999999999999999999999998 8
Q ss_pred EEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 158 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 158 ~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
+++|+|.+.++....+........+|+.|+. .+|++||.+||++|+++|||+.+++.+..+...++-++
T Consensus 175 ~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~---~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~svIE~~ 243 (244)
T d1fp2a2 175 KVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 243 (244)
T ss_dssp EEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeecCCCCCCchHHHHHHHHHHHHHh---CCCcCCCHHHHHHHHHHcCCceEEEEECCCCeEEEEEe
Confidence 9999999988775544433344566777764 57999999999999999999999999988877766544
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=1.6e-41 Score=278.76 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=188.7
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|++++|+|. ++++..+|.++|+++..+++..+.|+++|...+...++.+++.++ |++..+|||||||+|.++.
T Consensus 20 ~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~vlDvG~G~G~~~~ 97 (256)
T d1qzza2 20 LAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLA 97 (256)
T ss_dssp GGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHH
T ss_pred hhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-CccCCEEEEECCCCCHHHH
Confidence 37999999999999 999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCC-------CCCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPS-------IPEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~-------~~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++++|+++ ++++|+|.+++.+++ .+++.++.+|+++++|. +|+|++.++||+|+++++.++|++++++|
T Consensus 98 ~l~~~~P~~~-~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~L 176 (256)
T d1qzza2 98 AIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRAL 176 (256)
T ss_dssp HHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHE
T ss_pred HHHHhhcCcE-EEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCcHHHHHHHHHHHhhc
Confidence 9999999999 999999888887764 27899999999998876 59999999999999999999999999999
Q ss_pred CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 154 LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 154 ~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
||||+++|+|...++..... ......+|+.|+. ..+|+.||.++|++++++|||++++++....
T Consensus 177 kpgG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~--~~~g~~rt~~e~~~ll~~AGf~~~~~~~~~~ 240 (256)
T d1qzza2 177 EPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLT--FMGGRVRTRDEVVDLAGSAGLALASERTSGS 240 (256)
T ss_dssp EEEEEEEEEECCH---------HHHHHHHHHHHHH--HHSCCCCCHHHHHHHHHTTTEEEEEEEEECC
T ss_pred CCcceeEEEEeccCCCCccc--HHHHHHHHHHHHh--hCCCccCCHHHHHHHHHHCCCceeEEEEeCC
Confidence 99999999998765543221 1234567888887 6689999999999999999999999987643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=2.9e-41 Score=276.92 Aligned_cols=212 Identities=19% Similarity=0.317 Sum_probs=189.4
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|+++||+|+ +++...+|.++|+++..+++..+.|+++|.......++.+++.++ |++..+|||||||+|.++.
T Consensus 19 ~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~ 96 (253)
T d1tw3a2 19 ISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAA 96 (253)
T ss_dssp GGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred ccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHH
Confidence 47999999999999 899999999999999999999999999999999989999999999 9999999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++++|+++ ++++|+|.+++.+++. ++++++.+|++++.|. +|+|++.++|||++++++.++|++++++|
T Consensus 97 ~la~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L 175 (253)
T d1tw3a2 97 AIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEAL 175 (253)
T ss_dssp HHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTE
T ss_pred HHHHhcceeE-EEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhc
Confidence 9999999999 9999998888887752 7899999999988665 59999999999999999999999999999
Q ss_pred CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 154 LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 154 ~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
||||+++|.|...++...... ....+|+.|+. ..+|+.+|.++|++++++|||++++++.++.
T Consensus 176 kPGG~l~i~e~~~~~~~~~~~---~~~~~dl~~~~--~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~ 238 (253)
T d1tw3a2 176 EPGGRILIHERDDLHENSFNE---QFTELDLRMLV--FLGGALRTREKWDGLAASAGLVVEEVRQLPS 238 (253)
T ss_dssp EEEEEEEEEECCBCGGGCCSH---HHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCcEEEEEeccCCCCCcchh---HHHHhhHHHHh--hCCCcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 999999999986655432221 23456777776 6789999999999999999999999987654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.91 E-value=6.1e-24 Score=170.09 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=118.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH--cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCcceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK--HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHVVDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~ 131 (244)
.++..+|||+|||||..+..+++. .|+.+ ++++|+ +.|++.|+++ .++++..+|+.+. .+.+|++++.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCc-eEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence 356789999999999999999986 47888 999999 9999999852 5788888888654 4446999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhcc------------CceecCH
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA------------KGKHKTE 199 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------------~~~~~t~ 199 (244)
.++||+++++..++|++++++|||||.+++.|...+..+..... .............+.. .-...+.
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 194 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTDSI 194 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCH
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCH
Confidence 99999998888899999999999999999999877655211100 0000001100000000 0133588
Q ss_pred HHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 200 QEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
+++.++|++|||+.+++..-..+..-.+|.
T Consensus 195 ~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~ 224 (225)
T d1im8a_ 195 ETHKVRLKNVGFSQVELWFQCFNFGSMIAV 224 (225)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHcCCCceEEeeeeCceEEEEEE
Confidence 999999999999988875433334334443
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.89 E-value=1.4e-23 Score=168.23 Aligned_cols=155 Identities=12% Similarity=0.148 Sum_probs=118.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------CCCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------IPEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~~~i~~~~gd~~~~-~p~- 124 (244)
.++++..+ +++..+|||||||+|.++..+++..+ + ++++|+ +.|++.|++ .++++++.+|+.+. ++.
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--E-EEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 45677776 88999999999999999999998764 5 999999 999998864 27899999999764 554
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++..++||+++.+ ++|++++++|||||++++.+...+.. +.... ..+.............++.++|.
T Consensus 81 ~fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 152 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEN---DAFDV---FYNYVEKERDYSHHRAWKKSDWL 152 (231)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSS---HHHHH---HHHHHHHHHCTTCCCCCBHHHHH
T ss_pred ccccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCC---HHHHH---HHHHHHhhcccCcccCCCHHHHH
Confidence 49999999999998864 88999999999999999998866544 21111 11111111012234567889999
Q ss_pred HHHHhCCCCeEEEEEcc
Q 041308 204 QLGFSTGFPHLRAFISI 220 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~ 220 (244)
++++++||+++++....
T Consensus 153 ~~l~~aGf~~~~~~~~~ 169 (231)
T d1vl5a_ 153 KMLEEAGFELEELHCFH 169 (231)
T ss_dssp HHHHHHTCEEEEEEEEE
T ss_pred HHHHHCCCEEEEEEEee
Confidence 99999999988876553
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.88 E-value=5.8e-23 Score=169.76 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=126.8
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCe
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEV 111 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i 111 (244)
.+.++.......+++.+.+..+ +++..+|||||||+|.++..+++++ +.+ ++++|+ +.+++.|++. +++
T Consensus 43 ~~~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~i~~a~~~~~~~gl~~~v 119 (282)
T d2o57a1 43 EIREASLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNI 119 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTE
T ss_pred CHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcE-EEEEeccchhhhhhhcccccccccccc
Confidence 3444444444455666777766 8889999999999999999999875 567 999999 9999888863 689
Q ss_pred eEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh
Q 041308 112 THIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT 188 (244)
Q Consensus 112 ~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~ 188 (244)
+++.+|+.+. ++. .|+|++..++||+++. .++|++++++|||||++++.++...+....... ..+.+..
T Consensus 120 ~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~--- 191 (282)
T d2o57a1 120 TVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILDRI--- 191 (282)
T ss_dssp EEEECCTTSCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHHHH---
T ss_pred cccccccccccccccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHH---HHHHHHh---
Confidence 9999999774 554 4999999999999876 478999999999999999999877654321111 1111111
Q ss_pred hhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 189 IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 189 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
......+.+++.++++++||+.+.+.+..
T Consensus 192 ---~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~ 220 (282)
T d2o57a1 192 ---KLHDMGSLGLYRSLAKECGLVTLRTFSRP 220 (282)
T ss_dssp ---TCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred ---ccCCCCCHHHHHHHHHHcCCceEEEEECc
Confidence 11234578899999999999988887653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=1.4e-22 Score=162.88 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=119.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~-- 124 (244)
-+++..+ ++++.+|||||||+|.++..++++++ + ++++|+ +.|++.|+++ +++.++++|+.+. ++.
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~-v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--e-EEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 3667777 99999999999999999999998764 5 999999 9999988753 6899999999764 555
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh-hhhhhccCceecCHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF-VMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++..++||+++. .++|++++++|||||++++.+...+.. +.... +++.. ... .....+..+..+|.
T Consensus 83 fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~---~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~ 153 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED---PVLDE---FVNHLNRLR-DPSHVRESSLSEWQ 153 (234)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS---HHHHH---HHHHHHHHH-CTTCCCCCBHHHHH
T ss_pred cceeeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCC---HHHHH---HHHHHHhhC-CCcccccCCHHHHH
Confidence 3999999999999875 589999999999999999998766544 22211 11111 111 12235566889999
Q ss_pred HHHHhCCCCeEEEEEcc
Q 041308 204 QLGFSTGFPHLRAFISI 220 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~ 220 (244)
.+++++||.+.++....
T Consensus 154 ~~~~~~gf~~~~~~~~~ 170 (234)
T d1xxla_ 154 AMFSANQLAYQDIQKWN 170 (234)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHCCCceeEEEEee
Confidence 99999999887776543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.87 E-value=2.2e-22 Score=163.86 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=118.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV--V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~--~ 125 (244)
..+++.++ ..+..+|||+|||+|.++..++..+++ + ++++|. +.|++.|++. .++++.++|+.+. ++. .
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-T-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-E-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-e-EEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence 44667776 667789999999999999999987754 6 899999 9999998753 5689999998664 443 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++.+++||+++++..++|++++++|+|||+++|.|.+...... ..+. ..+...++.++|+++
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~------~d~~~~rs~~~~~~l 224 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK------EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET------TTTEEEBCHHHHHHH
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc------cCCceeCCHHHHHHH
Confidence 9999999999999999899999999999999999999876554311 1111 234556899999999
Q ss_pred HHhCCCCeEEEEE
Q 041308 206 GFSTGFPHLRAFI 218 (244)
Q Consensus 206 l~~aGf~~~~~~~ 218 (244)
|+++||++++...
T Consensus 225 ~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 225 FNESGVRVVKEAF 237 (254)
T ss_dssp HHHHTCCEEEEEE
T ss_pred HHHcCCEEEEEEe
Confidence 9999999988765
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.7e-22 Score=159.29 Aligned_cols=139 Identities=13% Similarity=0.115 Sum_probs=113.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
.++..+|||||||+|.++..+++..+. + ++++|+ +.|++.|+++ .+++|+++|+.+. ++. .|+|++..
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~-v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-E-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-E-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-E-EEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 556789999999999999998877653 6 999999 9999988753 5689999999764 333 49999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
++||+++++..+++++++++|||||.+++.+....+.. .++ .......++.++|+++|+++||+
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~----------~~~------~~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV----------ILD------DVDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE----------EEE------TTTTEEEEBHHHHHHHHHHTTCC
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc----------ccc------cCCceeeCCHHHHHHHHHHcCCE
Confidence 99999999888999999999999999999987655431 111 02334567899999999999999
Q ss_pred eEEEEEc
Q 041308 213 HLRAFIS 219 (244)
Q Consensus 213 ~~~~~~~ 219 (244)
+++.+..
T Consensus 200 ii~~~~q 206 (222)
T d2ex4a1 200 LLAEERQ 206 (222)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9988764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.2e-21 Score=158.48 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=119.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+.+.+. ++++.+|||||||+|..+..++++++ .+ ++++|+ +.|++.+++. ++++|+.+|+.+..+.
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~-v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~ 98 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-IT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 98 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CE-EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence 445777777 88899999999999999999988764 78 999999 9999888753 6799999999876554
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++..++||+++. .+++++++++|||||++++.+......+...... .... . .......+..++
T Consensus 99 ~~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~---~~~~----~--~~~~~~~~~~~~ 167 (245)
T d1nkva_ 99 EKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIA---QACG----V--SSTSDFLTLPGL 167 (245)
T ss_dssp SCEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHH---HTTT----C--SCGGGSCCHHHH
T ss_pred CceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHHHH---HHhc----c--CCCcccCCHHHH
Confidence 4999999999999876 4899999999999999999987655543211111 1110 0 122345688999
Q ss_pred HHHHHhCCCCeEEEEEc
Q 041308 203 KQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~ 219 (244)
.++++++||+++.....
T Consensus 168 ~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 168 VGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHcCCEEEEEEeC
Confidence 99999999998876544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=7.7e-21 Score=149.79 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=103.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCH
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTD 139 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~ 139 (244)
.+..+|||||||+|.++..+. + ++++|+ +.|++.+++ .++.++.+|+.+. ++. .|+|++.++|||+++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~-~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d 106 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------I-KIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDD 106 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------C-CEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred CCCCeEEEECCCCcccccccc------e-EEEEeCChhhcccccc-cccccccccccccccccccccccccccccccccc
Confidence 345689999999999888763 4 788999 999999886 4789999999764 544 499999999999987
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
. .++|++++++|+|||++++.+...... ............. ...+...+|.+++.++|+++||+++++..
T Consensus 107 ~--~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 107 P--ERALKEAYRILKKGGYLIVGIVDRESF----LGREYEKNKEKSV---FYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp H--HHHHHHHHHHEEEEEEEEEEEECSSSH----HHHHHHHTTTC-C---CSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred c--ccchhhhhhcCCCCceEEEEecCCcch----hHHhhhhcccccc---ccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 5 488999999999999999988643221 1111001111000 12334567999999999999999888765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=4.5e-20 Score=151.87 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=125.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.+. ++++.+|||||||.|.++..+++.++ .+ ++++|+ +.+++.+++. .++.+...|+.+.-..
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~-v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~ 117 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 117 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-ee-EEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccc
Confidence 456888998 99999999999999999999988764 68 999999 8888877642 5677877776443333
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCC-----chHHhhhhhcccHhhhhhhccCceecCH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN-----ESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
.|.|++..+++|+.++....+|++++++|||||++++.+.+..+... ...........+..... ..+++...+.
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~ky-ifPgg~lPS~ 196 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLPST 196 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCCCH
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhh-ccCCCcccch
Confidence 59999999999999887789999999999999999998765443210 00000011112222221 2577888899
Q ss_pred HHHHHHHHhCCCCeEEEEEccce
Q 041308 200 QEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
+++.+.++++||.+.++.++..+
T Consensus 197 ~~l~~~~e~aGf~v~~~~~~~~h 219 (280)
T d2fk8a1 197 EMMVEHGEKAGFTVPEPLSLRPH 219 (280)
T ss_dssp HHHHHHHHHTTCBCCCCEECHHH
T ss_pred HhhhhhHHhhccccceeeecccC
Confidence 99999999999999999886543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=3.5e-19 Score=146.58 Aligned_cols=165 Identities=11% Similarity=0.011 Sum_probs=125.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.+. ++++.+|||||||.|.+++.+++.+ +++ ++++++ +..++.+++. +++++..+|+.+.-..
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~-v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 127 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 127 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-Ccc-eEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence 456888898 9999999999999999999999988 478 999999 8777776542 7899999998543223
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC-----CchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS-----NESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
.|.|++..++.|+..+....++++++++|||||++++.+.+...+. ..+.........+..... ..++|...+.
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~ky-iFpgg~lPsl 206 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPSI 206 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCCH
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHH-hccCCCCCCh
Confidence 5999999999999877667899999999999999999887643220 000000111111211111 2567888899
Q ss_pred HHHHHHHHhCCCCeEEEEEccc
Q 041308 200 QEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.++..+++++||++.++.++..
T Consensus 207 ~~~~~~~e~agf~v~~~~~~~~ 228 (285)
T d1kpga_ 207 PMVQECASANGFTVTRVQSLQP 228 (285)
T ss_dssp HHHHHHHHTTTCEEEEEEECHH
T ss_pred hhHHHHHHHhchhhcccccchh
Confidence 9999999999999999988753
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.80 E-value=8e-20 Score=150.66 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=111.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-c
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~ 125 (244)
.+++....++.+.+|||||||+|.++..+++..|. .+ ++++|+ +.+++.|+++ .+++|+.+|+.+. ++. .
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~f 95 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 95 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCE-EEEEecchhHhhhhhcccccccccccccccccccccccCCc
Confidence 34443322566789999999999999999998875 56 999999 9999988753 4789999999775 444 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC--------CCCCchHHhhhhhcccHhhhhhhccCceec
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP--------DDSNESQRTRALLEGDIFVMTIYRAKGKHK 197 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 197 (244)
|+|++.+++||+++++ .+|++++++|||||++++.|.... +............+...........+....
T Consensus 96 D~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T d2gh1a1 96 DIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173 (281)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTT
T ss_pred eEEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999864 789999999999999999885321 010001000000111111111001112222
Q ss_pred CHHHHHHHHHhCCCCeEEEEEcc
Q 041308 198 TEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 198 t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...++..+++++||+.+++....
