Citrus Sinensis ID: 041338

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MQGSSVALAPASTPILKRRFCLILSSSSLEPADLAFSRGVSCLQTSRFGSFTPLSARISSSLKCLNQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mqgssvalapastpiLKRRFCLilsssslepadlafsrgvsclqtsrfgsftplsARISSSLKCLNQRYHNLkaragtasvpdsvdetpepsAAIQTLQLGGMFGLWYLLNIYFNIFNkqvlkvfpypttvtaFQFGCGTVMIILMWTLnlyarpkltrsqFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE
Flexible Loop (DISEMBL)
mqgssvalapastpilKRRFCLILSSSSLEPADLAFSRGVSCLQTSRFGSFTPLSARISSSLKCLNQRYHNLKAragtasvpdsvdetPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMAsnvtnqsrnvfskkfmvrke
Low Complexity Region (SEG)
MQGSSVALAPASTPILKRRFCLILSSSSLEPADLAFSRGVSCLQTSRFGSFTPLSARISSSLKCLNQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE
Disordered region (IsUnstruct)
*************PILKRRFCLILSSSSLEPADLAFSRGVSCLQTSRFGSFTPLSARISSSLKCLNQRYHNL*********************AIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNV*****************
Disordered Region (DISOPRED)
************************************************************************************************TLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMV***
Disordered Region (DISEMBL)
*********PASTPILKRRFCLILSSSSLEPADLAFSRGVSCLQTSRFGSFTPLSARISSSLKCLNQRYHNLKAR****************SAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE
Disordered Region (DISPRO)
************T******************************************************************************SAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGSSVALAPASTPILKRRFCLILSSSSLEPADLAFSRGVSCLQTSRFGSFTPLSARISSSLKCLNQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q8H0T6	383	Phosphoenolpyruvate/phosp	yes	no	0.750	0.527	0.673	8e-77
Q8RXN3	408	Phosphoenolpyruvate/phosp	no	no	0.724	0.477	0.625	2e-69
Q84QU8	407	Phosphoenolpyruvate/phosp	yes	no	0.728	0.481	0.633	2e-68
Q69VR7	408	Phosphoenolpyruvate/phosp	no	no	0.646	0.426	0.701	1e-66
P52178	402	Triose phosphate/phosphat	N/A	no	0.691	0.462	0.641	8e-66
Q5VQL3	393	Phosphoenolpyruvate/phosp	no	no	0.669	0.458	0.611	1e-56
Q94B38	388	Glucose-6-phosphate/phosp	no	no	0.747	0.518	0.408	2e-37
Q9ZSR7	410	Triose phosphate/phosphat	no	no	0.639	0.419	0.441	6e-36
P52177	407	Triose phosphate/phosphat	N/A	no	0.724	0.479	0.418	1e-35
P29463	414	Triose phosphate/phosphat	N/A	no	0.643	0.417	0.421	1e-35

>sp|Q8H0T6|PPT2_ARATH Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=PPT2 PE=2 SV=1

 Score =  286 bits (733), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 138/205 (67%), Positives = 168/205 (81%), Gaps = 3/205 (1%)

Query: 66  NQRYHNLKARAGTASVPDSVDETP-EPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV 124
           N R++  K +  +A+VP++V+    E  + ++ L+LGGMFG+WYLLNIY+NIFNKQVL+V
Sbjct: 46  NLRFNGFKLK--SATVPENVEGGDLESGSLVKGLKLGGMFGVWYLLNIYYNIFNKQVLRV 103

Query: 125 FPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLV 184
           +PYP TVTAFQ GCGT+MI +MW L L+ RPK + SQF VI+ LAVAHTLGNLLTN+SL 
Sbjct: 104 YPYPATVTAFQLGCGTLMIAIMWLLKLHPRPKFSPSQFTVIVQLAVAHTLGNLLTNVSLG 163

Query: 185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGF 244
            VNVSFTHTIKAMEPFFTVL + L LGE P++W+  SL+PIV GV+LAS TEA+FNW GF
Sbjct: 164 RVNVSFTHTIKAMEPFFTVLLSVLLLGEWPSLWIVCSLLPIVAGVSLASFTEASFNWIGF 223

Query: 245 CSAMASNVTNQSRNVFSKKFMVRKE 269
           CSAMASNVTNQSRNV SKKFMV K+
Sbjct: 224 CSAMASNVTNQSRNVLSKKFMVGKD 248

Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP), 2-phosphoglycerate and 3-phosphoglycerate.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXN3|PPT1_ARATH Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PPT1 PE=1 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 150/195 (76%)

Query: 75  RAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAF 134
           R    +VP+S +E        + L+LG +F +WYL NIYFNI+NKQVLK    P TVT  
Sbjct: 83  RTAATAVPESAEEGDNSGKLTKVLELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLV 142

Query: 135 QFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTI 194
           QF  G+V+I +MW LNLY RPK++ +Q A ILPLAV HTLGNL TN+SL  V+VSFTHTI
Sbjct: 143 QFAVGSVLITIMWVLNLYKRPKISGAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTI 202

Query: 195 KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTN 254
           KAMEPFF+VL +A+FLGEKPT W+  ++VPIVGGVALAS++E +FNW GF SAMASN+TN
Sbjct: 203 KAMEPFFSVLLSAMFLGEKPTPWVLGAIVPIVGGVALASISEVSFNWAGFSSAMASNLTN 262

Query: 255 QSRNVFSKKFMVRKE 269
           QSRNV SKK MV+K+
Sbjct: 263 QSRNVLSKKVMVKKD 277

Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP), 2-phosphoglycerate, 3-phosphoglycerate and dihydroxyacetone phosphate. Imports PEP to the chloroplast stroma as one substrate of the shikimate pathway, from which aromatic amino acids and a variety of secondary products derive. Required for correct leaf mesophyll cell development and expression of chlorophyll a/b binding protein 3 (CAB3).

Arabidopsis thaliana (taxid: 3702)

>sp|Q84QU8|PPT2_ORYSJ Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT2 PE=2 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/202 (63%), Positives = 150/202 (74%), Gaps = 6/202 (2%)

Query: 68  RYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPY 127
           R+    A AG A   +      E S   +TLQLG +FGLWYL NIYFNI+NKQVLKVFPY
Sbjct: 81  RHVACGAAAGDAKAEE------EESGLAKTLQLGALFGLWYLFNIYFNIYNKQVLKVFPY 134

Query: 128 PTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVN 187
           P  +T  QF  GTV+ + MW   +  RPK++ +Q   ILPLAV HT+GNL TN+SL  V 
Sbjct: 135 PINITTVQFAVGTVVALFMWITGILRRPKISGAQLFAILPLAVVHTMGNLFTNMSLGKVA 194

Query: 188 VSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSA 247
           VSFTHTIKAMEPFF+VL +A+FLGE PT+W+  SL+PIVGGVALASLTEA+FNW GF SA
Sbjct: 195 VSFTHTIKAMEPFFSVLLSAIFLGELPTVWVILSLLPIVGGVALASLTEASFNWAGFWSA 254

Query: 248 MASNVTNQSRNVFSKKFMVRKE 269
           MASNVT QSRNV SKK MV+KE
Sbjct: 255 MASNVTFQSRNVLSKKLMVKKE 276

Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP) and dihydroxyacetone phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69VR7|PPT1_ORYSJ Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT1 PE=2 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/174 (70%), Positives = 141/174 (81%)

Query: 96  QTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARP 155
           +TLQLG +FGLWYL NIYFNI+NKQVLKVFPYP  +T  QF  GTV+ + MW   +  RP
Sbjct: 104 KTLQLGALFGLWYLFNIYFNIYNKQVLKVFPYPINITNVQFAVGTVIALFMWITGILKRP 163

Query: 156 KLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPT 215
           K++ +Q A ILPLA+ HT+GNL TN+SL  V VSFTHTIKAMEPFF+VL +ALFLGE PT
Sbjct: 164 KISGAQLAAILPLAMVHTMGNLFTNMSLGKVAVSFTHTIKAMEPFFSVLLSALFLGEMPT 223

Query: 216 IWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
            ++  SLVPIVGGVALASLTEA+FNW GF SAMASNVT QSRNV SKK MV+KE
Sbjct: 224 PFVVLSLVPIVGGVALASLTEASFNWAGFWSAMASNVTFQSRNVLSKKLMVKKE 277

Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP) and dihydroxyacetone phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P52178|TPT2_BRAOB Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1

 Score =  250 bits (638), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 146/187 (78%), Gaps = 1/187 (0%)

Query: 84  SVDETPEPSAAI-QTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVM 142
           +V E  E S  + + L+LG +F +WYL NIYFNI+NKQVLK    P TVT  QF  G+V+
Sbjct: 85  AVPEEGEGSGKMTKVLELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVL 144

Query: 143 IILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFT 202
           I  MW LNLY RPK++ +Q A ILPLAV HTLGNL TN+SL  V+VSFTHTIKAMEPFF+
Sbjct: 145 ITFMWALNLYKRPKISAAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFS 204

Query: 203 VLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSK 262
           V+ +A+FLGE PT W+  S++PIVGGVALAS+TE +FNW GF SAMASN+TNQSRNV SK
Sbjct: 205 VVLSAMFLGEVPTPWVIGSIIPIVGGVALASVTEVSFNWAGFLSAMASNLTNQSRNVLSK 264

Query: 263 KFMVRKE 269
           K MV+K+
Sbjct: 265 KVMVKKD 271

Mediates the export of fixed carbons from the chloroplasts into the cytosol in the form of triose phosphates.

Brassica oleracea var. botrytis (taxid: 3715)

>sp|Q5VQL3|PPT3_ORYSJ Phosphoenolpyruvate/phosphate translocator 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT3 PE=2 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 131/180 (72%)

Query: 90  EPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTL 149
           E  A  +T QLG M   WYLLNIYFNI+NKQVL+  P+P T+TAFQ   G+ +I LMW L
Sbjct: 85  ERGALAETAQLGAMIVAWYLLNIYFNIYNKQVLQPLPFPYTITAFQLAFGSFVIFLMWAL 144

Query: 150 NLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALF 209
            L+  P+++ SQ A I PLA  H LG + TN+SL  V VSFTHTIKA EPFFTVL +A F
Sbjct: 145 KLHPAPRISISQLAKIAPLAAGHMLGTVFTNMSLSKVAVSFTHTIKASEPFFTVLLSAFF 204

Query: 210 LGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
           LGE P++ +  SLVPIVGGVALASLTE +FNW GF SAMASN+  QSRNV SKK +  +E
Sbjct: 205 LGETPSLLVLGSLVPIVGGVALASLTELSFNWIGFWSAMASNLLYQSRNVLSKKLLGGEE 264

Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP) and dihydroxyacetone phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94B38|GPT2_ARATH Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=2

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 123/203 (60%), Gaps = 2/203 (0%)

Query: 67  QRYHNLKARAGTASVPDSVD-ETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVF 125
           +R   ++A     S P  ++ E P+  +A Q L++G  F  W+ LN+ FNI+NK+VL  F
Sbjct: 64  KREVKVEAYEADRSRPLDINIELPDEQSA-QKLKIGIYFATWWALNVVFNIYNKKVLNAF 122

Query: 126 PYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVT 185
           PYP   +     CG++M+++ W   +   PK     +  + P+AVAHT+G++   +S+  
Sbjct: 123 PYPWLTSTLSLACGSLMMLVSWATRIADAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSK 182

Query: 186 VNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFC 245
           V VSFTH IK+ EP F+VL +  F+GE   + +  SL+PI+GG ALA++TE  FN TGF 
Sbjct: 183 VAVSFTHIIKSGEPAFSVLVSRFFMGETFPLPVYLSLLPIIGGCALAAITELNFNITGFM 242

Query: 246 SAMASNVTNQSRNVFSKKFMVRK 268
            AM SN+    RN+FSKK M  K
Sbjct: 243 GAMISNLAFVFRNIFSKKGMKGK 265

Glucose 6-phosphate (Glc6P) transporter. Transports also inorganic phosphate, 3-phosphoglycerate, triose phosphates and, to a leser extent, phosphoenolpyruvate. Responsible for the transport of Glc6P into plastids of heterotrophic tissues where it can be used as a carbon source for starch biosynthesis, as substrate for fatty acid biosynthesis or as substrate for NADPH generation via the oxidative pentose phosphate pathway (OPPP). Required for dynamic acclimation of photosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSR7|TPT_ARATH Triose phosphate/phosphate translocator TPT, chloroplastic OS=Arabidopsis thaliana GN=TPT PE=2 SV=1

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 106/172 (61%)

Query: 98  LQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKL 157
           L  G  F +WY LN+ FNI NK++   FPYP  V+      G V  ++ W++ L  R  +
Sbjct: 106 LVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPI 165

Query: 158 TRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIW 217
             +   V++P+AV H LG++ +N+S   V VSFTHTIKA+EPFF    +   +G+   I 
Sbjct: 166 DSNLLKVLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFIMGQSIPIT 225

Query: 218 LASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
           L  SL P+V GVA+ASLTE +FNW GF SAM SN++   R++FSKK M   +
Sbjct: 226 LWLSLAPVVLGVAMASLTELSFNWLGFISAMISNISFTYRSIFSKKAMTDMD 277

Triose phosphate/phosphate translocator that transports inorganic phosphate, 3-phosphoglycerate (3-PGA) and triose phosphate. Functions in the export of photoassimilates from chloroplasts during the day. In the light, triose phosphates are exported from the chloroplast stroma in counter exchange with inorganic phosphate (Pi), generated during sucrose biosynthesis in the cytosol. Involved in photosynthetic acclimation, a light response resulting in increased tolerance to high-intensity light.

