Citrus Sinensis ID: 041310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHEEEccccccEEcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYvlerkhrpklSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVkitsgrggakvLGTIVCIGGSLIFTFWKRgcllkgfvqkplihiydtdqlrhhgnenwfKGSALILTSHISWSAWLILLATVskdypaplsLNALICFFASLQSSFVALFlgrnptlwkldwnvqLLTIVYC
Flexible Loop (DISEMBL)
MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITsgrggakvLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPtlwkldwnvqLLTIVYC
Low Complexity Region (SEG)
MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC
Disordered region (IsUnstruct)
****SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVY*
Disordered Region (DISOPRED)
**AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKP*****************WFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC
Disordered Region (DISEMBL)
MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC
Disordered Region (DISPRO)
*EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFV******************ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
O80638	374	WAT1-related protein At2g	yes	no	0.984	0.668	0.377	1e-45
Q9FL41	402	WAT1-related protein At5g	no	no	0.968	0.611	0.376	2e-45
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.956	0.639	0.359	3e-44
Q9FGG3	359	WAT1-related protein At5g	no	no	0.980	0.693	0.391	2e-43
Q9SUF1	384	WAT1-related protein At4g	no	no	0.972	0.643	0.375	2e-43
Q9LXX8	377	WAT1-related protein At3g	no	no	0.952	0.641	0.345	9e-43
F4IJ08	394	WAT1-related protein At2g	no	no	0.952	0.614	0.342	3e-41
Q8GXB4	374	WAT1-related protein At1g	no	no	0.964	0.655	0.337	5e-40
Q6NMB7	343	WAT1-related protein At1g	no	no	0.960	0.711	0.372	8e-40
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.976	0.637	0.351	3e-39

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/254 (37%), Positives = 152/254 (59%), Gaps = 4/254 (1%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           ++ + P++ ++ +QF Y G +I+ K +L +G++  V   YRH++A + + PFAY L+RK 
Sbjct: 3   LKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKI 62

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RPK++ ++  KI +L L   TI  N+YYTG  Y S T   A++NV+P+F F++A++  +E
Sbjct: 63  RPKMTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLE 122

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENW 180
           KV +      AK+LGTIV +GG+++ T  K G L+      P  H    D       ++ 
Sbjct: 123 KVNVKKIHSQAKILGTIVTVGGAMLMTVVK-GPLIPLPWANP--HDIHQDSSNTGVKQDL 179

Query: 181 FKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR-NPTL 239
            KG++LI    I W+ ++ L A   K YP  LSL A ICF  S++S+ VALF+ R NP+ 
Sbjct: 180 TKGASLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSA 239

Query: 240 WKLDWNVQLLTIVY 253
           W +  + +LL  VY
Sbjct: 240 WAIHLDSKLLAAVY 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/255 (37%), Positives = 152/255 (59%), Gaps = 9/255 (3%)

Query: 6   PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLS 65
           PY AMI +QF Y G NI+ KISL  G++H V VVYRH +A  ++ PFA+  ERK +PK++
Sbjct: 18  PYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKIT 77

Query: 66  FAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT 125
           F++  ++F+L L G  I  N YY G  Y S T + A+SN++P+ TF+LA L  ME + + 
Sbjct: 78  FSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLK 137

Query: 126 SGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQ------LRHHGNEN 179
                AK+ GT+V + G+++ T +K G +++ F  K  +HI D+             ++ 
Sbjct: 138 KLWCQAKIAGTVVTVAGAMLMTIYK-GPIVELFWTK-YMHIQDSSHANTTSSKNSSSDKE 195

Query: 180 WFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGRNPT 238
           + KGS L++ + ++W++  +L A + K Y    LSL  LICF  +LQ+  V   +  NP+
Sbjct: 196 FLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPS 255

Query: 239 LWKLDWNVQLLTIVY 253
            W++ W++ LL   Y
Sbjct: 256 AWRIGWDMNLLAAAY 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 154/259 (59%), Gaps = 16/259 (6%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           ME   P+++M+++Q    G +IL K  L KG+++ V VVYRH +A +++ PFA+  ++K 
Sbjct: 10  MEKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKV 69

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RPK++  +  KI +L L    I  N+YY G  Y + T ATA+ NV+P+ TF+LA++ G+E
Sbjct: 70  RPKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLE 129

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGN--- 177
           +VK+   R   KV+GT+  +GG++I T      L+KG    P++ ++ T  +  H     
Sbjct: 130 RVKLRCIRSTGKVVGTLATVGGAMIMT------LVKG----PVLDLFWTKGVSAHNTAGT 179

Query: 178 --ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235
              +  KG+ L+     S++ ++IL A   + YPA LSL A IC   +++ + VAL + +
Sbjct: 180 DIHSAIKGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEK 239

Query: 236 -NPTLWKLDWNVQLLTIVY 253
            NP+ W + W+ +LLT  Y
Sbjct: 240 GNPSAWAIGWDTKLLTATY 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGG3|WTR45_ARATH WAT1-related protein At5g64700 OS=Arabidopsis thaliana GN=At5g64700 PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 150/263 (57%), Gaps = 14/263 (5%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           ME+  PY+ + ++Q  Y    ++ K     G+N  VFV YR   A + L P A+  ERK 
Sbjct: 3   MESKKPYLMVTIIQVIYTIMFLISKAVFNGGMNTFVFVFYRQAFATIFLAPLAFFFERKS 62

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
            P LSF    KIF+L+LFG T+ L++     SY S T+A A +  +P+ TF LA L GME
Sbjct: 63  APPLSFVTFIKIFMLSLFGVTLSLDLNGIALSYTSATLAAATTASLPAITFFLALLFGME 122

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLI-HIYDTDQLRHH---- 175
           ++K+ S +G AK++G  VC+GG +I   +K G LLK     PL  H Y   +  H     
Sbjct: 123 RLKVKSIQGTAKLVGITVCMGGVIILAIYK-GPLLK----LPLCPHFYHGQEHPHRNNPG 177

Query: 176 ----GNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVAL 231
               G+ +W KG  L++TS+I W  WL+L   V K YP+ L    L C  +S+QS  +A+
Sbjct: 178 HVSGGSTSWLKGCVLMITSNILWGLWLVLQGRVLKVYPSKLYFTTLHCLLSSIQSFVIAI 237

Query: 232 FLGRNPTLWKLDWNVQLLTIVYC 254
            L R+ + WKL WN++L+ ++YC
Sbjct: 238 ALERDISAWKLGWNLRLVAVIYC 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 150/258 (58%), Gaps = 11/258 (4%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           M    PY+ MI +QF   G+ I++  +L +G N  V +VYR+++A ++L PFA + ERK 
Sbjct: 8   MHKLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKV 67

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RPK++ +V+ KI  L      +     Y G +  S T  +A+ N++PS TF++A++L ME
Sbjct: 68  RPKMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRME 127

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGN--- 177
           KV I   R  AK++GT+V +GG+L+ T +K G L+      P     + DQ   H N   
Sbjct: 128 KVNIAEVRSKAKIIGTLVGLGGALVMTLYK-GPLIPLPWSNP-----NMDQQNGHTNNSQ 181

Query: 178 --ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235
              NW  G+ LIL   ++WS + +L +   K YPA LSL+ALIC   ++QS  VAL + R
Sbjct: 182 DHNNWVVGTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVER 241

Query: 236 NPTLWKLDWNVQLLTIVY 253
           +P+ W + W+ +L   +Y
Sbjct: 242 HPSGWAVGWDARLFAPLY 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score =  173 bits (439), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 147/255 (57%), Gaps = 13/255 (5%)

Query: 2   EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR 61
           E+  PY AM+ +QF Y G N++ K+ L++G++H V V YR+  A   + PFA + ERK R
Sbjct: 7   ESAKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query: 62  PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEK 121
           PK++F +  +IFVLAL G  I  N+YY G    S T A A++N++P+ TF+++ +  MEK
Sbjct: 67  PKMTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEK 126

Query: 122 VKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHH---GNE 178
           V++   R  AKV+GT+V + G+++   +K           PLI    +    H      E
Sbjct: 127 VEMRKVRFQAKVVGTLVIVVGAMLMILFK----------IPLITFLRSHLTGHALSPAGE 176

Query: 179 NWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPT 238
           ++ K +  +L +  SW+++ +L A   K Y + LSL+ ++CF  +LQS+ +   +  N +
Sbjct: 177 DYLKATVFLLIASFSWASFFVLQAATLKRYSSHLSLSTMVCFMGTLQSTALTFVMEPNLS 236

Query: 239 LWKLDWNVQLLTIVY 253
            W + +++ LL   Y
Sbjct: 237 AWNIGFDMNLLASAY 251

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 145/254 (57%), Gaps = 12/254 (4%)

Query: 2   EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR 61
           E+  PY AM+ +QF Y G N++ K  L++G++H V V YR+  A   + PFA + ERK R
Sbjct: 7   ESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query: 62  PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEK 121
            K++F +  +IF+LAL G  I  N+YY G    S T ++A+SN++P+ T +LA L  MEK
Sbjct: 67  SKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEK 126

Query: 122 VKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDT--DQLRHHGNEN 179
           V++   R   KV+GT+V + GS++  F+K           P I+ + +           +
Sbjct: 127 VEMRKVRCLVKVMGTLVTVVGSILMIFYK----------GPFINFFRSHLTAASSPPTAD 176

Query: 180 WFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTL 239
           + K +  +L + +SW+++ +L A   K Y A LS++ ++CF  +LQS  +A  +  NP+ 
Sbjct: 177 YLKAAVFLLLASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSA 236

Query: 240 WKLDWNVQLLTIVY 253
             + +++ LL   Y
Sbjct: 237 LNIGFDMNLLASAY 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  164 bits (416), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 145/252 (57%), Gaps = 7/252 (2%)

Query: 6   PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLS 65
           P++AM+LVQ  Y G NI  K+++E G+  L+ V YR + A +   P A+ LERK RPK++
Sbjct: 8   PFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKIT 67

Query: 66  FAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT 125
             ++ ++F  ++ GAT +  +Y+ G    S T+A AL+N++P+ TFLLA +   E V I 
Sbjct: 68  LRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGIK 127

Query: 126 SGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGN----ENWF 181
              G AKV+GT+VC+ G+++ +F+    +  G   +  IH    + +  HG+     N+F
Sbjct: 128 KASGQAKVIGTLVCVIGAMVLSFYHGHTIGIG---ESKIHWAYAENITKHGSSSGHSNFF 184

Query: 182 KGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWK 241
            G  LI+ + +SW+AW I+   +S+ + AP +   L+C   S+Q   +AL      + W 
Sbjct: 185 LGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTISDWS 244

Query: 242 LDWNVQLLTIVY 253
           L   ++ ++ +Y
Sbjct: 245 LSSPLRFISALY 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMB7|WTR7_ARATH WAT1-related protein At1g43650 OS=Arabidopsis thaliana GN=At1g43650 PE=2 SV=1

 Score =  164 bits (414), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 149/258 (57%), Gaps = 14/258 (5%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           M  +   +AM+ VQ  Y G  +L K+++ +G N  VFV YR   A + L PFA+ LE   
Sbjct: 2   MMEHKANMAMVFVQIVYAGMPLLSKVAISQGTNPFVFVFYRQAFAALALSPFAFFLESSK 61

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
              LSF ++ KIF ++L G T+ LN+YY      + T A A +N IPS TF+LA L  +E
Sbjct: 62  SSPLSFILLLKIFFISLCGLTLSLNLYYVAIENTTATFAAATTNAIPSITFVLALLFRLE 121

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKP-LIHIYDTDQLRH---HG 176
            V +    G AKV G++V + G+L+F           FV+ P LI+ Y++  + +     
Sbjct: 122 TVTLKKSHGVAKVTGSMVGMLGALVF----------AFVKGPSLINHYNSSTIPNGTVPS 171

Query: 177 NENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRN 236
            +N  KGS  +L ++  W  W+I+ + V K+YPA L L AL C F+ +QS+  A+ + RN
Sbjct: 172 TKNSVKGSITMLAANTCWCLWIIMQSKVMKEYPAKLRLVALQCLFSCIQSAVWAVAVNRN 231

Query: 237 PTLWKLDWNVQLLTIVYC 254
           P++WK+++ + LL++ YC
Sbjct: 232 PSVWKIEFGLPLLSMAYC 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 146/262 (55%), Gaps = 14/262 (5%)

Query: 2   EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR 61
           E    ++AM+ +QF Y G +++ + +L  G++ LVF VYR+++A++LL PFAY LE+K R
Sbjct: 16  EKLQLHIAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKER 75

Query: 62  PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEK 121
           P ++   + + F LAL G T +   Y  G    S T A+++ N +P+ TFL+A LL +EK
Sbjct: 76  PAITLNFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEK 135

Query: 122 VKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIY------DTDQLRHH 175
           V+I    G +K+LGT +C+ G+ + T +K        +  P  H++      ++  L   
Sbjct: 136 VRINRRDGISKILGTALCVAGASVITLYKGPT-----IYTPASHLHAHLLTTNSAVLAPL 190

Query: 176 GN---ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALF 232
           GN   +NW  G   ++   +SWS WL+  A V K YPA LS+ +  CFF  +Q   +A F
Sbjct: 191 GNAAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAF 250

Query: 233 LGRNPTLWKLDWNVQLLTIVYC 254
             R+   W      +L TI+Y 
Sbjct: 251 CERDSQAWVFHSGWELFTILYA 272

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
255555847	372	Auxin-induced protein 5NG4, putative [Ri	0.996	0.680	0.712	1e-100
224117720	366	predicted protein [Populus trichocarpa]	1.0	0.693	0.688	8e-97
297742489	365	unnamed protein product [Vitis vinifera]	1.0	0.695	0.671	1e-96
359474183	356	PREDICTED: auxin-induced protein 5NG4-li	0.964	0.688	0.680	4e-94
297742487	366	unnamed protein product [Vitis vinifera]	0.996	0.691	0.640	3e-87
297742488	331	unnamed protein product [Vitis vinifera]	0.893	0.685	0.685	2e-85
359473995	357	PREDICTED: auxin-induced protein 5NG4-li	0.960	0.683	0.651	3e-85
359473997	361	PREDICTED: auxin-induced protein 5NG4-li	0.893	0.628	0.685	4e-85
116789039	392	unknown [Picea sitchensis]	0.972	0.630	0.466	7e-58
148910349	429	unknown [Picea sitchensis]	0.980	0.580	0.456	3e-56

>gi|255555847|ref|XP_002518959.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223541946|gb|EEF43492.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/257 (71%), Positives = 209/257 (81%), Gaps = 4/257 (1%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           M   + Y AMILVQ AYGGSNIL+KI+LEKGLN LVFVVYRH++AM+L+GPFAYVLERK 
Sbjct: 1   MATCTSYAAMILVQLAYGGSNILMKIALEKGLNQLVFVVYRHLIAMILVGPFAYVLERKQ 60

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RP LS  V+ KIFVLA  G TIHLNVYY G +Y S TVA+ALSNVIPS TF++A LLGME
Sbjct: 61  RPPLSLPVITKIFVLASLGTTIHLNVYYAGLAYTSATVASALSNVIPSLTFVMAVLLGME 120

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDT---DQLRHHGN 177
           K+KI+S RG AKV GT++CIGGSL+FTFWK G L K   ++PLI IY +   ++LR H  
Sbjct: 121 KLKISSARGWAKVFGTVICIGGSLVFTFWKGGYLYKSLEERPLISIYSSRGHNELR-HAK 179

Query: 178 ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNP 237
           ENW KGSALILTSHI+WSAWLIL A V K YPA LSL  LICFFAS+QSS +ALF GRNP
Sbjct: 180 ENWIKGSALILTSHIAWSAWLILQAVVYKVYPARLSLTTLICFFASIQSSVLALFFGRNP 239

Query: 238 TLWKLDWNVQLLTIVYC 254
           TLWKLDWNVQLLTI+YC
Sbjct: 240 TLWKLDWNVQLLTIIYC 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117720|ref|XP_002317651.1| predicted protein [Populus trichocarpa] gi|222860716|gb|EEE98263.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 177/257 (68%), Positives = 205/257 (79%), Gaps = 3/257 (1%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           M+A +PY AM+LVQFAYGGSNIL+KI+LEKGLN +VFVVYRHV+A++LLGPFAYV+ERK 
Sbjct: 1   MQACAPYAAMLLVQFAYGGSNILMKIALEKGLNQIVFVVYRHVIAVILLGPFAYVIERKQ 60

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RP LS +V+ KIFVL+  G TIHLNVYY G +Y S TVA+ALSNVIPS TF++A LLGME
Sbjct: 61  RPSLSLSVIIKIFVLSSLGTTIHLNVYYAGLAYTSPTVASALSNVIPSLTFIMAVLLGME 120

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLR---HHGN 177
           KVK  S RG AK+LGT +CI GSL+FTFWK G L K F  + LI+IY T        H  
Sbjct: 121 KVKTESPRGWAKMLGTAICISGSLVFTFWKGGYLFKSFENRALINIYSTKGSAGEYRHAK 180

Query: 178 ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNP 237
           ENW KGSALILTSH++WSAWLIL A V K YPA LSLN LICFFAS+QSSF+ALF  R  
Sbjct: 181 ENWIKGSALILTSHVAWSAWLILQAVVYKVYPARLSLNTLICFFASIQSSFLALFFARTT 240