T Consensus 174 i~~~l~~~l~eaGf~~i~~~~~~ 196 (281)
T d2gh1a1 174 IGMKIPIYLSELGVKNIECRVSD 196 (281)
T ss_dssp GGGTHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHHcCCeEEEEEEec
Confidence 23567899999999999886543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=1.1e-18 Score=143.93 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=125.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.+. ++++.+|||||||.|.+++.++++++ ++ ++++++ +..++.+++. .++.+...|+...-..
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~-v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 126 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 126 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cc-eeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence 456888888 99999999999999999999998885 68 999999 8777766642 6788888887433233
Q ss_pred ceEEEeccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHH-----hhhhhcccHhhhhhhcc
Q 041308 125 VDAIFMKWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQR-----TRALLEGDIFVMTIYRA 192 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~ 192 (244)
.|.|++.-++.|+.+ +.-..+++++.++|||||++++...+.++....... .......+..... ..+
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky-iFp 205 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE-IFP 205 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH-TCT
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH-hcC
Confidence 699999999999886 345689999999999999999998876654110000 0001111221111 257
Q ss_pred CceecCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 193 KGKHKTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 193 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
++...+..++...++++||++..++.+..+
T Consensus 206 gg~lps~~~~~~~~e~~gl~v~~~~~~~~h 235 (291)
T d1kpia_ 206 GGRLPRISQVDYYSSNAGWKVERYHRIGAN 235 (291)
T ss_dssp TCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred CCCCCCHHHHHhhhcccccccceeeecccc
Confidence 788889999999999999999999887654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=7.9e-19 Score=137.26 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=88.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-c-ce
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-V-VD 126 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-~-~D 126 (244)
+++... +..+.+|||||||+|..+..++++.+ + ++++|+ +.+++.+++. +++.+..+|+.+..+ . .|
T Consensus 22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 97 (198)
T d2i6ga1 22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANGY--D-VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD 97 (198)
T ss_dssp HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHhh--h-hccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence 444343 34457999999999999999998864 5 999999 8999877642 678999999977533 3 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+|++..++||+++++..+++++++++|+|||++++....
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999999988899999999999999999997664
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.76 E-value=1.2e-18 Score=139.17 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=111.4
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCCC--Cc--ceEE
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKSI--HV--VDAI 128 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~~--p~--~D~v 128 (244)
+.++ ++++.+|||+|||+|.++.++++..|+.+ ++++|+ |.|++.++. .+++..+.+|...+. .. .|++
T Consensus 68 ~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~-V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 68 KVMP-IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred HhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeE
Confidence 3444 88999999999999999999999999888 999999 988876653 478888999987762 22 3777
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
++.+.+|+..+. ..+++++++.|||||++++.+.....+...++ ....+++.+.|++
T Consensus 146 ~i~~~~~~~~~~--~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~---------------------~~~~~e~~~~L~~ 202 (230)
T d1g8sa_ 146 VIYEDVAQPNQA--EILIKNAKWFLKKGGYGMIAIKARSIDVTKDP---------------------KEIFKEQKEILEA 202 (230)
T ss_dssp EEEECCCSTTHH--HHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH---------------------HHHHHHHHHHHHH
T ss_pred EeeccccchHHH--HHHHHHHHHhcccCceEEEEeeccccCCCCCH---------------------HHHHHHHHHHHHH
Confidence 777778776554 57899999999999999998765433321111 1124677899999
Q ss_pred CCCCeEEEEEccc---eeEEEeec
Q 041308 209 TGFPHLRAFISII---FTLFLSSK 229 (244)
Q Consensus 209 aGf~~~~~~~~~~---~~~~~~~~ 229 (244)
+||++++..++.. ++.++++.
T Consensus 203 aGF~ive~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 203 GGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HTEEEEEEEECTTTSTTEEEEEEE
T ss_pred cCCEEEEEecCCCCcCCeEEEEEE
Confidence 9999999887643 35555543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.76 E-value=4e-19 Score=141.71 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=104.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-CCc-ceEEEeccccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~ 138 (244)
..+.+|||||||+|.++..+++.+. + ++++|+ +.+++.|++. .++.++.+|+.+. .+. .|+|++..++||++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~--~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC--e-EEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 3467999999999999999987753 5 999999 9999999753 6799999998665 333 49999999999998
Q ss_pred HHHHHHHHHHHH-HHcCCCCEEEEecccCCCCCCchHHhhhhhc-------ccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 139 DDECKLIMENYY-KALLAGRKLIACEPVLPDDSNESQRTRALLE-------GDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 139 ~~~~~~~l~~~~-~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
++ ..+|++++ ++|+|||++++.-+.... .+. ..... .............+.++.++++++++++|
T Consensus 96 d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G 168 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAEGGRLFLVCPNANA----VSR-QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 168 (225)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTC----HHH-HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred CH--HHHHHHHHHHhcCCCceEEEEeCCccc----HHH-HHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC
Confidence 86 47899998 789999999996432111 100 00000 00000000112345678999999999999
Q ss_pred CCeEEEEE
Q 041308 211 FPHLRAFI 218 (244)
Q Consensus 211 f~~~~~~~ 218 (244)
|++++...
T Consensus 169 f~i~~~~~ 176 (225)
T d2p7ia1 169 LQVTYRSG 176 (225)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 99888654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=1.3e-18 Score=138.01 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=88.0
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--ce
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~--~D 126 (244)
++..+ +++..+|||||||+|.++..+++. +.+ ++++|+ +.|++.|++. .++.++.+|+.+. ++. .|
T Consensus 30 ~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~-v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD 104 (226)
T d1ve3a1 30 LLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFD 104 (226)
T ss_dssp HHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEE
T ss_pred HHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcc-cccccccccchhhhhhhhccccccccccccccccccccCcCce
Confidence 44443 356689999999999999999975 456 999999 9999998753 5788899998774 444 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+|++..++||+++.+..++|+++.++|||||++++....
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999999999888889999999999999999987653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.75 E-value=1.5e-18 Score=140.10 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=79.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ceEEEec-cccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VDAIFMK-WVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D~v~~~-~~lh 135 (244)
+..+|||+|||+|.++..+++.+. + ++++|+ +.|++.|+++ .+++++++|+.+. ++. .|+|++. ++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~--~-v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK--N-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--E-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC--c-cEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 347999999999999999998864 5 999999 9999998753 5799999999765 444 4998865 6777
Q ss_pred cC-CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 136 TW-TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 136 ~~-~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
|+ +.++..++|+++++.|||||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 76 466778899999999999999986
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.73 E-value=8.5e-18 Score=130.41 Aligned_cols=108 Identities=8% Similarity=0.016 Sum_probs=90.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------CCeeEEeC
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------------------PEVTHIGG 116 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------~~i~~~~g 116 (244)
....+. .+++.+|||+|||+|..+..|++++ .+ ++++|+ +.|++.|++. ..+++..+
T Consensus 12 ~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~G--~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 12 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQG--YH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHHC--CE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHcC-CCCCCEEEEecCcCCHHHHHHHHcC--Cc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 344454 7788999999999999999999874 56 999999 9999998752 34678889
Q ss_pred CCCCCCCc----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 117 DMFKSIHV----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 117 d~~~~~p~----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+++..+. .|+|++..++||+++++....+++++++|||||++++......
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 98776332 3999999999999999889999999999999999988765443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=4.6e-18 Score=137.18 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=89.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~ 124 (244)
....++..+. .++..+|||||||||.++..+++.. .+ ++++|+ +.|++.|+++ .++++..+|+.+. ++.
T Consensus 29 ~~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~-v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~ 104 (251)
T d1wzna1 29 FVEEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN 104 (251)
T ss_dssp HHHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS
T ss_pred HHHHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eE-EEEEeeccccccccccccccccccchheehhhhhccccc
Confidence 3455666666 6777899999999999999999875 46 999999 9999999864 5799999999764 444
Q ss_pred -ceEEEec-cccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 -VDAIFMK-WVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 -~D~v~~~-~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++. .+++|++.++..++|++++++|||||++++.
T Consensus 105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4998876 6888888888899999999999999999874
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.67 E-value=6e-17 Score=131.07 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=84.1
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-C-Cc-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-I-HV- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~-p~- 124 (244)
|++.+ .++..+|||+|||+|..+..+++... .+ ++++|+ +.|++.|+++ .++.+..+|+... + +.
T Consensus 17 lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~-~~-v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~ 92 (252)
T d1ri5a_ 17 LIRLY--TKRGDSVLDLGCGKGGDLLKYERAGI-GE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 92 (252)
T ss_dssp HHHHH--CCTTCEEEEETCTTTTTHHHHHHHTC-SE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred HHHHh--CCCcCEEEEecccCcHHHHHHHHcCC-Ce-EEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence 55555 36678999999999999999987754 36 899999 9999888642 4799999999764 3 22
Q ss_pred -ceEEEeccccccC--CHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 -VDAIFMKWVLTTW--TDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 -~D~v~~~~~lh~~--~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++..++||+ +.++...+|+++.+.|||||++++.
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 4999999999996 3456678999999999999999875
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=7.3e-18 Score=136.45 Aligned_cols=140 Identities=13% Similarity=0.034 Sum_probs=97.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CC----------------------------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PE---------------------------- 110 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~---------------------------- 110 (244)
..++.+|||||||+|.++..+++.+. .+ ++++|+ +.|++.|++. ..
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~-~~-v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcccc-Cc-EEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 34568999999999998877765542 25 999999 9999988642 00
Q ss_pred ----e-eEEeCCCCC-----CCCc--ceEEEeccccccCCH--HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh
Q 041308 111 ----V-THIGGDMFK-----SIHV--VDAIFMKWVLTTWTD--DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176 (244)
Q Consensus 111 ----i-~~~~gd~~~-----~~p~--~D~v~~~~~lh~~~~--~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~ 176 (244)
+ .....+... +.+. .|+|++..++||++. ++...+++++.+.|||||++++.+........
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~----- 201 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM----- 201 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-----
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce-----
Confidence 0 111122211 2233 499999999999863 45678999999999999999998874332100
Q ss_pred hhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 177 ~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..+ .......++.++++++|++|||+++++...
T Consensus 202 ----~~~------~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 202 ----VGK------REFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp ----ETT------EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----ecc------ccccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 000 011233468999999999999999988544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.5e-16 Score=126.96 Aligned_cols=133 Identities=8% Similarity=-0.039 Sum_probs=102.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------------------CCCeeEEeCCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------------------IPEVTHIGGDM 118 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------------------~~~i~~~~gd~ 118 (244)
.++..+|||+|||+|..+..|++.+ .+ ++++|+ +.+|+.+++ ..++++.++|+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G--~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 119 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRG--HS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI 119 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTT--CE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCC--Cc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence 5677899999999999999999864 46 999999 999876542 15789999999
Q ss_pred CCCC--Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 119 FKSI--HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 119 ~~~~--p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
++.. +. .|+|+...++||+++++....++++.++|||||++++.....+..... +.-
T Consensus 120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-------------------gpp 180 (229)
T d2bzga1 120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-------------------GPP 180 (229)
T ss_dssp GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-------------------CSS
T ss_pred hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-------------------CCC
Confidence 7752 22 499999999999999999999999999999999988876654332110 001
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEE
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
...+.+++++++.+ +|.+..++.
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~le~ 203 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCLEK 203 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEEEE
Confidence 12468899999954 677655543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.64 E-value=3.2e-16 Score=123.22 Aligned_cols=102 Identities=10% Similarity=0.013 Sum_probs=81.1
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC-CCc--c-eEEE
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-IHV--V-DAIF 129 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-~p~--~-D~v~ 129 (244)
.++ ++++.+|||+|||+|..+.++++..|+.+ ++++|+ |.|++.+++ ..++.++.+|...+ .+. . ++.+
T Consensus 51 ~l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~-V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 51 RLK-LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCC-CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCC-CCCCCEEEEeCCcCCHHHHHHHHhccCCe-EEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE
Confidence 355 88999999999999999999999999888 999999 999988765 37899999998765 222 2 2222
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+.+.++|..+ ...+++++++.|||||++++.+.
T Consensus 129 v~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 129 IYQDIAQKNQ--IEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecccChhh--HHHHHHHHHHHhccCCeEEEEEE
Confidence 2344555444 45889999999999999999865
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3e-16 Score=128.65 Aligned_cols=153 Identities=15% Similarity=0.054 Sum_probs=99.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH----cCCC--CeEEEeec-hHHHHhCCCC-------CCeeE--EeCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK----HCFI--CEGINFDL-PEVVAKAPSI-------PEVTH--IGGD 117 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p~~--~~~~~~D~-~~~i~~a~~~-------~~i~~--~~gd 117 (244)
..++..+...++..+|||||||+|.++..+++. +++. + ++++|. +.|++.+++. .++.+ ...+
T Consensus 29 ~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~-~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 107 (280)
T d1jqea_ 29 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN-NEVVEPSAEQIAKYKELVAKISNLENVKFAWHKET 107 (280)
T ss_dssp HHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEE-EEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSC
T ss_pred HHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceE-EEEEeCcHHHHHHHHHHHhhccccccccccchhhh
Confidence 345555432445568999999999998777654 4543 4 789999 8999887642 33433 3333
Q ss_pred CC-------CCCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh
Q 041308 118 MF-------KSIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT 188 (244)
Q Consensus 118 ~~-------~~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~ 188 (244)
+. .+.+. .|+|++.+++||+++. .++|++++++|+|||.+++..... . ..+......... ...
T Consensus 108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~--~--~~~~~l~~~~~~--~~~ 179 (280)
T d1jqea_ 108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSG--S--SGWDKLWKKYGS--RFP 179 (280)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECT--T--SHHHHHHHHHGG--GSC
T ss_pred hhhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecC--c--chHHHHHHHHHH--hcC
Confidence 31 12222 4999999999999876 489999999999999999876521 1 122111111111 111
Q ss_pred hhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 189 IYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 189 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
.......++.+++.++|.+.||+....
T Consensus 180 -~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 180 -QDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp -CCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred -CCcccccCCHHHHHHHHHHCCCceEEE
Confidence 112345578899999999999986543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=1.3e-16 Score=127.77 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEec-cccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMK-WVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~-~~lh~~~ 138 (244)
++..+|||+|||+|.++..+++.. .+ ++++|+ +.|++.|+++....++.+|+.+. ++. .|+|++. .++||++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~-v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERG--FE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTT--CE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCCEEEEECCCCchhcccccccc--eE-EEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 456899999999999999998763 56 999999 99999998764455778888664 544 4999974 6899998
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 139 DDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+.+ ++|+++.++|||||.+++..
T Consensus 118 d~~--~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 NKD--KAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred hHH--HHHHHHHhhcCcCcEEEEEE
Confidence 874 78999999999999999864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.8e-16 Score=129.11 Aligned_cols=139 Identities=12% Similarity=0.015 Sum_probs=96.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CC--------------------------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PE-------------------------- 110 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~-------------------------- 110 (244)
...+.++||||||+|.+....+..... + ++++|. +.|++.+++. ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~-v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-D-ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-E-EEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-e-EEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 345689999999999887655544433 6 999999 9999977631 00
Q ss_pred -----eeEEeCCCCCC-------CCc--ceEEEeccccccCCH--HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchH
Q 041308 111 -----VTHIGGDMFKS-------IHV--VDAIFMKWVLTTWTD--DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQ 174 (244)
Q Consensus 111 -----i~~~~gd~~~~-------~p~--~D~v~~~~~lh~~~~--~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~ 174 (244)
......|..++ .+. .|+|++.+++||++. ++..+++++++++|||||.|++.+.......
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~---- 205 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY---- 205 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE----
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc----
Confidence 12334565543 111 499999999999863 3567899999999999999999886432210
Q ss_pred HhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 175 RTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 175 ~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
.... ........+.++++++|+++||++++++.
T Consensus 206 ------~~~~-----~~~~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 206 ------LAGE-----ARLTVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp ------EETT-----EEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ------ccCC-----cccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 0000 01112346899999999999999987654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=6.4e-16 Score=126.11 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=82.1
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEEe
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIFM 130 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~~ 130 (244)
+.+.++ .+..+|||||||+|.++..+++.+|+.+ ++++|+ +.|++.|++. +++++..+|+.+. ++. .|+|++
T Consensus 77 l~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 77 LRERLD--DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR 153 (268)
T ss_dssp HHHHSC--TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred HHHhcC--CCCCEEEEeCCCCcHHHHHHHHHCCCCE-EEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEee
Confidence 344443 4568999999999999999999999999 999999 9999988764 8999999999764 554 399999
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+++|| +++++|+|||||++++..+
T Consensus 154 ~~~~~~---------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 154 IYAPCK---------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp ESCCCC---------HHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHH---------HHHHHHHhCCCcEEEEEee
Confidence 888876 4678999999999999865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-16 Score=127.49 Aligned_cols=146 Identities=12% Similarity=0.040 Sum_probs=96.1
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCC---C
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFK---S 121 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~---~ 121 (244)
+.++.+++... ..+.+|||||||+|..+..+++..+ .+ ++++|+ +.+++.|++. .++.++.+|... +
T Consensus 41 ~~~~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~-~~-v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 116 (229)
T d1zx0a1 41 PYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-DE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT 116 (229)
T ss_dssp HHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCE-EE-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG
T ss_pred HHHHHHHHhhc--cCCCeEEEeeccchHHHHHHHHcCC-Ce-EEEeCCCHHHHHHHHHHhhhcccccccccccccccccc
Confidence 33444555443 4468999999999999999997654 36 899999 9999998753 567777777532 2
Q ss_pred CCc--ceEEE-----eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 122 IHV--VDAIF-----MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 122 ~p~--~D~v~-----~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
++. .|+|+ ....++|+.+. ..++++++|+|||||+|++.+..... .......+ ..