Arabidopsis thaliana (taxid: 3702)

>sp|P52177|TPT1_BRAOB Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 113/196 (57%), Gaps = 1/196 (0%)

Query: 75  RAGTASVPDSVDETPEP-SAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTA 133
           RA +A   DS  ET          L  G +  +WY LN+ FNI NK++   FPYP  V+ 
Sbjct: 79  RAASAEGGDSAGETKVGFLGKYPWLVTGILLLMWYFLNVIFNILNKKIYNYFPYPYFVSV 138

Query: 134 FQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHT 193
                G V  ++ W++ L  R  +      V++P+AV H +G++ +N+S   V VSFTHT
Sbjct: 139 IHLFVGVVYCLVSWSVGLPKRAPVNSDILKVLIPVAVCHAIGHVTSNVSFAAVAVSFTHT 198

Query: 194 IKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVT 253
           IKA+EPFF    +   LG+   I L  SL P+V GVA+ASLTE +FNW GF SAM SN++
Sbjct: 199 IKALEPFFNASASQFLLGQPIPITLWLSLAPVVLGVAMASLTELSFNWLGFISAMISNIS 258

Query: 254 NQSRNVFSKKFMVRKE 269
              R++FSKK M   +
Sbjct: 259 FTYRSIFSKKAMTDMD 274

Mediates the export of fixed carbons from the chloroplasts into the cytosol in the form of triose phosphates.

Brassica oleracea var. botrytis (taxid: 3715)

>sp|P29463|TPT_SOLTU Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 106/173 (61%)

Query: 97  TLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPK 156
           TL  G  F +WY LN+ FNI NK++   FPYP  V+      G V  ++ W + L  R  
Sbjct: 109 TLTTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWGVGLPKRAP 168

Query: 157 LTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTI 216
           +  +Q  ++ P+A  H LG++ +N+S   V VSFTHT+KA+EPFF    +   LG++  +
Sbjct: 169 IDSTQLKLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQFILGQQIPL 228

Query: 217 WLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
            L  SL P+V GV++ASLTE +FNW GF SAM SN++   R+++SKK M   +
Sbjct: 229 ALWLSLAPVVLGVSMASLTELSFNWLGFTSAMISNISFTYRSIYSKKAMTDMD 281

Mediates the export of fixed carbons from the chloroplasts into the cytosol in the form of triose phosphates.

Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224055543	330	predicted protein [Populus trichocarpa]	0.732	0.596	0.758	8e-82
255560860	406	Triose phosphate/phosphate translocator,	0.944	0.625	0.615	9e-81
296087639	606	unnamed protein product [Vitis vinifera]	0.750	0.333	0.715	1e-78
225452410	401	PREDICTED: phosphoenolpyruvate/phosphate	0.750	0.503	0.715	1e-78
225457009	410	PREDICTED: phosphoenolpyruvate/phosphate	0.832	0.546	0.633	4e-78
449450201	396	PREDICTED: phosphoenolpyruvate/phosphate	0.710	0.482	0.717	2e-77
147811544	777	hypothetical protein VITISV_033584 [Viti	0.750	0.259	0.668	1e-75
21537050	382	putative phosphate/phosphoenolpyruvate t	0.750	0.528	0.673	4e-75
18395855	383	phosphoenolpyruvate (pep)/phosphate tran	0.750	0.527	0.673	5e-75
6016714	380	putative phosphate/phosphoenolpyruvate t	0.750	0.531	0.673	7e-75

>gi|224055543|ref|XP_002298531.1| predicted protein [Populus trichocarpa] gi|222845789|gb|EEE83336.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 151/199 (75%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 71  NLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTT 130
           ++K RA  ASVPDS  E  + S A +T+QLG MFG+WYLLNIYFNIFNKQVLKV+P+P T
Sbjct: 2   SIKVRA--ASVPDSTGEFEKSSDAARTMQLGAMFGIWYLLNIYFNIFNKQVLKVYPFPAT 59

Query: 131 VTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSF 190
           +TAFQ GCGTVMII+MW LNL  RPKLTR Q   ILPLAVAHT GNLLTN+SL  V VSF
Sbjct: 60  ITAFQVGCGTVMIIIMWALNLCNRPKLTRPQILAILPLAVAHTFGNLLTNVSLGKVAVSF 119

Query: 191 THTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMAS 250
           THTIKA+EPFFTVLFAALFLGE P  W+ SSLVP+VGGV LASLTE +FNW GFCSAMAS
Sbjct: 120 THTIKALEPFFTVLFAALFLGETPAFWVLSSLVPLVGGVGLASLTEVSFNWIGFCSAMAS 179

Query: 251 NVTNQSRNVFSKKFMVRKE 269
           NVTNQSRNVFSKK MV KE
Sbjct: 180 NVTNQSRNVFSKKLMVNKE 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560860|ref|XP_002521443.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis] gi|223539342|gb|EEF40933.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 163/265 (61%), Positives = 196/265 (73%), Gaps = 11/265 (4%)

Query: 12  STPILKRRFCLILSS----SSLEPADLAFS--RGVSCLQTSRFGSFTPLSARISSSLKCL 65
           STP+LK +  L  +S    +S  P  +  S   G+ C + +   S+     +  +S  C 
Sbjct: 10  STPLLKPQKSLYANSKPRPTSFRPLQIHSSCYNGIPC-RNAYLHSYRCFKTQDPTSFFC- 67

Query: 66  NQRYHNLKA-RAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV 124
              Y+N ++ +   ASVP+S  +  E S   + +QL  MFG+WYLLNIY+NIFNKQVLKV
Sbjct: 68  -SYYNNNRSFKVYAASVPESTSQN-ETSDLARIIQLAAMFGIWYLLNIYYNIFNKQVLKV 125

Query: 125 FPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLV 184
           +P+P TVTAFQ GCGT+MII+ W LNLY +PKLTRSQF  ILPLAVAHT+GNLLTNISL 
Sbjct: 126 YPFPATVTAFQCGCGTLMIIITWALNLYHKPKLTRSQFTAILPLAVAHTMGNLLTNISLG 185

Query: 185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGF 244
            V VSFTHTIKAMEPFFTVLFA+LFLGE+P+ W+ SSLVPIVGGVALAS TE++FN TGF
Sbjct: 186 KVAVSFTHTIKAMEPFFTVLFASLFLGERPSFWVLSSLVPIVGGVALASFTESSFNLTGF 245

Query: 245 CSAMASNVTNQSRNVFSKKFMVRKE 269
           CSAMASNVTNQSRNV SKKFMV KE
Sbjct: 246 CSAMASNVTNQSRNVLSKKFMVSKE 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087639|emb|CBI34895.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 170/204 (83%), Gaps = 2/204 (0%)

Query: 66  NQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVF 125
           N R+   K RA  +SVP++ +ET + S     LQLG MF +WYLLNIYFNIFNKQ+LKV+
Sbjct: 271 NPRFSGFKFRA--SSVPENAEETEKSSNLGGILQLGSMFAIWYLLNIYFNIFNKQILKVY 328

Query: 126 PYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVT 185
           P+P TVTAFQFGCGTV++ILMW  NLY RPK+++SQF+ IL LAV HT+GNLLTN+SL  
Sbjct: 329 PFPATVTAFQFGCGTVLVILMWAFNLYKRPKISKSQFSGILILAVTHTMGNLLTNLSLRK 388

Query: 186 VNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFC 245
           V VSFTHTIKAMEPFFTV+ A LFLGEKPT+ + SSLVPIVGGVALAS TE++FNWTGF 
Sbjct: 389 VAVSFTHTIKAMEPFFTVVLATLFLGEKPTLPIVSSLVPIVGGVALASFTESSFNWTGFW 448

Query: 246 SAMASNVTNQSRNVFSKKFMVRKE 269
           SAMASN+TNQSRNVFSKKFMV KE
Sbjct: 449 SAMASNLTNQSRNVFSKKFMVNKE 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452410|ref|XP_002276496.1| PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Vitis vinifera]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 170/204 (83%), Gaps = 2/204 (0%)

Query: 66  NQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVF 125
           N R+   K RA  +SVP++ +ET + S     LQLG MF +WYLLNIYFNIFNKQ+LKV+
Sbjct: 66  NPRFSGFKFRA--SSVPENAEETEKSSNLGGILQLGSMFAIWYLLNIYFNIFNKQILKVY 123

Query: 126 PYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVT 185
           P+P TVTAFQFGCGTV++ILMW  NLY RPK+++SQF+ IL LAV HT+GNLLTN+SL  
Sbjct: 124 PFPATVTAFQFGCGTVLVILMWAFNLYKRPKISKSQFSGILILAVTHTMGNLLTNLSLRK 183

Query: 186 VNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFC 245
           V VSFTHTIKAMEPFFTV+ A LFLGEKPT+ + SSLVPIVGGVALAS TE++FNWTGF 
Sbjct: 184 VAVSFTHTIKAMEPFFTVVLATLFLGEKPTLPIVSSLVPIVGGVALASFTESSFNWTGFW 243

Query: 246 SAMASNVTNQSRNVFSKKFMVRKE 269
           SAMASN+TNQSRNVFSKKFMV KE
Sbjct: 244 SAMASNLTNQSRNVFSKKFMVNKE 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457009|ref|XP_002282424.1| PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic [Vitis vinifera] gi|297733768|emb|CBI15015.3| unnamed protein product [Vitis vinifera]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 147/232 (63%), Positives = 180/232 (77%), Gaps = 8/232 (3%)

Query: 38  RGVSCLQTSRFGSFTPLSARISSSLKCLNQRYHNLKARAGTASVPDSVDETPEPSAAIQT 97
           R  + L +SRFG+F       S+     ++R  +L  RA  +SVP+S  E+ +    +QT
Sbjct: 58  RTPAALSSSRFGAFG------SAPYLVEDRRRGDLTVRA--SSVPESAGESEKSGNLVQT 109

Query: 98  LQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKL 157
           LQLG +FGLWYL NIYFNI+NKQVLKV+P+P TVT  QF  GTV++ILMW LNLY RPK+
Sbjct: 110 LQLGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTVVQFAVGTVLVILMWGLNLYKRPKI 169

Query: 158 TRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIW 217
           + SQ   ILPLAV HTLGNL TN+SL  V+VSFTHTIKAMEPFF+V+ +A+FLGE PTIW
Sbjct: 170 SSSQLVAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVVLSAMFLGEFPTIW 229

Query: 218 LASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
           + SSL+PIVGGVALAS TEA+FNW+GF SAMASN+TNQSRNV SKKFM++KE
Sbjct: 230 VLSSLLPIVGGVALASATEASFNWSGFWSAMASNLTNQSRNVLSKKFMIKKE 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450201|ref|XP_004142852.1| PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Cucumis sativus]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 161/191 (84%)

Query: 79  ASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGC 138
           +SVP+S  E  E    +Q L+LG MFG+WYLLNIY+NIFNKQVLK FP+PTTVTAFQFGC
Sbjct: 73  SSVPESAGEGVESVDLVQNLRLGAMFGIWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGC 132