Query: 238 TLWKLDWNVQLLTIVYC 254
            +WKLDWNVQLLTI+YC
Sbjct: 241 AIWKLDWNVQLLTIIYC 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742489|emb|CBI34638.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 172/256 (67%), Positives = 202/256 (78%), Gaps = 2/256 (0%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           M+ + PY AM+L+Q AYGGSNIL+KI+++KGLN +VFVVYRH++AM+LLGPFAYV ER  
Sbjct: 1   MKNWGPYGAMVLIQLAYGGSNILIKIAIDKGLNQIVFVVYRHIIAMLLLGPFAYVFERTQ 60

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RP LSF+VM KIFVLA  G T+HLNVYY G  Y S TVA+AL NVIP  TFL+A L  ME
Sbjct: 61  RPSLSFSVMMKIFVLASLGTTVHLNVYYAGLHYTSATVASALGNVIPGLTFLMAVLFRME 120

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDT--DQLRHHGNE 178
           +V+I S RG AKVLGT+VCIGG+L FTFWK G L  GF ++PLI++Y T      HHG +
Sbjct: 121 EVRIRSARGRAKVLGTMVCIGGALTFTFWKGGYLFNGFTERPLINVYSTKGSASEHHGGK 180

Query: 179 NWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPT 238
           NW KGS LIL SHI+WS+WLIL A V K YPA LSLN LICFFASLQSSF+AL   RNP 
Sbjct: 181 NWIKGSVLILISHIAWSSWLILQAVVYKVYPARLSLNVLICFFASLQSSFLALIFARNPV 240

Query: 239 LWKLDWNVQLLTIVYC 254
           LWKL+WNVQLLTI+YC
Sbjct: 241 LWKLEWNVQLLTIIYC 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474183|ref|XP_002273800.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/247 (68%), Positives = 196/247 (79%), Gaps = 2/247 (0%)

Query: 10  MILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVM 69
           M+L+Q AYGGSNIL+KI+++KGLN +VFVVYRH++AM+LLGPFAYV ER  RP LSF+VM
Sbjct: 1   MVLIQLAYGGSNILIKIAIDKGLNQIVFVVYRHIIAMLLLGPFAYVFERTQRPSLSFSVM 60

Query: 70  AKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRG 129
            KIFVLA  G T+HLNVYY G  Y S TVA+AL NVIP  TFL+A L  ME+V+I S RG
Sbjct: 61  MKIFVLASLGTTVHLNVYYAGLHYTSATVASALGNVIPGLTFLMAVLFRMEEVRIRSARG 120

Query: 130 GAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDT--DQLRHHGNENWFKGSALI 187
            AKVLGT+VCIGG+L FTFWK G L  GF ++PLI++Y T      HHG +NW KGS LI
Sbjct: 121 RAKVLGTMVCIGGALTFTFWKGGYLFNGFTERPLINVYSTKGSASEHHGGKNWIKGSVLI 180

Query: 188 LTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQ 247
           L SHI+WS+WLIL A V K YPA LSLN LICFFASLQSSF+AL   RNP LWKL+WNVQ
Sbjct: 181 LISHIAWSSWLILQAVVYKVYPARLSLNVLICFFASLQSSFLALIFARNPVLWKLEWNVQ 240

Query: 248 LLTIVYC 254
           LLTI+YC
Sbjct: 241 LLTIIYC 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742487|emb|CBI34636.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 164/256 (64%), Positives = 197/256 (76%), Gaps = 3/256 (1%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           M+ + P+ AM+LVQ A GGS IL+ I+++KGLN +VFVVYRH++AM+LLGPFAYVLER  
Sbjct: 1   MKTWGPHGAMVLVQLANGGSIILMGIAMDKGLNQIVFVVYRHIIAMLLLGPFAYVLERTQ 60

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RP LSF+VM KIFVLA  G TI LNVYY G  Y S TVA+ALSN IPS TFL+A L  ME
Sbjct: 61  RPSLSFSVMMKIFVLASLGTTIFLNVYYAGLHYTSATVASALSNGIPSLTFLMAVLFRME 120

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTD---QLRHHGN 177
           +V+I S RG AKVLGT+VCI G+L FTFWK G L  GF+++PLI+++ T       +HG 
Sbjct: 121 EVRIQSARGRAKVLGTMVCICGALTFTFWKEGYLFNGFMERPLINVHSTKGSASELNHGV 180

Query: 178 ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNP 237
           +NW KGSALIL S+I+W +WLIL   V K YPA LSLN LICFFASLQSSF+AL   RNP
Sbjct: 181 KNWIKGSALILISNIAWCSWLILQVVVYKVYPARLSLNVLICFFASLQSSFLALIFARNP 240

Query: 238 TLWKLDWNVQLLTIVY 253
            LWKL+WNVQL TI+Y
Sbjct: 241 VLWKLEWNVQLWTIIY 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742488|emb|CBI34637.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 178/229 (77%), Gaps = 2/229 (0%)

Query: 28  LEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVY 87
           L KGLN +VFV YRH++A +LLGPFAYVLER  RP LSF+VM KIFVLA  G TI LNVY
Sbjct: 21  LNKGLNQIVFVEYRHIIATLLLGPFAYVLERTQRPSLSFSVMMKIFVLASLGTTIFLNVY 80

Query: 88  YTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147
           Y G  Y S TVA+ALSN IPS TFL+A L  ME+V+I S RG AKVLGT+VCIGG+L FT
Sbjct: 81  YAGLHYTSATVASALSNGIPSLTFLMAVLFRMEEVRIQSARGRAKVLGTMVCIGGALTFT 140

Query: 148 FWKRGCLLKGFVQKPLIHIYDT--DQLRHHGNENWFKGSALILTSHISWSAWLILLATVS 205
           FWK GCL  GF ++PLI++Y T      HHG +NW KGS LIL SHI+WS+WLIL A V 
Sbjct: 141 FWKGGCLFNGFTERPLINVYSTKGSASEHHGMKNWIKGSVLILISHIAWSSWLILQAVVY 200

Query: 206 KDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC 254
           K YPA LSLN LICFFASLQSSF+AL   RNP LWKL+WNVQLLTI+YC
Sbjct: 201 KVYPARLSLNGLICFFASLQSSFLALIFARNPVLWKLEWNVQLLTIIYC 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473995|ref|XP_002271326.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/247 (65%), Positives = 191/247 (77%), Gaps = 3/247 (1%)

Query: 10  MILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVM 69
           M+LVQ A GGS IL+ I+++KGLN +VFVVYRH++AM+LLGPFAYVLER  RP LSF+VM
Sbjct: 1   MVLVQLANGGSIILMGIAMDKGLNQIVFVVYRHIIAMLLLGPFAYVLERTQRPSLSFSVM 60

Query: 70  AKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRG 129
            KIFVLA  G TI LNVYY G  Y S TVA+ALSN IPS TFL+A L  ME+V+I S RG
Sbjct: 61  MKIFVLASLGTTIFLNVYYAGLHYTSATVASALSNGIPSLTFLMAVLFRMEEVRIQSARG 120

Query: 130 GAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTD---QLRHHGNENWFKGSAL 186
            AKVLGT+VCI G+L FTFWK G L  GF+++PLI+++ T       +HG +NW KGSAL
Sbjct: 121 RAKVLGTMVCICGALTFTFWKEGYLFNGFMERPLINVHSTKGSASELNHGVKNWIKGSAL 180

Query: 187 ILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNV 246
           IL S+I+W +WLIL   V K YPA LSLN LICFFASLQSSF+AL   RNP LWKL+WNV
Sbjct: 181 ILISNIAWCSWLILQVVVYKVYPARLSLNVLICFFASLQSSFLALIFARNPVLWKLEWNV 240

Query: 247 QLLTIVY 253
           QL TI+Y
Sbjct: 241 QLWTIIY 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473997|ref|XP_002271287.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 178/229 (77%), Gaps = 2/229 (0%)

Query: 28  LEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVY 87
           L KGLN +VFV YRH++A +LLGPFAYVLER  RP LSF+VM KIFVLA  G TI LNVY
Sbjct: 51  LNKGLNQIVFVEYRHIIATLLLGPFAYVLERTQRPSLSFSVMMKIFVLASLGTTIFLNVY 110

Query: 88  YTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147
           Y G  Y S TVA+ALSN IPS TFL+A L  ME+V+I S RG AKVLGT+VCIGG+L FT
Sbjct: 111 YAGLHYTSATVASALSNGIPSLTFLMAVLFRMEEVRIQSARGRAKVLGTMVCIGGALTFT 170

Query: 148 FWKRGCLLKGFVQKPLIHIYDT--DQLRHHGNENWFKGSALILTSHISWSAWLILLATVS 205
           FWK GCL  GF ++PLI++Y T      HHG +NW KGS LIL SHI+WS+WLIL A V 
Sbjct: 171 FWKGGCLFNGFTERPLINVYSTKGSASEHHGMKNWIKGSVLILISHIAWSSWLILQAVVY 230

Query: 206 KDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWKLDWNVQLLTIVYC 254
           K YPA LSLN LICFFASLQSSF+AL   RNP LWKL+WNVQLLTI+YC
Sbjct: 231 KVYPARLSLNGLICFFASLQSSFLALIFARNPVLWKLEWNVQLLTIIYC 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789039|gb|ABK25095.1| unknown [Picea sitchensis]

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 120/257 (46%), Positives = 161/257 (62%), Gaps = 10/257 (3%)

Query: 1   MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
           +E   PYVAMI +QF Y G NI+ K+SL +G+NH V VVYRH  A V+L PFA+ +ERK 
Sbjct: 5   IERSKPYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKV 64

Query: 61  RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
           RPKL+F++  +IFVL L G  I  N YY G    S T A ALSNV+P+ TF++A L  ME
Sbjct: 65  RPKLTFSIFCQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVIALLFRME 124

Query: 121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLK----GFVQKPLIHIYDTDQLRHHG 176
            V I   R  AK++GTIVC+GG+++ T +K G ++K       Q P      T       
Sbjct: 125 NVNIKKLRSQAKIVGTIVCVGGAMLMTLYK-GPIVKMVWSAHHQSP-----QTSAAAAID 178

Query: 177 NENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRN 236
           N+NW  GS LI+ + ++WS   IL A V K Y A LSL  LICF  +LQ++ ++L + R+
Sbjct: 179 NKNWIIGSVLIIAATLAWSGLFILQAAVLKKYSAQLSLATLICFLGTLQATVLSLAVVRD 238

Query: 237 PTLWKLDWNVQLLTIVY 253
           P+ W L W++ LLT VY
Sbjct: 239 PSQWALGWDLNLLTAVY 255

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910349|gb|ABR18253.1| unknown [Picea sitchensis]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 115/252 (45%), Positives = 161/252 (63%), Gaps = 3/252 (1%)

Query: 2   EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR 61
           E   PY+AMI +QF Y G NI+ K+SL  G++H V VVYRH +A  ++ PFA+ +ERK R
Sbjct: 17  ERSKPYIAMISLQFGYAGMNIITKVSLTNGMSHYVLVVYRHAVATAVIAPFAFFVERKVR 76

Query: 62  PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEK 121
           PKL+F+V  +IF L L G  I  N YY G  Y S T A A+SNV+P+ TF++A L  MEK
Sbjct: 77  PKLTFSVFCQIFALGLLGPVIDQNFYYAGLKYTSPTFACAMSNVLPAMTFVMAALFRMEK 136

Query: 122 VKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWF 181
           V I   R   K+ GT+VC+ G+++ T +K G ++  F Q    H + +     H +++W 
Sbjct: 137 VDIKKVRSQTKIAGTVVCVAGAMLMTLYK-GPIVPIFGQA--HHSHFSSPSSVHSDKDWT 193

Query: 182 KGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWK 241
           KGS L++ + ++W+A+ IL A V K Y A LSL  LICF  +LQS  + L + R+P+LW 
Sbjct: 194 KGSVLLVAACLAWAAFFILQAAVLKQYSAQLSLTTLICFMGTLQSITITLVIERDPSLWA 253

Query: 242 LDWNVQLLTIVY 253
           L WN+ LLT VY
Sbjct: 254 LGWNMNLLTAVY 265

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2176065	359	UMAMIT21 "AT5G64700" [Arabidop	0.980	0.693	0.395	1.8e-46
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.968	0.611	0.380	1.8e-46
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.984	0.668	0.377	1.6e-45
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.976	0.652	0.370	2.8e-43
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.992	0.656	0.367	7.3e-43
TAIR|locus:2031144	343	UMAMIT22 "Usually multiple aci	0.964	0.714	0.373	2.5e-42
TAIR|locus:2102629	377	UMAMIT10 "Usually multiple aci	0.964	0.649	0.345	1.1e-41
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.968	0.632	0.365	5.9e-41
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.960	0.619	0.349	3.3e-40
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.988	0.645	0.348	5.3e-40

TAIR|locus:2176065 UMAMIT21 "AT5G64700" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 104/263 (39%), Positives = 151/263 (57%)

Query:     1 MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
             ME+  PY+ + ++Q  Y    ++ K     G+N  VFV YR   A + L P A+  ERK 
Sbjct:     3 MESKKPYLMVTIIQVIYTIMFLISKAVFNGGMNTFVFVFYRQAFATIFLAPLAFFFERKS 62

Query:    61 RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
              P LSF    KIF+L+LFG T+ L++     SY S T+A A +  +P+ TF LA L GME
Sbjct:    63 APPLSFVTFIKIFMLSLFGVTLSLDLNGIALSYTSATLAAATTASLPAITFFLALLFGME 122

Query:   121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLI-HIYDTDQLRH----- 174
             ++K+ S +G AK++G  VC+GG +I   +K G LLK     PL  H Y   +  H     
Sbjct:   123 RLKVKSIQGTAKLVGITVCMGGVIILAIYK-GPLLK----LPLCPHFYHGQEHPHRNNPG 177

Query:   175 H---GNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVAL 231
             H   G+ +W KG  L++TS+I W  WL+L   V K YP+ L    L C  +S+QS  +A+
Sbjct:   178 HVSGGSTSWLKGCVLMITSNILWGLWLVLQGRVLKVYPSKLYFTTLHCLLSSIQSFVIAI 237

Query:   232 FLGRNPTLWKLDWNVQLLTIVYC 254
              L R+ + WKL WN++L+ ++YC
Sbjct:   238 ALERDISAWKLGWNLRLVAVIYC 260

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 97/255 (38%), Positives = 153/255 (60%)

Query:     6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLS 65
             PY AMI +QF Y G NI+ KISL  G++H V VVYRH +A  ++ PFA+  ERK +PK++
Sbjct:    18 PYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKIT 77

Query:    66 FAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT 125
             F++  ++F+L L G  I  N YY G  Y S T + A+SN++P+ TF+LA L  ME + + 
Sbjct:    78 FSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLK 137

Query:   126 SGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNEN------ 179
                  AK+ GT+V + G+++ T +K G +++ F  K  +HI D+       ++N      
Sbjct:   138 KLWCQAKIAGTVVTVAGAMLMTIYK-GPIVELFWTK-YMHIQDSSHANTTSSKNSSSDKE 195

Query:   180 WFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGRNPT 238
             + KGS L++ + ++W++  +L A + K Y    LSL  LICF  +LQ+  V   +  NP+
Sbjct:   196 FLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPS 255

Query:   239 LWKLDWNVQLLTIVY 253
              W++ W++ LL   Y
Sbjct:   256 AWRIGWDMNLLAAAY 270

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 96/254 (37%), Positives = 152/254 (59%)

Query:     1 MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
             ++ + P++ ++ +QF Y G +I+ K +L +G++  V   YRH++A + + PFAY L+RK 
Sbjct:     3 LKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKI 62

Query:    61 RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
             RPK++ ++  KI +L L   TI  N+YYTG  Y S T   A++NV+P+F F++A++  +E
Sbjct:    63 RPKMTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLE 122

Query:   121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENW 180
             KV +      AK+LGTIV +GG+++ T  K G L+      P  H    D       ++ 
Sbjct:   123 KVNVKKIHSQAKILGTIVTVGGAMLMTVVK-GPLIPLPWANP--HDIHQDSSNTGVKQDL 179

Query:   181 FKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR-NPTL 239
              KG++LI    I W+ ++ L A   K YP  LSL A ICF  S++S+ VALF+ R NP+ 
Sbjct:   180 TKGASLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSA 239

Query:   240 WKLDWNVQLLTIVY 253
             W +  + +LL  VY
Sbjct:   240 WAIHLDSKLLAAVY 253

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 94/254 (37%), Positives = 152/254 (59%)

Query:     1 MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
             ME   P+++M+++Q    G +IL K  L KG+++ V VVYRH +A +++ PFA+  ++K 
Sbjct:    10 MEKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKV 69

Query:    61 RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
             RPK++  +  KI +L L    I  N+YY G  Y + T ATA+ NV+P+ TF+LA++ G+E
Sbjct:    70 RPKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLE 129

Query:   121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENW 180
             +VK+   R   KV+GT+  +GG++I T  K G +L  F  K  +  ++T     H     
Sbjct:   130 RVKLRCIRSTGKVVGTLATVGGAMIMTLVK-GPVLDLFWTKG-VSAHNTAGTDIHSA--- 184

Query:   181 FKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR-NPTL 239
              KG+ L+     S++ ++IL A   + YPA LSL A IC   +++ + VAL + + NP+ 
Sbjct:   185 IKGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSA 244

Query:   240 WKLDWNVQLLTIVY 253
             W + W+ +LLT  Y
Sbjct:   245 WAIGWDTKLLTATY 258

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/253 (36%), Positives = 148/253 (58%)