T Consensus 117 ~~~~~fD~i~fD~~~~~~~~~~~~~~--~~~~~~~~r~LkpGG~~~~~~~~~~~-------~~~~~~~~---------~~ 178 (229)
T d1zx0a1 117 LPDGHFDGILYDTYPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWG-------ELMKSKYS---------DI 178 (229)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHH-------HHTTTTCS---------CH
T ss_pred cccccccceeecccccccccccccCH--HHHHHHHHHHcCCCcEEEEEecCCcc-------hhhhhhhh---------hc
Confidence 443 36665 56677776654 58999999999999999885432110 00000011 01
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEE
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
.....+.+...+.++||+..++..
T Consensus 179 ~~~~~~~~~~~l~~agF~~~~i~~ 202 (229)
T d1zx0a1 179 TIMFEETQVPALLEAGFRRENIRT 202 (229)
T ss_dssp HHHHHHHTHHHHHHTTCCGGGEEE
T ss_pred chhhhhHHHHHHHHCCCeeEEEEE
Confidence 111244566778899999776643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=3.2e-15 Score=116.10 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=86.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p~ 124 (244)
+-+++.++ ..+..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ .++++..+|+++.++.
T Consensus 42 ~lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~-v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~ 117 (194)
T d1dusa_ 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADEVK--S-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--c-cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhcc
Confidence 34667776 67789999999999999999998776 4 888999 9999888752 5689999999887654
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...+|+.. +...++++++.+.|||||++++..
T Consensus 118 ~~fD~Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 118 RKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEE
Confidence 49999988877544 445689999999999999998753
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=1.2e-14 Score=115.38 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=101.5
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC--CCc----c
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS--IHV----V 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~--~p~----~ 125 (244)
+.++ ++++.+|||+|||+|.++.++++.. |+.+ ++++|. +.+++.+++ ..++..+.+|...+ ++. .
T Consensus 67 ~~l~-i~pG~~VLDlGaGsG~~t~~la~~VG~~G~-V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 67 KNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred cccc-cCCCCEEEEeccCCCHHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccce
Confidence 3444 8899999999999999999999985 7788 999999 999887754 36788888888654 221 2
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++ .+++.. +...+++++++.|||||+++++......+...+.. ....+..++
T Consensus 145 D~i~~--d~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~---------------------~v~~~v~~l 199 (227)
T d1g8aa_ 145 DVIFE--DVAQPT--QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPE---------------------QVFREVERE 199 (227)
T ss_dssp EEEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHH---------------------HHHHHHHHH
T ss_pred EEEEE--Eccccc--hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHH---------------------HHHHHHHHH
Confidence 65553 344433 34678999999999999999875422211110100 012234444
Q ss_pred HHhCCCCeEEEEEccc---eeEEEeecCc
Q 041308 206 GFSTGFPHLRAFISII---FTLFLSSKSN 231 (244)
Q Consensus 206 l~~aGf~~~~~~~~~~---~~~~~~~~~~ 231 (244)
.+.||++.+...+.. ++.+++++|.
T Consensus 200 -~~~gf~iie~i~L~p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 200 -LSEYFEVIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp -HHTTSEEEEEEECTTTSSSEEEEEEECC
T ss_pred -HHcCCEEEEEEcCCCCCCceEEEEEEeC
Confidence 467999999877643 5788888874
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=6.2e-15 Score=118.90 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=92.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
+++.+|||+|||+|.+++.+++.. .+ ++++|+ +.+++.|+++ -++.+..+|..+.++. +|+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g--~~-V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLG--GK-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT--CE-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred CccCEEEEcccchhHHHHHHHhcC--CE-EEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence 567899999999999999888754 57 999999 9999999863 4567888888655554 59998764433
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
....+++++.++|||||++++.+... ...+++.+.++++||++++
T Consensus 196 -----~l~~l~~~~~~~LkpGG~lilSgil~------------------------------~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 196 -----LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp -----HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEE
T ss_pred -----cHHHHHHHHHHhcCCCcEEEEEecch------------------------------hhHHHHHHHHHHCCCEEEE
Confidence 34678999999999999999865321 0145678889999999988
Q ss_pred EEEcc
Q 041308 216 AFISI 220 (244)
Q Consensus 216 ~~~~~ 220 (244)
.....
T Consensus 241 ~~~~~ 245 (254)
T d2nxca1 241 EAAEG 245 (254)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 76543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-14 Score=120.14 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=89.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------------CCCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---------------IPEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------------~~~i~~~~g 116 (244)
...+++.+. +++..+|||+|||+|..+..+++..+..+ ++|+|+ +.+++.|++ ..+++++.|
T Consensus 140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~-~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSE-EEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 456788887 88899999999999999999999888777 999999 988887753 257999999
Q ss_pred CCCCC-CCc----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 117 DMFKS-IHV----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 117 d~~~~-~p~----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
|+.+. +.+ +|+|++...+| . ++..+.|+++.+.|||||++++.+...+.
T Consensus 218 d~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~ 271 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPL 271 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred cccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCCCcEEEEecccCCC
Confidence 99875 332 47777765553 3 34468899999999999999998876553
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.51 E-value=9.9e-15 Score=117.24 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=83.8
Q ss_pred HHHHHHHcccccc----hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-----
Q 041308 40 LMRKAMSRVFVPF----MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI----- 108 (244)
Q Consensus 40 ~f~~~~~~~~~~~----~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~----- 108 (244)
.|...|.+.++.+ +..++..++ .+++.+|||+|||+|.++..+++. .|+.+ ++++|. +.+++.|+++
T Consensus 57 ~~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~-V~~vD~~e~~~~~A~~n~~~~~ 134 (250)
T d1yb2a1 57 YFGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFY 134 (250)
T ss_dssp GHHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTS
T ss_pred HHHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhc
Confidence 3555566555543 234677777 899999999999999999999987 57788 999999 9999988753
Q ss_pred --CCeeEEeCCCCCCCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 --PEVTHIGGDMFKSIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 --~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.++++..+|+.+.+++ .|+|++. ++++ ..+++++.++|||||++++.-+
T Consensus 135 ~~~nv~~~~~Di~~~~~~~~fD~V~ld-----~p~p--~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 135 DIGNVRTSRSDIADFISDQMYDAVIAD-----IPDP--WNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CCTTEEEECSCTTTCCCSCCEEEEEEC-----CSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred CCCceEEEEeeeecccccceeeeeeec-----CCch--HHHHHHHHHhcCCCceEEEEeC
Confidence 6899999999877665 4998853 3443 2679999999999999998543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=9.5e-15 Score=118.10 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=96.4
Q ss_pred CchHHHHHHHHHHcccccc----hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCC
Q 041308 34 KPKMNGLMRKAMSRVFVPF----MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~----~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
.|.... |-..|...++.+ +..++..++ .+++.+|||+|||+|.++..|++. .|+.+ ++.+|. +++++.|++
T Consensus 63 ~pt~~~-~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~-V~~~d~~~~~~~~Ar~ 139 (264)
T d1i9ga_ 63 RPLLVD-YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARR 139 (264)
T ss_dssp CCCHHH-HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHH
T ss_pred CCCHHH-HHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcE-EEEecCCHHHHHHHHH
Confidence 354443 445566666644 344778888 899999999999999999999987 68889 999999 999999876
Q ss_pred C---------CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 108 I---------PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 108 ~---------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ +++.++.+|+.+. +++ .|+|++ +++++. .++.++.++|||||++++..+
T Consensus 140 n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 140 NVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp HHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEES
T ss_pred hhhhhccCCCceEEEEecccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeC
Confidence 2 7899999999765 665 499875 355553 779999999999999998665
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=5.2e-15 Score=122.00 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHccccc---chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---
Q 041308 36 KMNGLMRKAMSRVFVP---FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--- 108 (244)
Q Consensus 36 ~~~~~f~~~~~~~~~~---~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--- 108 (244)
..++.++..+...... ..+-+.+.+. .++..+|||+|||+|..+..|+++. .+ ++++|+ +.|++.|++.
T Consensus 25 ~~~~~~~~~~~~~~~r~~~~~~~l~~~l~-~~~~~~vLD~GcG~G~~~~~la~~g--~~-v~gvD~S~~ml~~A~~~~~~ 100 (292)
T d1xvaa_ 25 EAARVWQLYIGDTRSRTAEYKAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG--FS-VTSVDASDKMLKYALKERWN 100 (292)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHHH-HTTCCEEEESSCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchhhhHHHHHHHHHHHhh-hcCCCEEEEecCCCcHHHHHHHHcC--Ce-eeeccCchHHHHHHHHHHHh
Confidence 3444555555443321 1222334443 4456899999999999999999874 56 999999 9999988752
Q ss_pred -------CCeeEEeCCCCCC---CC--c-ceEEEe-ccccccCCH-----HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 109 -------PEVTHIGGDMFKS---IH--V-VDAIFM-KWVLTTWTD-----DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 109 -------~~i~~~~gd~~~~---~p--~-~D~v~~-~~~lh~~~~-----~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+..+...|+... +| . .|+|++ ..+++|+++ ++...+|++++++|||||+|++-
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 101 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp TTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 2345666666432 23 2 487775 468888864 45678999999999999999883
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.47 E-value=3.5e-14 Score=110.82 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=78.4
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------CCCeeEEeCCCCCC---CCc--ceEEEecccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------IPEVTHIGGDMFKS---IHV--VDAIFMKWVL 134 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~~~i~~~~gd~~~~---~p~--~D~v~~~~~l 134 (244)
..|||||||+|.++..+++.+|+.. ++++|+ +.++..+.+ ..++.++.+|+... ++. .|.|++.+..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~-~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCc-EEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 5789999999999999999999999 999999 888877654 27899999998653 554 3888888777
Q ss_pred ccCCHHH------HHHHHHHHHHHcCCCCEEEEec
Q 041308 135 TTWTDDE------CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 135 h~~~~~~------~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+..... ...+|+.++++|||||.|+|..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6554432 1378999999999999999864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=3.6e-14 Score=111.66 Aligned_cols=99 Identities=14% Similarity=0.229 Sum_probs=83.3
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
..+++.++ ++++.+|||||||+|..+..+++.. +..+ ++++|. +.+++.|+++ .++.++.+|..+.++.
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~-V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCc-EEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence 34677787 8999999999999999999999875 5678 999999 9999998863 7889999998776443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++...++++++ ++.+.|||||++++.
T Consensus 143 ~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred cchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 499999999999875 356789999999884
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.46 E-value=1.6e-14 Score=111.42 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=81.7
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CC
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IH 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p 123 (244)
.++..+. ..++.+|||+|||+|.++..+++..+ + ++++|. +.+++.|+++ ++++++.+|+.+. .+
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~-V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--R-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccce--E-EEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 3555666 78889999999999999999987653 6 999999 9999999863 6999999998654 23
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
..|+|++....+++ ..+++++.+.|||||++++..
T Consensus 100 ~~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 100 DIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp CEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEE
T ss_pred CcCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEe
Confidence 46999988766552 467999999999999998754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=9.5e-14 Score=118.45 Aligned_cols=113 Identities=14% Similarity=0.221 Sum_probs=87.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------CCeeE-E
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------PEVTH-I 114 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------~~i~~-~ 114 (244)
++.++++.++ ++++.+|||||||+|..+..+++.++..+ ++|+|+ +.+++.|++. ..+.+ .
T Consensus 204 ~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~-v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 204 FLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 4566888887 89999999999999999999999988667 999999 9999988752 22333 3
Q ss_pred eCCCCCC------CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 115 GGDMFKS------IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 115 ~gd~~~~------~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.+++++. ++.+|+|++.+.+| . ++..+.|+++.+.|||||++++.+...+..
T Consensus 282 ~~~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 282 KKSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 339 (406)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred eechhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence 5666554 23357888765443 2 445688999999999999999988765543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=4.5e-14 Score=114.59 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=107.3
Q ss_pred CchHHHHHHHHHHcccccc----hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC
Q 041308 34 KPKMNGLMRKAMSRVFVPF----MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~----~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~ 107 (244)
.|...+ |...|.+.++.+ +..++..++ .+++.+|||+|||+|.++..+++.. |+.+ ++++|. +.+++.|++
T Consensus 70 ~p~~~d-~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~-V~~vD~~~~~~~~A~~ 146 (266)
T d1o54a_ 70 IPSLID-EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAES 146 (266)
T ss_dssp CCCHHH-HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHH
T ss_pred CCCHHH-HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHH
Confidence 455544 445666655544 334788888 9999999999999999999999875 7888 999999 999999986
Q ss_pred C-------CCeeEEeCCCCCCCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhh
Q 041308 108 I-------PEVTHIGGDMFKSIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA 178 (244)
Q Consensus 108 ~-------~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~ 178 (244)
+ .++.+..+|+...++. .|.|+ ++++++ ..+++++.++|||||++++..++..
T Consensus 147 ~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~-----~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~----------- 208 (266)
T d1o54a_ 147 NLTKWGLIERVTIKVRDISEGFDEKDVDALF-----LDVPDP--WNYIDKCWEALKGGGRFATVCPTTN----------- 208 (266)
T ss_dssp HHHHTTCGGGEEEECCCGGGCCSCCSEEEEE-----ECCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------
T ss_pred HHHHhccccCcEEEeccccccccccceeeeE-----ecCCCH--HHHHHHHHhhcCCCCEEEEEeCccc-----------
Confidence 3 6788888887666554 47765 456665 3789999999999999998653210
Q ss_pred hhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 179 LLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 179 ~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
..++..+.++++||...++..
T Consensus 209 -------------------Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 209 -------------------QVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp -------------------HHHHHHHHHHHSSEEEEEEEC
T ss_pred -------------------HHHHHHHHHHHCCceeEEEEE
Confidence 023456667888998777544
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=4.7e-13 Score=108.65 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=103.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~l 134 (244)
+...+|||+|||+|..+..+++..|+.+ ++++|+ +..++.|+++ .+++++.+|++++++. .|+|+++--.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~-v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcce-eeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchh
Confidence 4557899999999999999999999999 999999 9999999874 6899999999998664 5999987332
Q ss_pred cc------------CCH-----------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 135 TT------------WTD-----------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 135 h~------------~~~-----------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
-. +.+ +-..++++++.+.|+|||.+++ |. +..
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Ei--g~~---------------------- 240 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EH--GWQ---------------------- 240 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-EC--CSS----------------------
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EE--Cch----------------------
Confidence 11 000 2245688999999999999987 22 111
Q ss_pred cCceecCHHHHHHHHHhCCCCeEE-EEEccceeEEEeec
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLR-AFISIIFTLFLSSK 229 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~-~~~~~~~~~~~~~~ 229 (244)
..+.+.++++++||+.++ ..+..+..++++++
T Consensus 241 ------q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 241 ------QGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp ------CHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ------HHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 145678899999998665 56677777777764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.38 E-value=8e-13 Score=102.99 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=74.8
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------CCCeeEEeCCCCCC---CCc--ceEEEeccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------IPEVTHIGGDMFKS---IHV--VDAIFMKWV 133 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~~~i~~~~gd~~~~---~p~--~D~v~~~~~ 133 (244)
...|||||||+|.++..+++.+|+.. ++++|+ +.++..+.+ .+++.+..+|+.+- ++. .|.|++.+.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~-~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCc-eEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 35799999999999999999999999 999999 888877754 27899999998653 444 377776544
Q ss_pred cccCCHHH------HHHHHHHHHHHcCCCCEEEEec
Q 041308 134 LTTWTDDE------CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 lh~~~~~~------~~~~l~~~~~~L~pgG~lii~d 163 (244)
-....... ...+|+.+.++|||||.|++..
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 32211110 1478999999999999998854
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=6e-13 Score=105.27 Aligned_cols=99 Identities=20% Similarity=0.138 Sum_probs=80.3
Q ss_pred HHhccCC-CCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCC
Q 041308 55 SVLDGYD-GFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFK 120 (244)
Q Consensus 55 ~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~ 120 (244)
.+++.+. ..+++.+|||||||+|..+..+++. .|..+ ++++|. +++++.|+++ .++.+..+|..+
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~-V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCce-EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 4555552 2678899999999999999888876 46778 999999 9999888752 578999999877
Q ss_pred CCCc---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 121 SIHV---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 121 ~~p~---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
..+. .|+|++...++++++ ++.+.|||||++++.