Query: 139 GTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAME 198
           GT+++ LMW LN + RPK++ SQFA ILPLAVAHT+GN+LTN+SL  V VSFTHTIKAME
Sbjct: 133 GTIIVNLMWALNFHHRPKISSSQFATILPLAVAHTMGNILTNVSLGRVAVSFTHTIKAME 192

Query: 199 PFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRN 258
           PFFTVL +ALFL E+P+ W+  SLVP+VGGVALAS TEA+FNW GF SAMASN+TNQSRN
Sbjct: 193 PFFTVLLSALFLAERPSFWVVFSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRN 252

Query: 259 VFSKKFMVRKE 269
           +FSKK MV KE
Sbjct: 253 IFSKKLMVHKE 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811544|emb|CAN61088.1| hypothetical protein VITISV_033584 [Vitis vinifera]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/217 (66%), Positives = 169/217 (77%), Gaps = 15/217 (6%)

Query: 66  NQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQ----- 120
           N R+   K RA  +SVP++ +ET + S     LQLG MF +WY LNIYFNIFNKQ     
Sbjct: 469 NPRFSGFKFRA--SSVPENAEETEKSSNLGGILQLGSMFAIWYXLNIYFNIFNKQREIRE 526

Query: 121 --------VLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAH 172
                   +LKV+P+P TVTAFQFGCGTV++ILMW  NLY RPK+++SQF+ IL LAV H
Sbjct: 527 HQCCFLLQILKVYPFPATVTAFQFGCGTVLVILMWAFNLYKRPKISKSQFSGILILAVTH 586

Query: 173 TLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALA 232
           T+GNLLTN+SL  V VSFTHTIKAMEPFFTV+ A LFLGEKPT+ + SSLVPIVGGVALA
Sbjct: 587 TMGNLLTNLSLRKVAVSFTHTIKAMEPFFTVVLATLFLGEKPTLPIVSSLVPIVGGVALA 646

Query: 233 SLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
           S TE++FNWTGF SAMASN+TNQSRNVFSKKFMV KE
Sbjct: 647 SFTESSFNWTGFWSAMASNLTNQSRNVFSKKFMVNKE 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537050|gb|AAM61391.1| putative phosphate/phosphoenolpyruvate translocator [Arabidopsis thaliana]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 138/205 (67%), Positives = 168/205 (81%), Gaps = 3/205 (1%)

Query: 66  NQRYHNLKARAGTASVPDSVDETP-EPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV 124
           N R++  K +  +A+VP++V+    E  + ++ L+LGGMFG+WYLLNIY+NIFNKQVL+V
Sbjct: 45  NLRFNGFKLK--SATVPENVEGGDLESGSLVKGLKLGGMFGVWYLLNIYYNIFNKQVLRV 102

Query: 125 FPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLV 184
           +PYP TVTAFQ GCGT+MI +MW L L+ RPK + SQF VI+ LAVAHTLGNLLTN+SL 
Sbjct: 103 YPYPATVTAFQLGCGTLMIAIMWLLKLHPRPKFSPSQFTVIVQLAVAHTLGNLLTNVSLG 162

Query: 185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGF 244
            VNVSFTHTIKAMEPFFTVL + L LGE P++W+  SL+PIV GV+LAS TEA+FNW GF
Sbjct: 163 RVNVSFTHTIKAMEPFFTVLLSVLLLGEWPSLWIVCSLLPIVAGVSLASFTEASFNWIGF 222

Query: 245 CSAMASNVTNQSRNVFSKKFMVRKE 269
           CSAMASNVTNQSRNV SKKFMV K+
Sbjct: 223 CSAMASNVTNQSRNVLSKKFMVGKD 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395855|ref|NP_566142.1| phosphoenolpyruvate (pep)/phosphate translocator 2 [Arabidopsis thaliana] gi|75151823|sp|Q8H0T6.1|PPT2_ARATH RecName: Full=Phosphoenolpyruvate/phosphate translocator 2, chloroplastic; Short=AtPPT2; Flags: Precursor gi|25083416|gb|AAN72072.1| putative phosphate/phosphoenolpyruvate translocator [Arabidopsis thaliana] gi|30725606|gb|AAP37825.1| At3g01550 [Arabidopsis thaliana] gi|332640166|gb|AEE73687.1| phosphoenolpyruvate (pep)/phosphate translocator 2 [Arabidopsis thaliana]

 Score =  286 bits (733), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 138/205 (67%), Positives = 168/205 (81%), Gaps = 3/205 (1%)

Query: 66  NQRYHNLKARAGTASVPDSVDETP-EPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV 124
           N R++  K +  +A+VP++V+    E  + ++ L+LGGMFG+WYLLNIY+NIFNKQVL+V
Sbjct: 46  NLRFNGFKLK--SATVPENVEGGDLESGSLVKGLKLGGMFGVWYLLNIYYNIFNKQVLRV 103

Query: 125 FPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLV 184
           +PYP TVTAFQ GCGT+MI +MW L L+ RPK + SQF VI+ LAVAHTLGNLLTN+SL 
Sbjct: 104 YPYPATVTAFQLGCGTLMIAIMWLLKLHPRPKFSPSQFTVIVQLAVAHTLGNLLTNVSLG 163

Query: 185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGF 244
            VNVSFTHTIKAMEPFFTVL + L LGE P++W+  SL+PIV GV+LAS TEA+FNW GF
Sbjct: 164 RVNVSFTHTIKAMEPFFTVLLSVLLLGEWPSLWIVCSLLPIVAGVSLASFTEASFNWIGF 223

Query: 245 CSAMASNVTNQSRNVFSKKFMVRKE 269
           CSAMASNVTNQSRNV SKKFMV K+
Sbjct: 224 CSAMASNVTNQSRNVLSKKFMVGKD 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6016714|gb|AAF01540.1|AC009325_10 putative phosphate/phosphoenolpyruvate translocator [Arabidopsis thaliana]

 Score =  286 bits (732), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 138/205 (67%), Positives = 168/205 (81%), Gaps = 3/205 (1%)

Query: 66  NQRYHNLKARAGTASVPDSVDETP-EPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV 124
           N R++  K +  +A+VP++V+    E  + ++ L+LGGMFG+WYLLNIY+NIFNKQVL+V
Sbjct: 46  NLRFNGFKLK--SATVPENVEGGDLESGSLVKGLKLGGMFGVWYLLNIYYNIFNKQVLRV 103

Query: 125 FPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLV 184
           +PYP TVTAFQ GCGT+MI +MW L L+ RPK + SQF VI+ LAVAHTLGNLLTN+SL 
Sbjct: 104 YPYPATVTAFQLGCGTLMIAIMWLLKLHPRPKFSPSQFTVIVQLAVAHTLGNLLTNVSLG 163

Query: 185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGF 244
            VNVSFTHTIKAMEPFFTVL + L LGE P++W+  SL+PIV GV+LAS TEA+FNW GF
Sbjct: 164 RVNVSFTHTIKAMEPFFTVLLSVLLLGEWPSLWIVCSLLPIVAGVSLASFTEASFNWIGF 223

Query: 245 CSAMASNVTNQSRNVFSKKFMVRKE 269
           CSAMASNVTNQSRNV SKKFMV K+
Sbjct: 224 CSAMASNVTNQSRNVLSKKFMVGKD 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2084203	383	PPT2 "phosphoenolpyruvate (pep	0.750	0.527	0.673	2.3e-71
TAIR|locus:2145944	408	CUE1 "CAB UNDEREXPRESSED 1" [A	0.992	0.654	0.523	8.5e-65
UNIPROTKB|Q84QU8	407	PPT2 "Phosphoenolpyruvate/phos	0.706	0.466	0.659	2.6e-63
UNIPROTKB|Q69VR7	408	PPT1 "Phosphoenolpyruvate/phos	0.724	0.477	0.647	4.8e-62
UNIPROTKB|Q5VQL3	393	PPT3 "Phosphoenolpyruvate/phos	0.821	0.562	0.541	3.4e-54
TAIR|locus:2036778	388	GPT2 "glucose-6-phosphate/phos	0.784	0.543	0.400	2.4e-37
TAIR|locus:2161423	415	APE2 "ACCLIMATION OF PHOTOSYNT	0.944	0.612	0.368	4.9e-37
TAIR|locus:2151381	417	AT5G17630 "AT5G17630" [Arabido	0.769	0.496	0.4	2.7e-36
TAIR|locus:2160175	388	GPT1 "glucose 6-phosphate/phos	0.884	0.613	0.376	9.2e-36
FB|FBgn0031183	373	CG14621 [Drosophila melanogast	0.576	0.415	0.369	4.8e-23

TAIR|locus:2084203 PPT2 "phosphoenolpyruvate (pep)/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 138/205 (67%), Positives = 167/205 (81%)

Query:    66 NQRYHNLKARAGTASVPDSVDETP-EPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV 124
             N R++  K ++ T  VP++V+    E  + ++ L+LGGMFG+WYLLNIY+NIFNKQVL+V
Sbjct:    46 NLRFNGFKLKSAT--VPENVEGGDLESGSLVKGLKLGGMFGVWYLLNIYYNIFNKQVLRV 103

Query:   125 FPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLV 184
             +PYP TVTAFQ GCGT+MI +MW L L+ RPK + SQF VI+ LAVAHTLGNLLTN+SL 
Sbjct:   104 YPYPATVTAFQLGCGTLMIAIMWLLKLHPRPKFSPSQFTVIVQLAVAHTLGNLLTNVSLG 163

Query:   185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGF 244
              VNVSFTHTIKAMEPFFTVL + L LGE P++W+  SL+PIV GV+LAS TEA+FNW GF
Sbjct:   164 RVNVSFTHTIKAMEPFFTVLLSVLLLGEWPSLWIVCSLLPIVAGVSLASFTEASFNWIGF 223

Query:   245 CSAMASNVTNQSRNVFSKKFMVRKE 269
             CSAMASNVTNQSRNV SKKFMV K+
Sbjct:   224 CSAMASNVTNQSRNVLSKKFMVGKD 248

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015297 "antiporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA

GO:0015121 "phosphoenolpyruvate:phosphate antiporter activity" evidence=IDA

GO:0015713 "phosphoglycerate transport" evidence=IDA

GO:0015714 "phosphoenolpyruvate transport" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2145944 CUE1 "CAB UNDEREXPRESSED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 146/279 (52%), Positives = 188/279 (67%)

Query:     1 MQGSSV-ALAPASTPILK-RRFCLILS--SSSLEPADLAFSRGVSCLQT-SR-----FGS 50
             MQ S+V +L+P S P+LK RR  L     +++   +DL  S  V  + + SR       S
Sbjct:     1 MQSSAVFSLSP-SLPLLKPRRLSLRHHPITTAASSSDLNVSPNVVSIPSLSRRSWRLASS 59

Query:    51 FTPLSARISSSLKCLNQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLL 110
              +PL A  S     ++      + R    +VP+S +E        + L+LG +F +WYL 
Sbjct:    60 DSPLRAW-SGVPSPISHSLDTNRFRTAATAVPESAEEGDNSGKLTKVLELGLLFAMWYLF 118

Query:   111 NIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAV 170
             NIYFNI+NKQVLK    P TVT  QF  G+V+I +MW LNLY RPK++ +Q A ILPLAV
Sbjct:   119 NIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITIMWVLNLYKRPKISGAQLAAILPLAV 178

Query:   171 AHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVA 230
              HTLGNL TN+SL  V+VSFTHTIKAMEPFF+VL +A+FLGEKPT W+  ++VPIVGGVA
Sbjct:   179 VHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVLLSAMFLGEKPTPWVLGAIVPIVGGVA 238

Query:   231 LASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
             LAS++E +FNW GF SAMASN+TNQSRNV SKK MV+K+
Sbjct:   239 LASISEVSFNWAGFSSAMASNLTNQSRNVLSKKVMVKKD 277

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015297 "antiporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009528 "plastid inner membrane" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA

GO:0015121 "phosphoenolpyruvate:phosphate antiporter activity" evidence=IDA

GO:0015713 "phosphoglycerate transport" evidence=IDA

GO:0015714 "phosphoenolpyruvate transport" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q84QU8 PPT2 "Phosphoenolpyruvate/phosphate translocator 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 126/191 (65%), Positives = 148/191 (77%)