Query:     1 MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
             M    PY+ MI +QF   G+ I++  +L +G N  V +VYR+++A ++L PFA + ERK 
Sbjct:     8 MHKLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKV 67

Query:    61 RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
             RPK++ +V+ KI  L      +     Y G +  S T  +A+ N++PS TF++A++L ME
Sbjct:    68 RPKMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRME 127

Query:   121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENW 180
             KV I   R  AK++GT+V +GG+L+ T +K G L+      P +   +        + NW
Sbjct:   128 KVNIAEVRSKAKIIGTLVGLGGALVMTLYK-GPLIPLPWSNPNMDQQNGHTNNSQDHNNW 186

Query:   181 FKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLW 240
               G+ LIL   ++WS + +L +   K YPA LSL+ALIC   ++QS  VAL + R+P+ W
Sbjct:   187 VVGTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGW 246

Query:   241 KLDWNVQLLTIVY 253
              + W+ +L   +Y
Sbjct:   247 AVGWDARLFAPLY 259

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2031144 UMAMIT22 "Usually multiple acids move in and out Transporters 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 96/257 (37%), Positives = 149/257 (57%)

Query:     1 MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
             M  +   +AM+ VQ  Y G  +L K+++ +G N  VFV YR   A + L PFA+ LE   
Sbjct:     2 MMEHKANMAMVFVQIVYAGMPLLSKVAISQGTNPFVFVFYRQAFAALALSPFAFFLESSK 61

Query:    61 RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
                LSF ++ KIF ++L G T+ LN+YY      + T A A +N IPS TF+LA L  +E
Sbjct:    62 SSPLSFILLLKIFFISLCGLTLSLNLYYVAIENTTATFAAATTNAIPSITFVLALLFRLE 121

Query:   121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHH---GN 177
              V +    G AKV G++V + G+L+F F      +KG     LI+ Y++  + +      
Sbjct:   122 TVTLKKSHGVAKVTGSMVGMLGALVFAF------VKG---PSLINHYNSSTIPNGTVPST 172

Query:   178 ENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNP 237
             +N  KGS  +L ++  W  W+I+ + V K+YPA L L AL C F+ +QS+  A+ + RNP
Sbjct:   173 KNSVKGSITMLAANTCWCLWIIMQSKVMKEYPAKLRLVALQCLFSCIQSAVWAVAVNRNP 232

Query:   238 TLWKLDWNVQLLTIVYC 254
             ++WK+++ + LL++ YC
Sbjct:   233 SVWKIEFGLPLLSMAYC 249

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102629 UMAMIT10 "Usually multiple acids move in and out Transporters 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 87/252 (34%), Positives = 149/252 (59%)

Query:     2 EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR 61
             E+  PY AM+ +QF Y G N++ K+ L++G++H V V YR+  A   + PFA + ERK R
Sbjct:     7 ESAKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query:    62 PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEK 121
             PK++F +  +IFVLAL G  I  N+YY G    S T A A++N++P+ TF+++ +  MEK
Sbjct:    67 PKMTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEK 126

Query:   122 VKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWF 181
             V++   R  AKV+GT+V + G+++   +K   +   F++    H+  T        E++ 
Sbjct:   127 VEMRKVRFQAKVVGTLVIVVGAMLMILFKIPLIT--FLRS---HL--TGHALSPAGEDYL 179

Query:   182 KGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWK 241
             K +  +L +  SW+++ +L A   K Y + LSL+ ++CF  +LQS+ +   +  N + W 
Sbjct:   180 KATVFLLIASFSWASFFVLQAATLKRYSSHLSLSTMVCFMGTLQSTALTFVMEPNLSAWN 239

Query:   242 LDWNVQLLTIVY 253
             + +++ LL   Y
Sbjct:   240 IGFDMNLLASAY 251

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 92/252 (36%), Positives = 144/252 (57%)

Query:     7 YVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSF 66
             ++AM+ +QF Y G +++ + +L  G++ LVF VYR+++A++LL PFAY LE+K RP ++ 
Sbjct:    21 HIAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPAITL 80

Query:    67 AVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITS 126
               + + F LAL G T +   Y  G    S T A+++ N +P+ TFL+A LL +EKV+I  
Sbjct:    81 NFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINR 140

Query:   127 GRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQ--LRHHGN---ENWF 181
               G +K+LGT +C+ G+ + T +K G  +         H+  T+   L   GN   +NW 
Sbjct:   141 RDGISKILGTALCVAGASVITLYK-GPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWT 199

Query:   182 KGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWK 241
              G   ++   +SWS WL+  A V K YPA LS+ +  CFF  +Q   +A F  R+   W 
Sbjct:   200 LGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWV 259

Query:   242 LDWNVQLLTIVY 253
                  +L TI+Y
Sbjct:   260 FHSGWELFTILY 271

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 88/252 (34%), Positives = 145/252 (57%)

Query:     2 EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR 61
             E+  PY AM+ +QF Y G N++ K  L++G++H V V YR+  A   + PFA + ERK R
Sbjct:     7 ESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query:    62 PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEK 121
              K++F +  +IF+LAL G  I  N+YY G    S T ++A+SN++P+ T +LA L  MEK
Sbjct:    67 SKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEK 126

Query:   122 VKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWF 181
             V++   R   KV+GT+V + GS++  F+K G  +  F      H+            ++ 
Sbjct:   127 VEMRKVRCLVKVMGTLVTVVGSILMIFYK-GPFINFFRS----HLTAASS---PPTADYL 178

Query:   182 KGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNPTLWK 241
             K +  +L + +SW+++ +L A   K Y A LS++ ++CF  +LQS  +A  +  NP+   
Sbjct:   179 KAAVFLLLASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSALN 238

Query:   242 LDWNVQLLTIVY 253
             + +++ LL   Y
Sbjct:   239 IGFDMNLLASAY 250

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 91/261 (34%), Positives = 146/261 (55%)

Query:     1 MEAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH 60
             M +  PY+AMI +QF Y G  I+  +SL+ G+NH V  VYRH +A  ++ PFA   ERK 
Sbjct:     6 MNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKI 65

Query:    61 RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGME 120
             RPK++F +  +I +L      +  N+YY G +Y S T A+A +NV+P+ TF+LA +  +E
Sbjct:    66 RPKMTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLE 125

Query:   121 KVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLR-HHG--- 176
              V     R  AKV+GT++ + G+L+ T +K G ++  F++        +D     HG   
Sbjct:   126 SVNFKKVRSIAKVVGTVITVSGALLMTLYK-GPIVD-FIRFGGGGGGGSDGAGGSHGGAG 183

Query:   177 ----NENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALF 232
                 +++W  G+ ++L     W+ + IL +   K YPA LSL  LIC   +L+ + V+L 
Sbjct:   184 AAAMDKHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLV 243

Query:   233 LGRNPTLWKLDWNVQLLTIVY 253
               R+ + WK+ ++  L    Y
Sbjct:   244 TVRDLSAWKIGFDSNLFAAAY 264

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013195001 SubName- Full=Chromosome undetermined scaffold_3577, whole genome shotgun sequence; (270 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	6e-28
pfam00892	126	pfam00892, EamA, EamA-like transporter family	5e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	0.004

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  108 bits (272), Expect = 6e-28
 Identities = 76/246 (30%), Positives = 133/246 (54%), Gaps = 4/246 (1%)

Query: 9   AMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLER-KHRPKLSFA 67
           AM+  + +  G + L K++  KGLN   F+ Y ++LA +LL P  +   R +  P LS +
Sbjct: 17  AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVS 76

Query: 68  VMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSG 127
           +++KI +L   G ++++   Y G  Y + T+A+A+SN+ P+ TF+LA +  MEKV     
Sbjct: 77  ILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKER 135

Query: 128 RGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALI 187
              AKV+GTI+ + G+L+  F+  G  +      P ++           N +W  G AL+
Sbjct: 136 SSVAKVMGTILSLIGALVVIFY-HGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALL 194

Query: 188 LTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR-NPTLWKLDWNV 246
               I  S   IL A +  +YPA  +++ L     S+ +S + L + + NP++W + +++
Sbjct: 195 TIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI 254

Query: 247 QLLTIV 252
            L+TIV
Sbjct: 255 TLITIV 260

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 15  FAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFV 74
            ++    +  K  LE+ ++ L F  YR ++A +LL      L RK    LS   +  +  
Sbjct: 1   LSWALYFVFSKKLLER-ISPLTFTAYRFLIAGILL-ILLLFLLRKPFALLSLKAILALLY 58

Query: 75  LALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVL 134
           L LFG  +   +Y+    YVS + A+ ++++ P FT +L+ LL  EK+ +       ++L
Sbjct: 59  LGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLK------QLL 112

Query: 135 GTIVCIGGSLIFTF 148
           G ++ + G L+   
Sbjct: 113 GIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 137 IVCIGGSLIFTFWKRGCLLKGFVQKPLIHI-YDTDQLRHHGNENW-FKGSALILTSHISW 194
           +V + G+L  T       L  F+   L+H  Y   +LR  G EN   KG AL+L +H+SW
Sbjct: 397 LVTLIGTLY-TLLLLPDSLLRFLLLLLMHTRY---RLRVEGRENIPAKGGALLLGNHVSW 452

Query: 195 SAWLILLATVSK 206
             W +L A   +
Sbjct: 453 IDWALLQAASPR 464

Length = 1146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.87
PRK11689	295	aromatic amino acid exporter; Provisional	99.87
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.85
PRK15430	296	putative chloramphenical resistance permease RarD;	99.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.82
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.75
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.72
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.66
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.63
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.63
COG2510	140	Predicted membrane protein [Function unknown]	99.57
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.48
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.46
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.43
COG2962	293	RarD Predicted permeases [General function predict	99.35
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.31
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.3
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.28
PRK11272	292	putative DMT superfamily transporter inner membran	99.27
PRK11689	295	aromatic amino acid exporter; Provisional	99.19
PLN00411	358	nodulin MtN21 family protein; Provisional	99.15
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.1
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.09
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.03
KOG2765	416	consensus Predicted membrane protein [Function unk	98.99
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.94
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.85
PRK15430	296	putative chloramphenical resistance permease RarD;	98.79
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.78
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.73
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.71
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.7
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.63
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.61
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.47
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.38
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.37
KOG2766	336	consensus Predicted membrane protein [Function unk	98.31
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.23
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.97
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.89
PRK13499	345	rhamnose-proton symporter; Provisional	97.82
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.74
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.73
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.69
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.67
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.62
COG2962	293	RarD Predicted permeases [General function predict	97.5
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.3
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.28
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.24
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.13
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.09
COG2076	106	EmrE Membrane transporters of cations and cationic	97.01
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.0
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.87
PRK11431	105	multidrug efflux system protein; Provisional	96.85
KOG1580	337	consensus UDP-galactose transporter related protei	96.7
KOG2765	416	consensus Predicted membrane protein [Function unk	96.66
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.62
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.62
KOG1581	327	consensus UDP-galactose transporter related protei	96.51
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.5
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.31
PRK13499	345	rhamnose-proton symporter; Provisional	95.62
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.21
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.76
KOG1581	327	consensus UDP-galactose transporter related protei	94.6
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	94.59
KOG1580	337	consensus UDP-galactose transporter related protei	94.18
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	94.07
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	92.99
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	92.17
KOG2922	335	consensus Uncharacterized conserved protein [Funct	91.12
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	90.43
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	87.99
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	87.0
KOG1443	349	consensus Predicted integral membrane protein [Fun	86.92
KOG1582	367	consensus UDP-galactose transporter related protei	83.46
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	83.32
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	81.39

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=3e-26  Score=207.50  Aligned_cols=225  Identities=28%  Similarity=0.447  Sum_probs=176.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHH
Q 041310            3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLER-KHRPKLSFAVMAKIFVLALFGAT   81 (254)
Q Consensus         3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~   81 (254)
                      +.++++.|+...+.++...++.|.+++.|++|..+.++|+.+|+++++++...++| +++++.+++++..+.+.|+++ .
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence            46789999999999999999999999999999999999999999999998776544 233445678889999999998 6


Q ss_pred             HHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHH------ccccccccccCCCchhHHHHHHHHhHHHHhhhcccccc
Q 041310           82 IHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLL------GMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLL  155 (254)
Q Consensus        82 l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~  155 (254)
                      +++.+++.|++|+++++++++.+++|+++.++++++      ++||++++      +++|++++++|+.++...+++...
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~  163 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVF  163 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcccc
Confidence            788899999999999999999999999999999999      47777776      999999999999988754432110


Q ss_pred             cCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          156 KGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      ..-++...+++....+ ...+..+...|++++++|+++||+|++++|+..+++|+....++|++.++++...+.++..++
T Consensus       164 ~~~~~~~~~~~~~~~~-~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        164 VASSPPYLNFRQLSPP-LSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             cccccccccccccccc-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0000000000000000 001123346799999999999999999999999998765677889999888888777777664

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=1.7e-21  Score=172.16  Aligned_cols=191  Identities=16%  Similarity=0.192  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041310            7 YVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNV   86 (254)
Q Consensus         7 ~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l   86 (254)
                      .+.++...++||++++++|...++ +||..++++|+.+++++++++...++++   ..+++++......|.++...++.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~   85 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNGM   85 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999998886 9999999999999999988876543222   235678888888888876677888


Q ss_pred             HHHhh-hccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccc
Q 041310           87 YYTGF-SYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIH  165 (254)
Q Consensus        87 ~~~~l-~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~  165 (254)
                      ++.+. +++++++++++.++.|+++++++++ +|||++++      +++|++++++|+.++...+               
T Consensus        86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~~---------------  143 (292)
T PRK11272         86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSGG---------------  143 (292)
T ss_pred             HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcCc---------------
Confidence            99999 9999999999999999999999985 69999998      9999999999998875110               


Q ss_pred             ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          166 IYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       166 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                                +.+....|++++++++++||.|.+..||..++.  +...+.+++.+++..+.+.....+.
T Consensus       144 ----------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  201 (292)
T PRK11272        144 ----------NLSGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGE  201 (292)
T ss_pred             ----------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCC
Confidence                      011235699999999999999999999876543  3566789999998888888765544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.89  E-value=1.7e-21  Score=172.71  Aligned_cols=192  Identities=18%  Similarity=0.233  Sum_probs=145.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      +..+..++++++||++++++|...++ +||..++++|+.++++.++++.   .++   +.+++   .....|++....++
T Consensus         4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~---~~~---~~~~~---~~~~~g~~~~~~~~   73 (299)
T PRK11453          4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV---ARP---KVPLN---LLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh---cCC---CCchH---HHHHHHHHHHHHHH
Confidence            34467889999999999999999887 9999999999999887665543   111   12222   23344555444566


Q ss_pred             HHHHHhhhc-cchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcc
Q 041310           85 NVYYTGFSY-VSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPL  163 (254)
Q Consensus        85 ~l~~~~l~~-~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~  163 (254)
                      .+++.++++ .++++++++.+++|+++.+++++++|||++++      +++|++++++|+.++.. ++.           
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~-----------  135 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL-----------  135 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC-----------
Confidence            678889998 58899999999999999999999999999998      99999999999998861 100           


Q ss_pred             ccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc--chHHHHHHHHHHHHHHHHHHHhcC
Q 041310          164 IHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAP--LSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                                 .+.+....|++++++++++|++|++++||..++.+++  ...+.+++..+.+.....+...|+
T Consensus       136 -----------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (299)
T PRK11453        136 -----------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDG  198 (299)
T ss_pred             -----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence                       0112235799999999999999999999987665432  344567777766655555555544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.87  E-value=1.4e-20  Score=162.84  Aligned_cols=181  Identities=20%  Similarity=0.286  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 041310           17 YGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSL   96 (254)
Q Consensus        17 wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~   96 (254)
                      ||.+++.+|...+++.|+....+.|+..+.+.+.++...  +     .+++++......|.++..+++.+++.|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877999999999999998887776432  2     234566777788888778999999999999999


Q ss_pred             hhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCC
Q 041310           97 TVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHG  176 (254)
Q Consensus        97 ~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  176 (254)
                      ++++++.++.|+++.+++++++|||++++      +++|++++++|+.++. .++                        +
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~------------------------~  122 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDG------------------------N  122 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCC------------------------c
Confidence            99999999999999999999999999998      9999999999999876 211                        0


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          177 NENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       177 ~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      .+....|+.++++++++|+.+.+..|+..++.+. +...+.+++.++.+...+.....++
T Consensus       123 ~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (260)
T TIGR00950       123 LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP  182 (260)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1234679999999999999999999998877652 2355667899999988888876554

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.87  E-value=1.7e-20  Score=166.18  Aligned_cols=179  Identities=11%  Similarity=0.011  Sum_probs=135.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 041310            2 EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGAT   81 (254)
Q Consensus         2 ~~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (254)
                      +|.+++++++.++++||++++.+|...++ +||..+.+.|+.+++++++++.   +++   +.+++++. ....+.++..
T Consensus         1 ~~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~---~~~~~~~~-~~~~~~l~~~   72 (295)
T PRK11689          1 TSQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFP---RLRQFPKR-YLLAGGLLFV   72 (295)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccc---ccccccHH-HHHHHhHHHH
Confidence            46788999999999999999999999887 9999999999999998887653   111   11111122 2334444456