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 6443 499999999998775 356789999999984
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.27 E-value=3.2e-12 Score=100.78 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=79.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCCCCc---ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKSIHV---VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~~p~---~D 126 (244)
.+++.++ ++++.+|||||||+|.++..+++.. .+ ++.+|. +.+++.|++ ..++.++.+|.....+. .|
T Consensus 61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~-V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cc-cccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 4677787 8999999999999999998888775 35 899998 888888765 38899999998776554 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+|++...++++++. +.+.|||||++++.
T Consensus 137 ~Iiv~~a~~~ip~~--------l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLCK--------PYEQLKEGGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred HHHhhcchhhhhHH--------HHHhcCCCCEEEEE
Confidence 99999998887752 45679999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.7e-12 Score=106.55 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=92.4
Q ss_pred CchHHHHHHHHHHcccccc----hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCC
Q 041308 34 KPKMNGLMRKAMSRVFVPF----MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~----~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
.|.... |...|...++.+ +..++..++ +.++.+|||+|||+|.++..|++. .|+.+ ++.+|. +.+++.|++
T Consensus 65 ~Pt~~d-~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~-V~t~E~~~~~~~~A~~ 141 (324)
T d2b25a1 65 RPALED-YVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKK 141 (324)
T ss_dssp CCCHHH-HHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHH
T ss_pred CCCHHH-HhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcE-EEEecCCHHHHHHHHH
Confidence 455443 555676666644 344778888 999999999999999999999987 57888 999999 999988774
Q ss_pred C-----------------CCeeEEeCCCCCC---CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 108 I-----------------PEVTHIGGDMFKS---IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 108 ~-----------------~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+ +++.+..+|+.+. ++. .|.|++ +++++. .++.++.++|||||++++.-++
T Consensus 142 n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 142 NYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp HHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEESS
T ss_pred HHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeCC
Confidence 2 5799999998654 333 498875 234332 5789999999999999986543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=7.8e-12 Score=103.80 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=72.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC-------CCCeeEEeCCCCCC-CCc--ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS-------IPEVTHIGGDMFKS-IHV--VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~-------~~~i~~~~gd~~~~-~p~--~D~v~~~~~l 134 (244)
++.+|||||||+|.++..+++.++. + ++++|.+++...+++ .++++++.+|..+. ++. .|+|++..+.
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~-~-V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGAR-K-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS-E-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCC-E-EEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 4589999999999999998887543 6 999998333333322 27899999999775 553 4999988777
Q ss_pred ccCCHH-HHHHHHHHHHHHcCCCCEEEE
Q 041308 135 TTWTDD-ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 135 h~~~~~-~~~~~l~~~~~~L~pgG~lii 161 (244)
|++..+ ....++..+.+.|||||+++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 765543 356789999999999999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=1.1e-11 Score=103.43 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=73.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC-------CCCeeEEeCCCCCC-CCc--ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS-------IPEVTHIGGDMFKS-IHV--VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~-------~~~i~~~~gd~~~~-~p~--~D~v~~~~~l 134 (244)
++.+|||||||+|.++..+++.+.. + ++++|...++..+++ ..++.++.+|+.+. +|. .|+|++..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~-~-V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAK-H-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCS-E-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCC-E-EEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 3589999999999999988876533 5 999999556555553 27899999999775 664 4999988777
Q ss_pred ccCCHH-HHHHHHHHHHHHcCCCCEEE
Q 041308 135 TTWTDD-ECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 135 h~~~~~-~~~~~l~~~~~~L~pgG~li 160 (244)
+++..+ ....++..+.+.|||||+++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 765543 34567888899999999885
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.8e-11 Score=100.11 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=73.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------CCCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------IPEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
..++.+|||||||+|.++..+++.++ -+ ++++|. +.+...++. .++++++.+|..+. .+. .|+|++..
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~-V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 110 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CE-EEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEee
Confidence 33468999999999999999998765 36 999999 655432221 27899999999775 553 49999988
Q ss_pred ccccCCHH-HHHHHHHHHHHHcCCCCEEEE
Q 041308 133 VLTTWTDD-ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 133 ~lh~~~~~-~~~~~l~~~~~~L~pgG~lii 161 (244)
+.|+...+ ....++....+.|||||+++-
T Consensus 111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 111 MGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 88776544 345667777889999999874
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=3.7e-11 Score=92.62 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=74.8
Q ss_pred CcceEEEEcCCccHHHHH----HHHHc----CCCCeEEEeec-hHHHHhCCCC---------------------------
Q 041308 65 GVKRLVDVGGSAGDCLRI----ILQKH----CFICEGINFDL-PEVVAKAPSI--------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~----l~~~~----p~~~~~~~~D~-~~~i~~a~~~--------------------------- 108 (244)
+.-+|+++|||||.-+-. +.+.. ..++ +++.|+ +.+++.|++.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~-I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceE-EEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 457999999999995433 33321 2346 899999 9999887631
Q ss_pred ----------CCeeEEeCCCCCC-CC-c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 109 ----------PEVTHIGGDMFKS-IH-V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 109 ----------~~i~~~~gd~~~~-~p-~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
..+.+...+...+ .+ . .|+|+|+++|++++++...+++++++++|+|||.|++-.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 2355666666654 22 2 499999999999999999999999999999999999854
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.13 E-value=3.3e-11 Score=94.23 Aligned_cols=98 Identities=22% Similarity=0.163 Sum_probs=80.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-- 124 (244)
..+++.++ .++..+|||||||+|..+..+++.. +.+ ++++|. +.+++.++++ .++.++.+|..+..|.
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~-V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-Cce-eEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence 44677777 8899999999999999998888764 356 889998 8899888853 8999999999887554
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|.|++...+.++++. +.+.|+|||++++.
T Consensus 145 pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp CEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred cceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 4999999999887763 44579999999984
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=8.5e-11 Score=92.49 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=78.6
Q ss_pred HHhccC--CCCCCcceEEEEcCCccHHHHHHHHHc------CCCCeEEEeec-hHHHHhCCCC-----------CCeeEE
Q 041308 55 SVLDGY--DGFKGVKRLVDVGGSAGDCLRIILQKH------CFICEGINFDL-PEVVAKAPSI-----------PEVTHI 114 (244)
Q Consensus 55 ~l~~~~--~~~~~~~~vLDvG~G~G~~~~~l~~~~------p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~ 114 (244)
.+++.+ + +++..+|||||||+|..+..+++.. +..+ ++.+|. +.+++.++++ .++.+.
T Consensus 69 ~~l~~L~~~-l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~-V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~ 146 (223)
T d1r18a_ 69 FALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 146 (223)
T ss_dssp HHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccE-EEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence 456655 4 7788999999999999988887753 3457 999999 9888888653 589999
Q ss_pred eCCCCCCCCc---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 115 GGDMFKSIHV---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 115 ~gd~~~~~p~---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+|..+..+. .|+|++...+.++++. +.+.|||||++++.
T Consensus 147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 147 EGDGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLASGGRLIVP 189 (223)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred ecccccccccccceeeEEEEeechhchHH--------HHHhcCCCcEEEEE
Confidence 9999876543 4999999999887752 46789999999884
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=4.4e-11 Score=91.96 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=88.1
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS--- 121 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~--- 121 (244)
-+.+++++.++ ..+...+||++||+|..+..+++.+|+.+ ++++|. +.|++.+++. .++.++.+++.+.
T Consensus 10 Vll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~-vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 10 VMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL 87 (192)
T ss_dssp TTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred hHHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCe-EEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH
Confidence 34667888777 67789999999999999999999999999 999999 9999998752 6899999998542
Q ss_pred ---CC--cceEEEecccc--ccCC-----HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 122 ---IH--VVDAIFMKWVL--TTWT-----DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 122 ---~p--~~D~v~~~~~l--h~~~-----~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
++ ..|.|++-.-+ +++. -......|..+.++|+|||+++++...
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 22 23888765433 1111 123457899999999999999998763
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=3.1e-10 Score=91.26 Aligned_cols=121 Identities=14% Similarity=0.028 Sum_probs=89.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+++.+|||+|||+|.++..+++.. ..+ ++++|+ |..++.++++ +++++..+|+++..+. +|.|++..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~-V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~ 182 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 182 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcE-EEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECC
Confidence 4578999999999999999999874 567 999999 9998888753 6799999999876544 59888763
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
.-. ...++..+.+.|+|||.+.+.+.+..+.. .....+.+.++.++.||+
T Consensus 183 p~~------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~------------------------~~~~~e~~~~~~~~~g~~ 232 (260)
T d2frna1 183 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYD 232 (260)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCE
T ss_pred CCc------hHHHHHHHHhhcCCCCEEEEEeccccccc------------------------hhhHHHHHHHHHHHcCCc
Confidence 321 23578889999999999987655322110 011245567788889997
Q ss_pred eEE
Q 041308 213 HLR 215 (244)
Q Consensus 213 ~~~ 215 (244)
+..
T Consensus 233 v~~ 235 (260)
T d2frna1 233 VEK 235 (260)
T ss_dssp EEE
T ss_pred eEE
Confidence 653
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.5e-08 Score=79.42 Aligned_cols=73 Identities=8% Similarity=-0.072 Sum_probs=58.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC----C---Cc--ce
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS----I---HV--VD 126 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~----~---p~--~D 126 (244)
+...++||+|||+|..+..++++.|+++ ++++|+ +..++.|+++ .++.+...+..+. + .. .|
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~-~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCcc-ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 3456999999999999999999999999 999999 9999999864 6788887654433 1 12 49
Q ss_pred EEEeccccccC
Q 041308 127 AIFMKWVLTTW 137 (244)
Q Consensus 127 ~v~~~~~lh~~ 137 (244)
+|+++--.+.-
T Consensus 139 ~ivsNPPY~~~ 149 (250)
T d2h00a1 139 FCMCNPPFFAN 149 (250)
T ss_dssp EEEECCCCC--
T ss_pred EEEecCccccc
Confidence 99999887653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.82 E-value=1.4e-09 Score=80.42 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=69.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC----CcceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI----HVVDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~----p~~D~v~~~~ 132 (244)
.+.+|||+|||+|.++.+++.+... + ++.+|. +.+++.++++ .+++++.+|..+.+ ...|+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~-v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-A-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-E-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-e-eeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 4689999999999999999988764 6 999999 8888776652 67999999986642 2259998864
Q ss_pred ccccCCHHHHHHHHHHHH--HHcCCCCEEEEe
Q 041308 133 VLTTWTDDECKLIMENYY--KALLAGRKLIAC 162 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~ 162 (244)
-.. .......+..+. +.|+|||.+++-
T Consensus 92 Py~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 92 PYA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp SSH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 432 233345566554 469999998863
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=1e-09 Score=91.03 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=76.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CC----cceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IH----VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p----~~D~ 127 (244)
.+++.+|||+|||+|.++..+++... .+ ++++|+ +.+++.++++ ++++++.+|+++. ++ ..|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~-V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~ 220 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI 220 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cE-EEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence 35678999999999999999997754 36 999999 9999988763 6789999998764 21 2499
Q ss_pred EEeccccccCCHH-------HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDD-------ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~-------~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|++.--...-... .-.++++.+.++|+|||.|+.+.+
T Consensus 221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9975332211111 124578889999999999998775
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.74 E-value=1.4e-08 Score=77.84 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCcceEEEecccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
+.+|||+|||+|.++..++...+. + ++++|. +.+++.|+++ .+++++.+|+.+.-...|+|+++--+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~-~-V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE-S-VTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS-E-EEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC-c-ccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence 589999999999999888876553 6 999999 9999998875 78999999985533336999987554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=4.2e-09 Score=82.08 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=70.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---------ce
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---------VD 126 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---------~D 126 (244)
++.+|||+|||+|..+..+++..+ +.+ ++.+|. +.+.+.++++ ++|+++.||..+.+|. .|
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~-v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccE-EEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 368999999999999999998875 567 999999 9888888753 6899999998654332 38
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+|++-+ ..........+.+..+.|||||.+++ |.+
T Consensus 135 ~ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~-Ddv 169 (214)
T d2cl5a1 135 MVFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLA-DNV 169 (214)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTTCEEEEEEEEE-SCC
T ss_pred eeeecc---cccccccHHHHHHHhCccCCCcEEEE-eCc
Confidence 887652 21222223346777888999997654 443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.66 E-value=2.9e-09 Score=87.97 Aligned_cols=97 Identities=16% Similarity=0.073 Sum_probs=73.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC----cceEEEe
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH----VVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p----~~D~v~~ 130 (244)
.+.+|||++||+|.++.+++... .+ ++++|. +.+++.++++ ++++++.+|.++. ++ ..|+|++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~--~~-V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGF--RE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE--EE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhcC--Cc-EEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 46899999999999999988643 35 999999 9999988864 6899999998763 22 2599997
Q ss_pred ccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.--...... ..-..+++.+.+.|+|||.|+...+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 643221111 1124688899999999999998765
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=1.5e-08 Score=81.56 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=55.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc----ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV----VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~----~D~v~~~ 131 (244)
+..+++|+|||+|..+..++ .+|+.+ ++++|+ +..++.|+++ .++.+..+|+++.++. .|+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la-~~~~~~-v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVA-KFSDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHH-HHSSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhh-hcccce-eeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 45689999999999999987 569999 999999 9999988864 5788899999887543 4999977
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=2.4e-08 Score=77.88 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=75.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---------cc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------VV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------~~ 125 (244)
.+..+|||||||+|..+..+++..| +.+ ++.+|. +...+.|++. ++++++.||..+.++ ..
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~-i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCce-EEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 3479999999999999999999887 567 999999 8888777753 789999999865421 24
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+|++..- . +.....+..+.+.|+|||.+++-+..+.
T Consensus 137 D~ifiD~d----k-~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 137 DVAVVDAD----K-ENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp EEEEECSC----S-TTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEEeCC----H-HHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 88887532 2 2235678889999999999998655443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=7.7e-09 Score=85.03 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------CCCeeEEeCCCCCCC---Cc-ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------IPEVTHIGGDMFKSI---HV-VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------~~~i~~~~gd~~~~~---p~-~D~ 127 (244)
+++.+||.||+|.|..+..+++..|..+ ++++|+ |.+++.+++ .+|++++.+|..+.+ +. .|+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcce-EEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 4568999999999999999998767667 999999 999988774 279999999997652 33 499
Q ss_pred EEeccc--cccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWV--LTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~--lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++-.. ...-... -...+++.+++.|+|||.+++.
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 985432 1110000 0247899999999999998873
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.56 E-value=6.5e-08 Score=76.60 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=70.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCcc
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHVV 125 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~~ 125 (244)
+++.+++..+ .++..+|||||||+|.++..|++... + ++++|. +.+++.+++. ++++++.+|+++. ++..
T Consensus 17 ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~-v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--Q-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--E-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--c-eeEeeecccchhhhhhhhhhccchhhhhhhhhccccccc
Confidence 4566888887 78889999999999999999998854 5 899999 8888888754 6899999999885 6653
Q ss_pred -eEEEeccccccCCHHHHHHHH
Q 041308 126 -DAIFMKWVLTTWTDDECKLIM 146 (244)
Q Consensus 126 -D~v~~~~~lh~~~~~~~~~~l 146 (244)
+..+..+.=.+++.+-..+++
T Consensus 93 ~~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 93 QRYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp SEEEEEEECCSSSCHHHHHHHH
T ss_pred eeeeEeeeeehhhhHHHHHHHh
Confidence 454555565678875433333
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=1.3e-08 Score=82.78 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=73.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCCC---c-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSIH---V-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~p---~-~D~v 128 (244)
+.+.+||-||+|.|..++.+++..|..+ ++++|+ |.+++.+++. +|++++.+|.++.+. . .|+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 4568999999999999999997655556 999999 9999998862 799999999876532 2 4999
Q ss_pred EeccccccCCHHH---HHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDDE---CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~~---~~~~l~~~~~~L~pgG~lii~ 162 (244)
++-..-..-.... ...+++.+++.|+|||.+++.
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 9653321111100 247899999999999999874
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.53 E-value=2.5e-08 Score=80.61 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=72.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------------CCCeeEEeCCCCCCCC---
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------------IPEVTHIGGDMFKSIH--- 123 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------------~~~i~~~~gd~~~~~p--- 123 (244)
+++.+||.+|+|.|..+.++++ ++..+ ++++|+ |.+++.+++ .+|++++.+|..+.+.
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCce-EEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 4568999999999999999986 56557 999999 999998863 2789999999865422
Q ss_pred cceEEEeccccccCCHHH---HHHHHHHHHHHcCCCCEEEEe
Q 041308 124 VVDAIFMKWVLTTWTDDE---CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~---~~~~l~~~~~~L~pgG~lii~ 162 (244)
..|+|++-..- ...... ...+++.+++.|+|||.+++.