Query:    79 ASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGC 138
             A+  D+  E  E   A +TLQLG +FGLWYL NIYFNI+NKQVLKVFPYP  +T  QF  
Sbjct:    87 AAAGDAKAEEEESGLA-KTLQLGALFGLWYLFNIYFNIYNKQVLKVFPYPINITTVQFAV 145

Query:   139 GTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAME 198
             GTV+ + MW   +  RPK++ +Q   ILPLAV HT+GNL TN+SL  V VSFTHTIKAME
Sbjct:   146 GTVVALFMWITGILRRPKISGAQLFAILPLAVVHTMGNLFTNMSLGKVAVSFTHTIKAME 205

Query:   199 PFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRN 258
             PFF+VL +A+FLGE PT+W+  SL+PIVGGVALASLTEA+FNW GF SAMASNVT QSRN
Sbjct:   206 PFFSVLLSAIFLGELPTVWVILSLLPIVGGVALASLTEASFNWAGFWSAMASNVTFQSRN 265

Query:   259 VFSKKFMVRKE 269
             V SKK MV+KE
Sbjct:   266 VLSKKLMVKKE 276

GO:0009670 "triose-phosphate:phosphate antiporter activity" evidence=IDA

GO:0015121 "phosphoenolpyruvate:phosphate antiporter activity" evidence=IDA

GO:0015714 "phosphoenolpyruvate transport" evidence=IDA

GO:0035436 "triose phosphate transmembrane transport" evidence=IDA

UNIPROTKB|Q69VR7 PPT1 "Phosphoenolpyruvate/phosphate translocator 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 127/196 (64%), Positives = 147/196 (75%)

Query:    74 ARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTA 133
             A A TA+         E     +TLQLG +FGLWYL NIYFNI+NKQVLKVFPYP  +T 
Sbjct:    83 AVAATAAAAGEAG-AEEGGGLAKTLQLGALFGLWYLFNIYFNIYNKQVLKVFPYPINITN 141

Query:   134 FQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHT 193
              QF  GTV+ + MW   +  RPK++ +Q A ILPLA+ HT+GNL TN+SL  V VSFTHT
Sbjct:   142 VQFAVGTVIALFMWITGILKRPKISGAQLAAILPLAMVHTMGNLFTNMSLGKVAVSFTHT 201

Query:   194 IKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVT 253
             IKAMEPFF+VL +ALFLGE PT ++  SLVPIVGGVALASLTEA+FNW GF SAMASNVT
Sbjct:   202 IKAMEPFFSVLLSALFLGEMPTPFVVLSLVPIVGGVALASLTEASFNWAGFWSAMASNVT 261

Query:   254 NQSRNVFSKKFMVRKE 269
              QSRNV SKK MV+KE
Sbjct:   262 FQSRNVLSKKLMVKKE 277

GO:0009670 "triose-phosphate:phosphate antiporter activity" evidence=IDA

GO:0015121 "phosphoenolpyruvate:phosphate antiporter activity" evidence=IDA

GO:0015714 "phosphoenolpyruvate transport" evidence=IDA

GO:0035436 "triose phosphate transmembrane transport" evidence=IDA

UNIPROTKB|Q5VQL3 PPT3 "Phosphoenolpyruvate/phosphate translocator 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 123/227 (54%), Positives = 148/227 (65%)

Query:    49 GSFTPLSARISS--SLKCLNQ-RYHNLKARAGTASVP-DSVDETP--EPSAAIQTLQLGG 102
             G+  PL  R     SL  L+  R    +  A  A +P D  D     E  A  +T QLG 
Sbjct:    38 GAALPLRVRGGQLMSLPLLSGGRAVTARVAAAEAPLPADDADAAAGRERGALAETAQLGA 97

Query:   103 MFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQF 162
             M   WYLLNIYFNI+NKQVL+  P+P T+TAFQ   G+ +I LMW L L+  P+++ SQ 
Sbjct:    98 MIVAWYLLNIYFNIYNKQVLQPLPFPYTITAFQLAFGSFVIFLMWALKLHPAPRISISQL 157

Query:   163 AVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSL 222
             A I PLA  H LG + TN+SL  V VSFTHTIKA EPFFTVL +A FLGE P++ +  SL
Sbjct:   158 AKIAPLAAGHMLGTVFTNMSLSKVAVSFTHTIKASEPFFTVLLSAFFLGETPSLLVLGSL 217

Query:   223 VPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
             VPIVGGVALASLTE +FNW GF SAMASN+  QSRNV SKK +  +E
Sbjct:   218 VPIVGGVALASLTELSFNWIGFWSAMASNLLYQSRNVLSKKLLGGEE 264

GO:0015121 "phosphoenolpyruvate:phosphate antiporter activity" evidence=IDA

GO:0015714 "phosphoenolpyruvate transport" evidence=IDA

GO:0035436 "triose phosphate transmembrane transport" evidence=IDA

GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IDA

TAIR|locus:2036778 GPT2 "glucose-6-phosphate/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 87/217 (40%), Positives = 128/217 (58%)

Query:    53 PLSARISSSLKCLNQRYHNLKARAGTASVPDSVD-ETPEPSAAIQTLQLGGMFGLWYLLN 111
             PL    +S+ K    R   ++A     S P  ++ E P+  +A Q L++G  F  W+ LN
Sbjct:    54 PLHISSASNFK----REVKVEAYEADRSRPLDINIELPDEQSA-QKLKIGIYFATWWALN 108

Query:   112 IYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVA 171
             + FNI+NK+VL  FPYP   +     CG++M+++ W   +   PK     +  + P+AVA
Sbjct:   109 VVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLVSWATRIADAPKTDLEFWKTLFPVAVA 168

Query:   172 HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVAL 231
             HT+G++   +S+  V VSFTH IK+ EP F+VL +  F+GE   + +  SL+PI+GG AL
Sbjct:   169 HTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFFMGETFPLPVYLSLLPIIGGCAL 228

Query:   232 ASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRK 268
             A++TE  FN TGF  AM SN+    RN+FSKK M  K
Sbjct:   229 AAITELNFNITGFMGAMISNLAFVFRNIFSKKGMKGK 265

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015152 "glucose-6-phosphate transmembrane transporter activity" evidence=ISS;IDA

GO:0015297 "antiporter activity" evidence=ISS

GO:0015712 "hexose phosphate transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA

GO:0015713 "phosphoglycerate transport" evidence=IDA

GO:0015714 "phosphoenolpyruvate transport" evidence=IDA

GO:0015760 "glucose-6-phosphate transport" evidence=IDA

GO:0035436 "triose phosphate transmembrane transport" evidence=IDA

GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0009643 "photosynthetic acclimation" evidence=IMP

GO:0010109 "regulation of photosynthesis" evidence=IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2161423 APE2 "ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 98/266 (36%), Positives = 143/266 (53%)

Query:     6 VALAPASTPI--LKRRFCLILSSS-SLEPADLAFSRGVSCLQTSRFGSFTPLSARISSSL 62
             V +     PI  + R+F    SSS S++P       G + + + R     P+    SS++
Sbjct:    14 VGIPKLRRPIGAIHRQFSTASSSSFSVKPIG-GIGEGANLI-SGR--QLRPILLLDSSAI 69

Query:    63 KCLNQRYHNLKARAGTASVPDSVDETPEPSAA-IQTLQLGGMFGLWYLLNIYFNIFNKQV 121
                 +R      +A  A   D+  +      A    L  G  F +WY LN+ FNI NK++
Sbjct:    70 NGGEKREILKPVKAAAAEGGDTAGDAKVGFLAKYPWLVTGFFFFMWYFLNVIFNILNKKI 129

Query:   122 LKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNI 181
                FPYP  V+      G V  ++ W++ L  R  +  +   V++P+AV H LG++ +N+
Sbjct:   130 YNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPIDSNLLKVLIPVAVCHALGHVTSNV 189

Query:   182 SLVTVNVSFTHTIKAMEPFFTVLFAALFLGEK-P-TIWLASSLVPIVGGVALASLTEATF 239
             S   V VSFTHTIKA+EPFF    +   +G+  P T+WL  SL P+V GVA+ASLTE +F
Sbjct:   190 SFAAVAVSFTHTIKALEPFFNAAASQFIMGQSIPITLWL--SLAPVVLGVAMASLTELSF 247

Query:   240 NWTGFCSAMASNVTNQSRNVFSKKFM 265
             NW GF SAM SN++   R++FSKK M
Sbjct:   248 NWLGFISAMISNISFTYRSIFSKKAM 273

GO:0005215 "transporter activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015297 "antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA

GO:0015713 "phosphoglycerate transport" evidence=IDA

GO:0015717 "triose phosphate transport" evidence=IMP

GO:0035436 "triose phosphate transmembrane transport" evidence=IDA

GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IMP;IDA

GO:0009643 "photosynthetic acclimation" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2151381 AT5G17630 "AT5G17630" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 86/215 (40%), Positives = 131/215 (60%)

Query:    54 LSARISSSLKCLNQRYHNLKARAGTASVPDS---VDETPEPSAAIQTLQLGGMFGLWYLL 110
             LS     S    +++  ++ A   + S PD    + E  +     +TLQLG +FGLWY  
Sbjct:    63 LSLTNPESSSGFSRKPRSIAAVGSSDSNPDEKSDLGEAEKKEKKAKTLQLGIVFGLWYFQ 122

Query:   111 NIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAV 170
             NI FNIFNK+ L VFPYP  + +FQ   G++ ++++W+  LY  PK+++     +L  A+
Sbjct:   123 NIVFNIFNKKALNVFPYPWLLASFQLFAGSIWMLVLWSFKLYPCPKISKPFIIALLGPAL 182

Query:   171 AHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEK-P-TIWLASSLVPIVGG 228
              HT+G++   +S   V VSFTH IK+ EP F+V+F++L LG+  P  +WL  S++PIV G
Sbjct:   183 FHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVIFSSL-LGDSYPLAVWL--SILPIVMG 239

Query:   229 VALASLTEATFNWTGFCSAMASNVTNQSRNVFSKK 263
              +LA++TE +FN  G   AM SNV    RN++SK+
Sbjct:   240 CSLAAVTEVSFNLGGLSGAMISNVGFVLRNIYSKR 274

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015297 "antiporter activity" evidence=ISS

GO:0015712 "hexose phosphate transport" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA

GO:0015713 "phosphoglycerate transport" evidence=IDA

GO:0035436 "triose phosphate transmembrane transport" evidence=IDA

GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2160175 GPT1 "glucose 6-phosphate/phosphate translocator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 94/250 (37%), Positives = 138/250 (55%)

Query:    26 SSSL--EPADLAFSRGVSCLQTSRFGSFTPLSARISSSLKCLNQ--RYHNLKA-RAGTAS 80
             SSSL   P  L+F       + +      PL   +SSSL+  +   R    +A R+    
Sbjct:    21 SSSLGRSPVSLSFP-STELPKRTVLAVSKPL--HLSSSLRAKSPVVRCEAYEADRSEPHP 77

Query:    81 VPDSVDETPEPSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGT 140
             + D        S A + L++G  F  W+ LN+ FNI+NK+VL  +PYP   +      G+
Sbjct:    78 IGDDAAAAETKSEAAKKLKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGS 137

Query:   141 VMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPF 200
             +M+++ W + +   PK     +  + P+AVAHT+G++   +S+  V VSFTH IK+ EP 
Sbjct:   138 LMMLISWAVGIVETPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPA 197

Query:   201 FTVLFAALFLGEK-PT-IWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRN 258
             F+VL +   LGE  PT ++L  SL+PI+GG AL++LTE  FN  GF  AM SN+    RN
Sbjct:   198 FSVLVSRFILGETFPTSVYL--SLIPIIGGCALSALTELNFNMIGFMGAMISNLAFVFRN 255

Query:   259 VFSKKFMVRK 268
             +FSKK M  K
Sbjct:   256 IFSKKGMKGK 265

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015152 "glucose-6-phosphate transmembrane transporter activity" evidence=ISS;IDA

GO:0015297 "antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0007033 "vacuole organization" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA

GO:0015713 "phosphoglycerate transport" evidence=IDA

GO:0015714 "phosphoenolpyruvate transport" evidence=IDA

GO:0015760 "glucose-6-phosphate transport" evidence=IDA

GO:0034389 "lipid particle organization" evidence=IMP

GO:0035436 "triose phosphate transmembrane transport" evidence=IDA

GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP;RCA

GO:0009790 "embryo development" evidence=IMP

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006863 "purine nucleobase transport" evidence=RCA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0031183 CG14621 [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 61/165 (36%), Positives = 96/165 (58%)