Q ss_pred             HHHHHHHHhhhc----cchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccC
Q 041310           82 IHLNVYYTGFSY----VSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKG  157 (254)
Q Consensus        82 l~~~l~~~~l~~----~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~  157 (254)
                      .++.+++.++++    +++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++... ++..+. 
T Consensus        73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~-  144 (295)
T PRK11689         73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL-  144 (295)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh-
Confidence            777778888765    57788899999999999999999999999998      999999999999988721 110000 


Q ss_pred             ccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 041310          158 FVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP  209 (254)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~  209 (254)
                              .     +..++..+...|++++++|+++||.|+++.||..++++
T Consensus       145 --------~-----~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~  183 (295)
T PRK11689        145 --------A-----ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN  183 (295)
T ss_pred             --------h-----hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence                    0     00001112346999999999999999999999877664

>TIGR00688 rarD rarD protein

Probab=99.85  E-value=9.4e-20  Score=157.96  Aligned_cols=163  Identities=12%  Similarity=0.110  Sum_probs=131.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHH-HHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH-----RPKLSFA-VMAKIFVLALF   78 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~   78 (254)
                      |++.+++.++++||.+++++|. .++ +||.+++++|+.+++++++++...+++++     .++.+++ ++......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            6889999999999999999998 455 99999999999999988777654432211     1112222 34456667776


Q ss_pred             HHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCc
Q 041310           79 GATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGF  158 (254)
Q Consensus        79 ~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~  158 (254)
                      . ..++.+++++++++++++++++.++.|+++++++++++|||++++      ++++++++++|+.++...+        
T Consensus        80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~--------  144 (256)
T TIGR00688        80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLK--------  144 (256)
T ss_pred             H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHc--------
Confidence            4 688999999999999999999999999999999999999999998      9999999999999876210        


Q ss_pred             cCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041310          159 VQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSK  206 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~  206 (254)
                                       ++..     .++++++++||.|.+..|+..+
T Consensus       145 -----------------~~~~-----~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       145 -----------------GSLP-----WEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             -----------------CCch-----HHHHHHHHHHHHHHHHHhhcCC
Confidence                             0111     3568899999999999988754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.85  E-value=6.3e-20  Score=162.55  Aligned_cols=186  Identities=10%  Similarity=0.061  Sum_probs=140.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 041310            2 EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR--P-KLSFAVMAKIFVLALF   78 (254)
Q Consensus         2 ~~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~   78 (254)
                      ++.|+.+++++++++||.+++.+|.. ++ +||.++.++|+.++.+++.++...+++++.  + ..+++++.. ...+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHH
Confidence            45689999999999999999999985 44 999999999999999877776544321110  0 113344433 335555


Q ss_pred             HHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCc
Q 041310           79 GATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGF  158 (254)
Q Consensus        79 ~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~  158 (254)
                      +...++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++....        
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~--------  147 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTF--------  147 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHc--------
Confidence            56788999999999999999999999999999999999999999998      9999999999999886111        


Q ss_pred             cCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHH
Q 041310          159 VQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP-APLSLNALICFFASLQS  226 (254)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~  226 (254)
                                       ++.     ..+.++++++||.|++..||..++.. .....+.+++.++....
T Consensus       148 -----------------~~~-----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~  194 (296)
T PRK15430        148 -----------------GSL-----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL  194 (296)
T ss_pred             -----------------CCc-----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH
Confidence                             011     14578899999999999988643221 12334556665555443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.82  E-value=4.5e-18  Score=150.91  Aligned_cols=179  Identities=16%  Similarity=0.080  Sum_probs=148.7

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhh
Q 041310           22 ILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATA  101 (254)
Q Consensus        22 v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~  101 (254)
                      +.-|.++++--+|..+++.|+.++.+.+.+.. ..+.+++++.+++++++.+..|+++ ..++.+.+.+++|++++++++
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSW-SSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence            46788887535699999999999887665542 1122223456789999999999996 788899999999999999999


Q ss_pred             hcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchH
Q 041310          102 LSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWF  181 (254)
Q Consensus       102 l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (254)
                      +.++.|+++++++++++|||++++      ++.|++++++|+.+.. .+                         +.+...
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~~-------------------------~~~~~~  144 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-DT-------------------------ELSFNW  144 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-CC-------------------------cccccH
Confidence            999999999999999999999998      9999999999998654 10                         011235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--hCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          182 KGSALILTSHISWSAWLILLATVSK--DYPAPLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       182 ~G~~l~l~aa~~~A~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      .|++++++|+++|++|.++.||..+  +++ +...+.+++..+++.+.|.....|+
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcc
Confidence            6999999999999999999999887  665 5889999999999999999887664

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.81  E-value=6.6e-18  Score=149.41  Aligned_cols=189  Identities=13%  Similarity=0.127  Sum_probs=148.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 041310            3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATI   82 (254)
Q Consensus         3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l   82 (254)
                      +.+++.++++++++|+.+++++|.+.++ +||..++++|+.+++++++++... ++   ++.+++++......|++. ..
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~-~~---~~~~~~~~~~~~~~g~~~-~~   83 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP-WR---LRFAKEQRLPLLFYGVSL-GG   83 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH-Hh---ccCCHHHHHHHHHHHHHH-HH
Confidence            4578999999999999999999999988 999999999999999888776422 11   134567888788888875 67


Q ss_pred             HHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCc
Q 041310           83 HLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKP  162 (254)
Q Consensus        83 ~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~  162 (254)
                      .+.+++++++++++++++++.++.|+++.+++    +|++.        +..++.++++|+.++. ..+.          
T Consensus        84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~----------  140 (293)
T PRK10532         84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQ----------  140 (293)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCC----------
Confidence            78899999999999999999999999998876    35443        3456788899998876 1110          


Q ss_pred             cccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhc
Q 041310          163 LIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLG  234 (254)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (254)
                                  +.+.....|+++.++++++||.|++..||..++++ +... .++..++++.+.|+....+
T Consensus       141 ------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~  198 (293)
T PRK10532        141 ------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA  198 (293)
T ss_pred             ------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc
Confidence                        01122357999999999999999999999987765 3554 5667777777777776544

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.75  E-value=4.5e-16  Score=141.06  Aligned_cols=182  Identities=14%  Similarity=0.101  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041310           19 GSNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLERKHRPKL--SFAVMAKIFVLALFGATIHLNVYYTGFSYVS   95 (254)
Q Consensus        19 ~~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~   95 (254)
                      ...+..|.+++. +| |..+..+|+.++.+.+.++... +.+++|+.  .+++++..+.+|+++... +...+.++++++
T Consensus        63 ~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s  139 (350)
T PTZ00343         63 LYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence            445678999987 99 9999999999998765554322 22222333  245788899999998654 455679999999


Q ss_pred             hhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCC
Q 041310           96 LTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHH  175 (254)
Q Consensus        96 ~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  175 (254)
                      ++.+.++.++.|+++++++++++|||++++      +++++++.+.|+.+.+..                          
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~~--------------------------  187 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASVK--------------------------  187 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheecc--------------------------
Confidence            999999999999999999999999999998      999999999999997611                          


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC------CcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          176 GNENWFKGSALILTSHISWSAWLILLATVSKDYP------APLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       176 ~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      +.+....|++++++|+++|+.++++.||..++.+      ++.....++..++++.++|+....|.
T Consensus       188 ~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        188 ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            0112367999999999999999999999876532      12335555688999999999886664

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.72  E-value=7.3e-16  Score=135.51  Aligned_cols=168  Identities=14%  Similarity=0.164  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310            7 YVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLE-RKHRPKLSFAVMAKIFVLALFGATIHLN   85 (254)
Q Consensus         7 ~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~l~~~   85 (254)
                      ..+.+.++++|+...+.+|...++ -++  ..++++..+++++.++...+. ++.+++.+++.+..... +.++...++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAI-SAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHH-HHHHHHHHHH
Confidence            467789999999999999976655 444  347777777777777665421 22223333344444444 4444578899


Q ss_pred             HHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccc
Q 041310           86 VYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIH  165 (254)
Q Consensus        86 l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~  165 (254)
                      +++.+++++++++++.+.++.|+++.+++++++|||++++      +++|+++++.|+.++.. ++.             
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~-------------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF-------------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc-------------
Confidence            9999999999999999999999999999999999999998      99999999999998862 110             


Q ss_pred             ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 041310          166 IYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP  209 (254)
Q Consensus       166 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~  209 (254)
                                 ......|+.+.++++++|+.|.+..|+..++.+
T Consensus       139 -----------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~  171 (281)
T TIGR03340       139 -----------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVP  171 (281)
T ss_pred             -----------cccchhHHHHHHHHHHHHHHhhhhccccccchh
Confidence                       011236888999999999999999887655443

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.66  E-value=8.1e-16  Score=117.72  Aligned_cols=125  Identities=23%  Similarity=0.414  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 041310           15 FAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYV   94 (254)
Q Consensus        15 ~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~   94 (254)
                      ++||.+.+..|...++ .||....++|+.++.+ ++++....+++..++.+.+++......|.++...++.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4699999999999988 9999999999999998 6666555444333456778888888899887789999999999999


Q ss_pred             chhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           95 SLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        95 ~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      ++++++.+.+++|+++.+++++++||+++++      +++|+++.+.|+.+++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998      9999999999999864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.63  E-value=4.1e-14  Score=126.65  Aligned_cols=200  Identities=19%  Similarity=0.267  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 041310           12 LVQFAYGGSNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLER-KHRPKLSFAVMAKIFVLALFGATIHLNVYYT   89 (254)
Q Consensus        12 ~a~~~wg~~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~   89 (254)
                      ..+++=..+.+.+....+.|.+ |..-.+.-+..-.++..+....+++ +...+..+++|...++++++. ..++.+...
T Consensus        20 ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~   98 (334)
T PF06027_consen   20 VLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD-VEANYLVVL   98 (334)
T ss_pred             HHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence            3445555566666665555555 5555555555545555554443322 111222345666777789998 577889999


Q ss_pred             hhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccccccc
Q 041310           90 GFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDT  169 (254)
Q Consensus        90 ~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~  169 (254)
                      |++||+.+.+.++..+.-+++.+++++++|||.++.      +++|++++++|+.+++..+...            ++  
T Consensus        99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~------------~~--  158 (334)
T PF06027_consen   99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS------------GS--  158 (334)
T ss_pred             HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc------------cc--
Confidence            999999999999999999999999999999999998      9999999999999887433110            11  


Q ss_pred             ccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310          170 DQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRN  236 (254)
Q Consensus       170 ~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (254)
                         .+.++.+...||++++.++++||+++++.++..|+.+ ......+..++|.++..+...++|+.
T Consensus       159 ---~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~  221 (334)
T PF06027_consen  159 ---DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS  221 (334)
T ss_pred             ---cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence               1123456689999999999999999999999999886 47778888889999888888888774

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.63  E-value=1.2e-13  Score=120.13  Aligned_cols=183  Identities=25%  Similarity=0.399  Sum_probs=137.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH   83 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~   83 (254)
                      .+.....+...+.|+.+....|...++..++....+.|+.++.+...+.... ++...++.. +++......+.++...+
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~   83 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPAL-RPWLLLLLLALLGLALP   83 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccccc-cchHHHHHHHHHHHHHH
Confidence            4567788888899999999999988764666777777999998874443322 111111111 22344555566666788


Q ss_pred             HHHHHHhhhccchhhHhhhcchhHHHHHHHHH-HHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCc
Q 041310           84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAF-LLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKP  162 (254)
Q Consensus        84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~  162 (254)
                      +.+++.++++++++++..+.++.|+++.++++ +++|||++++      ++.+..+++.|+.++...+ .          
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~-~----------  146 (292)
T COG0697          84 FLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGG-G----------  146 (292)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCC-C----------
Confidence            99999999999999999999999999999997 7779999998      9999999999999987211 0          


Q ss_pred             cccccccccccCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHH-HHHH
Q 041310          163 LIHIYDTDQLRHHGNEN-WFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNA-LICF  220 (254)
Q Consensus       163 ~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~-~~~~  220 (254)
                                   .... ...|+.+.++++++|+++.+.+|+.. +.+ +..... +++.
T Consensus       147 -------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~  191 (292)
T COG0697         147 -------------GGGILSLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL  191 (292)
T ss_pred             -------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH
Confidence                         0111 46899999999999999999998877 443 344454 4544

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.57  E-value=2.3e-14  Score=109.02  Aligned_cols=134  Identities=15%  Similarity=0.230  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-KLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      ...+.+++++.||...++.|...++ +||...++.|.....+.+..+....++.+.+ ..+.|.|..+.+-|+.+ .+..
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glsw   81 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHH
Confidence            4678899999999999999999987 9999999999999988888887765543222 34778899999999765 7999


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      .+||.+++...++....+-.+.|++++++++++++||++.+      +|+|+++..+|++++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999997      9999999999998764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.48  E-value=3.1e-12  Score=113.17  Aligned_cols=181  Identities=12%  Similarity=0.092  Sum_probs=132.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLN   85 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~   85 (254)
                      ++++.++++++||+..+..|...  |.++.++.  |..++.+++..+....+ +. +...++.+..-...|++ ....+.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~~-~~~~~~~~~~g~l~G~~-w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-LP-EFWALSIFLVGLLSGAF-WALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-CC-cccccHHHHHHHHHHHH-HHhhhh
Confidence            46788999999999999999865  58888776  78888877766655433 21 11122333334444444 467889


Q ss_pred             HHHHhhhccchhhHhhhcc-hhHHHHHHHHHHHccccccccccCCCch----hHHHHHHHHhHHHHhhhcccccccCccC
Q 041310           86 VYYTGFSYVSLTVATALSN-VIPSFTFLLAFLLGMEKVKITSGRGGAK----VLGTIVCIGGSLIFTFWKRGCLLKGFVQ  160 (254)
Q Consensus        86 l~~~~l~~~~~~~a~~l~~-~~Pv~~~lls~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~li~~~~g~~~~~~~~~  160 (254)
                      +++.++++++.+.+..+.+ +.|++..+.+.+++||+.+++      +    ++|+++.++|+.++...++..       
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~-------  141 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS-------  141 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc-------
Confidence            9999999999999999988 888999999999999999997      8    999999999988875221000       


Q ss_pred             CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHH
Q 041310          161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICF  220 (254)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~  220 (254)
                               .  .+.+..+...|.++.++|+++|+.|.+..|+.  +++ |.+.++.+..
T Consensus       142 ---------~--~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~  187 (290)
T TIGR00776       142 ---------A--GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAI  187 (290)
T ss_pred             ---------c--ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHH
Confidence                     0  00000233679999999999999999999875  354 5666544443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.46  E-value=2.5e-12  Score=111.19  Aligned_cols=131  Identities=21%  Similarity=0.316  Sum_probs=112.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLN--HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGAT   81 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   81 (254)
                      .++..+.+.+++.|+.+.+..|...++ .+  +..+..+|+.++.+++.+.....++.  +..+.+++......+++++.
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  203 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTA  203 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHH
Confidence            468899999999999999999998865 66  44556678999998888877653322  23456778788889998878


Q ss_pred             HHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhH
Q 041310           82 IHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGS  143 (254)
Q Consensus        82 l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv  143 (254)
                      +++.+|+.++++.++++++.+.+++|+++.++++++++|+++.+      ++.|.++.+.|+
T Consensus       204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999998      999999999886

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.43  E-value=1.9e-11  Score=103.39  Aligned_cols=186  Identities=14%  Similarity=0.095  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLN   85 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~   85 (254)
                      +++++..++..-=...-+.|...+. ++|...+.+|..+++++++++....    +.+.+++++......|+.- ...+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RPw----r~r~~~~~~~~~~~yGvsL-g~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRPW----RRRLSKPQRLALLAYGVSL-GGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhHH----HhccChhhhHHHHHHHHHH-HHHHH
Confidence            4666777766666777788999988 9999999999999999988875321    1346778888888889875 56789


Q ss_pred             HHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccc
Q 041310           86 VYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIH  165 (254)
Q Consensus        86 l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~  165 (254)
                      +||.++++++-+.+..+.++-|+.+++++.    +|.        ...+.+.+++.|+.++... +.             
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~--------~d~vwvaLAvlGi~lL~p~-~~-------------  140 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RRL--------RDFVWVALAVLGIWLLLPL-GQ-------------  140 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc----cch--------hhHHHHHHHHHHHHhheec-cC-------------
Confidence            999999999999999999999999887653    221        2678889999999988621 11             


Q ss_pred             ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHh
Q 041310          166 IYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFL  233 (254)
Q Consensus       166 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (254)
                               +....+..|..++++++.||++|++..||..+..+ ..+-+..-+.++++..+|+....
T Consensus       141 ---------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~  198 (292)
T COG5006         141 ---------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQ  198 (292)
T ss_pred             ---------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhh
Confidence                     11233568999999999999999999999887655 46778899999999999998744

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.35  E-value=1.7e-10  Score=99.70  Aligned_cols=192  Identities=15%  Similarity=0.124  Sum_probs=144.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-C--CCCHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR-P--KLSFAVMAKIFVLALFGA   80 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~g~~~~   80 (254)
                      .||++..+.+.++||......|.. ++ .|+.++.+.|.+.+...++.+....++.+. .  ..++|.+....+.+++. 
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li-   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI-   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-
Confidence            589999999999999999999986 45 999999999999998887776655433211 0  12345666677777764 


Q ss_pred             HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccC
Q 041310           81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQ  160 (254)
Q Consensus        81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~  160 (254)
                      ..+...|.++.+.-.+-++++=.+.+|++.++++.+++|||+++-      |+++.+++.+|+.......|         
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g---------  147 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG---------  147 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC---------
Confidence            789999999999999999999999999999999999999999997      99999999999998874322         