T Consensus 149 ~yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 149 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 25999865432 222221 147899999999999998864
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.50 E-value=9.9e-08 Score=73.38 Aligned_cols=69 Identities=19% Similarity=0.066 Sum_probs=54.8
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCcceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~~D~v~~~~~lh~ 136 (244)
+.+|||+|||+|.++..++.+.+ .+ ++++|. +.+++.++++ .++++..+|..+.-...|+|++.--.+.
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~-~~-v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS 121 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CCEEEECcCcchHHHHHHHHcCC-CE-EEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccc
Confidence 57999999999999998887654 46 999999 9999888763 6788999988554344699998766543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.48 E-value=2.1e-08 Score=82.64 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=73.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-------cce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-------VVD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-------~~D 126 (244)
..++.+|||++||+|.++.+++.... -+ ++++|. +..++.++++ .+++++.+|.++.++ ..|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga-~~-V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD 219 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGA-MA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD 219 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTB-SE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCC-ce-EEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence 45678999999999999998876433 35 899999 8888877752 579999999976432 149
Q ss_pred EEEeccc--------cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWV--------LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~--------lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|++--- ++... ..-.++++.+.+.|+|||.|++..+
T Consensus 220 ~Ii~DPP~f~~~~~~~~~~~-~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 220 IIIIDPPSFARNKKEVFSVS-KDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EEEECCCCC-----CCCCHH-HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEEcChhhccchhHHHHHH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9997422 11111 1235789999999999999998664
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.46 E-value=1.7e-07 Score=73.76 Aligned_cols=91 Identities=5% Similarity=0.110 Sum_probs=66.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC-CCcc
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-IHVV 125 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-~p~~ 125 (244)
+++.+++..+ .++..+|||||||+|.++..+++... + ++++++ +.+++..++ .++++++.+|+++. ++..
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~-v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--F-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--E-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--c-eEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccc
Confidence 4567888887 88899999999999999999998753 4 888898 888776653 48899999999885 6653
Q ss_pred -eEEEeccccccCCHHHHHHHHHHHH
Q 041308 126 -DAIFMKWVLTTWTDDECKLIMENYY 150 (244)
Q Consensus 126 -D~v~~~~~lh~~~~~~~~~~l~~~~ 150 (244)
...+..+.=.+++. .++.++.
T Consensus 85 ~~~~vv~NLPYnIss----~il~~ll 106 (235)
T d1qama_ 85 QSYKIFGNIPYNIST----DIIRKIV 106 (235)
T ss_dssp CCCEEEEECCGGGHH----HHHHHHH
T ss_pred ccceeeeeehhhhhH----HHHHHHH
Confidence 44333444344444 3445443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.45 E-value=3.5e-08 Score=79.55 Aligned_cols=98 Identities=21% Similarity=0.179 Sum_probs=73.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v 128 (244)
.++.+||-||+|.|..+..+++..+..+ ++++|+ |.+++.+++ .+|++++.+|..+.+ +. .|+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~-i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcce-EEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 4568999999999999999997655556 999999 999998875 279999999987642 22 4999
Q ss_pred EeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++-..-..-... -...+++.+.+.|+|||.++..
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 865332110000 0247899999999999999874
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=5.7e-08 Score=78.66 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=73.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc-ceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV-VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~-~D~ 127 (244)
.+.+.+||-||+|.|..+..+++..+..+ ++++|+ |.+++.+++. +|++++.+|..+-+ +. .|+
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~-v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcce-eeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 34568999999999999999996655566 999999 9999999752 89999999986542 22 499
Q ss_pred EEeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++-.. +-.... -...+++.+++.|+|||.+++.
T Consensus 155 Ii~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 155 IITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEECC------------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 996532 211111 1235799999999999999875
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.41 E-value=4.5e-07 Score=70.18 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=75.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC--cceEE
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH--VVDAI 128 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p--~~D~v 128 (244)
+++.+++.++ ...+.+|||.|||+|.++..+.++.+....+.++|+ +..+..+ .+..+..+|++...+ ..|++
T Consensus 7 i~~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~i 82 (223)
T d2ih2a1 7 VVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLI 82 (223)
T ss_dssp HHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEE
T ss_pred HHHHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhcccccccccee
Confidence 3445666666 566789999999999999999988776433899999 6554433 345677788876532 24888
Q ss_pred EeccccccCC----------HH-----------------HHHHHHHHHHHHcCCCCEEEEec
Q 041308 129 FMKWVLTTWT----------DD-----------------ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 129 ~~~~~lh~~~----------~~-----------------~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+......... .. -...++.++.+.|+|||+++++-
T Consensus 83 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 83 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 8775542211 00 12356788999999999988864
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.40 E-value=8.5e-08 Score=78.23 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=72.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-------cce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-------VVD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-------~~D 126 (244)
...+.+|||++||||.++..+++.. .+ ++.+|. +.+++.|+++ .+++++++|+++.+. ..|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~G--A~-V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD 206 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAAG--AE-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD 206 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTT--CE-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred ccCCCeEEEecCCCcHHHHHHHhCC--Ce-EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence 3456899999999999999998754 47 999999 9999988863 469999999976532 249
Q ss_pred EEEeccc---cc----cCC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWV---LT----TWT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~---lh----~~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|++.-- -. .+. .+....+++.+.+.|+|||.+++...
T Consensus 207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 9997411 10 011 12334677889999999998777654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.40 E-value=7.3e-08 Score=78.21 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCC---CCc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKS---IHV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~---~p~--~D~ 127 (244)
+++.+||=||+|.|..++++++..|-.+ ++++|+ +.+++.+++ .+|++++.+|.++. .+. .|+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCcceEEecCCchHHHHHHHhccccee-eEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 4568999999999999999997655556 999999 999999976 28999999997654 233 499
Q ss_pred EEeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEec
Q 041308 128 IFMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 128 v~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|++-..= -.... -...+++.+++.|+|||.+++.-
T Consensus 158 Ii~D~~d-p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 158 VIVDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCC-CCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 9964331 11111 12468999999999999999853
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.38 E-value=7.4e-08 Score=78.65 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~-~D~v 128 (244)
+.+.+||-||+|.|..++.+++..|-.+ ++++|+ +.+++.+++. +|++++.+|..+-+ +. .|+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~-v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcce-EEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 4568999999999999999997655456 999999 9999988752 79999999987642 22 4999
Q ss_pred EeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++-..-. .... -...+++.+++.|+|||.++..
T Consensus 184 I~D~~dp-~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 184 ITDSSDP-VGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCC-CCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 9653321 1111 1346799999999999999975
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=6.5e-08 Score=73.33 Aligned_cols=91 Identities=7% Similarity=-0.033 Sum_probs=68.5
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEecccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKWVL 134 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~~l 134 (244)
..+|||++||+|.++.+++.++.. + ++.+|. +..++.++++ .++.++.+|.++.+. ..|+|++.--.
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~-v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-G-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-e-eEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 479999999999999999988764 6 999999 8888877753 678999999765421 25999997664
Q ss_pred ccCCHHHHHHHHHHHHH--HcCCCCEEEE
Q 041308 135 TTWTDDECKLIMENYYK--ALLAGRKLIA 161 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~--~L~pgG~lii 161 (244)
..-. ..+++..+.+ .|+|+|.+++
T Consensus 122 ~~~~---~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 122 RRGL---LEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp STTT---HHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccch---HHHHHHHHHHCCCCCCCeEEEE
Confidence 4322 2345555554 5899988876
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=4.3e-08 Score=73.53 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=60.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC----C-CcceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS----I-HVVDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~----~-p~~D~v~ 129 (244)
.+.+.+|||+|||+|.++.+++++. .+ ++++|. +.+++.++++ .++....+|.+.. . ...|+|+
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~-vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--ch-hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE
Confidence 3556899999999999999988875 46 889999 9999888764 3333333332211 1 1259999
Q ss_pred eccccccCCHHHHHHHHHHHH--HHcCCCCEEEEe
Q 041308 130 MKWVLTTWTDDECKLIMENYY--KALLAGRKLIAC 162 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~ 162 (244)
+.--.+. ... +++.++. ..|+|||.+++-
T Consensus 116 ~DPPY~~-~~~---~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 116 MAPPYAM-DLA---ALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp ECCCTTS-CTT---HHHHHHHHHTCEEEEEEEEEE
T ss_pred Ecccccc-CHH---HHHHHHHHcCCcCCCeEEEEE
Confidence 8654332 222 2233332 469999988764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.32 E-value=1.6e-07 Score=73.46 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=75.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC----------c
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH----------V 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p----------~ 124 (244)
.++.+||++|+++|..+..+++..| +.+ ++.+|. +...+.|++. ++|+++.||..+.++ .
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~-v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcE-EEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 3579999999999999999999887 467 999998 8888777753 789999999865432 2
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++-. .. ......+..+.+.|+|||.+++=+..+
T Consensus 137 fD~iFiDa----~k-~~y~~~~e~~~~ll~~gGiii~DNvl~ 173 (227)
T d1susa1 137 YDFIFVDA----DK-DNYLNYHKRLIDLVKVGGVIGYDNTLW 173 (227)
T ss_dssp BSEEEECS----CS-TTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred eeEEEecc----ch-hhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence 49988753 12 224577888999999999998755543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=1.7e-06 Score=65.00 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=74.5
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-C--------C-
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-I--------H- 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~--------p- 123 (244)
++.+.++-+++..+|||+||++|.+++.+.+..+. .+ ++++|+..+ +..+++.++.+|+.+. . .
T Consensus 12 EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~-v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccce-EEEeecccc----cccCCceEeecccccchhhhhhhhhccC
Confidence 45566665678899999999999999999987554 56 999998333 3457889999999764 1 1
Q ss_pred -cceEEEeccccccCC----HH-----HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 -VVDAIFMKWVLTTWT----DD-----ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 -~~D~v~~~~~lh~~~----~~-----~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|++-.....-. |+ -+...+.-+.+.|+|||.+++-=.
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 149988765542211 11 123456677889999999998543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.27 E-value=1e-07 Score=72.21 Aligned_cols=93 Identities=9% Similarity=0.001 Sum_probs=69.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC-------cceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH-------VVDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p-------~~D~v 128 (244)
..+.+|||++||+|.++.+++.++.. + ++.+|. +.+++.++++ .++++..+|.++.+. ..|+|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~-~-v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMD-K-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEcccccccccceeeecchh-H-HHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 34689999999999999999998754 5 899999 8888887753 589999999865421 24999
Q ss_pred EeccccccCCHHHHHHHHHHHHH--HcCCCCEEEE
Q 041308 129 FMKWVLTTWTDDECKLIMENYYK--ALLAGRKLIA 161 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~--~L~pgG~lii 161 (244)
++.--.+. .....++..+.+ .|+|+|.+++
T Consensus 118 flDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 118 LLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp EECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred Eechhhhh---hHHHHHHHHHHHCCCCCCCEEEEE
Confidence 98755432 223456777755 5999997765
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.21 E-value=6.5e-07 Score=73.73 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-----CCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-----CFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~ 129 (244)
.++..+|||.|||+|.++..+.++. +..+ ++++|+ +.++..|+.. ....+..+|.+...+. .|+|+
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~-~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi 193 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVI 193 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccce-EEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Confidence 3556899999999999999987652 3445 899999 8888877642 5677788888766433 59999
Q ss_pred eccccccCCHHH----------------HHHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDDE----------------CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~~----------------~~~~l~~~~~~L~pgG~lii~d 163 (244)
+.--+......+ -..++.++.+.|+|||+++++-
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 886653222111 1236999999999999987754
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.16 E-value=1.4e-06 Score=65.67 Aligned_cols=109 Identities=24% Similarity=0.261 Sum_probs=80.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC--CCCeeEEeCCCCCC---CC--
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS--IPEVTHIGGDMFKS---IH-- 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~--~~~i~~~~gd~~~~---~p-- 123 (244)
+.+++++.+. ..++..++|+.+|.|..+..+++. +.+ ++++|. |.+++.+++ .+++.++.+++-+- ++
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~-viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCc-EEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 4566777776 677899999999999999999986 457 999999 999888765 37899999887542 11
Q ss_pred ---cceEEEecccc--ccCCH-----HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 ---VVDAIFMKWVL--TTWTD-----DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ---~~D~v~~~~~l--h~~~~-----~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|.|++-.-+ +++.+ ......|....+.|+|||+++++..
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 24777764322 11111 1234578889999999999999775
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=1.5e-06 Score=66.70 Aligned_cols=92 Identities=10% Similarity=-0.048 Sum_probs=71.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------CCCeeEEeCCCCCCCC--cceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------IPEVTHIGGDMFKSIH--VVDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~~~i~~~~gd~~~~~p--~~D~v~~~~~lh 135 (244)
+..+++|+|+|.|..+.-++-.+|+.+ ++.+|. ..=+...+. ..+++++.+...+..+ .+|+|+++.+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~-~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS-
T ss_pred cCCceeeeeccCCceeeehhhhcccce-EEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc-
Confidence 357999999999999999999999999 999995 322222221 2789999988876533 35999988663
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+ ...++.-+...++|+|++++.-
T Consensus 143 ---~--~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 ---S--LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---S--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---C--HHHHHHHHHHhcCCCcEEEEEC
Confidence 2 2478888889999999999865
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.10 E-value=6.3e-06 Score=64.31 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=67.9
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec-hHHHHhCC-CCCCeeEEeCCCCCC--CC--
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL-PEVVAKAP-SIPEVTHIGGDMFKS--IH-- 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-~~~i~~a~-~~~~i~~~~gd~~~~--~p-- 123 (244)
++++..+. +.+||+||++.|..+..+++. .++.+ ++++|+ +....... ...++++..||..+. +.
T Consensus 73 ~eli~~~K----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~k-I~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l 147 (232)
T d2bm8a1 73 HDMLWELR----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHL 147 (232)
T ss_dssp HHHHHHHC----CSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGG
T ss_pred HHHHHHhC----CCEEEEECCCCchHHHHHHHHHHhcCCCce-EEecCcChhhhhhhhccccceeeeecccccHHHHHHH
Confidence 34555443 589999999999877655533 35677 999998 55443332 238999999998654 22
Q ss_pred -c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 -V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 -~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|.|++-.. |+. ... ..-+ ++...|+|||++++-|.
T Consensus 148 ~~~~~dlIfID~~-H~~-~~v-~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 148 REMAHPLIFIDNA-HAN-TFN-IMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSSCSSEEEEESS-CSS-HHH-HHHH-HHHHTCCTTCEEEECSC
T ss_pred HhcCCCEEEEcCC-cch-HHH-HHHH-HHhcccCcCCEEEEEcC
Confidence 2 377776543 553 332 2334 46789999999998765
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.96 E-value=3.1e-05 Score=60.26 Aligned_cols=107 Identities=9% Similarity=-0.101 Sum_probs=67.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHH--HHhCCC-C--CCeeEEeCCCCCCCCc--c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEV--VAKAPS-I--PEVTHIGGDMFKSIHV--V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~--i~~a~~-~--~~i~~~~gd~~~~~p~--~ 125 (244)
..+.+.+- +++..+|+|+|||.|.++..++++.+... +.++++ -.. .....+ . .-+++..++....++. .
T Consensus 56 ~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~-V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 56 RWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVRE-VKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCc-eeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 34555664 78888999999999999999998765445 666665 111 011111 1 3456666655555443 4
Q ss_pred eEEEeccccccCC----HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 126 DAIFMKWVLTTWT----DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 126 D~v~~~~~lh~~~----~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
|+|++--.=+.-. ......+|.-+.+.|+|||.|++-
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 9988774322111 123346777888999999998873
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.7e-05 Score=63.48 Aligned_cols=91 Identities=16% Similarity=0.283 Sum_probs=65.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-------CCCeeEEeCCCCCC-C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-------IPEVTHIGGDMFKS-I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-------~~~i~~~~gd~~~~-~ 122 (244)
+++.+++..+ .++...|||||+|+|.++..++++.. + +++++. +.+++..++ ..+++++.+|+++. +
T Consensus 9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~-v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--c-EEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 4566777776 77789999999999999999999865 4 777887 776666543 16899999999886 6
Q ss_pred CcceEEEeccccccCCHHHHHHHHHHHHH
Q 041308 123 HVVDAIFMKWVLTTWTDDECKLIMENYYK 151 (244)
Q Consensus 123 p~~D~v~~~~~lh~~~~~~~~~~l~~~~~ 151 (244)
|..+.|+.+.-. +++ ..++.++..