Query:   107 WYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVM----IILMWTLNLYARPKLTRSQF 162
             WY+++   N+  K VL  FP+P TVT  Q  C   +       +W +  Y    + R  +
Sbjct:    21 WYVISSSNNVIGKMVLNEFPFPMTVTLVQL-CSITLYSGPFFNLWRIRKYQ--DIPRPYY 77

Query:   163 -AVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEK-PTIWLAS 220
               +I+PLA+   L ++ ++ISL  V VS+ HT+KA  P FTV+   +F GEK PT+ +  
Sbjct:    78 YRLIVPLALGKLLASVTSHISLWKVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTL-VYL 136

Query:   221 SLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFM 265
             SL+PI+ GV +A++TE +F+  G  SA+ S +    +N+FSKK +
Sbjct:   137 SLLPIITGVGIATVTEISFDMMGLISALISTMGFSMQNIFSKKVL 181

GO:0008524 "glucose 6-phosphate:phosphate antiporter activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.2492.1 hypothetical protein (330 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
TIGR00817	302	TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate	1e-65
PTZ00343	350	PTZ00343, PTZ00343, triose or hexose phosphate/pho	4e-39
pfam00892	126	pfam00892, EamA, EamA-like transporter family	4e-12
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	2e-04
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	6e-04

>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator

 Score =  206 bits (525), Expect = 1e-65
 Identities = 93/171 (54%), Positives = 123/171 (71%)

Query: 98  LQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKL 157
           LQ G +FGLWY LN+YFNI+NK++L VFPYP   T      G++  +L W+  L  R K+
Sbjct: 1   LQTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKI 60

Query: 158 TRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIW 217
           + +   ++LP+A+ HT+G++ +N+SL  V VSFTHTIKAMEPFF+V+ +A FLG++    
Sbjct: 61  SSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST 120

Query: 218 LASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRK 268
           L  SL+PIVGGVALAS TE +FNW GF SAM SN+T  SRN+FSKK M  K
Sbjct: 121 LWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIK 171

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302

>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional

 Score =  139 bits (351), Expect = 4e-39
 Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 2/180 (1%)

Query: 92  SAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNL 151
           S      +L  +F  WY LN+ + + NK  L + P P T+++ Q   G +  +L W    
Sbjct: 42  SFPNFKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGF 101

Query: 152 YARPKL--TRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALF 209
              P++   +      LP  + H   +    IS+    VSFTH +KA EP FT L + LF
Sbjct: 102 RKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF 161

Query: 210 LGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRNVFSKKFMVRKE 269
           L +   ++   SL+PIVGGVALAS+ E  F W  F  AM SN+ +  R++F+KK M  K 
Sbjct: 162 LKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKS 221

Length = 350

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 116 IFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHT-L 174
           +F+K++L+    P T TA++F    +++IL+  L       L+      +L L +  T L
Sbjct: 8   VFSKKLLERIS-PLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTAL 66

Query: 175 GNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL 234
           G LL   +L  V+ S    I ++ P FT++ + L LGEK T+     +V I+ GV L  L
Sbjct: 67  GYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 4/164 (2%)

Query: 106 LWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVI 165
           LW LL     I  K  ++         A +F    ++++ +  L         R    ++
Sbjct: 14  LWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLL 73

Query: 166 LPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAA-LFLGEKPTIWLASSLVP 224
           L   +   L  LL  ++L   + S    I  + P FT L A  L LGE+ ++     ++ 
Sbjct: 74  LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILL 133

Query: 225 IVGGVALASL---TEATFNWTGFCSAMASNVTNQSRNVFSKKFM 265
            + GV L  L        +  G   A+A+ +         K+  
Sbjct: 134 ALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS 177

Length = 292

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 1/116 (0%)

Query: 123 KVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHT-LGNLLTNI 181
           ++        A        +++L+          +    + ++L L V  T L  LL   
Sbjct: 175 RLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYY 234

Query: 182 SLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA 237
           +L  +  S    +  +EP F  L   L LGE  +         +V GV LASL   
Sbjct: 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR 290

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.97
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.95
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.95
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.79
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.74
PRK11272	292	putative DMT superfamily transporter inner membran	99.65
PLN00411	358	nodulin MtN21 family protein; Provisional	99.65
PRK11689	295	aromatic amino acid exporter; Provisional	99.64
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.62
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.61
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.6
PRK15430	296	putative chloramphenical resistance permease RarD;	99.59
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.58
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.49
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.48
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.44
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.42
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.42
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.33
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.17
COG2510	140	Predicted membrane protein [Function unknown]	99.16
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.05
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.98
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.94
KOG2765	416	consensus Predicted membrane protein [Function unk	98.94
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.93
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.92
PLN00411	358	nodulin MtN21 family protein; Provisional	98.91
KOG1581	327	consensus UDP-galactose transporter related protei	98.87
PRK11689	295	aromatic amino acid exporter; Provisional	98.84
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.83
PRK11272	292	putative DMT superfamily transporter inner membran	98.82
KOG1582	367	consensus UDP-galactose transporter related protei	98.79
KOG1580	337	consensus UDP-galactose transporter related protei	98.73
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.7
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.62
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.56
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.54
COG2962	293	RarD Predicted permeases [General function predict	98.54
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.48
PRK15430	296	putative chloramphenical resistance permease RarD;	98.45
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.44
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.39
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.34
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.33
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.28
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.27
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.25
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.91
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.75
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	97.69
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.64
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.59
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.57
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.51
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.41
PRK11431	105	multidrug efflux system protein; Provisional	97.39
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.33
KOG2766	336	consensus Predicted membrane protein [Function unk	97.22
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.15
COG2076	106	EmrE Membrane transporters of cations and cationic	97.13
COG2962	293	RarD Predicted permeases [General function predict	96.98
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.83
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.79
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.67
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.6
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.53
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.42
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.25
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.19
PRK13499	345	rhamnose-proton symporter; Provisional	95.6
PRK13499	345	rhamnose-proton symporter; Provisional	94.96
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.92
KOG1581	327	consensus UDP-galactose transporter related protei	94.72
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.63
KOG2922	335	consensus Uncharacterized conserved protein [Funct	91.15
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	91.01
KOG1580	337	consensus UDP-galactose transporter related protei	88.98
KOG2765	416	consensus Predicted membrane protein [Function unk	88.28
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	87.81
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	87.28
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	86.5
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	84.17
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	82.06
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	80.37

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.97  E-value=9.4e-29  Score=232.38  Aligned_cols=173  Identities=36%  Similarity=0.597  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC--HHhHHHHHHHHHHHH
Q 041338           96 QTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLT--RSQFAVILPLAVAHT  173 (269)
Q Consensus        96 ~~~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls--~~~~~~ll~lgll~~  173 (269)
                      ..+++.++|.+||.+|+.++++||++++.+|+|++++.+|++++++++.+.|..+.++.++..  +++++.++++|+++.
T Consensus        46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         46 FKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999887666766555555553  457899999999998


Q ss_pred             HHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHH
Q 041338          174 LGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVT  253 (269)
Q Consensus       174 ~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~alls~~~  253 (269)
                      +.+...+.|+++++++++|++|+++|+|+++++++++|||++++++++++++++||++++.+|.++++.|++++++++++
T Consensus       126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~  205 (350)
T PTZ00343        126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLG  205 (350)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHHhhcccC
Q 041338          254 NQSRNVFSKKFMVRK  268 (269)
Q Consensus       254 ~al~~V~~Kkll~~~  268 (269)
                      +++|+++.||+++++
T Consensus       206 ~a~~~i~~k~~~~~~  220 (350)
T PTZ00343        206 SSLRSIFAKKTMKNK  220 (350)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999998765

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.95  E-value=6.1e-26  Score=208.05  Aligned_cols=168  Identities=54%  Similarity=0.907  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 041338           99 QLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLL  178 (269)
Q Consensus        99 ~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~l  178 (269)
                      +.+.++.+||.+|+.++++||++++.+++|+++++.|+.++.+++.+.+..+..++++.++++++.++++|++++..+.+
T Consensus         2 ~~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   81 (302)
T TIGR00817         2 QTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVT   81 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999887766654444456667889999999999999888899


Q ss_pred             HHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHH
Q 041338          179 TNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRN  258 (269)
Q Consensus       179 ~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~alls~~~~al~~  258 (269)
                      +|.+++|+++++++++++++|+|+++++++++|||++++++++++++++|+++...++.++++.|++++++++++|++|+
T Consensus        82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~  161 (302)
T TIGR00817        82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRN  161 (302)
T ss_pred             HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877777788899999999999999999


Q ss_pred             HHHHhhcc
Q 041338          259 VFSKKFMV  266 (269)
Q Consensus       259 V~~Kkll~  266 (269)
                      ++.||.++
T Consensus       162 v~~k~~~~  169 (302)
T TIGR00817       162 IFSKKAMT  169 (302)
T ss_pred             HHHHHhhc
Confidence            99999887

specificities overlap.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.95  E-value=7.6e-28  Score=222.57  Aligned_cols=175  Identities=40%  Similarity=0.647  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHhHHHHHHHHH
Q 041338           94 AIQTLQLGGMFGLWYLLNIYFNIFNKQVLK--VFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKL-TRSQFAVILPLAV  170 (269)
Q Consensus        94 ~~~~~~~~~l~~~W~~~si~~~i~nK~il~--~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~l-s~~~~~~ll~lgl  170 (269)
                      .++....+..+..||++|++++++||++++  +|+||.++|..|++++.+...+.+.++..+.++. ++.+++.++++|+
T Consensus        12 ~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~   91 (316)
T KOG1441|consen   12 LKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGL   91 (316)
T ss_pred             cchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Confidence            347788899999999999999999999999  8999999999999999999988888887776665 4578999999999


Q ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHH
Q 041338          171 AHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMAS  250 (269)
Q Consensus       171 l~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~alls  250 (269)
                      ++++++++.|.|+.|++||++|++|+++|+|++++++++.+|++++++++++++++.||.+++.+|.++|+.|++.++++
T Consensus        92 ~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s  171 (316)
T KOG1441|consen   92 VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMIS  171 (316)
T ss_pred             HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccC
Q 041338          251 NVTNQSRNVFSKKFMVRK  268 (269)
Q Consensus       251 ~~~~al~~V~~Kkll~~~  268 (269)
                      ++.+++++++.|+++++|
T Consensus       172 ~~~~al~~I~~~~ll~~~  189 (316)
T KOG1441|consen  172 NLAFALRNILSKKLLTSK  189 (316)
T ss_pred             HHHHHHHHHHHHHhhhcc
Confidence            999999999999999643

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.79  E-value=6.5e-19  Score=160.14  Aligned_cols=177  Identities=24%  Similarity=0.303  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCC----CCCH-HhHHHHHH
Q 041338           93 AAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARP----KLTR-SQFAVILP  167 (269)
Q Consensus        93 ~~~~~~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~----~ls~-~~~~~ll~  167 (269)
                      -+.+......++.+||.++++...++|+....|+||+.++.+|+++-.++..........+.+    ..++ ++.+.+.|
T Consensus        10 ~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aP   89 (349)
T KOG1443|consen   10 FLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAP   89 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhh
Confidence            456667777777999999999999999999999999999999999888776554333222222    3344 45778889


Q ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHH
Q 041338          168 LAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSA  247 (269)
Q Consensus       168 lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~a  247 (269)
                      .|+..++.+.+.|++++|+++++++|.|+..++|+.+++.+|.-|++++.-.+.++++-+|+.+.++++.++|..|+.++
T Consensus        90 talata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv  169 (349)
T KOG1443|consen   90 TALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLV  169 (349)
T ss_pred             hhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccCC
Q 041338          248 MASNVTNQSRNVFSKKFMVRKE  269 (269)
Q Consensus       248 lls~~~~al~~V~~Kkll~~~~  269 (269)
                      +++.++.+++..+.+.+++|.|
T Consensus       170 ~~aS~~sGlRW~~tQ~ll~~~~  191 (349)
T KOG1443|consen  170 LAASLLSGLRWAFTQMLLRNQP  191 (349)
T ss_pred             HHHHHhhhhhHHHHHHHHhcCc
Confidence            9999999999999999998864