Q ss_pred             CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 041310          161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNP  237 (254)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (254)
                                      +..     ...+.=+++|+.|-.+-|+. + .++ .+-.+..++.-....+.+.+..+..+
T Consensus       148 ----------------~lp-----wval~la~sf~~Ygl~RK~~-~-v~a-~~g~~lE~l~l~p~al~yl~~l~~~~  200 (293)
T COG2962         148 ----------------SLP-----WVALALALSFGLYGLLRKKL-K-VDA-LTGLTLETLLLLPVALIYLLFLADSG  200 (293)
T ss_pred             ----------------CCc-----HHHHHHHHHHHHHHHHHHhc-C-Cch-HHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence                            111     22355678999999885443 2 332 44444555554444445555454443

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.31  E-value=5.3e-13  Score=113.57  Aligned_cols=199  Identities=16%  Similarity=0.228  Sum_probs=136.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH-RPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      +.++..++ ..+..+.++.+..+  +.+|.+....|+++-.++..|.....+... .|+   ....++++.|+.|+ ...
T Consensus        39 gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~---g~R~~LiLRg~mG~-tgv  111 (346)
T KOG4510|consen   39 GLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPE---GKRKWLILRGFMGF-TGV  111 (346)
T ss_pred             CceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCC---CcEEEEEeehhhhh-hHH
Confidence            44555555 56666666666554  278999999998777776666544322111 111   12234567788874 456


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccc
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLI  164 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~  164 (254)
                      .+.|++++|.+.++|+++.++.|+++.+++|.++|||.++.      +.++..+.+.|+++++   +|+..++       
T Consensus       112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv---RPpFlFG-------  175 (346)
T KOG4510|consen  112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV---RPPFLFG-------  175 (346)
T ss_pred             HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe---cCCcccC-------
Confidence            67788999999999999999999999999999999999997      9999999999999998   5544332       


Q ss_pred             cccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHH
Q 041310          165 HIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVA  230 (254)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (254)
                        ++|.++.++.-+....|...++.++++-|.-.|+.|++.|+.+. .....+..+++.+..+...
T Consensus       176 --~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~  238 (346)
T KOG4510|consen  176 --DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGC  238 (346)
T ss_pred             --CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHH
Confidence              11111111222334567888888888888877788888787653 4444455556655554443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.30  E-value=1.5e-10  Score=102.37  Aligned_cols=135  Identities=7%  Similarity=0.075  Sum_probs=111.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      .|.++.+.+++.|+.+.+..|...++ .+|..... -..++++++.++......  ....+...+...+.+|++++.+.+
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPY  223 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999998765 88877654 445666666666544322  122344556666789999988999


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhh
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFW  149 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~  149 (254)
                      .+|+++++++++++++.+.+++|++..++++++++|+++..      +++|.++.++|++.....
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999997      999999999999988643

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.28  E-value=1.7e-11  Score=93.48  Aligned_cols=103  Identities=17%  Similarity=0.331  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHH
Q 041310           39 VYRHVLAMVLLGPFAYVLERKH--RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFL  116 (254)
Q Consensus        39 ~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~  116 (254)
                      .+|+.++.+.+..+...+++.+  .+..+++++......|+++...++.++++|+++++ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            6899999988888776643211  11233355566677788875688999999999999 58889999999999999999


Q ss_pred             HccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310          117 LGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF  148 (254)
Q Consensus       117 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  148 (254)
                      ++|||++++      ++.+++++++|++++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999999998      99999999999999973

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.27  E-value=2.1e-10  Score=101.43  Aligned_cols=136  Identities=16%  Similarity=0.098  Sum_probs=114.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH   83 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~   83 (254)
                      .++.++.+.+++.|+.+.+..|...+  -++....+++..++++++.++....+.......+.+++....+.|++++.+.
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999998643  3455667888888888887776543221111235678888899999988899


Q ss_pred             HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      +.+|++++++.++++++.+.+++|++++++++++++|+++..      +++|.++.+.|+.+..
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999997      9999999999999876

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.19  E-value=8e-10  Score=97.90  Aligned_cols=132  Identities=15%  Similarity=0.171  Sum_probs=104.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      .|.++.+.++++|+.+.+..|...++ .++.....   ..+.+.+.+.... ........+.+.+...++.|+ .+.+.+
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~t~~~~  229 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAA-AMGFGY  229 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHH-HHHHHH
Confidence            37889999999999999999998655 78766532   3333333333322 221112345667777777775 457899


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF  148 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  148 (254)
                      .+|+.++++.++++++.+.+++|++..++++++++|+++..      +++|.++.+.|+.+...
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999999999999999997      99999999999988763

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.15  E-value=2e-09  Score=97.93  Aligned_cols=136  Identities=9%  Similarity=0.071  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEKGLNHL-VFVVYRHVLAMVLLGPFAYVLERKHRP----KLSFAVMAKIFVLALFGA   80 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~-~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~   80 (254)
                      +..+++.+++.|+.+.+..|...++ .|+. ...++...++.+.+.+.....++...+    ..+.. ....++.++. +
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-T  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-H
Confidence            6678899999999999999988776 7554 666777777776666555543332111    12222 2235555655 4


Q ss_pred             HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhc
Q 041310           81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWK  150 (254)
Q Consensus        81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~  150 (254)
                      .+.+.+|++++++.+++.++.+.+++|++++++++++++|++++.      +++|.++.+.|+.+....+
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence            678999999999999999999999999999999999999999998      9999999999999987433

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.10  E-value=5.1e-09  Score=92.88  Aligned_cols=137  Identities=15%  Similarity=0.238  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKG--LNHLVFVVYRHVLAMVLLGPFAYVLERKH-----RPKLSFAVMAKIFVLAL   77 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~--~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~   77 (254)
                      .|.++.+.+++.|+.+.+..|...++.  .+......+-..++.+.+.......+...     ....+.+.+...+++|+
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i  222 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence            588899999999999999999875441  22233344444444443333332222211     12346678888999999


Q ss_pred             HHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           78 FGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        78 ~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      +++.+.+.+|+.++++.++++++.+.+++|++..++++++++|+++..      +++|.++.++|+.+..
T Consensus       223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            998999999999999999999999999999999999999999999997      9999999999998775

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.09  E-value=2.7e-08  Score=88.53  Aligned_cols=185  Identities=14%  Similarity=0.090  Sum_probs=137.9

Q ss_pred             HHHHHHHhc-CCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 041310           22 ILVKISLEK-GLN--HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTV   98 (254)
Q Consensus        22 v~~K~~~~~-~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~   98 (254)
                      +..+..... ...  |..+++..+....+...+.....+++   +.++..+...+..+++. .++..+-+.+++|++...
T Consensus        17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~   92 (303)
T PF08449_consen   17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPT   92 (303)
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHH
Confidence            444444333 344  88999999999887777665443312   22334455566677775 678889999999999999


Q ss_pred             HhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCC
Q 041310           99 ATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNE  178 (254)
Q Consensus        99 a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (254)
                      -.++-++.|+.+++++.+++|+|.+++      ++++.++..+|+.+....+....+          .      .+....
T Consensus        93 ~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~----------~------~~~~~~  150 (303)
T PF08449_consen   93 QIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS----------S------SNSSSF  150 (303)
T ss_pred             HHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc----------c------cccccc
Confidence            999999999999999999999999998      999999999999988743311100          0      011112


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHH
Q 041310          179 NWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALF  232 (254)
Q Consensus       179 ~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  232 (254)
                      +...|+++.+.+.++-+...+.++|..++++. +....++...++.+...+....
T Consensus       151 ~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  151 SSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            23349999999999999999999999877653 5678888999988888887776

; GO: 0055085 transmembrane transport

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.03  E-value=2.2e-09  Score=94.40  Aligned_cols=134  Identities=9%  Similarity=0.019  Sum_probs=94.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHL----VFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFG   79 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   79 (254)
                      .++..+.+.+++.|+.+.+..|...++ .+|.    ....+.+.+.++.+.+.....+++. .......+......+.+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence            346678899999999999999976433 4442    2233333333222222222212111 111223344455666666


Q ss_pred             HHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310           80 ATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI  145 (254)
Q Consensus        80 ~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  145 (254)
                      +.+.+.+|++++++.++++++.+.+++|++..++++++++|+++..      +++|.++.++|+.+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            6789999999999999999999999999999999999999999997      99999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.99  E-value=4.8e-09  Score=93.43  Aligned_cols=104  Identities=22%  Similarity=0.286  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccC
Q 041310           81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQ  160 (254)
Q Consensus        81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~  160 (254)
                      .++++.+..++++|+++..+++.++.-+|+..++.++..||+++.      |.++..+.+.|+++++..+  +..     
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~--s~~-----  236 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGD--SKQ-----  236 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecc--ccc-----
Confidence            578899999999999999999999999999999999999999997      9999999999999987432  110     


Q ss_pred             CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 041310          161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDY  208 (254)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~  208 (254)
                                 +++..+.....|+++++++|+.||+|+++.||...+.
T Consensus       237 -----------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~e  273 (416)
T KOG2765|consen  237 -----------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDE  273 (416)
T ss_pred             -----------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence                       1112244568999999999999999999999876655

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.94  E-value=8.6e-09  Score=91.44  Aligned_cols=139  Identities=16%  Similarity=0.241  Sum_probs=105.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHHHHH-H
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPK---------LSFAVMAK-I   72 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~---------~~~~~~~~-~   72 (254)
                      ..|.++.+++++.|+...+..|...++ +.||..+..+....+.+.+.|+....+......         ........ .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            348889999999999999999998761 399999999999999998888876533211000         00001111 2


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310           73 FVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF  148 (254)
Q Consensus        73 ~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  148 (254)
                      ...+.......+.+++.+++++++..+++..+..|+++.++++++++|+++.+      +++|.++.+.|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            22222222333457778999999999999999999999999999999999998      99999999999998763

specificities overlap.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.85  E-value=1.3e-07  Score=81.61  Aligned_cols=152  Identities=18%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310           65 SFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL  144 (254)
Q Consensus        65 ~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  144 (254)
                      ++|+...+..=++++ .+.+.+.+.++++.+++.-.++..+-.+++++++++++|+|++++      ||+++.+.++|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            456777777778886 788899999999999999999999999999999999999999998      9999999999999


Q ss_pred             HHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHH
Q 041310          145 IFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFAS  223 (254)
Q Consensus       145 li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~  223 (254)
                      +........       .  ++.++++.+.+..+.+...|.++.+.++++-++..++.+|..|+.+. ....+......|.
T Consensus        86 lv~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi  156 (244)
T PF04142_consen   86 LVQLSSSQS-------S--DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGI  156 (244)
T ss_pred             eeecCCccc-------c--ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            876322110       0  00000000001123456789999999999999999999999987543 2334555566666


Q ss_pred             HHHHHHHHH
Q 041310          224 LQSSFVALF  232 (254)
Q Consensus       224 ~~~~~~~~~  232 (254)
                      ++.++....
T Consensus       157 ~~~~~~~~~  165 (244)
T PF04142_consen  157 LFNLLALLL  165 (244)
T ss_pred             HHHHHHHhc
Confidence            666555443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.79  E-value=2e-07  Score=82.61  Aligned_cols=132  Identities=15%  Similarity=0.155  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041310            8 VAMILVQFAYGGSNILVKISLEKG-LNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNV   86 (254)
Q Consensus         8 l~li~a~~~wg~~~v~~K~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l   86 (254)
                      +..+.+++.|+.+.+..|....++ .++.....+-..++.+...+.... ............+......|+. +.+.+.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~  229 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIV-TTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHH-HHHHHHH
Confidence            456788999999999999864331 122333333333433332221100 0000111122223344445554 4689999


Q ss_pred             HHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           87 YYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        87 ~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      ++.++++.+++.++.+.+++|++..++++++++|+++..      +++|.++.+.|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998      9999999999988876

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.78  E-value=3.6e-07  Score=79.35  Aligned_cols=133  Identities=20%  Similarity=0.270  Sum_probs=106.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVV-YRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATI   82 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l   82 (254)
                      ..+.++.+.+++.|+.+.+..|... + .++..... +..........+..  ..... ...+.+++......|++++..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            3688999999999999999999876 4 77777776 44442222222221  11111 234567888889999998768


Q ss_pred             HHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           83 HLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        83 ~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      .+.+++.++++.+++..+.+.++.|++..++++++++|+++.+      +++|.++.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998      9999999999999876

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.73  E-value=5.4e-07  Score=81.84  Aligned_cols=137  Identities=14%  Similarity=0.219  Sum_probs=100.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------CCCHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEK------GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP--------KLSFAVM   69 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--------~~~~~~~   69 (254)
                      ..|.++.+++++.|+...+..|...++      ..++.....+-..+++++++|+....+.....        ..+...+
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            358889999999999999999998764      25677677777888888888887643321000        0000011


Q ss_pred             HHHHHHHHHHHHHHHHHHH----HhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310           70 AKIFVLALFGATIHLNVYY----TGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI  145 (254)
Q Consensus        70 ~~~~~~g~~~~~l~~~l~~----~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  145 (254)
                      ...... ++...+.+.+++    .+++++++...++..++.|+++.++++++++|+++..      +++|.++.+.|+.+
T Consensus       273 ~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        273 GIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            112222 222234444444    6999999999999999999999999999999999997      99999999999987


Q ss_pred             Hh
Q 041310          146 FT  147 (254)
Q Consensus       146 i~  147 (254)
                      -.
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            54

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.71  E-value=8.7e-07  Score=70.37  Aligned_cols=133  Identities=19%  Similarity=0.295  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CC-------CHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEK------GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP----KL-------SFAV   68 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~-------~~~~   68 (254)
                      |..+.+.+.+.-+...+..|...++      ..++.++..+-...+.+.+++.....++....    ..       ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            4678899999999999999998776      68999999999999999999988776543310    00       1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310           69 MAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI  145 (254)
Q Consensus        69 ~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  145 (254)
                      +...+..|++. ...+...+..++++++...+++...-.+.+.++++++++|+++.+      +++|+++++.|..+
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            44556666665 577889999999999999999999999999999999999999997      99999999999874

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.70  E-value=3.5e-07  Score=80.95  Aligned_cols=129  Identities=15%  Similarity=0.113  Sum_probs=101.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRH---VLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGA   80 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~---~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   80 (254)
                      .|+..+.+++.+.|+.+.+..|..  + .||.+..+...   .+++.++.+..  + +. +|. ..+........|++ .
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~-~~~~~~~~~~~Gi~-~  221 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPL-KKYAILLNILPGLM-W  221 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h-cc-cch-HHHHHHHHHHHHHH-H
Confidence            679999999999999999999975  3 88888854444   34444333322  1 11 222 22334444558888 4


Q ss_pred             HHHHHHHHHhhh-ccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchh----HHHHHHHHhHHHHh
Q 041310           81 TIHLNVYYTGFS-YVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKV----LGTIVCIGGSLIFT  147 (254)
Q Consensus        81 ~l~~~l~~~~l~-~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~li~  147 (254)
                      .+.+.+|+.+.+ +.+++.++++.+..|+...+.+.+++||+.+++      ++    +|.++.+.|+.++.
T Consensus       222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            788999999999 999999999999999999999999999999998      88    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.63  E-value=1.1e-06  Score=66.80  Aligned_cols=69  Identities=22%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           73 FVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        73 ~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      ...++++..+.+.++..++++.|.+.+..+.++.|+++.+++++++|||++++      +++|+++.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            33444666788999999999999999999989999999999999999999998      9999999999999875

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.61  E-value=7.6e-07  Score=75.82  Aligned_cols=131  Identities=10%  Similarity=0.063  Sum_probs=111.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      -|..+.+.+..+|+.+-+..|..-+. .+.-.-+..-+.+++++.+|+........  -.+.+-+..-+.+|++++.+.|
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSalPY  224 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSALPY  224 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcccch
Confidence            46778899999999999999998655 66677788899999999999876533221  2344556667888999999999


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL  144 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  144 (254)
                      .+...++++.+...-+++++++|.+.++.++++++|+++..      ||++++..+.+..
T Consensus       225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa  278 (292)
T COG5006         225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998      9999988777655

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.47  E-value=4.8e-06  Score=64.94  Aligned_cols=118  Identities=17%  Similarity=0.212  Sum_probs=90.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      +++++++...++=+...+..|...++ .+..+.... . ...    .   ....  .|       ......|+..+.+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~----~---~~~~--~p-------~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAA----L---LAFG--LA-------LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHH----H---HHHh--cc-------HHHHHHHHHHHHHHH
Confidence            47888888888889999999998876 554332221 1 100    0   0000  01       114567777778999


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHH--HccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFL--LGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      .+|..++++.+.+.+..+.+..++++.+.++.  +++|+++.+      +++|+++.++|+.++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888888885  899999998      9999999999999986

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.38  E-value=0.00023  Score=63.66  Aligned_cols=205  Identities=15%  Similarity=0.137  Sum_probs=146.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC------CCHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEKG---LNHLVFVVYRHVLAMVLLGPFAYVLERK----HRPK------LSFAVMAKI   72 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~------~~~~~~~~~   72 (254)
                      .++.++...+.++.-....|.....+   +.|...++.--++-.++...+.+...|+    ..+.      ..+++....
T Consensus        16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~   95 (345)
T KOG2234|consen   16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV   95 (345)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence            46777888889999999999887665   6677777777777777777776665322    1111      123345555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhccc
Q 041310           73 FVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRG  152 (254)
Q Consensus        73 ~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~  152 (254)
                      ..=++++ ++.+-++|.++.+.+++.-.+...+--+-+++++.+++++|++++      ||.+.++.+.|+.++.....+
T Consensus        96 ~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   96 SVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence            5556665 677779999999999999999999999999999999999999998      999999999999988622111