T Consensus 85 ~~~~~vV~NLPY-~Is----s~il~~~~~ 108 (278)
T d1zq9a1 85 PFFDTCVANLPY-QIS----SPFVFKLLL 108 (278)
T ss_dssp CCCSEEEEECCG-GGH----HHHHHHHHH
T ss_pred hhhhhhhcchHH-HHH----HHHHHHHHh
Confidence 666666655443 233 345555544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=5.1e-06 Score=65.70 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=53.3
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS 121 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~ 121 (244)
+++.+++... .++...|||||||+|.++..|++... + ++++++ +.+++..++. ++++++.+|+++-
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~-v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--Q-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--C-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--c-eEEEEeccchhHHHHHHhhhccchhHHhhhhhhh
Confidence 4556777776 77789999999999999999998753 4 888888 8887766542 7899999999874
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.68 E-value=2.4e-05 Score=61.01 Aligned_cols=122 Identities=13% Similarity=0.016 Sum_probs=84.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC---C---CCCeeEEeCCCCC-----CCC-cceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP---S---IPEVTHIGGDMFK-----SIH-VVDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~---~---~~~i~~~~gd~~~-----~~p-~~D~v~ 129 (244)
++...+++|||+|.|.-++-++-..|+.+ ++.+|. ..-+...+ + ..++.++.+...+ +.. ..|+|+
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~-v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCcc-ceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEE
Confidence 44567999999999999999999999999 999996 43222222 1 2788887776532 122 259999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
++.+-. ...++.-+...+++||+++++-.- . +. -..++.+..+...
T Consensus 147 sRAva~------l~~ll~~~~~~l~~~g~~i~~KG~---~----~~---------------------~El~~a~~~~~~~ 192 (239)
T d1xdza_ 147 ARAVAR------LSVLSELCLPLVKKNGLFVALKAA---S----AE---------------------EELNAGKKAITTL 192 (239)
T ss_dssp EECCSC------HHHHHHHHGGGEEEEEEEEEEECC--------CH---------------------HHHHHHHHHHHHT
T ss_pred EhhhhC------HHHHHHHHhhhcccCCEEEEECCC---C----hH---------------------HHHHHHHHHHHHc
Confidence 986642 247889999999999999986531 0 00 0123445667788
Q ss_pred CCCeEEEEEc
Q 041308 210 GFPHLRAFIS 219 (244)
Q Consensus 210 Gf~~~~~~~~ 219 (244)
|++..++...
T Consensus 193 ~~~~~~v~~~ 202 (239)
T d1xdza_ 193 GGELENIHSF 202 (239)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 8888776554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.52 E-value=3.1e-05 Score=65.74 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=77.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-------------CCCeEEEeec-hHHHHhCCC--------CC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-------------FICEGINFDL-PEVVAKAPS--------IP 109 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~~D~-~~~i~~a~~--------~~ 109 (244)
+++.+++.++ .....+|+|-+||+|.++..+.+... ... ..++|. +.+...|+. ..
T Consensus 150 Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~-l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 150 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhh-hhhhhccHHHHHHHHhhhhhcCCccc
Confidence 4555666666 55678999999999999988876532 134 778888 766665552 24
Q ss_pred CeeEEeCCCCCCCCc--ceEEEeccccccCCH---------------HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 110 EVTHIGGDMFKSIHV--VDAIFMKWVLTTWTD---------------DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 110 ~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~~---------------~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
......+|.++..+. .|+|+++--+..-.. ..-..++.++.+.|+|||+++++=
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 567778888876443 599998866632110 112358999999999999988764
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.48 E-value=2.4e-05 Score=58.72 Aligned_cols=91 Identities=10% Similarity=0.005 Sum_probs=64.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC------CCcceEEEe
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS------IHVVDAIFM 130 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~------~p~~D~v~~ 130 (244)
..+|||+-||||.++.+.+.++.. + ++.+|. ...++..+++ ....+...|.++. .+..|+|++
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~-v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-K-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cceEeecccCccceeeeeeeecce-e-eEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 579999999999999999998754 5 899998 7666555532 3466666765432 122599998
Q ss_pred ccccccCCHHHHHHHHHHHHH--HcCCCCEEEE
Q 041308 131 KWVLTTWTDDECKLIMENYYK--ALLAGRKLIA 161 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~--~L~pgG~lii 161 (244)
---... ....+++..+.+ .|+++|.+++
T Consensus 122 DPPY~~---~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 122 DPPFHF---NLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp CCCSSS---CHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred chhHhh---hhHHHHHHHHHHhCCcCCCcEEEE
Confidence 766543 223456666654 6899887776
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=6.7e-05 Score=61.99 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=67.5
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-- 124 (244)
+.+.+..+ ..+..+|||+-||+|.++..|++... + ++++|. +..++.|+++ .++.|+.+|..+.++.
T Consensus 202 ~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~--~-V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~ 277 (358)
T d1uwva2 202 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAA--S-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 277 (358)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred HHHHHhhc-cCCCceEEEecccccccchhcccccc--E-EEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh
Confidence 33444444 56778999999999999999997653 4 999999 8898888753 7899999998765321
Q ss_pred -----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 125 -----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 125 -----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.|+|++.--=-.. .+.++.+.+ ++|.-.++|
T Consensus 278 ~~~~~~d~vilDPPR~G~-----~~~~~~l~~-~~~~~ivYV 313 (358)
T d1uwva2 278 WAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYV 313 (358)
T ss_dssp GGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEE
T ss_pred hhhccCceEEeCCCCccH-----HHHHHHHHH-cCCCEEEEE
Confidence 3888865333222 133455544 367555554
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.23 E-value=0.0058 Score=49.96 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=89.0
Q ss_pred CCcceEEEEcCCccHHHH-------HHHHH---------cCCCCeEEEeechH-----HHHhCCC---C-CC--eeEEeC
Q 041308 64 KGVKRLVDVGGSAGDCLR-------IILQK---------HCFICEGINFDLPE-----VVAKAPS---I-PE--VTHIGG 116 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~-------~l~~~---------~p~~~~~~~~D~~~-----~i~~a~~---~-~~--i~~~~g 116 (244)
++.-+|.|+||.+|.++. ...+. -|.++ +..-|+|. +...... . .+ +..+.|
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~q-vf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpG 128 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEE-EEeCCCCcchHHHHHHhccccccCCCCeEEEecCC
Confidence 344689999999998873 32221 24455 77778751 1111111 1 22 455779
Q ss_pred CCCCC-CCcc--eEEEeccccccCCH-------------------------------HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 117 DMFKS-IHVV--DAIFMKWVLTTWTD-------------------------------DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 117 d~~~~-~p~~--D~v~~~~~lh~~~~-------------------------------~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|... +|.. +++++...+|.++. .+...+|+.=++-|.|||++++.
T Consensus 129 SFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred chhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 99887 8875 99999999998752 12334777777889999999998
Q ss_pred cccCCCCCCch------HHhhhhhcccHhhhhh--------hccCceecCHHHHHHHHHhCC-CCeEEEE
Q 041308 163 EPVLPDDSNES------QRTRALLEGDIFVMTI--------YRAKGKHKTEQEFKQLGFSTG-FPHLRAF 217 (244)
Q Consensus 163 d~~~~~~~~~~------~~~~~~~~~d~~~~~~--------~~~~~~~~t~~e~~~ll~~aG-f~~~~~~ 217 (244)
-...++..... +......+.|+....+ ...---.++.+|+++.+++.| |.+.+.+
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence 76655431110 1111112222221110 001123358899999998755 5555544
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.09 E-value=0.0005 Score=55.21 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC---------CCCeeEEeCCCCCCCCc----------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS---------IPEVTHIGGDMFKSIHV---------- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~---------~~~i~~~~gd~~~~~p~---------- 124 (244)
.+...|+.+|||--.-+..+ ...++++ +.-+|.|.+++..++ ..+..++..|+.++++.
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~-~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~ 165 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 165 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCce-EEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence 45567888999988877665 2345677 888899988874432 24567788888765321
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.-+++...++.++++++..++|+.+.+...||+.+++-
T Consensus 166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 15788888999999999999999999999999998863
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.00 E-value=0.0013 Score=53.17 Aligned_cols=112 Identities=15% Similarity=0.061 Sum_probs=73.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC--CC-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS--IH-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~--~p-~ 124 (244)
.+..++ ..++.+|||+++|.|.=+..++.... ... +++.|. +.-+...+++ .++.+...|.... .. .
T Consensus 108 ~~~~l~-~~~g~~vlD~CAapGgKt~~l~~~~~~~~~-i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~ 185 (313)
T d1ixka_ 108 PPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE 185 (313)
T ss_dssp HHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred hhhccc-CCccceeeecccchhhhhHhhhhhcccccc-eeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 333444 56778999999999999888887755 456 889998 6666555432 5666666666443 12 2
Q ss_pred ceEEEeccc------c-------ccCCHH-------HHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 125 VDAIFMKWV------L-------TTWTDD-------ECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 125 ~D~v~~~~~------l-------h~~~~~-------~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+|.|++--- + ..+..+ ...++|+++.+.|||||+++-..+.+...
T Consensus 186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e 250 (313)
T d1ixka_ 186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE 250 (313)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH
Confidence 477775211 1 112222 12458899999999999999888766544
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.01 Score=47.91 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=80.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC---------------------------CCCeeEEeCCC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS---------------------------IPEVTHIGGDM 118 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~---------------------------~~~i~~~~gd~ 118 (244)
...|+-+|||.-...-.+...+|+++ +.-+|.|.+++.-++ .++..++..|+
T Consensus 97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~-~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 97 KVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCccchHHHHhhccCCCcE-EEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 46899999999999988988889888 888898887763321 15788899998
Q ss_pred CCC--CC---------c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 119 FKS--IH---------V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 119 ~~~--~p---------~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.+. +. . .-++++.-++..++++++.++++.+.+.. |.+.+++.|.+.+.
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~ 236 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGS 236 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCC
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCC
Confidence 763 11 1 25899999999999999999999999888 56788889988654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.85 E-value=0.002 Score=48.24 Aligned_cols=102 Identities=11% Similarity=-0.050 Sum_probs=67.1
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-CC---------Cc-ceEEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-SI---------HV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~~---------p~-~D~v~ 129 (244)
.+++.+||-+|||. |..+..+++.....+ ++++|. +..++.+++..--.++ |..+ ++ +. .|+++
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~-Vi~~d~~~~rl~~a~~~Ga~~~~--~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAV-VIVGDLNPARLAHAKAQGFEIAD--LSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCEEEE--TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccc-eeeecccchhhHhhhhccccEEE--eCCCcCHHHHHHHHhCCCCcEEEE
Confidence 78889999999997 767888887765556 899999 8888888875332222 2221 11 11 38777
Q ss_pred ecccc-------ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 130 MKWVL-------TTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 130 ~~~~l-------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
-.--. +..........++.+.++++|||+++++-...+
T Consensus 100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~ 144 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVT 144 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCS
T ss_pred ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCC
Confidence 43211 111111123679999999999999999865433
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00072 Score=58.60 Aligned_cols=109 Identities=10% Similarity=0.012 Sum_probs=70.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC----C--------------CCeEEEeec-hHHHHhCCCC----
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC----F--------------ICEGINFDL-PEVVAKAPSI---- 108 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~--------------~~~~~~~D~-~~~i~~a~~~---- 108 (244)
+++.+++.++ ..+..+|+|-.||+|.++..+.+... . .. ..++|. +.+...|+-+
T Consensus 152 Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 152 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTT
T ss_pred hhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhh-hhhhccCHHHHHHHHHHHHhh
Confidence 4555666665 45568999999999999988765421 1 14 688898 7666555421
Q ss_pred -------CCeeEEeCCCCCC----CCcceEEEeccccccC-------------CHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 109 -------PEVTHIGGDMFKS----IHVVDAIFMKWVLTTW-------------TDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 109 -------~~i~~~~gd~~~~----~p~~D~v~~~~~lh~~-------------~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
..-.+..+|.+.. .+..|+|+++--+..- ...+ ..++.++.+.|+|||++.++=
T Consensus 230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccccCcEEEEE
Confidence 1224455666543 2235999977654211 1112 358999999999999988864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.47 E-value=0.0049 Score=44.61 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred eEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHH
Q 041308 68 RLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 68 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
+|+=|||| .|.++..|.+.++..+ ++++|. +..++.+++...+.....+.... ....|+|++. .+.+...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~-I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~ 76 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 76 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeE-EEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-----CCchhhh
Confidence 57889998 4456778887777778 999999 88888887754444444333222 2235888865 5567788
Q ss_pred HHHHHHHHHcCCCCEEEEe
Q 041308 144 LIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii~ 162 (244)
.+++++...++++..++-+
T Consensus 77 ~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 77 EIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp HHHHHHHHHSCTTCEEEEC
T ss_pred hhhhhhhcccccccccccc
Confidence 8999999999998766543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.00098 Score=54.07 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=42.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---CCCeeEEeCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---IPEVTHIGGDMFK 120 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---~~~i~~~~gd~~~ 120 (244)
...+|||||+|.|.++..+++....-+ +++++. +...+..++ .++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~-v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 457899999999999999998742225 888887 666555442 3789999999873
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0045 Score=49.09 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=71.4
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc-ceE
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV-VDA 127 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~-~D~ 127 (244)
.++ ..++.+|||+++|.|.=+..+++...+.+ ++++|. +.-+...+++ ..+.....|.... .+. +|.
T Consensus 97 ~L~-~~~g~~vLD~CAaPGgKt~~la~l~~~~~-i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 97 WLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp HHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred ccC-ccccceeEeccCccccchhhhhhhhhhhh-hhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccE
Confidence 344 56678999999999999999998877777 999997 5544444321 3344444443322 122 487
Q ss_pred EEec------ccc-------ccCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 128 IFMK------WVL-------TTWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 128 v~~~------~~l-------h~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|++- -++ ..++..+ -.++|+++.+.|||||+++-..+.+...
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ 236 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE 236 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence 7742 112 1122111 2468999999999999999888766554
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0058 Score=48.63 Aligned_cols=110 Identities=11% Similarity=0.005 Sum_probs=70.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p- 123 (244)
.+..++ ..++.+|||+++|.|.=+.++++.. +..+ ++++|. +.-++..+++ .++.+...|+... .+
T Consensus 86 ~~~~L~-~~~g~~vLD~cAapGgKt~~la~l~~~~~~-i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~ 163 (293)
T d2b9ea1 86 PAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 163 (293)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred cccccC-CCccceEEecccchhhHHHHHHHHhcCCce-EeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccc
Confidence 333444 5667899999999999988888764 4556 899998 6666655532 6788888887543 22
Q ss_pred --cceEEEecccc-----------------------ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 --VVDAIFMKWVL-----------------------TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 --~~D~v~~~~~l-----------------------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
..|.|++---+ +.+..-| ..+++++. .|+|||+++-..+.+...
T Consensus 164 ~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q-~~il~~a~-~l~~gG~lvYsTCSl~~~ 232 (293)
T d2b9ea1 164 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ-QRALCHAL-TFPSLQRLVYSTCSLCQE 232 (293)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHH-HHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred cceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhh-HHhHHHhh-hcccccEEEEeeccCChh
Confidence 24777743211 0011112 34566665 479999888777655544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.84 E-value=0.0067 Score=43.70 Aligned_cols=91 Identities=7% Similarity=-0.010 Sum_probs=59.9
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC-------CcceEEEeccc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI-------HVVDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~-------p~~D~v~~~~~ 133 (244)
.++.++||=+|+| .|..+..+++.. +.+ ++++|. +.-++.+++..--.++..+-.+.. ...|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~-Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~ 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLH-VAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCc-cceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc
Confidence 6778899999987 677788888776 477 999999 888888877533333332211111 11244433222
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.. ..+..+.+.|+|||+++++-
T Consensus 103 ----~~----~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 103 ----SN----SAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp ----CH----HHHHHHHTTEEEEEEEEECC
T ss_pred ----cc----hHHHHHHHHhcCCcEEEEEE
Confidence 12 35788899999999999975
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0034 Score=45.58 Aligned_cols=97 Identities=14% Similarity=-0.018 Sum_probs=61.1
Q ss_pred cCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CCCCC---CCCc-ceEEEec
Q 041308 59 GYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GDMFK---SIHV-VDAIFMK 131 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~~---~~p~-~D~v~~~ 131 (244)
... .+++.+||-+|+| .|.++..+++.. +.+ ++++|. +.-++.+++..--.++. .+-.+ .... .|+++-.
T Consensus 22 ~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~-vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 22 RNG-CGPGKKVGIVGLGGIGSMGTLISKAM-GAE-TYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp HTT-CSTTCEEEEECCSHHHHHHHHHHHHH-TCE-EEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred HhC-cCCCCEEEEECCCCcchhHHHHhhhc-ccc-ccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 344 7788999999988 777888888764 678 999998 77777777642112222 11111 1222 3877643
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-.-.+ + ..+..+.+.|+|+|+++++-.
T Consensus 99 ~~~~~--~----~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 99 ASSLT--D----IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CSCST--T----CCTTTGGGGEEEEEEEEECCC
T ss_pred ecCCc--c----chHHHHHHHhhccceEEEecc
Confidence 22111 1 114567789999999999853
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.80 E-value=0.019 Score=41.63 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=64.0
Q ss_pred HhccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCc-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHV-V 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~-~ 125 (244)
+.+..+ .++.++||=+||| .|..+..+++....-+ +++.|. +.-++.+++..-..++..+-.+. .+. .