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.4e-16  Score=145.95  Aligned_cols=168  Identities=21%  Similarity=0.266  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH--HHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 041338          101 GGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTA--FQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLL  178 (269)
Q Consensus       101 ~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~--~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~l  178 (269)
                      ....+.+..+++.+.+.||+++..++||..+..  +|.+++.+.+.++...+..+.++++++..++++|+.+++.+..+.
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t   93 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT   93 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH
Confidence            445566778889999999999999999988877  999999998888777777788889999999999999999999999


Q ss_pred             HHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHH
Q 041338          179 TNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSRN  258 (269)
Q Consensus       179 ~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~alls~~~~al~~  258 (269)
                      ...+++|++++++.++|..+|+++++.+..++|.++++..+.++..+.+|......+|.++|..|+.|++...++.+.+.
T Consensus        94 ~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~  173 (314)
T KOG1444|consen   94 GSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFV  173 (314)
T ss_pred             ccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccC
Q 041338          259 VFSKKFMVRK  268 (269)
Q Consensus       259 V~~Kkll~~~  268 (269)
                      ++.||..+.+
T Consensus       174 v~~kk~vd~~  183 (314)
T KOG1444|consen  174 VYVKKSVDSA  183 (314)
T ss_pred             HHHHHhhccc
Confidence            9999987654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.65  E-value=3.9e-14  Score=129.65  Aligned_cols=164  Identities=15%  Similarity=0.168  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH-H
Q 041338           95 IQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAH-T  173 (269)
Q Consensus        95 ~~~~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~-~  173 (269)
                      +-.+.+.....+|..    ..+..|...++.+ |..++++|+.++.+++++....+..+  ..+++++...+.+|.+. .
T Consensus         8 ~~~~~~~~~~~iWg~----~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~   80 (292)
T PRK11272          8 PLFGALFALYIIWGS----TYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLA   80 (292)
T ss_pred             HHHHHHHHHHHHHhh----HHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHH
Confidence            334455566666654    3457898888888 99999999999988876543322212  23467788778888875 4


Q ss_pred             HHHHHHHHHH-hhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc-cccccHHHHHHHHHHH
Q 041338          174 LGNLLTNISL-VTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT-EATFNWTGFCSAMASN  251 (269)
Q Consensus       174 ~~~~l~n~AL-~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~-~~s~~~~G~~~alls~  251 (269)
                      ..+.+.+.+. ++++++.+.++.++.|+++.+++.+ +|||++++++.++++.++|+.+...+ +.+.+..|.+++++++
T Consensus        81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~  159 (292)
T PRK11272         81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIAS  159 (292)
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHH
Confidence            5567888898 9999999999999999999999986 69999999999999999999988643 3445678999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 041338          252 VTNQSRNVFSKKFMV  266 (269)
Q Consensus       252 ~~~al~~V~~Kkll~  266 (269)
                      ++|+.+.+..||..+
T Consensus       160 ~~~a~~~~~~~~~~~  174 (292)
T PRK11272        160 ASWAFGSVWSSRLPL  174 (292)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999999754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.65  E-value=2.2e-14  Score=135.64  Aligned_cols=158  Identities=11%  Similarity=0.117  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHHHHHHhh-c-cCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041338          109 LLNIYFNIFNKQVLKV-FPYPTTVTAFQFGCGTVMIILMWTLN-L-YARPKLTRSQFAVILPLAVAHTLGNLLTNISLVT  185 (269)
Q Consensus       109 ~~si~~~i~nK~il~~-f~~P~tLt~~q~~v~~l~l~l~~~l~-~-~~~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~  185 (269)
                      ..+.++.++.|..++. .+ |..++++|++++++++.+....+ . .+.++.+++++..+..+|++..+...+.+.+++|
T Consensus        23 ~~~~~~~~~~k~a~~~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~  101 (358)
T PLN00411         23 TSVVGISTLFKVATSKGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEY  101 (358)
T ss_pred             HHHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556677888888884 66 99999999999998886553322 1 2234445777788888888875556689999999


Q ss_pred             cCHHHHHHHhhhhHHHHHHHHHHh------hCCCCCHHHHHHHHHHHHhhhhhcc-ccc---------------------
Q 041338          186 VNVSFTHTIKAMEPFFTVLFAALF------LGEKPTIWLASSLVPIVGGVALASL-TEA---------------------  237 (269)
Q Consensus       186 vsvs~~~iikal~Pvftvils~l~------lgEr~t~~~~lgl~lii~GV~l~~~-~~~---------------------  237 (269)
                      ++++.+.++.++.|+|++++++++      ++||+++++++|+++.++|+++... ++.                     
T Consensus       102 tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~  181 (358)
T PLN00411        102 SNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLS  181 (358)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccC
Confidence            999999999999999999999999      6999999999999999999998653 111                     


Q ss_pred             --ccc-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041338          238 --TFN-WTGFCSAMASNVTNQSRNVFSKKFMVR  267 (269)
Q Consensus       238 --s~~-~~G~~~alls~~~~al~~V~~Kkll~~  267 (269)
                        ..+ ..|.+++++++++|+.|+++.||..++
T Consensus       182 ~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~  214 (358)
T PLN00411        182 SSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE  214 (358)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              112 459999999999999999999998754

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.64  E-value=2.6e-14  Score=131.05  Aligned_cols=159  Identities=18%  Similarity=0.157  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 041338           99 QLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLL  178 (269)
Q Consensus        99 ~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~l  178 (269)
                      -....+.+|...    .+..|..++.+| |..++++|+.++.+++.+..     +.++..+++++.++..++...+.+.+
T Consensus         8 ~~l~a~~~Wg~~----~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~   77 (295)
T PRK11689          8 IGLIAILLWSTM----VGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV-----GFPRLRQFPKRYLLAGGLLFVSYEIC   77 (295)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc-----cccccccccHHHHHHHhHHHHHHHHH
Confidence            345566777642    356899999999 99999999999988876432     11222222333333333434555667


Q ss_pred             HHHHHhh----cCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc-----------cccHHH
Q 041338          179 TNISLVT----VNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA-----------TFNWTG  243 (269)
Q Consensus       179 ~n~AL~~----vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~-----------s~~~~G  243 (269)
                      .+.++++    .+++.+.++.++.|+|+++++++++|||+++++++++++.++|+.+...++.           +.+..|
T Consensus        78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G  157 (295)
T PRK11689         78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLS  157 (295)
T ss_pred             HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHH
Confidence            7777754    5778889999999999999999999999999999999999999998865432           123569


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc
Q 041338          244 FCSAMASNVTNQSRNVFSKKFMVR  267 (269)
Q Consensus       244 ~~~alls~~~~al~~V~~Kkll~~  267 (269)
                      ++++++++++|+.|+++.||..++
T Consensus       158 ~~~~l~aa~~~A~~~v~~k~~~~~  181 (295)
T PRK11689        158 YGLAFIGAFIWAAYCNVTRKYARG  181 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999998654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.62  E-value=4.5e-14  Score=125.76  Aligned_cols=147  Identities=13%  Similarity=0.119  Sum_probs=121.6

Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHH-HHHHHHHHHHHHhhcCHHHHHH
Q 041338          115 NIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVA-HTLGNLLTNISLVTVNVSFTHT  193 (269)
Q Consensus       115 ~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll-~~~~~~l~n~AL~~vsvs~~~i  193 (269)
                      .+..|..++....|..+++.|++++.+++.+....+      .+++++...+..|.+ +.+.+.+.+.|+++++++.+.+
T Consensus         5 ~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i   78 (260)
T TIGR00950         5 GVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL   78 (260)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence            356899887644388999999998888776543222      235566667777766 4667789999999999999999


Q ss_pred             HhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc-cccccHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041338          194 IKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT-EATFNWTGFCSAMASNVTNQSRNVFSKKFMVR  267 (269)
Q Consensus       194 ikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~-~~s~~~~G~~~alls~~~~al~~V~~Kkll~~  267 (269)
                      +.+++|+++.+++.+++|||++++++.++++.++|+++.... +.+.+..|++++++++++|+.++++.||..++
T Consensus        79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~  153 (260)
T TIGR00950        79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKK  153 (260)
T ss_pred             HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence            999999999999999999999999999999999999887543 34456789999999999999999999998754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.61  E-value=3.4e-14  Score=130.89  Aligned_cols=160  Identities=19%  Similarity=0.295  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHhhc-C--CcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041338          107 WYLLNIYFNIFNKQVLKV-F--PYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISL  183 (269)
Q Consensus       107 W~~~si~~~i~nK~il~~-f--~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~l~n~AL  183 (269)
                      .++.-..+.++++++.+. +  ++|.++++.|+++..++..+......  .++.++..++..+++++++.++..++|.|+
T Consensus         8 i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al   85 (303)
T PF08449_consen    8 IFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444456677777763 2  36999999999998887765432221  233345678888999999999999999999


Q ss_pred             hhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccccc----cc------HHHHHHHHHHHHH
Q 041338          184 VTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEAT----FN------WTGFCSAMASNVT  253 (269)
Q Consensus       184 ~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s----~~------~~G~~~alls~~~  253 (269)
                      +|++.++..++|++.|+++++++++++|||++++++++++++++|+++...+|.+    .+      ..|+++.+++.++
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~  165 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLL  165 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998764421    11      2399999999999


Q ss_pred             HHHHHHHHHhhcccC
Q 041338          254 NQSRNVFSKKFMVRK  268 (269)
Q Consensus       254 ~al~~V~~Kkll~~~  268 (269)
                      .+.+.++.||++++.
T Consensus       166 ~a~~~~~qe~~~~~~  180 (303)
T PF08449_consen  166 DAFTGVYQEKLFKKY  180 (303)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998653

; GO: 0055085 transmembrane transport

>TIGR00688 rarD rarD protein

Probab=99.60  E-value=1.2e-13  Score=123.61  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH-HhhccC----C-CCCCHHh-HHHHHHHHHHH
Q 041338          100 LGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMW-TLNLYA----R-PKLTRSQ-FAVILPLAVAH  172 (269)
Q Consensus       100 ~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~-~l~~~~----~-~~ls~~~-~~~ll~lgll~  172 (269)
                      ..+.+.+|...    .++.|. +.+++ |.+++++|++++.+++.+.. ..+.++    + .+.++++ +..+...|++.
T Consensus         7 ~i~a~~~wg~~----~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         7 SLLASFLFGYM----YYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             HHHHHHHHHHH----HHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            34445556532    345787 45688 99999999999988765432 222111    0 1112222 33455667777


Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHH
Q 041338          173 TLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNV  252 (269)
Q Consensus       173 ~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~alls~~  252 (269)
                      .+...++++|+++++++.+.++.++.|+|+++++++++|||+++++++++++.++|+++....+.+.+    .+++++++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~  156 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAF  156 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHH
Confidence            77788999999999999999999999999999999999999999999999999999998754322222    35788999


Q ss_pred             HHHHHHHHHHhhcc
Q 041338          253 TNQSRNVFSKKFMV  266 (269)
Q Consensus       253 ~~al~~V~~Kkll~  266 (269)
                      +|+.|.+..||..+
T Consensus       157 ~~a~~~i~~~~~~~  170 (256)
T TIGR00688       157 SFTAYGLIRKALKN  170 (256)
T ss_pred             HHHHHHHHHhhcCC
Confidence            99999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.59  E-value=2.1e-13  Score=125.09  Aligned_cols=163  Identities=12%  Similarity=0.104  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCC---C-CCHHhHHHHHHHH
Q 041338           94 AIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARP---K-LTRSQFAVILPLA  169 (269)
Q Consensus        94 ~~~~~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~---~-ls~~~~~~ll~lg  169 (269)
                      .+..+...+...+|...    .++.|.. .+++ |..++++|++++.+++.+.+..+..++.   + .+++++...+ ++
T Consensus         7 ~~g~~~~l~a~~~wg~~----~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   79 (296)
T PRK15430          7 RQGVLLALAAYFIWGIA----PAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLA-VS   79 (296)
T ss_pred             hhHHHHHHHHHHHHHHH----HHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHH-HH
Confidence            34444555555566543    2445765 5688 9999999999998876554322211100   0 1233332223 44