Q ss_pred             ccccCccCCcccccccccccc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-chHHHHHHHHHHHHHHHHH
Q 041310          153 CLLKGFVQKPLIHIYDTDQLR-HHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAP-LSLNALICFFASLQSSFVA  230 (254)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  230 (254)
                      .                +++. .....+...|....+.+.+.-+.-.++.+|+.|+-..+ +..|.-...+|.++.+...
T Consensus       169 ~----------------~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~  232 (345)
T KOG2234|consen  169 P----------------TGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI  232 (345)
T ss_pred             C----------------CCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            1                0011 12245668899999999999999999999999864322 2223333445555544444


Q ss_pred             HHh
Q 041310          231 LFL  233 (254)
Q Consensus       231 ~~~  233 (254)
                      +..
T Consensus       233 ~~~  235 (345)
T KOG2234|consen  233 LLQ  235 (345)
T ss_pred             hhc
Confidence            333

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.37  E-value=3.7e-06  Score=74.93  Aligned_cols=181  Identities=16%  Similarity=0.105  Sum_probs=137.8

Q ss_pred             HHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHh
Q 041310           23 LVKISLEK-GLN-HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVAT  100 (254)
Q Consensus        23 ~~K~~~~~-~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~  100 (254)
                      ..|..++. |.+ |..++..++.++.+.+...-....++..+..++..+...+-+|++. .+...+-..++++.+++-.-
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q  113 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQ  113 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHH
Confidence            45776662 243 8888888888877776665544323322222445677788888886 57788889999999999999


Q ss_pred             hhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCch
Q 041310          101 ALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENW  180 (254)
Q Consensus       101 ~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (254)
                      .+=.++|+++.++++++.+|+.+++      .+..++....|+.+....                          +..-+
T Consensus       114 ~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------------e~~fn  161 (316)
T KOG1441|consen  114 TIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------------ELSFN  161 (316)
T ss_pred             HHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------------ccccc
Confidence            9999999999999999999999997      788888888888876521                          12234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh--h--CCCcchHHHHHHHHHHHHHH-HHHHHhcCCC
Q 041310          181 FKGSALILTSHISWSAWLILLATVSK--D--YPAPLSLNALICFFASLQSS-FVALFLGRNP  237 (254)
Q Consensus       181 ~~G~~l~l~aa~~~A~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  237 (254)
                      ..|...++++.+..+...|+.|+..+  +  .+ +.....++.-++.+.++ |.....|++.
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~  222 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNK  222 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccc
Confidence            78999999999999999999999874  2  33 46777777778888888 8877766643

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.31  E-value=3.1e-08  Score=84.30  Aligned_cols=190  Identities=18%  Similarity=0.273  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041310           13 VQFAYGGSNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGF   91 (254)
Q Consensus        13 a~~~wg~~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l   91 (254)
                      +.++=+.++.....+ +.|.+ |..-.+.-+..=+++..++..+++ +    .-+..|.+.+++++... =++++...+.
T Consensus        27 SL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~----~~~~~~~hYilla~~DV-EaNy~vV~Ay   99 (336)
T KOG2766|consen   27 SLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLFRR-K----YIKAKWRHYILLAFVDV-EANYFVVKAY   99 (336)
T ss_pred             HHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHhhh-H----HHHHHHHHhhheeEEee-cccEEEeeeh
Confidence            333333333333333 33344 777788888888888888876633 2    12234555778888774 3455667799


Q ss_pred             hccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccccccccc
Q 041310           92 SYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQ  171 (254)
Q Consensus        92 ~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~  171 (254)
                      |||+.....++-.-.-.-+.+++|+++|-|-.+.      ++.|.++|+.|++++++.+  .           |+.|   
T Consensus       100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD--V-----------~agd---  157 (336)
T KOG2766|consen  100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD--V-----------HAGD---  157 (336)
T ss_pred             hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEee--e-----------cccc---
Confidence            9999999988866555556678999999999987      9999999999999988432  1           1111   


Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          172 LRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       172 ~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                        .+++.+..+||.+.+++|-+||+.++.-+-..|+.+. ..+.....++|+++...- .++++
T Consensus       158 --~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~-~elm~~lgLfGaIIsaIQ-~i~~~  217 (336)
T KOG2766|consen  158 --RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADR-VELMGFLGLFGAIISAIQ-FIFER  217 (336)
T ss_pred             --ccCCCCCccCcEEEEecceeeeeccccHHHHHhcCcH-HHHHHHHHHHHHHHHHHH-Hhhhc
Confidence              1234567899999999999999999998888888764 777888888999988766 56665

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.23  E-value=3.2e-05  Score=69.65  Aligned_cols=138  Identities=14%  Similarity=0.132  Sum_probs=107.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHH
Q 041310            3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKL--SFAVMAKIFVLALFGA   80 (254)
Q Consensus         3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~   80 (254)
                      ..+|.++++.+++++|.+.+..|....+ .|+.++.+.=.+++.++..+.....+++...+.  +.+....++.-++. .
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~-l  243 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC-L  243 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH-H
Confidence            4678999999999999999999999887 999999888888888888887766666543322  33333333333333 2


Q ss_pred             HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310           81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF  148 (254)
Q Consensus        81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  148 (254)
                      ...+.+.-..+++++++...+=.-+..++..+++.+++|+++++.      .++|.++.++|.++...
T Consensus       244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            455556677888888887776667788999999999999999996      99999999999998763

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.97  E-value=0.0004  Score=60.35  Aligned_cols=132  Identities=19%  Similarity=0.174  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccc
Q 041310           76 ALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLL  155 (254)
Q Consensus        76 g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~  155 (254)
                      +++. .....+.|.|+.+|+++.-..+-...-+|+.+++.-+++++++.+      +|+|+....+|++.+...+ ..  
T Consensus        93 al~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d-~~--  162 (372)
T KOG3912|consen   93 ALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD-VH--  162 (372)
T ss_pred             HHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee-cc--
Confidence            3444 344567789999999999999999999999999999999999998      9999999999999774211 10  


Q ss_pred             cCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHHHHHH
Q 041310          156 KGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP-APLSLNALICFFASLQSSFVA  230 (254)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  230 (254)
                                 .++++  .+...+...|+++.+.+=+.-|...++-+|..+++. +|.....|+-++|.+.+...+
T Consensus       163 -----------~~~~p--~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~  225 (372)
T KOG3912|consen  163 -----------LVTDP--YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA  225 (372)
T ss_pred             -----------cccCC--ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence                       01111  112344578999999999999999999988887653 368889999888855444433

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.89  E-value=6.2e-05  Score=62.18  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccC
Q 041310           81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQ  160 (254)
Q Consensus        81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~  160 (254)
                      +..++.|..+++..+++.++.+..++.-|+.+++++.+++|+...      ++++.++++.|++++...+ +        
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D-N--------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD-N--------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc-c--------
Confidence            456789999999999999999999999999999999999999986      9999999999999886322 1        


Q ss_pred             CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041310          161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKD  207 (254)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~  207 (254)
                                     ...+.+.|+..+++|+..-|+|-++.|+...+
T Consensus       129 ---------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn  160 (290)
T KOG4314|consen  129 ---------------EHADEIIGIACAVGSAFMAALYKVLFKMFIGN  160 (290)
T ss_pred             ---------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                           12345789999999999999999999887643

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.82  E-value=0.0016  Score=58.89  Aligned_cols=178  Identities=13%  Similarity=0.096  Sum_probs=114.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHhhcCC---CCCCCHHHHHHHHHHHHH
Q 041310            3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPF-AYVLERKH---RPKLSFAVMAKIFVLALF   78 (254)
Q Consensus         3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~~   78 (254)
                      -..+++..++++++||+.++-.|...+-+...+..+  -.+++.++.... .....+..   ..+.+.+.+....+.|++
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v--~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~   82 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSV--GGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL   82 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccccCCCchhHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence            345899999999999999999998432222233221  111222222211 11111110   113455677777777777


Q ss_pred             HHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccc---cccccCCCchhHHHHHHHHhHHHHhhhccccc
Q 041310           79 GATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKV---KITSGRGGAKVLGTIVCIGGSLIFTFWKRGCL  154 (254)
Q Consensus        79 ~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~  154 (254)
                      - .+.+..++.++++.+++.+..+ ..+.-+...++..++++|-.   +..+  .....+|+++.++|+.+........ 
T Consensus        83 W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k-  158 (345)
T PRK13499         83 W-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLK-  158 (345)
T ss_pred             H-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhc-
Confidence            4 6889999999999999998876 66888999999999998754   3221  1136788999999999887421100 


Q ss_pred             ccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 041310          155 LKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWL  198 (254)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~  198 (254)
                           ++    ++   ++.+.++.+...|..+++.|.+.+++|.
T Consensus       159 -----~~----~~---~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        159 -----ER----KM---GIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             -----cc----cc---ccccccccchHhHHHHHHHHHHHHHHHH
Confidence                 00    00   0000123566799999999999999999

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0046  Score=54.71  Aligned_cols=191  Identities=14%  Similarity=0.130  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHH----HHHHHHhc-CCChHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310           11 ILVQFAYGGSNI----LVKISLEK-GLNHLVFV-VYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus        11 i~a~~~wg~~~v----~~K~~~~~-~~~p~~~~-~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      +.+++.++.+..    .-|.++.. +.|...++ .++.+...+++...- +.+--..++.+++..+...-..++. .+..
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk-~~~lv~~~~l~~~~~kk~~P~~~lf-~~~i   91 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLK-RLGLVNFRPLDLRTAKKWFPVSLLF-VGML   91 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-HhceeecCCcChHHHHHHccHHHHH-HHHH
Confidence            455566665554    44666654 34433332 367776665555432 2222223456666666555555553 4455


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccc
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLI  164 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~  164 (254)
                      ..-..+++|.++..-.++-+..|+++++....++|.|++.+      .+.+....++|.......+              
T Consensus        92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d--------------  151 (314)
T KOG1444|consen   92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTD--------------  151 (314)
T ss_pred             HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcccc--------------
Confidence            55677999999999999999999999999999999888886      7788887777777654211              


Q ss_pred             cccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          165 HIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP-APLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                                  ..-...|..+++...++-+.+.+..||..+... ..+.+.++..+.....+.....++|+
T Consensus       152 ------------~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge  211 (314)
T KOG1444|consen  152 ------------LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE  211 (314)
T ss_pred             ------------ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence                        011234899999999999999999998765422 14677888888888888777777765

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.73  E-value=0.0006  Score=59.91  Aligned_cols=182  Identities=15%  Similarity=0.191  Sum_probs=114.1

Q ss_pred             HHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 041310           20 SNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLERKH---RPKLSFAVMA-KIFVLALFGATIHLNVYYTGFSYV   94 (254)
Q Consensus        20 ~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~l~~~l~~~~l~~~   94 (254)
                      +|...+.-.+  ++ |+.++.....+-.+.-.......+++.   +.+.+|++.. +.+-.|+.. ++.-++.+++++|+
T Consensus        32 tf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yV  108 (349)
T KOG1443|consen   32 TFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYV  108 (349)
T ss_pred             HHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeee
Confidence            4444444322  33 667766555443332222222222221   1245666554 455666664 77888999999999


Q ss_pred             chhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccC
Q 041310           95 SLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRH  174 (254)
Q Consensus        95 ~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~  174 (254)
                      +.+.-+..=++.++|+.+++..+--||+++.      ...-..+..+|+.+.+ ++.                       
T Consensus       109 tlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~Ks-----------------------  158 (349)
T KOG1443|consen  109 TLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKS-----------------------  158 (349)
T ss_pred             eeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecc-----------------------
Confidence            9999999999999999999999999999985      5566666666777665 221                       


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC----CcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310          175 HGNENWFKGSALILTSHISWSAWLILLATVSKDYP----APLSLNALICFFASLQSSFVALFLGRN  236 (254)
Q Consensus       175 ~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (254)
                        ..-...|-.+.++|.++-++-=.+.+.+.++.|    .|+.......-.-.+.++|..+.+|++
T Consensus       159 --Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  159 --TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             --cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence              112356777777766665553334444444433    255555555555566777888888884

>TIGR00688 rarD rarD protein

Probab=97.69  E-value=0.001  Score=57.40  Aligned_cols=106  Identities=11%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q 041310            8 VAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPK-LSFAVMAKIFVLALFGATIHLNV   86 (254)
Q Consensus         8 l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~l~~~l   86 (254)
                      ...+.+++.|+.+.+..|...++  ++........ .......+..........+. ...++|......|++ +.+++.+
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l  224 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKALKNT--DLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA  224 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence            35678899999999999986533  2222222111 11111111111111111111 223578888888887 5789999


Q ss_pred             HHHhhhccchhhHhhhcchhHHHHHHHHHHH
Q 041310           87 YYTGFSYVSLTVATALSNVIPSFTFLLAFLL  117 (254)
Q Consensus        87 ~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~  117 (254)
                      ++.++++.+++.++.+.|++|++..+++.+.
T Consensus       225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.67  E-value=0.0017  Score=57.72  Aligned_cols=135  Identities=10%  Similarity=0.195  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHH--hhcCC-CC---CCCHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYV--LERKH-RP---KLSFAVMAKIFVLALF   78 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~-~~---~~~~~~~~~~~~~g~~   78 (254)
                      |+.+++.+.++-|...+..+...++ +.++.+..++-..++.+...+....  .+... ..   ....+.+...+...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            8899999999999999999998854 7899999999999998887776655  21110 00   0112233445555655


Q ss_pred             HHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           79 GATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        79 ~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      + ...+.+.+.-.++.++...+++..+--+.+.+++.+++++++++.      +|.|+++.+.|..+=.
T Consensus       235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            5 566777777889999999999999999999999999999999997      9999999999998765

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.62  E-value=0.0061  Score=53.22  Aligned_cols=117  Identities=17%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhc-chhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310           66 FAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALS-NVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL  144 (254)
Q Consensus        66 ~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~-~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  144 (254)
                      .+.+...+..|++- .+.+...+.+.++.+++++..+. ..+=+...+++.++++|.-+.+++.  .-.+++++.++|+.
T Consensus        42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~  118 (269)
T PF06800_consen   42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVI  118 (269)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHH
Confidence            37777778888875 78999999999999999999886 4666788999999999988876321  22457777888888


Q ss_pred             HHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041310          145 IFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLAT  203 (254)
Q Consensus       145 li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~  203 (254)
                      +.+..+++.              +    ..++..+...|....+.+.+.|-.|.+..|-
T Consensus       119 lts~~~~~~--------------~----~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  119 LTSYQDKKS--------------D----KSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             Hhccccccc--------------c----ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            776332110              0    0012344567999999999999999999754

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.50  E-value=0.0057  Score=53.51  Aligned_cols=127  Identities=14%  Similarity=0.175  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041310           11 ILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH--RPKLSFAVMAKIFVLALFGATIHLNVYY   88 (254)
Q Consensus        11 i~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~l~~   88 (254)
                      +..++.||.++..=|..   ++|+.+=...-...-.+..+.......-..  ..+.+.+.+..+...|... +++-.+|.
T Consensus       154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~  229 (293)
T COG2962         154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFA  229 (293)
T ss_pred             HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHH
Confidence            45677888888888875   277766655555555554444444433221  1113456777788889885 79999999


Q ss_pred             HhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           89 TGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        89 ~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      .|-++.+.+.-+++.|..|.+..+++.++++|+++..      +..+-+..-+|+.+..
T Consensus       230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997      9999999999988876

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.30  E-value=0.0025  Score=55.59  Aligned_cols=114  Identities=12%  Similarity=0.037  Sum_probs=81.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH   83 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~   83 (254)
                      .|+++.++.+.+.|..+.+..|..  + +||.+...-..+--.+.-+++....+++.   .+++.+ +-..-|++- ...
T Consensus       137 ~kgi~~Ll~stigy~~Y~~~~~~~--~-~~~~~~~lPqaiGm~i~a~i~~~~~~~~~---~~k~~~-~nil~G~~w-~ig  208 (269)
T PF06800_consen  137 KKGILALLISTIGYWIYSVIPKAF--H-VSGWSAFLPQAIGMLIGAFIFNLFSKKPF---FEKKSW-KNILTGLIW-GIG  208 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc--C-CChhHhHHHHHHHHHHHHHHHhhcccccc---cccchH-HhhHHHHHH-HHH
Confidence            568999999999999999998874  3 78877766443322222222222222111   122233 334567764 678


Q ss_pred             HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHcccccccc
Q 041310           84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT  125 (254)
Q Consensus        84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~  125 (254)
                      +.+++.+.+..+.+.+-.+..+.++...+-+.+++||+=++|
T Consensus       209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k  250 (269)
T PF06800_consen  209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK  250 (269)
T ss_pred             HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence            889999999999999999999999999999999999997776

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.28  E-value=0.0061  Score=46.03  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHH
Q 041310           80 ATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIF  146 (254)
Q Consensus        80 ~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  146 (254)
                      ..+++.+...++|+.|.+.+=.+ ...--+.+++++.++++|++++.      +++|+.+.++|++.+
T Consensus        45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            45788899999999999987644 66778899999999999999997      999999999999875