T Consensus 20 ~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~-v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 20 CINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASI-IIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp HHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSE-EEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred HHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccce-eeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence 455555 7888999999987 4556777877765445 778887 77777777653333433221111 112 3
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|+-. ... ...++.+.+.++|+|+++++-.
T Consensus 98 D~vid~-----~G~---~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 98 NFALES-----TGS---PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEEEC-----SCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEEc-----CCc---HHHHHHHHhcccCceEEEEEee
Confidence 776633 222 2567888999999999998754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.028 Score=40.93 Aligned_cols=96 Identities=16% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC-C--CCCC-------C-Cc-ceEE
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG-D--MFKS-------I-HV-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g-d--~~~~-------~-p~-~D~v 128 (244)
.+++.+||-+|+| .|.++..+++..---+ ++++|. +.-++.+++..--.++.. + ..+. . +. .|+|
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv 104 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAEN-VIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI 104 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECCCccchhheeccccccccc-ccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence 6778999999987 5888888888753225 899998 888888876532222221 1 1000 0 11 3877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+-.- ..+ ..++.+.+.|+|||+++++-...+
T Consensus 105 id~v-----G~~---~~~~~a~~~l~~~G~iv~~G~~~~ 135 (182)
T d1vj0a2 105 LEAT-----GDS---RALLEGSELLRRGGFYSVAGVAVP 135 (182)
T ss_dssp EECS-----SCT---THHHHHHHHEEEEEEEEECCCCSC
T ss_pred eecC-----Cch---hHHHHHHHHhcCCCEEEEEeecCC
Confidence 6331 111 357888899999999998875433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.51 E-value=0.038 Score=40.08 Aligned_cols=99 Identities=11% Similarity=-0.030 Sum_probs=66.0
Q ss_pred HhccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC---------Cc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI---------HV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~---------p~ 124 (244)
+++... .+++++||=+|||. |.++..+++....-+ +++.|. +.-++.+++..--.++...-.+.. +.
T Consensus 20 ~~~~a~-v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~-Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 20 AINTAK-VTPGSTCAVFGLGCVGLSAIIGCKIAGASR-IIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp HHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHhhC-CCCCCEEEEECCChHHHHHHHHHHHhCCce-eeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence 444444 78889999999986 888999998775445 888898 777788877533333321111111 11
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+++-.- ..+ ..+.+..+.++|| |+++++-.
T Consensus 98 G~d~vie~~-----G~~---~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 98 GVDYSLDCA-----GTA---QTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp CBSEEEESS-----CCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEec-----ccc---hHHHHHHHHhhcCCeEEEecCC
Confidence 38776332 222 5688999999996 99999754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.23 E-value=0.0069 Score=49.91 Aligned_cols=92 Identities=9% Similarity=-0.123 Sum_probs=67.7
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------------CCeeEEeCCCCCC--
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------------PEVTHIGGDMFKS-- 121 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------------~~i~~~~gd~~~~-- 121 (244)
..+|||..||+|..++..++..+.-+ ++..|+ +..++.++++ ..+.+...|....
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~-V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCE-EEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 57999999999999999888776556 999999 8888877753 1245556665322
Q ss_pred -CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 122 -IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 -~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
... .|+|.+--. ..+ ..+|..+.++++.||.|.+.-+
T Consensus 125 ~~~~~fDvIDiDPf----Gs~--~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDPF----GSP--MEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECCS----SCC--HHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCCC----CCc--HHHHHHHHHHhccCCEEEEEec
Confidence 222 498887652 222 3688999999999999999754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.11 E-value=0.028 Score=40.15 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=57.6
Q ss_pred eEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+| .+.++..+.+.. .+ +++.|. +..++.+++...+.... +..+.+..+|+|++. .++....+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g--~~-V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIila-----vp~~~~~~ 72 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRG--HY-LIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLC-----TPIQLILP 72 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CE-EEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEEC-----SCHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHCC--CE-EEEEECCchHHHHHHHhhccceee-eeccccccccccccc-----CcHhhhhh
Confidence 46667887 444666666543 45 899999 88887776644343322 222334557998864 56777889
Q ss_pred HHHHHHHHcCCCCEEEEe
Q 041308 145 IMENYYKALLAGRKLIAC 162 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii~ 162 (244)
+++++...|+|+-.++-.
T Consensus 73 vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 73 TLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhhcccccceeec
Confidence 999999999888766544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.061 Score=38.54 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=61.9
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC----------CCc-ceEEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS----------IHV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~----------~p~-~D~v~ 129 (244)
.++..+||=+|+|+ |.++..+++....-+ ++++|. +.-++.+++..--.+...+-... .+. +|+|+
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~-Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQ-VVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCce-EEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 67789999999974 556666776654336 999998 88888887752222222221111 011 37776
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
-.- ..+ ..++.+.+.++|||++++.-...
T Consensus 103 d~~-----G~~---~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 103 ECT-----GAE---ASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp ECS-----CCH---HHHHHHHHHSCTTCEEEECSCCC
T ss_pred ecc-----CCc---hhHHHHHHHhcCCCEEEEEecCC
Confidence 432 222 56888999999999999987543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.90 E-value=0.019 Score=41.36 Aligned_cols=98 Identities=21% Similarity=0.120 Sum_probs=62.8
Q ss_pred ccCCCCCCcceEEEEcC-C-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--------CCc-c
Q 041308 58 DGYDGFKGVKRLVDVGG-S-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--------IHV-V 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~-G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--------~p~-~ 125 (244)
+..+ .++..+||=+|| | .|..+..+++.....+ ++++|. +.-++.+++..--.++..+-.+. .+. .
T Consensus 21 ~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~-V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 21 RKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp HHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCE-EEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred HHhC-CCCCCEEEEEeccccceeeeeeccccccccc-ccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 4455 778899999996 3 6677777887765556 899998 77777776542112333222111 112 3
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+++-... . ...++.+.+.++|||+++++-..
T Consensus 99 d~vid~~g-----~---~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 99 DAVIDLNN-----S---EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEEESCC-----C---HHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhhcccc-----c---chHHHhhhhhcccCCEEEEeccc
Confidence 77764322 2 25577888999999999998543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.85 E-value=0.082 Score=37.67 Aligned_cols=93 Identities=9% Similarity=-0.061 Sum_probs=62.7
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCC-----------Cc-ceE
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSI-----------HV-VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~-----------p~-~D~ 127 (244)
.++..+||-+||| .|.++..+++.. +.+ ++++|. +.-++.+++. ....+..-+..++. +. +|+
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~-vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~ 101 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 101 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-ccc-ccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCce
Confidence 6778999999988 677888888765 568 999998 8888888765 22233221111111 12 377
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+-.- ..+ ..+..+.+.++|||+++++-..
T Consensus 102 vid~~-----g~~---~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 102 TIDCS-----GNE---KCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EEECS-----CCH---HHHHHHHHHSCTTCEEEECSCC
T ss_pred eeecC-----CCh---HHHHHHHHHHhcCCceEEEecC
Confidence 76332 222 5678888999999999998643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.38 E-value=0.11 Score=37.21 Aligned_cols=93 Identities=14% Similarity=-0.016 Sum_probs=60.0
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC--CCC----C-Cc-ceEEEecc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM--FKS----I-HV-VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~--~~~----~-p~-~D~v~~~~ 132 (244)
.++..+||=+|+| .|..+..+++.....+ ++++|. +.-++.+++.....++..+- .+. . +. .|+|+-..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~-vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPAT-VIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCE-EEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcc-cccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 4667899999987 4556677777654456 888898 77777777654334443221 010 0 12 37666332
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .. ..+....+.|+|||+++++-.
T Consensus 109 g-----~~---~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 109 G-----SQ---ATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp C-----CH---HHHHHGGGGEEEEEEEEECCC
T ss_pred C-----cc---hHHHHHHHHHhCCCEEEEEeC
Confidence 2 22 457888999999999999753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.14 E-value=0.017 Score=42.05 Aligned_cols=94 Identities=14% Similarity=-0.038 Sum_probs=62.0
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCC----CC-c-ceEEEec
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKS----IH-V-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~----~p-~-~D~v~~~ 131 (244)
.++..+||=+|||. |..+..+++..---+ ++++|. +.-++.+++..-..++.- +..+. .. . .|+|+-.
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~-Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGR-IIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSC-EEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccc-cccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc
Confidence 67889999999985 888888888653336 899998 777887776432222211 11111 11 1 3877643
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
-- .+ ..++++.+.++|+|+++++-..
T Consensus 104 ~g-----~~---~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 104 GG-----GS---ETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp SS-----CT---THHHHHHHHEEEEEEEEECCCC
T ss_pred cC-----CH---HHHHHHHHHHhcCCEEEEEeec
Confidence 22 11 4568888999999999997653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.56 E-value=0.13 Score=36.30 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=57.8
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-CC--------CcceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-SI--------HVVDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~~--------p~~D~v~~~ 131 (244)
.++.++||=.|+| .|..+..+++. ...+ ++++|. +.-++.+++..--.++. ..+ +. +..|.++..
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~-v~~~~~~~~r~~~~k~~Ga~~~~~--~~~~~~~~~~~~~~~~~~~~v~~ 100 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLN-VVAVDIGDEKLELAKELGADLVVN--PLKEDAAKFMKEKVGGVHAAVVT 100 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCE-EEEECSCHHHHHHHHHTTCSEEEC--TTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCe-EeccCCCHHHhhhhhhcCcceecc--cccchhhhhcccccCCCceEEee
Confidence 6778999999987 45566666665 4557 899997 77777777643222221 211 11 113444433
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.. .. ..+....+.|+|||+++++-.
T Consensus 101 ~~----~~----~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 101 AV----SK----PAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SC----CH----HHHHHHHHHEEEEEEEEECCC
T ss_pred cC----CH----HHHHHHHHHhccCCceEeccc
Confidence 22 22 457899999999999999754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.051 Score=38.89 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=60.3
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---C---CcceEEE
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---I---HVVDAIF 129 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---~---p~~D~v~ 129 (244)
+..+ .+++.+||=+|+| .|.++..+++.. +.+ .+++|. +.-.+.+++...-.++. ..++ . ...|+++
T Consensus 24 ~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~-~i~~~~~~~~~~~a~~lGad~~i~--~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 24 RHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAH-VVAFTTSEAKREAAKALGADEVVN--SRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESSGGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEE
T ss_pred HHhC-CCCCCEEEEeccchHHHHHHHHhhcc-ccc-chhhccchhHHHHHhccCCcEEEE--CchhhHHHHhcCCCceee
Confidence 3444 7888999999987 577888888875 567 777887 66666666542223332 2221 1 1148776
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-.-. .+ ..++...+.++|||+++++-.
T Consensus 99 d~~g-----~~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 99 NTVA-----AP---HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ECCS-----SC---CCHHHHHTTEEEEEEEEECCC
T ss_pred eeee-----cc---hhHHHHHHHHhcCCEEEEecc
Confidence 4422 11 235677889999999999754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.85 E-value=0.18 Score=34.30 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=54.5
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEeccccccC
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTTW 137 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~~ 137 (244)
+|+=+|+ |.+++.+++.. .+.. ++++|. ++.++.+++.-.+.++.||..++ + ..+|+++.. .
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t 73 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHD-IVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----T 73 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----C
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCC-cceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----C
Confidence 4566665 66666666654 2456 999998 88877665434678899999765 2 225777753 2
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~li 160 (244)
++++.-.+.....+.+.+...++
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEE
T ss_pred CcHHHHHHHHHHHHHcCCceEEE
Confidence 33444445666777788875444
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.77 E-value=0.13 Score=34.92 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=54.6
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEeccccccCCH
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~~~~ 139 (244)
+++=+ |-|..+..+++...+-. ++++|. +...+..+. ..+.++.||..++ + ..++.+++.. -+|
T Consensus 2 HivI~--G~g~~g~~l~~~L~~~~-i~vi~~d~~~~~~~~~-~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----~~d 73 (129)
T d2fy8a1 2 HVVIC--GWSESTLECLRELRGSE-VFVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVNL----ESD 73 (129)
T ss_dssp CEEEE--SCCHHHHHHHHTSCGGG-EEEEESCTTHHHHHHH-TTCEEEESCTTSHHHHHHTTCTTCSEEEECC----SSH
T ss_pred EEEEE--CCCHHHHHHHHHHcCCC-CEEEEcchHHHHHHHh-cCccccccccCCHHHHHHhhhhcCcEEEEec----cch
Confidence 34444 55778888888876656 888888 776666543 5788999999765 2 2356666431 123
Q ss_pred HHHHHHHHHHHHHcCCCCEEEE
Q 041308 140 DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+. ..+....+.+.|..+++.
T Consensus 74 ~~n-~~~~~~~r~~~~~~~iia 94 (129)
T d2fy8a1 74 SET-IHCILGIRKIDESVRIIA 94 (129)
T ss_dssp HHH-HHHHHHHHHHCSSSCEEE
T ss_pred hhh-HHHHHHHHHHCCCceEEE
Confidence 333 334455667888876665
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.63 E-value=0.5 Score=31.81 Aligned_cols=85 Identities=9% Similarity=0.021 Sum_probs=48.9
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEeccccccC
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTTW 137 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~~ 137 (244)
+++=+|+ |.++..+++.. -+.. ++++|. ++.++.++.. ...++.||..++ + ..+|.+++. .
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~-----~ 72 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVA-----I 72 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCC-CEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEEC-----C
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCe-EEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEE-----c
Confidence 3455555 55555555543 2445 899999 8888888764 446677898765 2 224766644 2
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++...++-...+.+.|..+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 73 GANIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CchHHhHHHHHHHHHHcCCCcEEe
Confidence 222222333344444556667665
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.55 E-value=0.49 Score=33.72 Aligned_cols=101 Identities=10% Similarity=-0.110 Sum_probs=63.1
Q ss_pred HhccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCC-CC-----CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMF-KS-----IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~-~~-----~p~ 124 (244)
+.+... .++.++||=+||| .|..+..+++.....+ ++++|. +.-++.+++..-..++. .|.. +. .+.
T Consensus 19 ~~~~a~-~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~-Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 19 AVNTAK-VTPGSTCAVFGLGGVGFSAIVGCKAAGASR-IIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp HHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCce-eeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 344444 7888999999987 5556777787765556 999998 88888888764333332 2211 00 112
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCC-CCEEEEecccC
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLA-GRKLIACEPVL 166 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~p-gG~lii~d~~~ 166 (244)
.|+++-.-. . ...+.+....+++ +|+++++-...
T Consensus 97 G~d~vid~~g-----~---~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 97 GVDYAVECAG-----R---IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp CBSEEEECSC-----C---HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred CCcEEEEcCC-----C---chHHHHHHHHHHHhcCceEEEEEec
Confidence 377664322 1 2456667777765 59999877543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=91.50 E-value=0.019 Score=41.51 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=60.5
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCC--C-CCCcceEEEeccccccC
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMF--K-SIHVVDAIFMKWVLTTW 137 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~--~-~~p~~D~v~~~~~lh~~ 137 (244)
++.+|+=+|+| .|..+...++.. ... ++++|. +..++..+.. .+++....+-. + .+..+|+|+..-.+--=
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~-V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQ-VQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCE-EEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 46899999999 577788888775 467 999998 7777655532 44555443221 1 13446999877554322
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..+ .-+=++..+.+|||..++=
T Consensus 109 ~aP--~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 109 RAP--ILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp SCC--CCBCHHHHTTSCTTCEEEE
T ss_pred ccC--eeecHHHHhhcCCCcEEEE
Confidence 222 1234778889999997654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.37 Score=34.25 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=61.6
Q ss_pred HhccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCCC-----Cc
Q 041308 56 VLDGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKSI-----HV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~~-----p~ 124 (244)
+.+..+ +++..+||-.|+ |.|..+..+++.. +++ +++++. ++-.+.+++..--.++. .|+.+.+ +.
T Consensus 20 l~~~~~-~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~-vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 20 LIHSAC-VKAGESVLVHGASGGVGLAACQIARAY-GLK-ILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp HHTTSC-CCTTCEEEEETCSSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTT
T ss_pred HHHHhC-CCCCCEEEEEecccccccccccccccc-Ccc-cccccccccccccccccCcccccccccccHHHHhhhhhccC
Confidence 444445 778899999995 5788888888775 567 887776 66667766542222221 1111111 12
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|+-. ... ..+.+..++|+|+|+++.+-
T Consensus 97 g~d~v~d~-----~g~----~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 97 GIDIIIEM-----LAN----VNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CEEEEEES-----CHH----HHHHHHHHHEEEEEEEEECC
T ss_pred CceEEeec-----ccH----HHHHHHHhccCCCCEEEEEe
Confidence 2777643 121 35788889999999999874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.04 E-value=0.58 Score=33.01 Aligned_cols=99 Identities=15% Similarity=0.042 Sum_probs=61.7
Q ss_pred HhccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCC--------CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKS--------IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~--------~p~ 124 (244)
+.+..+ .+++++||=+||| .|.++..+++..-..+ +++.|. +.-.+.+++..--.++.. +-.+. .+.