Q ss_pred             HH-HHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHHH
Q 041338          170 VA-HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAM  248 (269)
Q Consensus       170 ll-~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~al  248 (269)
                      .+ ....+.++++++++++++.+.++.++.|+++++++++++|||+++++++++++.++|+.++...+.+..    .+++
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l  155 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIAL  155 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHH
Confidence            44 556788999999999999999999999999999999999999999999999999999998764322221    4578


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 041338          249 ASNVTNQSRNVFSKKFMVR  267 (269)
Q Consensus       249 ls~~~~al~~V~~Kkll~~  267 (269)
                      +++++|+.|.++.||..++
T Consensus       156 ~aa~~~a~~~i~~r~~~~~  174 (296)
T PRK15430        156 GLAFSFAFYGLVRKKIAVE  174 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCC
Confidence            8999999999999997543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.58  E-value=3e-13  Score=124.18  Aligned_cols=157  Identities=18%  Similarity=0.249  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHH-HH
Q 041338           98 LQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTL-GN  176 (269)
Q Consensus        98 ~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~-~~  176 (269)
                      +.......+|...    .+..|..+++++ |..++++|++++.+.+.+..  .   +++.   .++.++..|++... ..
T Consensus         7 l~~l~~~~~Wg~~----~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~--~---~~~~---~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          7 VLALLVVVVWGLN----FVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFV--A---RPKV---PLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHhhh----HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHh--c---CCCC---chHHHHHHHHHHHHHHH
Confidence            3345556677643    345788888999 99999999998776554322  1   1221   23344455665433 34


Q ss_pred             HHHHHHHhh-cCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc---ccccHHHHHHHHHHHH
Q 041338          177 LLTNISLVT-VNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE---ATFNWTGFCSAMASNV  252 (269)
Q Consensus       177 ~l~n~AL~~-vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~---~s~~~~G~~~alls~~  252 (269)
                      .+.+.++++ ++++.+.++.++.|+++.+++++++|||+++++++++++.++|+.+....+   .+.++.|+++++++++
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal  153 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAF  153 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHH
Confidence            577788887 689999999999999999999999999999999999999999999886532   2335689999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 041338          253 TNQSRNVFSKKFMVR  267 (269)
Q Consensus       253 ~~al~~V~~Kkll~~  267 (269)
                      +|+.|.++.||..++
T Consensus       154 ~~a~~~v~~~~~~~~  168 (299)
T PRK11453        154 SWACGNIFNKKIMSH  168 (299)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999997643

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.49  E-value=2.9e-12  Score=120.01  Aligned_cols=160  Identities=13%  Similarity=0.136  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041338          110 LNIYFNIFNKQVLK-VFPYPTTVTAFQFGCGTVMIILMWTLNLYA--RPKLTRSQFAVILPLAVAHTLGNLLTNISLVTV  186 (269)
Q Consensus       110 ~si~~~i~nK~il~-~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~--~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~v  186 (269)
                      ++.+.+..+..+-+ +.+.|.+-+++-.+.-.++.......+..+  ..+.-+++|++.+.+|++...++.+.+.|++|+
T Consensus        24 ~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yT  103 (334)
T PF06027_consen   24 CITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYT  103 (334)
T ss_pred             HHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33444455555444 366677666554433222221111222111  112234667788889999999999999999999


Q ss_pred             CHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc---------cccHHHHHHHHHHHHHHHHH
Q 041338          187 NVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA---------TFNWTGFCSAMASNVTNQSR  257 (269)
Q Consensus       187 svs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~---------s~~~~G~~~alls~~~~al~  257 (269)
                      +++.++++.++..+|+++++++++++|+++.+++|+++.++|+.+....|.         +-..+|.+++++++++|+++
T Consensus       104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~  183 (334)
T PF06027_consen  104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVS  183 (334)
T ss_pred             cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998765432         12379999999999999999


Q ss_pred             HHHHHhhcccCC
Q 041338          258 NVFSKKFMVRKE  269 (269)
Q Consensus       258 ~V~~Kkll~~~~  269 (269)
                      +|+.|++.++.+
T Consensus       184 nV~~E~~v~~~~  195 (334)
T PF06027_consen  184 NVLEEKLVKKAP  195 (334)
T ss_pred             HHHHHHhcccCC
Confidence            999999987653

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.7e-14  Score=129.89  Aligned_cols=173  Identities=21%  Similarity=0.338  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCcHHHHHHHHHHHHHHHHHHH-HHhhc----cCCC--CCCHHhH
Q 041338           94 AIQTLQLGGMFGLWYLLNIYFNIFNKQVLKV----FPYPTTVTAFQFGCGTVMIILM-WTLNL----YARP--KLTRSQF  162 (269)
Q Consensus        94 ~~~~~~~~~l~~~W~~~si~~~i~nK~il~~----f~~P~tLt~~q~~v~~l~l~l~-~~l~~----~~~~--~ls~~~~  162 (269)
                      ..+..+.......++.++|++.+.||++++.    .+.|.+++.+|+.+...++... +....    +..|  +++.+..
T Consensus        23 ~~n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~  102 (347)
T KOG1442|consen   23 EANAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATA  102 (347)
T ss_pred             HHhhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHH
Confidence            3556667777788889999999999999984    6789999999999988877654 33221    1223  3566778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc---ccc
Q 041338          163 AVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE---ATF  239 (269)
Q Consensus       163 ~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~---~s~  239 (269)
                      +.++|+.+++.+++.+.|.+++|++++++++-++++.+|+++++++++|++-+.....+++++++|-.+-...|   ..+
T Consensus       103 r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~l  182 (347)
T KOG1442|consen  103 RQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTL  182 (347)
T ss_pred             HhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877666   567


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041338          240 NWTGFCSAMASNVTNQSRNVFSKKFMV  266 (269)
Q Consensus       240 ~~~G~~~alls~~~~al~~V~~Kkll~  266 (269)
                      +|.|.++++.+.++-|+..++.||.+.
T Consensus       183 s~~GvifGVlaSl~vAlnaiytkk~l~  209 (347)
T KOG1442|consen  183 SWIGVIFGVLASLAVALNAIYTKKVLP  209 (347)
T ss_pred             chhhhHHHHHHHHHHHHHHHhhheecc
Confidence            899999999999999999999998654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.44  E-value=1.3e-12  Score=102.50  Aligned_cols=118  Identities=25%  Similarity=0.451  Sum_probs=100.0

Q ss_pred             HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCCHHhHHHHHHHHHHH-HHHHHHHHHHHhhcCHHHH
Q 041338          114 FNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILM-WTLNLYARPKLTRSQFAVILPLAVAH-TLGNLLTNISLVTVNVSFT  191 (269)
Q Consensus       114 ~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~-~~l~~~~~~~ls~~~~~~ll~lgll~-~~~~~l~n~AL~~vsvs~~  191 (269)
                      +.+++|...++++ |...+++|+.++.+ +.+. ...+..+..+.+.+++...+.++++. .++..+.+.++++.+++.+
T Consensus         6 ~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   83 (126)
T PF00892_consen    6 YSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIV   83 (126)
T ss_pred             HHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHH
Confidence            4567899999999 99999999999987 4433 22222223456677888888888884 6788999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          192 HTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       192 ~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      +++..++|++++++++++++|+++++++.|++++++|+++..
T Consensus        84 ~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   84 SILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.42  E-value=2.3e-11  Score=111.55  Aligned_cols=157  Identities=18%  Similarity=0.184  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHH
Q 041338           98 LQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNL  177 (269)
Q Consensus        98 ~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~  177 (269)
                      ....+.+++|. .+.   ...|+.+++++ |..+.++|+.++.+++.+... +  ++.+.++++++..+..|++......
T Consensus        15 ~~~~la~~~~~-~~~---~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~-~--~~~~~~~~~~~~~~~~g~~~~~~~~   86 (293)
T PRK10532         15 LLLLIAMASIQ-SGA---SLAKSLFPLVG-APGVTALRLALGTLILIAIFK-P--WRLRFAKEQRLPLLFYGVSLGGMNY   86 (293)
T ss_pred             HHHHHHHHHHH-hhH---HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHh-H--HhccCCHHHHHHHHHHHHHHHHHHH
Confidence            33444444443 322   36899999999 999999999999888765431 1  1223456778888888888777778


Q ss_pred             HHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc--c-ccccHHHHHHHHHHHHHH
Q 041338          178 LTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT--E-ATFNWTGFCSAMASNVTN  254 (269)
Q Consensus       178 l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~--~-~s~~~~G~~~alls~~~~  254 (269)
                      +.++++++++++.+.++..+.|+++++++    +|++...  .++.+.++|+.++...  + .+.+..|.+++++++++|
T Consensus        87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~  160 (293)
T PRK10532         87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACW  160 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHH
Confidence            89999999999999999999999998887    3666544  4566778998876532  2 234678999999999999


Q ss_pred             HHHHHHHHhhcccC
Q 041338          255 QSRNVFSKKFMVRK  268 (269)
Q Consensus       255 al~~V~~Kkll~~~  268 (269)
                      +.|.+..||..++.
T Consensus       161 a~~~v~~r~~~~~~  174 (293)
T PRK10532        161 AIYILSGQRAGAEH  174 (293)
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999987654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.42  E-value=2e-11  Score=111.04  Aligned_cols=149  Identities=15%  Similarity=0.151  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 041338          114 FNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLN--LYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFT  191 (269)
Q Consensus       114 ~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~--~~~~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~  191 (269)
                      .++..|+..++-+ +.  +++.+.++.+++.+....+  ..+.+..+++.+..++..++.....+.+.+.++++.+++.+
T Consensus        16 ~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   92 (281)
T TIGR03340        16 WNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLV   92 (281)
T ss_pred             HHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence            4567887766533 42  3555555555554433222  11112223344444444455566778899999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041338          192 HTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE-ATFNWTGFCSAMASNVTNQSRNVFSKKFM  265 (269)
Q Consensus       192 ~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~-~s~~~~G~~~alls~~~~al~~V~~Kkll  265 (269)
                      ..+.+++|+++++++++++||++++++++|++++++|+.+....+ ...+..|+.++++++++|+.|.+..|+..
T Consensus        93 ~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~  167 (281)
T TIGR03340        93 YPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAA  167 (281)
T ss_pred             hhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccc
Confidence            999999999999999999999999999999999999999876543 23456788899999999999999998764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.33  E-value=4.5e-10  Score=100.10  Aligned_cols=149  Identities=21%  Similarity=0.235  Sum_probs=109.5

Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHH-HHHHHHHHHHHHhhcCHHHHHHH
Q 041338          116 IFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVA-HTLGNLLTNISLVTVNVSFTHTI  194 (269)
Q Consensus       116 i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll-~~~~~~l~n~AL~~vsvs~~~ii  194 (269)
                      ...|...+....+....+.|++++.++.......+.....+ ...+++..+..+.+ ......+.+.++++++++.+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (292)
T COG0697          24 IALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRP-ALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLI  102 (292)
T ss_pred             HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccc-cccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            44555555422156666668888877733322211110111 11223344444444 55567899999999999999999


Q ss_pred             hhhhHHHHHHHHH-HhhCCCCCHHHHHHHHHHHHhhhhhccccccc---cHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041338          195 KAMEPFFTVLFAA-LFLGEKPTIWLASSLVPIVGGVALASLTEATF---NWTGFCSAMASNVTNQSRNVFSKKFM  265 (269)
Q Consensus       195 kal~Pvftvils~-l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~---~~~G~~~alls~~~~al~~V~~Kkll  265 (269)
                      .++.|+++.+++. ++++||++++++.++++++.|++++...+...   ...|..++++++++++.+.+..|+..
T Consensus       103 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         103 IGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS  177 (292)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999997 67799999999999999999999998765443   35899999999999999999999876

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.17  E-value=4.9e-10  Score=100.91  Aligned_cols=111  Identities=20%  Similarity=0.250  Sum_probs=99.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc-
Q 041338          159 RSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA-  237 (269)
Q Consensus       159 ~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~-  237 (269)
                      +++..++..-++++++.+.+.+.++++++++.+|+++.+..++|++++++++|+|+++++|+++++.++|+++...++. 
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            4567778888999999999999999999999999999999999999999999999999999999999999998764311 