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.24  E-value=0.00072  Score=51.28  Aligned_cols=110  Identities=16%  Similarity=0.256  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041310           11 ILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTG   90 (254)
Q Consensus        11 i~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~   90 (254)
                      ++..++||.+.+++|..... .++-.-.. |..-....     ..  +      +++...     .+.-.-.....|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll--~------n~~y~i-----pf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL--L------NPKYII-----PFLLNQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH--H------hHHHHH-----HHHHHHHHHHHHHHH
Confidence            45688999999999998765 55443331 32111111     01  0      112222     222123456788999


Q ss_pred             hhccchhhHhhhc-chhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHH
Q 041310           91 FSYVSLTVATALS-NVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIF  146 (254)
Q Consensus        91 l~~~~~~~a~~l~-~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  146 (254)
                      +...+.+.+..+. ++.=+++++.++++.+|..+++      .++|+++.++|+.++
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            9999999999886 6677888888887777777775      899999999998764

Many members are annotated as potential transmembrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.13  E-value=0.0023  Score=49.18  Aligned_cols=65  Identities=22%  Similarity=0.253  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           77 LFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        77 ~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      +.....++.++..++++.+.+.+=.+ ...--+.+++++.++++|+++..      +++|+.+.++|++.+-
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            33446788999999999999998766 56888899999999999999997      9999999999998875

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.09  E-value=0.0034  Score=47.54  Aligned_cols=65  Identities=15%  Similarity=0.267  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           77 LFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        77 ~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      +.+..+++.++..++++.|.+.+=.+ ...--+.++++++++++|++++.      +++|+.+.++|++.+-
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            34446788888999999999988766 66778888999999999999997      9999999999999885

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.01  E-value=0.004  Score=46.60  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhhhccchhhHh-hhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           79 GATIHLNVYYTGFSYVSLTVAT-ALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        79 ~~~l~~~l~~~~l~~~~~~~a~-~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      +...++.+.-.++|++|.+.+= +....--+.+++.++++++|+++..      +++|+.+.++|++.+-
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            3457888999999999999875 4477888999999999999999997      9999999999999874

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.0045  Score=53.78  Aligned_cols=172  Identities=15%  Similarity=0.088  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcC----CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhH
Q 041310           34 HLVFVVYRHVLAMVLLGPFAYVLERK----HRP--KLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIP  107 (254)
Q Consensus        34 p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~--~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~P  107 (254)
                      |..+...+++....+...+.....+-    ..|  +++.+......-+.+.- .+.-..-.+.++|.+++---+=-++.-
T Consensus        61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchhh
Confidence            78888889888877776665443221    112  23333222222222221 122233356677777765555566778


Q ss_pred             HHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHH
Q 041310          108 SFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALI  187 (254)
Q Consensus       108 v~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~  187 (254)
                      +|+.+++.+++|+|-+..      -..+..+.+.|-.+=+           |           +|.. .+.-...|.++.
T Consensus       140 vFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv-----------d-----------qE~~-~~~ls~~GvifG  190 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV-----------D-----------QEGS-TGTLSWIGVIFG  190 (347)
T ss_pred             hHHHHhHHhhcccccccc------cceeehhheehheecc-----------c-----------cccc-cCccchhhhHHH
Confidence            899999999999998885      3334333333332211           1           1111 122346899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          188 LTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       188 l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      +.|.++-|+..+..||......+ .+.++++..+.+.+.++|...+.+.
T Consensus       191 VlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge  239 (347)
T KOG1442|consen  191 VLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE  239 (347)
T ss_pred             HHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch
Confidence            99999999999999876544332 4678999999999999999887765

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.87  E-value=0.032  Score=43.91  Aligned_cols=127  Identities=14%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041310           10 MILVQFAYGGSNILVKISLEKGL-NHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYY   88 (254)
Q Consensus        10 li~a~~~wg~~~v~~K~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~   88 (254)
                      .+.+-..-+....+.-+..+. . +|..-++.-+..+.+++..+....+++..++.+...|. ...-|+++ .....+..
T Consensus         6 a~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w-~~lGG~lG-~~~V~~~~   82 (138)
T PF04657_consen    6 ALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWW-AYLGGLLG-VFFVLSNI   82 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChH-HhccHHHH-HHHHHHHH
Confidence            334444444444443334344 4 49999999999999888887776544322222111222 23356676 56677788


Q ss_pred             HhhhccchhhHhhhcc-hhHHHHHHHHHH----HccccccccccCCCchhHHHHHHHHhHHH
Q 041310           89 TGFSYVSLTVATALSN-VIPSFTFLLAFL----LGMEKVKITSGRGGAKVLGTIVCIGGSLI  145 (254)
Q Consensus        89 ~~l~~~~~~~a~~l~~-~~Pv~~~lls~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  145 (254)
                      +..++.+++++..+.- -+-+...++..+    .-+++++++      |.+|+++.++|+.+
T Consensus        83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            8999999998877644 466666777764    245666665      99999999999863

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.85  E-value=0.0078  Score=45.16  Aligned_cols=64  Identities=9%  Similarity=0.098  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           78 FGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        78 ~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      .+...++.+...++|+.|.+.+=.+ ...--+.+.+++.++++|++++.      +++|+.+.++|++.+-
T Consensus        37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            3346788899999999999987544 66888899999999999999997      9999999999999874

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.70  E-value=0.013  Score=49.96  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcc
Q 041310           72 IFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKR  151 (254)
Q Consensus        72 ~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g  151 (254)
                      ...++.- ..++++-.+.+++|.+=-...+=-+.-|+=+.+++..+.|++-+|+      +....+..+.|+.+.. ++.
T Consensus        88 YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~  159 (337)
T KOG1580|consen   88 YAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKE  159 (337)
T ss_pred             HHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccc
Confidence            3444443 3567777888999998888878788899999999999999999998      9999999999999886 432


Q ss_pred             cccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHH
Q 041310          152 GCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVA  230 (254)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  230 (254)
                      +-  .                .+.+++....|.++.++|-..=..-...++|+.+++.+ ..+++.+.++-+.+.+..-.
T Consensus       160 ~K--v----------------~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~  221 (337)
T KOG1580|consen  160 NK--V----------------GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGL  221 (337)
T ss_pred             cc--c----------------CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhh
Confidence            11  0                11234556789999999988878888888888776643 34566666666665554433


Q ss_pred             HH
Q 041310          231 LF  232 (254)
Q Consensus       231 ~~  232 (254)
                      ++
T Consensus       222 lf  223 (337)
T KOG1580|consen  222 LF  223 (337)
T ss_pred             ee
Confidence            33

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.66  E-value=0.019  Score=51.96  Aligned_cols=140  Identities=14%  Similarity=0.159  Sum_probs=107.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKG---LNHLVFVVYRHVLAMVLLGPFAYVLERK---HRPKLSFAVMAKIFVLAL   77 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~   77 (254)
                      ..|.++.++++++||.+.+..|.-.+++   +|--.+-.+-.++..+++.|......+-   +.+-.+..++...+..++
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l  325 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL  325 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence            4688999999999999999999876652   5655666666777778888766554332   222234456666788889


Q ss_pred             HHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhh
Q 041310           78 FGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFW  149 (254)
Q Consensus        78 ~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~  149 (254)
                      +++.+.-++|..|+-.|++-.+++=+++..-..++.-.++-+.++++.      .++|.+..++|-+.+...
T Consensus       326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence            999999999999999999998887777655556667777778888886      999999999999887643

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.65  E-value=0.0076  Score=53.92  Aligned_cols=137  Identities=15%  Similarity=0.242  Sum_probs=104.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC----C-CCCHHHHHHHH
Q 041310            3 AYSPYVAMILVQFAYGGSNILVKISLE---KGLNHLVFVVYRHVLAMVLLG-PFAYVLERKHR----P-KLSFAVMAKIF   73 (254)
Q Consensus         3 ~~~~~l~li~a~~~wg~~~v~~K~~~~---~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~----~-~~~~~~~~~~~   73 (254)
                      ++.|.+....+.+..+.-.+..|....   +.+|++.+...-.-++...++ |+....+....    . ..+.. .....
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            356888999999999999999999983   358999999999999998888 87665443221    1 12222 33344


Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           74 VLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        74 ~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      +..++. .+.+..-|..+.++++-.-++....==+.+.+.++++++|++++.      +..|.++++.|+.+=.
T Consensus       240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            444554 456777788999999888887776655666777999999999997      9999999999999754

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.62  E-value=0.0013  Score=56.86  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=102.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      ++....+.+++.-+...+..|..-.+ .+....+.+-..++.+.-++.....+.-.+| -.+||+..+..+|+++ .++|
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfg-figQ  267 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFG-FIGQ  267 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhh-hHHH
Confidence            45666777777777778888776444 6666556665666665555544333332333 4567888888899998 7899


Q ss_pred             HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      .+..-|+|.=-++..++..++.-+++.+.-.++++|-++++      .|.|+++.+...+...
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVA  324 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHH
Confidence            99999999999999999999999999999999999999997      8999888877766655

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.62  E-value=0.017  Score=51.45  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHH-HHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMA-KIFVLALFGATIH   83 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~l~   83 (254)
                      -|....+.++++-+.+....|....+ .+.   ...|                ++   +..++.+. .....|++...+.
T Consensus         7 iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~---~~~~~~l~~~~W~~G~~~~~~g   63 (300)
T PF05653_consen    7 IGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AG---SGGRSYLRRPLWWIGLLLMVLG   63 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------cc---chhhHHHhhHHHHHHHHHHhcc
Confidence            46777788888888888888876443 111   0000                00   00011111 1223444444566


Q ss_pred             HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310           84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF  148 (254)
Q Consensus        84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  148 (254)
                      ..+.+.++.+.|.+..+.+..+.-++..+++.+++|||++++      ++.|.++++.|..+++.
T Consensus        64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI  122 (300)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence            778899999999999999999999999999999999999998      99999999999988763

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.23  Score=43.98  Aligned_cols=170  Identities=18%  Similarity=0.173  Sum_probs=115.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcc--hhHHHH
Q 041310           33 NHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSN--VIPSFT  110 (254)
Q Consensus        33 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~--~~Pv~~  110 (254)
                      +|..+.+..-+.+.++-....  ..++.. ...++.|..+...++.+ .+...|-+.+++|.+=-.-.+-=+  +.|++ 
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm-  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAML--KWWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVM-  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH--hccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHH-
Confidence            466667777677666553332  222211 22335566777888887 577789999999986554444433  45655 


Q ss_pred             HHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHH
Q 041310          111 FLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTS  190 (254)
Q Consensus       111 ~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a  190 (254)
                       +++.++.|.|.+.+      +.+...+.-.|+.+....+...                 +..+.+.++...|..+....
T Consensus       125 -lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-----------------s~~~~g~~ns~~G~~Ll~~~  180 (327)
T KOG1581|consen  125 -LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-----------------SSSKSGRENSPIGILLLFGY  180 (327)
T ss_pred             -HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-----------------CccccCCCCchHhHHHHHHH
Confidence             56889999999997      8888888888888776432110                 01223445678899999999


Q ss_pred             HHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHHHHHHH
Q 041310          191 HISWSAWLILLATVSKDYP-APLSLNALICFFASLQSSFVAL  231 (254)
Q Consensus       191 a~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  231 (254)
                      -+.=+.-+..++++.+++. ++..+++..++++++.-.....
T Consensus       181 L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li  222 (327)
T KOG1581|consen  181 LLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI  222 (327)
T ss_pred             HHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh
Confidence            8888888889998887643 2577888888888887776643

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.50  E-value=0.0081  Score=43.95  Aligned_cols=54  Identities=17%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhhccchhhHh-hhcchhHHHHHHHHHHHccccccccccCCCchhHHHHH
Q 041310           79 GATIHLNVYYTGFSYVSLTVAT-ALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIV  138 (254)
Q Consensus        79 ~~~l~~~l~~~~l~~~~~~~a~-~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l  138 (254)
                      ....++.++..++++.+.+.+= +...+-.+.+.+.+.++++|+++.+      |++|+.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            3467888999999999999985 4567899999999999999999998      8988875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.31  E-value=0.00039  Score=59.34  Aligned_cols=172  Identities=13%  Similarity=0.190  Sum_probs=107.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL   84 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~   84 (254)
                      ..++..++-++.||+...+....   |=+|.+-.-.- .+++++.....++.   ..|..+.+.+...+.-|.+- ...|
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGt-T~GALifaiiv~~~---~~p~~T~~~~iv~~isG~~W-s~GQ   73 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGT-TLGALIFAIIVFLF---VSPELTLTIFIVGFISGAFW-SFGQ   73 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhc-cHHHHHHHHHHhee---ecCccchhhHHHHHHhhhHh-hhhh
Confidence            34677888999999987765543   23454443222 23333333332222   23556777777777777764 6788


Q ss_pred             HHHHHhhhccchhhHhhhc-chhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcc
Q 041310           85 NVYYTGFSYVSLTVATALS-NVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPL  163 (254)
Q Consensus        85 ~l~~~~l~~~~~~~a~~l~-~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~  163 (254)
                      ...+-++++.+++++..+. .++-+-+.+++.+.+||-.+..+.  ....+++++.++|+.+.+..+++.          
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~n----------  141 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRNN----------  141 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeecccc----------
Confidence            8999999999999999885 477788999999999998776410  011233444455555444221100          


Q ss_pred             ccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041310          164 IHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATV  204 (254)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~  204 (254)
                       ++       +++.++.-.|....+.|.+.|-.|.++.+..
T Consensus       142 -k~-------~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         142 -KE-------EENPSNLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             -cc-------ccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence             01       1123345678888888988888888877543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.62  E-value=0.71  Score=41.94  Aligned_cols=142  Identities=12%  Similarity=0.055  Sum_probs=85.6

Q ss_pred             chhHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHH-HHHHHh-hc-CCCC-----CCC
Q 041310            4 YSPYVAMILVQFAYGGSN-------ILVKISLEKGLNHLVFVVYRHV---LAMVLLG-PFAYVL-ER-KHRP-----KLS   65 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~-------v~~K~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~~~-~~-~~~~-----~~~   65 (254)
                      .|+.+..+++.+..+...       +..+...+.|.++.....-.+.   ++..+.- ++...+ +| +..+     +.+
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~  252 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA  252 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence            578899999999888888       6666655556887776666555   4433222 222221 12 1110     112


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHhhhccchhhHhh---hcchhH-HHHHHHHHHHccccccccccCCCchhHHHH
Q 041310           66 FAVMAKI----FVLALFGATIHLNVYYTGFSYVSLTVATA---LSNVIP-SFTFLLAFLLGMEKVKITSGRGGAKVLGTI  137 (254)
Q Consensus        66 ~~~~~~~----~~~g~~~~~l~~~l~~~~l~~~~~~~a~~---l~~~~P-v~~~lls~~~~~e~~~~~~~~~~~~~~g~~  137 (254)
                      ++.+.+-    .+-|++- .+.+.++..+-+..+.+.+..   +....+ ++..+-+. ++||+=+..|+..+..++|.+
T Consensus       253 ~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v  330 (345)
T PRK13499        253 KPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV  330 (345)
T ss_pred             chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence            1222222    4445553 466777888888776665555   553444 55555555 699987744445556788999


Q ss_pred             HHHHhHHHHh
Q 041310          138 VCIGGSLIFT  147 (254)
Q Consensus       138 l~~~Gv~li~  147 (254)
                      +.++|..++.
T Consensus       331 liI~g~~lig  340 (345)
T PRK13499        331 VIILAANIVG  340 (345)
T ss_pred             HHHHHHHHHh
Confidence            9999988876

>TIGR00803 nst UDP-galactose transporter

Probab=95.21  E-value=0.1  Score=43.98  Aligned_cols=58  Identities=16%  Similarity=0.014  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310           81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL  144 (254)
Q Consensus        81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  144 (254)
                      ...+.+..+-+++.++..-+....+.++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            556678889999999999999999999999999999999999997      9999999988864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.76  E-value=0.92  Score=36.17  Aligned_cols=140  Identities=12%  Similarity=0.018  Sum_probs=78.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 041310            3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATI   82 (254)
Q Consensus         3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l   82 (254)
                      .+...+..+.+..+-.....+.-+..+.-=+|+.-.+..+..+..++..+....+++......++.-.+...-|+++ ..
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~   81 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AI   81 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hh
Confidence            33444455555555444444444444441359999999999998888887776333221111112112233345555 34


Q ss_pred             HHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHH-HccccccccccCCCchhHHHHHHHHhHHHH
Q 041310           83 HLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFL-LGMEKVKITSGRGGAKVLGTIVCIGGSLIF  146 (254)
Q Consensus        83 ~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  146 (254)
                      +-........+.+++....+ ..-+-++..++..+ +++++   +|.++..+++|+++.++|+.++
T Consensus        82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            44445566677777665544 55566666666664 33322   1234456999999999995544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.60  E-value=0.55  Score=41.62  Aligned_cols=137  Identities=12%  Similarity=0.140  Sum_probs=101.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-----KLSFAVMAKIFVLAL   77 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~   77 (254)
                      ..|+.++..-.+.=|.+....+..... .+++..+.+.-.++.++.-.......+. .++     +..++-+.-+++.+.
T Consensus       171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~-~~~av~F~~~hp~~~~Di~l~s~  249 (327)
T KOG1581|consen  171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGH-LLPAVSFIKEHPDVAFDILLYST  249 (327)
T ss_pred             hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCC-CchHHHHHHcChhHHHHHHHHHH
Confidence            346666666666666666666655543 6899999999888888776665333222 112     223344556777888