T Consensus 20 l~~~~~-~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~-vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 20 AVNTAK-LEPGSVCAVFGLGGVGLAVIMGCKVAGASR-IIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp HHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSE-EEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHhhC-CCCCCEEEEecchhHHHHHHHHHHHHhcCc-eEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCC
Confidence 444455 7888999999876 5667777887765445 888887 777777776432233221 11111 122
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|+-.- ..+ ..++.+...+++||.++++-.
T Consensus 98 g~D~vid~~-----G~~---~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 98 GVDYSFECI-----GNV---KVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp CBSEEEECS-----CCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred CCcEeeecC-----CCH---HHHHHHHHhhcCCceeEEEEe
Confidence 38777442 222 567888999999988776543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.82 E-value=1.9 Score=30.28 Aligned_cols=99 Identities=14% Similarity=-0.019 Sum_probs=60.0
Q ss_pred HhccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CCCCCCC--------Cc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GDMFKSI--------HV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~~~~--------p~ 124 (244)
+.+.-. .+++.+||=+|+|. |..+..+++..-..+ ++++|. +.-.+.+++.....++. .+-.+.. +.
T Consensus 20 l~~~~~-vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~-Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 20 AVKVAK-VTQGSTCAVFGLGGVGLSVIMGCKAAGAAR-IIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp HHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHhhC-CCCCCEEEEECCCCcHHHHHHHHHHcCCce-EEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 444444 78889999999864 445666666665556 999998 87777777654333332 1111111 11
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+++-.... + ..++.+...+++| |.+++.-.
T Consensus 98 G~D~vid~~G~-----~---~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 98 GVDFSFEVIGR-----L---DTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp CBSEEEECSCC-----H---HHHHHHHHHBCTTTCEEEECSC
T ss_pred CCCEEEecCCc-----h---hHHHHHHHHHhcCCcceEEecC
Confidence 3877754332 2 3467777788886 55555443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=88.72 E-value=0.22 Score=38.14 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=53.0
Q ss_pred HhccCCCCCCc--ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-------CC--------CCeeEEeCC
Q 041308 56 VLDGYDGFKGV--KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-------SI--------PEVTHIGGD 117 (244)
Q Consensus 56 l~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-------~~--------~~i~~~~gd 117 (244)
+.+... +++. .+|||.-||.|.-+..++..+ .+ ++.++. |.+....+ .. .|++++.+|
T Consensus 78 l~kA~g-l~~~~~~~VlD~TaGlG~Da~vlA~~G--~~-V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASVG--CR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHHT--CC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHhc-CCCCCCCEEEECCCcccHHHHHHHhCC--CE-EEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 555554 4433 489999999999999999875 46 999997 54332221 11 489999999
Q ss_pred CCCCC---C-cceEEEecccccc
Q 041308 118 MFKSI---H-VVDAIFMKWVLTT 136 (244)
Q Consensus 118 ~~~~~---p-~~D~v~~~~~lh~ 136 (244)
..+.+ . ..|+|++--++.+
T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhccCCCCCEEEECCCCcc
Confidence 75432 2 2499998777644
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=88.28 E-value=0.22 Score=40.33 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-------CCCeEEEeec-hHHH
Q 041308 35 PKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-------FICEGINFDL-PEVV 102 (244)
Q Consensus 35 ~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-------~~~~~~~~D~-~~~i 102 (244)
|++...|-+..+.+ +..+.+.+. -++..+|+|+|+|+|.++..+++... .++ +..++. +...
T Consensus 54 p~is~~Fg~~ia~~----~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~-~~~vE~s~~L~ 123 (365)
T d1zkda1 54 PEISQMFGELLGLW----SASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEINPVLR 123 (365)
T ss_dssp HHHCHHHHHHHHHH----HHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECCCHHHH
T ss_pred CchHHHHHHHHHHH----HHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccce-EEEeccchhHH
Confidence 44445555555432 122333343 34557899999999999998877532 234 677787 5433
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.76 E-value=1.7 Score=30.44 Aligned_cols=96 Identities=15% Similarity=0.022 Sum_probs=56.1
Q ss_pred HhccCCCCCCcceEEEEcCCccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC---------Cc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI---------HV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~---------p~ 124 (244)
+.+... .++.++||=+|+|.+. .+..+++..-..+ ++++|. ++-++.+++..--+++..+-.+.. +.
T Consensus 20 ~~~~a~-~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~-Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 20 AVNTAK-VEPGSTCAVFGLGAVGLAAVMGCHSAGAKR-IIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp HHTTTC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHhhC-CCCCCEEEEEecCCccchHHHHHHHHhhch-heeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccC
Confidence 444444 7888999999998754 4555555554456 899998 877888887643333321111111 11
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.|+++-.-. .. ..+..+.+.+++||.+++
T Consensus 98 G~d~vid~~G-----~~---~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 98 GVDFSLECVG-----NV---GVMRNALESCLKGWGVSV 127 (175)
T ss_dssp CBSEEEECSC-----CH---HHHHHHHHTBCTTTCEEE
T ss_pred CcceeeeecC-----CH---HHHHHHHHHhhCCCccee
Confidence 377764322 12 446677777777644444
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.51 E-value=0.71 Score=29.51 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=43.5
Q ss_pred CCCcceEEEEc-CCccHHHH--HHHHHcCCCCeEEEeec--hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEecccc
Q 041308 63 FKGVKRLVDVG-GSAGDCLR--IILQKHCFICEGINFDL--PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 63 ~~~~~~vLDvG-~G~G~~~~--~l~~~~p~~~~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
.+...+|.=|| ||+|..+. .+.++ +.+ +++-|. ....+...+ ..+.+..+...+.++..|+|+.+..+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~--G~~-VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI 77 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE--GYQ-ISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAI 77 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH--TCE-EEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTS
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC--CCE-EEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCc
Confidence 45667888888 67887654 44444 446 888896 334343333 46677666554446667999888775
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.36 E-value=1.3 Score=31.34 Aligned_cols=96 Identities=10% Similarity=-0.030 Sum_probs=59.8
Q ss_pred HhccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCCC----C-c
Q 041308 56 VLDGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKSI----H-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~~----p-~ 124 (244)
+.+... +++..+||=.|+ |.|..+..+++.. +.+ +++.+. ++-.+.+++..--.++.. |+.+.+ . .
T Consensus 17 l~~~~~-~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~-vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 17 LCEVGR-LSPGERVLIHSATGGVGMAAVSIAKMI-GAR-IYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGY 93 (183)
T ss_dssp HHTTSC-CCTTCEEEETTTTSHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTC
T ss_pred HHHHhC-CCCCCEEEEECCCCCcccccchhhccc-ccc-ceeeecccccccccccccccccccCCccCHHHHHHHHhCCC
Confidence 445445 777899998873 5788888888775 466 666665 666677776522222221 111111 1 2
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|+-... . ..++.+.++|+|+|+++.+-
T Consensus 94 g~d~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 94 GVDVVLNSLA-----G----EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CEEEEEECCC-----T----HHHHHHHHTEEEEEEEEECS
T ss_pred CEEEEEeccc-----c----hHHHHHHHHhcCCCEEEEEc
Confidence 387774322 2 34677889999999999863
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.74 E-value=2.3 Score=30.01 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=61.6
Q ss_pred HhccCCCCCCcceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--------CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--------IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--------~p~ 124 (244)
+.+..+ ++++++||=.|++ .|..+..+++.. ..+ +++++. ++-.+.+++..--.++..+-... -+.
T Consensus 21 l~~~~~-v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~-vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 21 LLEVCG-VKGGETVLVSAAAGAVGSVVGQIAKLK-GCK-VVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp HHTTTC-CCSSCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTT
T ss_pred HHHHhC-CCCCCEEEEEeCCCchhHHHHHHHHcc-CCE-EEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcC
Confidence 445555 7888999988874 567888888876 568 888886 66666666543223332211111 112
Q ss_pred c-eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 V-DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~-D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+ |+|+= +... +.++...++|+|||+++++-
T Consensus 98 Gvd~v~D-----~vG~----~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 98 GYDCYFD-----NVGG----EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CEEEEEE-----SSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred CCceeEE-----ecCc----hhhhhhhhhccCCCeEEeec
Confidence 2 77662 2332 35788999999999999874
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=83.61 E-value=0.41 Score=33.97 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=50.4
Q ss_pred ceEEEEcCCccHH--HHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEE------eCCCCCCCCcceEEEe
Q 041308 67 KRLVDVGGSAGDC--LRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHI------GGDMFKSIHVVDAIFM 130 (244)
Q Consensus 67 ~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~------~gd~~~~~p~~D~v~~ 130 (244)
.+|-=||+|.-.. +..|.+. +.+ ++++|. +.-++..++. +..... ..|..+.++.+|+|++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQS-VLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence 4677789885443 3344443 346 888998 6666655432 111111 1111111344688886
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
. .+......+++++...|+++-.+++
T Consensus 79 ~-----v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 79 V-----VPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp C-----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred E-----EchhHHHHHHHHhhhccCCCCEEEE
Confidence 5 2344456889999999999876654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.14 E-value=0.53 Score=36.91 Aligned_cols=124 Identities=15% Similarity=0.052 Sum_probs=73.4
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CC--cceEEEeccccccC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IH--VVDAIFMKWVLTTW 137 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p--~~D~v~~~~~lh~~ 137 (244)
+.+|+|+-||.|.+...+.+.+-+.+-+..+|. +..++.-+.+ +...+..+|+.+- ++ ..|+++...-+..+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 468999999999999998776544341346687 7777665553 5667777887543 22 23999877776555
Q ss_pred CH--------HHHHHHHHHHHHHc-----CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 138 TD--------DECKLIMENYYKAL-----LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 138 ~~--------~~~~~~l~~~~~~L-----~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
+- ++.-.++-++.+.+ || +++++|.+..-.. ..+.+.+.+
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~l~~-------------------------~~~~~~i~~ 134 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFEV-------------------------SSTRDLLIQ 134 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGGG-------------------------SHHHHHHHH
T ss_pred cccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCCccc-------------------------chhhHHHHh
Confidence 52 22334555555554 35 5666776542110 011356677
Q ss_pred HHHhCCCCeEEE
Q 041308 205 LGFSTGFPHLRA 216 (244)
Q Consensus 205 ll~~aGf~~~~~ 216 (244)
.|++.|+.+...
T Consensus 135 ~l~~~GY~v~~~ 146 (343)
T d1g55a_ 135 TIENCGFQYQEF 146 (343)
T ss_dssp HHHHTTEEEEEE
T ss_pred hhhcccccccee
Confidence 888999876553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.27 E-value=0.93 Score=32.38 Aligned_cols=96 Identities=9% Similarity=-0.078 Sum_probs=57.1
Q ss_pred CCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe--CCCCCC----CCcc-eEEEecc
Q 041308 63 FKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG--GDMFKS----IHVV-DAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~--gd~~~~----~p~~-D~v~~~~ 132 (244)
.+++.+||=.| +|.|.+++.+++.. +.+ +++..- ++-.+.+++..--.++. .+..+. -+.. |+|+=.
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~-Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~- 105 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYT-VEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP- 105 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCC-EEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC-
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCc-eEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEc-
Confidence 55678999998 46788999999875 667 766655 55555555431111111 111111 1223 866532
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+- . ..+.+..+.|+|||+++++-...+..
T Consensus 106 vg----g----~~~~~~l~~l~~~Griv~~G~~~g~~ 134 (176)
T d1xa0a2 106 VG----G----RTLATVLSRMRYGGAVAVSGLTGGAE 134 (176)
T ss_dssp ST----T----TTHHHHHHTEEEEEEEEECSCCSSSC
T ss_pred CC----c----hhHHHHHHHhCCCceEEEeecccCcc
Confidence 21 1 23678889999999999987764443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=82.16 E-value=0.35 Score=37.50 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=40.9
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
+++.+++.+. .++..|||.=||+|..+.+..+.. -+ ++++|+ +..++.+++
T Consensus 239 L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~lg--R~-~Ig~El~~~y~~~a~~ 290 (320)
T d1booa_ 239 LPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERES--RK-WISFEMKPEYVAASAF 290 (320)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHG
T ss_pred HHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHcC--Cc-EEEEeCCHHHHHHHHH
Confidence 4566666654 466899999999999999988764 34 999999 899988875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.07 E-value=1.6 Score=30.71 Aligned_cols=100 Identities=9% Similarity=-0.047 Sum_probs=61.9
Q ss_pred HhccCCCCCCcceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCCC-----Cc
Q 041308 56 VLDGYDGFKGVKRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKSI-----HV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~~-----p~ 124 (244)
+.+..+ .++..+||=.|+| .|..+..+++.. +.+ +++.+. +.-.+.+++..--.++. .|+.+.+ +.
T Consensus 20 l~~~~~-l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~-Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 20 LRKTYE-IKPDEQFLFHAAAGGVGLIACQWAKAL-GAK-LIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp HHTTSC-CCTTCEEEESSTTBHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTC
T ss_pred HHHHhC-CCCCCEEEEEccccccchHHHHHHHHh-CCe-EeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCC
Confidence 444455 7788999999765 677888898874 567 888887 76666666543222332 1211111 12
Q ss_pred c-eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 125 V-DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 125 ~-D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
. |+|+-.- .. ..+....+.++|+|++++.-....
T Consensus 97 g~d~v~d~~-----g~----~~~~~~~~~l~~~G~~v~~g~~~~ 131 (179)
T d1qora2 97 KVRVVYDSV-----GR----DTWERSLDCLQRRGLMVSFGNSSG 131 (179)
T ss_dssp CEEEEEECS-----CG----GGHHHHHHTEEEEEEEEECCCTTC
T ss_pred CeEEEEeCc-----cH----HHHHHHHHHHhcCCeeeecccccC
Confidence 2 6655322 22 235778889999999988654433
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.93 E-value=1.7 Score=29.75 Aligned_cols=87 Identities=15% Similarity=0.016 Sum_probs=49.4
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHH----HHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEV----VAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKW 132 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~----i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~ 132 (244)
.+|+=+|+| .++..+++.. .+.. ++++|. ++. ++... ...+.++.||..++ +. .+|++++..
T Consensus 4 nHiII~G~g--~~g~~l~~~L~~~~~~-v~vId~d~~~~~~~~~~~~-~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 4 DHFIVCGHS--ILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp SCEEEECCS--HHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCCC-EEEEeccchhHHHHHHHhh-cCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 467778875 4444444432 2445 777876 432 22222 26789999999776 32 257776542
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
. .|... .......+.+.|.-+++..
T Consensus 80 --~--~d~~n-~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 80 --D--NDADN-AFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp --S--CHHHH-HHHHHHHHHHTSSSCEEEE
T ss_pred --c--cHHHH-HHHHHHHHHhCCCCceEEE
Confidence 1 23333 3344556667787776653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=80.84 E-value=1.5 Score=27.41 Aligned_cols=66 Identities=11% Similarity=-0.068 Sum_probs=41.0
Q ss_pred eEEEEc-CCccHHHHHHHHHcCCCCeEEEeec--hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccc
Q 041308 68 RLVDVG-GSAGDCLRIILQKHCFICEGINFDL--PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 68 ~vLDvG-~G~G~~~~~l~~~~p~~~~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh 135 (244)
+|-=|| ||+|..+.+..-..-+.. +++-|. +++.+..++ ..+++..+.-.+.+..+|+|+.+..+-
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD~~~~~~t~~L~~-~Gi~i~~gh~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGND-VYGSNIEETERTAYLRK-LGIPIFVPHSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHH-TTCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCe-EEEEeCCCChhHHHHHH-CCCeEEeeecccccCCCCEEEEecCcC
Confidence 445566 778886655444444567 999998 355554433 446666553333366679999887764
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.56 E-value=6.5 Score=26.71 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=52.7
Q ss_pred CcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHH-------HHhCCCC--CCeeEEeCCCCCCCCcceEEEeccc
Q 041308 65 GVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEV-------VAKAPSI--PEVTHIGGDMFKSIHVVDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~-------i~~a~~~--~~i~~~~gd~~~~~p~~D~v~~~~~ 133 (244)
+..+|-=||+|. |......+...+-..++..+|. +.. +.++... ..+.+..+|+ +.+..+|+|++...
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-~~l~daDvvvitag 83 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-DDCRDADLVVICAG 83 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-GGTTTCSEEEECCS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-HHhccceeEEEecc
Confidence 457899999863 5443333333333333888998 554 3333221 4456666665 44666799887544
Q ss_pred cccCCH-------HHHHHHHHHHHHHc---CCCCEEEEec
Q 041308 134 LTTWTD-------DECKLIMENYYKAL---LAGRKLIACE 163 (244)
Q Consensus 134 lh~~~~-------~~~~~~l~~~~~~L---~pgG~lii~d 163 (244)
...-+. ....++++++.+.+ .|.+.++++.
T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 422211 11233444443333 4889888854
|