Q ss_pred             HHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310           78 FGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF  148 (254)
Q Consensus        78 ~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  148 (254)
                      ++ +..|.+-|+-++.-++-.-+.++.+-=++..+++.+.++.++++.      +|.|..+.|.|+.+=..
T Consensus       250 ~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  250 CG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             hh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence            87 678888888888888888888888888999999999999999998      99999999999887543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.59  E-value=0.49  Score=40.28  Aligned_cols=124  Identities=11%  Similarity=0.096  Sum_probs=90.5

Q ss_pred             HHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccc
Q 041310           87 YYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHI  166 (254)
Q Consensus        87 ~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~  166 (254)
                      ---+++|.+...-+++-++..+.++..-..+++.|++.-      +....++-+..-+.-...+.               
T Consensus        85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~---------------  143 (309)
T COG5070          85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQ---------------  143 (309)
T ss_pred             cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchh---------------
Confidence            346899999999999999999999999999999999886      66666665555443331110               


Q ss_pred             cccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310          167 YDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKD--YPAPLSLNALICFFASLQSSFVALFLGRN  236 (254)
Q Consensus       167 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (254)
                        |+.  .........|-+|.....+.-|.|....|+..|-  .. .+..+++..+.+.-.++.+.+++|++
T Consensus       144 --q~~--~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edw  210 (309)
T COG5070         144 --QAS--AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDW  210 (309)
T ss_pred             --hHH--HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccC
Confidence              000  0012234568889999999999999888886552  23 36778999999998888889888874

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.18  E-value=0.47  Score=40.69  Aligned_cols=134  Identities=13%  Similarity=0.076  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-----KLSFAVMAKIFVLALFG   79 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~   79 (254)
                      |.++++++...=|.+.......-.+ .-+...+...-.+-+.+.+..-.++.+ ..|.     ......|..+.++++.+
T Consensus       173 GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTG-ElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  173 GELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTG-ELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehh-hHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5667777777777777666554333 123344555555555554443332221 1110     00113455667777776


Q ss_pred             HHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           80 ATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        80 ~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                       .+.+.+.|.-+.+-++-.-+++..+--.|+.+.|.++++.+++.|      ||+|..+.|.|+..=+
T Consensus       252 -~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  252 -CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             -HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence             678888899999999999999999999999999999999999998      9999999999988654

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=94.07  E-value=0.058  Score=47.07  Aligned_cols=179  Identities=13%  Similarity=0.082  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHhhhcchhHHHHHHH
Q 041310           35 LVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSY-VSLTVATALSNVIPSFTFLL  113 (254)
Q Consensus        35 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~-~~~~~a~~l~~~~Pv~~~ll  113 (254)
                      ..+++.+|++-+.--++..--... .+|+.+.|++.....+  +  ...+.+-.+++++ ++.-.--++-+-.++..+.+
T Consensus        34 NLITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~i~V~m--F--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~  108 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYAITVAM--F--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL  108 (330)
T ss_pred             eehHHHHHHHHHHhceeeeccccc-cCCCCchhhhheehhe--e--eeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence            456677777766554443211111 2245665665433222  2  3456677788887 46666667777889999999


Q ss_pred             HHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHH
Q 041310          114 AFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHIS  193 (254)
Q Consensus       114 s~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~  193 (254)
                      ++++.++|-+.+      |..+.++.-+|+++..+.+.+..+.-  .++.+++++     ......+..|..+...+-+.
T Consensus       109 g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~~--~~~l~~~~~-----~~~~~~w~iGi~lL~~al~~  175 (330)
T KOG1583|consen  109 GWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRSK--LSGLDSGSA-----QSDFFWWLIGIALLVFALLL  175 (330)
T ss_pred             HHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhhh--hcccccCcc-----cccchHHHHHHHHHHHHHHH
Confidence            999999999998      99999999999998875432211100  111211111     11233467899888888888


Q ss_pred             HHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          194 WSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       194 ~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      -|.-.+.+++.-|++.. +-+..++.=+    +.+|.-++.++
T Consensus       176 sa~mgiyqE~~Y~kyGKh~~EalFytH~----LsLP~Flf~~~  214 (330)
T KOG1583|consen  176 SAYMGIYQETTYQKYGKHWKEALFYTHF----LSLPLFLFMGD  214 (330)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHH----hccchHHHhcc
Confidence            88888888877666532 3344554432    34444444444

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=92.99  E-value=2.8  Score=36.44  Aligned_cols=222  Identities=11%  Similarity=0.033  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310            6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLN   85 (254)
Q Consensus         6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~   85 (254)
                      |++..+++++.+|++++-+|.. +. -|++.+-.+-..-..+.-+++....+   .|+.    .....+-|.+- ...+.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~f----~p~amlgG~lW-~~gN~   70 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLILG---FPPF----YPWAMLGGALW-ATGNI   70 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCcc----eeHHHhhhhhh-hcCce
Confidence            4678899999999999999975 34 67777666655544444444433321   2222    12223334443 45566


Q ss_pred             HHHHhhhccchhhHhhhcch-hHHHHHHHHHH-HccccccccccCCCchhHHHHHHHHhHHHHhhhcccccc--cCccCC
Q 041310           86 VYYTGFSYVSLTVATALSNV-IPSFTFLLAFL-LGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLL--KGFVQK  161 (254)
Q Consensus        86 l~~~~l~~~~~~~a~~l~~~-~Pv~~~lls~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~--~~~~~~  161 (254)
                      +-...++..+.+.+-.+=++ +-+.....+.+ +++++...- .......+|+++.++|..+..+-+.+...  ...++.
T Consensus        71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~  149 (254)
T PF07857_consen   71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET  149 (254)
T ss_pred             eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence            66778888888888877554 44555555544 444333221 11234778888888888877543221100  000011


Q ss_pred             cccccc-ccc-cc-----cCCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-------Cc----chHHHH
Q 041310          162 PLIHIY-DTD-QL-----RHHG------NENWFKGSALILTSHISWSAWLILLATVSKDYP-------AP----LSLNAL  217 (254)
Q Consensus       162 ~~~~~~-~~~-~~-----~~~~------~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-------~~----~~~~~~  217 (254)
                      +...++ ++. ++     .++.      ..+...|..+++.+.+.|+...+=..-..++.+       .+    ++...-
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~G  229 (254)
T PF07857_consen  150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSG  229 (254)
T ss_pred             ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhh
Confidence            111110 000 10     0000      113578999999999999997765444333321       11    222333


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC
Q 041310          218 ICFFASLQSSFVALFLGRNPT  238 (254)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~  238 (254)
                      .++.+++.++.+..+..+.|.
T Consensus       230 IfltSt~~F~~Y~~~~rn~P~  250 (254)
T PF07857_consen  230 IFLTSTVYFVIYCIIKRNKPK  250 (254)
T ss_pred             HHHHHHHHHHHHHHhhcCCCC
Confidence            456677777777776555443

The region concerned is approximately 280 residues long.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=92.17  E-value=0.55  Score=36.72  Aligned_cols=54  Identities=20%  Similarity=0.129  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhC------CCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310          183 GSALILTSHISWSAWLILLATVSKDY------PAPLSLNALICFFASLQSSFVALFLGRN  236 (254)
Q Consensus       183 G~~l~l~aa~~~A~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (254)
                      |.++++.|.++.+++.++.|+..++.      .++..+..+....+.+.+.|...+.|.+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~   60 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP   60 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            56889999999999999999987662      2367788888999999999999988874

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.12  E-value=0.08  Score=47.11  Aligned_cols=116  Identities=17%  Similarity=0.234  Sum_probs=81.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH   83 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~   83 (254)
                      ..|.++.+.+.+.-|.+++.-|....+ ...   ...|              .+.... +.- ++  +....|++-..+.
T Consensus        20 ~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~r--------------a~~gg~-~yl-~~--~~Ww~G~ltm~vG   77 (335)
T KOG2922|consen   20 IIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLR--------------AGEGGY-GYL-KE--PLWWAGMLTMIVG   77 (335)
T ss_pred             eeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hccc--------------ccCCCc-chh-hh--HHHHHHHHHHHHH
Confidence            445566666777777777777765443 110   1111              011111 111 22  2334566655667


Q ss_pred             HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      ...-|.+..+.|++..+.+..+.-+..++++..+++||++..      ..+|.+++++|-.+++
T Consensus        78 ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   78 EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIV  135 (335)
T ss_pred             hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEE
Confidence            778889999999999999999999999999999999999997      8999999999988877

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.43  E-value=3.5  Score=36.78  Aligned_cols=137  Identities=17%  Similarity=0.210  Sum_probs=95.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC-CCCHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERK-----HRP-KLSFAVMAKIFVLA   76 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~g   76 (254)
                      .+||.++....+.=....+.+|+..+. +.+-..++.+-.+++.+.+.......+-.     ..+ .....-+..+.+-+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            357788888888888888888887765 47778888999999888777766543310     001 11223345566667


Q ss_pred             HHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           77 LFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        77 ~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      +++. .-.++-++..+.+++...++....+-..+.+...+++++++++.      ..+|+.+++.|-++=.
T Consensus       236 v~gf-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGF-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHH-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            7764 44567777888888877777774455555555566677778875      9999999999988654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=87.99  E-value=0.44  Score=35.38  Aligned_cols=42  Identities=26%  Similarity=0.498  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310          192 ISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR  235 (254)
Q Consensus       192 ~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (254)
                      ++|+.+.+..|+..++.+ +...+++++..+++ ..+.....++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~   42 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR   42 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc
Confidence            478999999999999887 68999999999998 6666666655

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=87.00  E-value=5.2  Score=34.21  Aligned_cols=109  Identities=13%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhH
Q 041310           32 LNHLVFVVYRHVLAMVLLGPFAYVLERKHR----PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIP  107 (254)
Q Consensus        32 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~P  107 (254)
                      ..-.+..++..+++..+++.+.+..+.+..    ...+.......+..|++.. .-.++--+-++-++++.-+.+..++-
T Consensus       183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv-giSy~saWcvrVtSSTtySMvGALNK  261 (309)
T COG5070         183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV-GISYCSAWCVRVTSSTTYSMVGALNK  261 (309)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh-hhhhccceeEeehhhhHHHHHHHhhh
Confidence            556788899999999988888776543221    1234344556677777763 44567778888899999999988888


Q ss_pred             HHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310          108 SFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus       108 v~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      .-.++.+.+++.|+.+..      ++..+.+++....+-.
T Consensus       262 lp~alaGlvffdap~nf~------si~sillGflsg~iYa  295 (309)
T COG5070         262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA  295 (309)
T ss_pred             ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence            888888999999999986      8999999987766544

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=86.92  E-value=16  Score=32.65  Aligned_cols=136  Identities=16%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CC----CHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKG----LNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-------KL----SFAV   68 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~----~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-------~~----~~~~   68 (254)
                      ..|..+...+.++=|.-|.+++...++.    -+|.....--.-.-.+.++|..+..++....       ..    -.+.
T Consensus       163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            3477788888888888888888887751    2366655544444455556665554443211       11    1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHH
Q 041310           69 MAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIF  146 (254)
Q Consensus        69 ~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  146 (254)
                      ...+.+.|.+. ...-.+.+.-+..|++-..++..-.-=+-+.+++..+.+|+++..      .|.|..++..|+..=
T Consensus       243 ~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            33334444443 233345566666666655555555555777888999999999976      999999999999865

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=83.46  E-value=8.5  Score=33.91  Aligned_cols=191  Identities=10%  Similarity=0.088  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHhc-CCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041310           16 AYGGSNILVKISLEK-GLNH--LVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFS   92 (254)
Q Consensus        16 ~wg~~~v~~K~~~~~-~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~   92 (254)
                      .+=.+...-...... |+.|  +.++..++++-..+-+.-... .+..++..++|   ....++.+- ...+++-..++.
T Consensus        54 ~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~-~~~k~r~iP~r---tY~~la~~t-~gtmGLsn~Slg  128 (367)
T KOG1582|consen   54 LYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL-IQTKRRVIPWR---TYVILAFLT-VGTMGLSNGSLG  128 (367)
T ss_pred             HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe-ecccceecchh---HhhhhHhhh-hhccccCcCccc
Confidence            333444444444332 4664  456666666654332221111 01111122333   233333332 345555566666


Q ss_pred             ccchhhHhhhcc--hhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccc
Q 041310           93 YVSLTVATALSN--VIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTD  170 (254)
Q Consensus        93 ~~~~~~a~~l~~--~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~  170 (254)
                      |.+=-.-.++-.  +.|+++  .+.++-+.|-.+.      ...++.+-..|++...+.+.                   
T Consensus       129 YLNYPtQviFKccKliPVmi--ggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs-------------------  181 (367)
T KOG1582|consen  129 YLNYPTQVIFKCCKLIPVMI--GGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADS-------------------  181 (367)
T ss_pred             cccCcHHHHHHhhhhhhhhh--eeeeeccccccHH------HHHHHHHHHHHHHhhhhccc-------------------
Confidence            654444444433  456554  5778888888886      88999999999998874431                   


Q ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 041310          171 QLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGRNPTLWK  241 (254)
Q Consensus       171 ~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (254)
                         +.+++-+..|..+.-+|-++=|.--.+++|..|.+|. .-.+.++...+|.+.++......++-.+.|.
T Consensus       182 ---~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~  250 (367)
T KOG1582|consen  182 ---QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWT  250 (367)
T ss_pred             ---ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhH
Confidence               1223445789999999999989888888888887764 2345777778888877777776766444443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=83.32  E-value=29  Score=29.89  Aligned_cols=121  Identities=12%  Similarity=0.017  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHH
Q 041310            5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYR-HVLAMVLLGPFAYVLERKHRPK-LSFAVMAKIFVLALFGATI   82 (254)
Q Consensus         5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R-~~~a~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~l   82 (254)
                      .|.++++.++++=|...+.....++++-.|+..--.+ ...+.+..++.....++....+ --.+.+-.....-++..+.
T Consensus       114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~  193 (244)
T PF04142_consen  114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAI  193 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHH
Confidence            5778889999999999999977776633444444444 3444444444333322211111 1112222222222222344


Q ss_pred             HHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHcccccccc
Q 041310           83 HLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT  125 (254)
Q Consensus        83 ~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~  125 (254)
                      ...+--.-+||.+.-.=..-....-+.+.++++.+++.+++..
T Consensus       194 gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~  236 (244)
T PF04142_consen  194 GGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS  236 (244)
T ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence            4455566788988877777788888999999999999999985

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=81.39  E-value=42  Score=30.48  Aligned_cols=180  Identities=13%  Similarity=0.119  Sum_probs=105.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHH
Q 041310            4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR----PKLSFAVMAKIFVLALFG   79 (254)
Q Consensus         4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~   79 (254)
                      ..+.+...++.+.=|+..+-.|...+=.-..+.++  ..+++-+++-.+.....-+..    ...+...+....+.|++-
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv--~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lW   83 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV--QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLW   83 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH--HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHH
Confidence            35788888999999999999998754322233333  444444443333322211110    122334555566677774


Q ss_pred             HHHHHHHHHHhhhccchhhHh-hhcchhHHHHHHHHHHHcccccc--ccccCCCchhHHHHHHHHhHHHHhhhccccccc
Q 041310           80 ATIHLNVYYTGFSYVSLTVAT-ALSNVIPSFTFLLAFLLGMEKVK--ITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLK  156 (254)
Q Consensus        80 ~~l~~~l~~~~l~~~~~~~a~-~l~~~~Pv~~~lls~~~~~e~~~--~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~  156 (254)
                       .+....|=.+++|.+.+... +...+.-++-.++-.++.++ ++  ..+.-.+..++|.+++++|+.++... |..   
T Consensus        84 -GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~---  157 (344)
T PF06379_consen   84 -GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKA-GSM---  157 (344)
T ss_pred             -hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHH-HHh---
Confidence             46677888899998888644 44556666666665544332 11  00111335899999999999998632 210   


Q ss_pred             CccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041310          157 GFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILL  201 (254)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~  201 (254)
                          ++-    ++ + .+.++.+.-.|.++++.|.+.-|++++-.
T Consensus       158 ----Ke~----~~-~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~  192 (344)
T PF06379_consen  158 ----KEK----EL-G-EEAKEFNFKKGLIIAVLSGVMSACFNFGL  192 (344)
T ss_pred             ----hhh----hh-c-cchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                000    00 0 11234566799999999999888887644

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.52
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.5

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.52  E-value=1.5e-06  Score=64.87  Aligned_cols=68  Identities=18%  Similarity=0.258  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310           74 VLALFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT  147 (254)
Q Consensus        74 ~~g~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  147 (254)
                      ..+++...+++.++..++++.+.+.+..+ ..+.|+++++++++++||+++++      +++|+++.++|++++.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            35555567889999999999999999888 89999999999999999999997      9999999999999886

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.50  E-value=1.9e-07  Score=72.38  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310           74 VLALFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF  148 (254)
Q Consensus        74 ~~g~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  148 (254)
                      .++++.+.+++.++..++++.+++.+..+ .++.|++++++++++++|+++++      +++|+++.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            45666678899999999999999999888 89999999999999999999998      99999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00