Q ss_pred             --------c--------ccHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 041338          238 --------T--------FNWTGFCSAMASNVTNQSRNVFSKKFMVRKE  269 (269)
Q Consensus       238 --------s--------~~~~G~~~alls~~~~al~~V~~Kkll~~~~  269 (269)
                              .        -...|+++++++.++.++..|+.+|++|+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~  141 (244)
T PF04142_consen   94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN  141 (244)
T ss_pred             ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                    1        1258999999999999999999999999874

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.16  E-value=4.1e-10  Score=91.26  Aligned_cols=130  Identities=20%  Similarity=0.187  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH-hhccCC-CCCCHHhHHHHHHHHHHHHHHHH
Q 041338          100 LGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWT-LNLYAR-PKLTRSQFAVILPLAVAHTLGNL  177 (269)
Q Consensus       100 ~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~-l~~~~~-~~ls~~~~~~ll~lgll~~~~~~  177 (269)
                      .+++.++++.   ...++.|..+++.+ |.+-|+.|..+..+++..... .+.... ..++++.|..+..-|+....+..
T Consensus         7 ~ALLsA~fa~---L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           7 YALLSALFAG---LTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHH---HHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            3444444443   34578999999999 999999999988887755432 232222 23567777777777776777888


Q ss_pred             HHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          178 LTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       178 l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      ++++|++...+|.+.=+-.+.|+++++++++++|||++.++++|++++++|+++.+
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999999999999999998765

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.05  E-value=1.9e-09  Score=85.48  Aligned_cols=105  Identities=19%  Similarity=0.281  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcc-CC--CCCCHHhHHHHHHHHHHHH-HHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHH
Q 041338          133 AFQFGCGTVMIILMWTLNLY-AR--PKLTRSQFAVILPLAVAHT-LGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAAL  208 (269)
Q Consensus       133 ~~q~~v~~l~l~l~~~l~~~-~~--~~ls~~~~~~ll~lgll~~-~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l  208 (269)
                      .+|+.++.+++......+.+ +.  ....++.+...+..|++.. .+..++++|+++.+ +.+..+.+++|+|+++++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            46777777766543222211 11  1122344555666677765 67889999999999 58889999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHhhhhhcccccc
Q 041338          209 FLGEKPTIWLASSLVPIVGGVALASLTEAT  238 (269)
Q Consensus       209 ~lgEr~t~~~~lgl~lii~GV~l~~~~~~s  238 (269)
                      ++|||++++++.+++++++|+++..+++.+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999876543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.98  E-value=4.2e-08  Score=87.28  Aligned_cols=116  Identities=21%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHH-HHHHHHHHHHhhcCHHHH
Q 041338          114 FNIFNKQVLKVFPY-PTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHT-LGNLLTNISLVTVNVSFT  191 (269)
Q Consensus       114 ~~i~nK~il~~f~~-P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~-~~~~l~n~AL~~vsvs~~  191 (269)
                      +.++.|+..++.+. +.....+++.++.+++.+...... +....+.+++..++.++++.+ ++..+++.++++.+++.+
T Consensus       143 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  221 (260)
T TIGR00950       143 GTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG-PNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA  221 (260)
T ss_pred             HHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            45678888876651 334555788888877765432221 222335667777788888764 578899999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhh
Q 041338          192 HTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVA  230 (269)
Q Consensus       192 ~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~  230 (269)
                      +++.+++|++++++++++++|+++..++.|.++++.|++
T Consensus       222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999974

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.94  E-value=6.5e-08  Score=88.95  Aligned_cols=156  Identities=22%  Similarity=0.190  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-HHhHHHHHHHHHHHHHHHHH
Q 041338          100 LGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLT-RSQFAVILPLAVAHTLGNLL  178 (269)
Q Consensus       100 ~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls-~~~~~~ll~lgll~~~~~~l  178 (269)
                      ..+.+.+|....    +..|++. ..+ +..+.  ++.++.+++......  .+.++.+ ++.+..-+..|++...++.+
T Consensus         6 ~lia~~~wGs~g----~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~--~~~~~~~~~~~~~~g~l~G~~w~ig~~~   75 (290)
T TIGR00776         6 ALIPALFWGSFV----LINVKIG-GGP-YSQTL--GTTFGALILSIAIAI--FVLPEFWALSIFLVGLLSGAFWALGQIN   75 (290)
T ss_pred             HHHHHHHHhhhH----HHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHH--HhCCcccccHHHHHHHHHHHHHHhhhhh
Confidence            345566676543    3446554 455 32322  566676665443222  1222222 33344445556668888999


Q ss_pred             HHHHHhhcCHHHHHHHhh-hhHHHHHHHHHHhhCCCCCHHH----HHHHHHHHHhhhhhcccccc-------cc-HHHHH
Q 041338          179 TNISLVTVNVSFTHTIKA-MEPFFTVLFAALFLGEKPTIWL----ASSLVPIVGGVALASLTEAT-------FN-WTGFC  245 (269)
Q Consensus       179 ~n~AL~~vsvs~~~iika-l~Pvftvils~l~lgEr~t~~~----~lgl~lii~GV~l~~~~~~s-------~~-~~G~~  245 (269)
                      +..+.+++.++.+..+.. +.++++.+++.+++||+.++++    ++|++++++|+++....+.+       .+ ..|++
T Consensus        76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~  155 (290)
T TIGR00776        76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGIL  155 (290)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHH
Confidence            999999999999999988 8889999999999999999999    99999999999987643211       34 78999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 041338          246 SAMASNVTNQSRNVFSKKFM  265 (269)
Q Consensus       246 ~alls~~~~al~~V~~Kkll  265 (269)
                      +++++.++|+.|.+..|+..
T Consensus       156 ~~l~sg~~y~~~~~~~~~~~  175 (290)
T TIGR00776       156 LLLMSTIGYLVYVVVAKAFG  175 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.94  E-value=6e-09  Score=97.75  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc--------ccc
Q 041338          169 AVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA--------TFN  240 (269)
Q Consensus       169 gll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~--------s~~  240 (269)
                      ..+....++++|.||++.+|+...++.+++-+||..++.++.+||+|+.+++++++.++||+++..++.        +-.
T Consensus       166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~  245 (416)
T KOG2765|consen  166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP  245 (416)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence            333445788999999999999999999999999999999999999999999999999999999987632        223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041338          241 WTGFCSAMASNVTNQSRNVFSKKFMVRK  268 (269)
Q Consensus       241 ~~G~~~alls~~~~al~~V~~Kkll~~~  268 (269)
                      ..|.++++++++.|++|.++.||-..++
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~e  273 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDE  273 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            7999999999999999999999988776

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.93  E-value=4.1e-09  Score=93.05  Aligned_cols=157  Identities=17%  Similarity=0.161  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHH
Q 041338          105 GLWYLLNIYFNIFNKQVLKV--FPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNIS  182 (269)
Q Consensus       105 ~~W~~~si~~~i~nK~il~~--f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~l~n~A  182 (269)
                      ..+...++.+++.||++++.  |+.-..+.++|-.++.+.+.++..++..+.   +..+.+.++|++++....+.....+
T Consensus        12 lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~f---R~t~aK~WfpiSfLLv~MIyt~SKs   88 (309)
T COG5070          12 LSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEF---RLTKAKKWFPISFLLVVMIYTSSKS   88 (309)
T ss_pred             HHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhe---ehhhhhhhcCHHHHHHHHHHhcccc
Confidence            45567889999999999984  665677888999888887766655444322   2445677789999999989999999


Q ss_pred             HhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc--------cccHHHHHHHHHHHHHH
Q 041338          183 LVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA--------TFNWTGFCSAMASNVTN  254 (269)
Q Consensus       183 L~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~--------s~~~~G~~~alls~~~~  254 (269)
                      ++|.+++.+++.|.++.+.++..+..++|.+.+-....+.++++..-+.+.++|.        .+| -|++|+....++.
T Consensus        89 LqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nclss  167 (309)
T COG5070          89 LQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLSS  167 (309)
T ss_pred             eeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHhH
Confidence            9999999999999999999999999999999999999999999999999888876        334 6999999999999


Q ss_pred             HHHHHHHHhhc
Q 041338          255 QSRNVFSKKFM  265 (269)
Q Consensus       255 al~~V~~Kkll  265 (269)
                      +.+-...||..
T Consensus       168 aafVL~mrkri  178 (309)
T COG5070         168 AAFVLIMRKRI  178 (309)
T ss_pred             HHHHHHHHHhh
Confidence            99988887754

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.92  E-value=8.9e-08  Score=87.80  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHhhcCHHHHH
Q 041338          114 FNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTL-GNLLTNISLVTVNVSFTH  192 (269)
Q Consensus       114 ~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~-~~~l~n~AL~~vsvs~~~  192 (269)
                      +.++.|+..++.+ |...+ ++.+++.+.+.+...... .....+...+...+.+|++.+. ++.++++++++++++.++
T Consensus       163 ~~v~~r~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as  239 (293)
T PRK10532        163 YILSGQRAGAEHG-PATVA-IGSLIAALIFVPIGALQA-GEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG  239 (293)
T ss_pred             HHHHHHHHhccCC-chHHH-HHHHHHHHHHHHHHHHcc-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence            4566788776666 77664 555666655544322211 1122344555556788888654 678999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          193 TIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       193 iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      ++..++|+++++++++++||+++..+++|.+++++|++....
T Consensus       240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.91  E-value=1.1e-07  Score=90.29  Aligned_cols=120  Identities=12%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHh-hccC-C---CCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 041338          114 FNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTL-NLYA-R---PKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNV  188 (269)
Q Consensus       114 ~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l-~~~~-~---~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~vsv  188 (269)
                      +++..|.....++.+...+++++.++.+.+.+.... .... .   ...+.. ...++..+++..+.+.+++++++++++
T Consensus       204 ~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga  282 (358)
T PLN00411        204 SFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITSVYYVIHSWTVRHKGP  282 (358)
T ss_pred             HHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            456778877888756677888888877766443221 1110 0   111222 233555666555567799999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          189 SFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       189 s~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      +.+.+...++|+|+++++++++||++++.+++|.+++++|+.++..
T Consensus       283 ~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        283 LYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999875

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.87  E-value=1.9e-07  Score=85.73  Aligned_cols=174  Identities=14%  Similarity=0.078  Sum_probs=141.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHH
Q 041338           92 SAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLK--------VFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFA  163 (269)
Q Consensus        92 ~~~~~~~~~~~l~~~W~~~si~~~i~nK~il~--------~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~  163 (269)
                      ....+.+++.+.+..-|+.-....++...+..        .|..|.++.++|-.++.++...+  ++..+.+....+.|+
T Consensus         7 ~~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~--l~~~k~~~~~~apl~   84 (327)
T KOG1581|consen    7 GMANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAM--LKWWKKELSGVAPLY   84 (327)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHH--HhcccccCCCCCchh
Confidence            34567777777666666666777777777665        26679999999999888877443  233344333456788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc--c----
Q 041338          164 VILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE--A----  237 (269)
Q Consensus       164 ~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~--~----  237 (269)
                      ....+++..+.+..+++.|++|++-+...+.|++--+-+++...++.|+|++..+|+...++.+||.+....+  .    
T Consensus        85 ~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~  164 (327)
T KOG1581|consen   85 KYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSK  164 (327)
T ss_pred             HHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999876431  1    


Q ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 041338          238 ---TFNWTGFCSAMASNVTNQSRNVFSKKFMVR  267 (269)
Q Consensus       238 ---s~~~~G~~~alls~~~~al~~V~~Kkll~~  267 (269)
                         ..+.+|+.+....-++.+.-|..++++.++
T Consensus       165 ~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~  197 (327)
T KOG1581|consen  165 SGRENSPIGILLLFGYLLFDGFTNATQDSLFKK  197 (327)
T ss_pred             cCCCCchHhHHHHHHHHHHHhhHHhHHHHHhcc
Confidence               235899999999999999999999988764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.84  E-value=1.6e-07  Score=86.23  Aligned_cols=118  Identities=14%  Similarity=0.143  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 041338          113 YFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTH  192 (269)
Q Consensus       113 ~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~  192 (269)
                      .+++++|+..++.+ |.+..  +.. +.+.+.+............+.+.+..++..++...+++.++++++++.+++.++
T Consensus       170 ~~~v~~k~~~~~~~-~~~~~--~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s  245 (295)
T PRK11689        170 AYCNVTRKYARGKN-GITLF--FIL-TALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLA  245 (295)
T ss_pred             HHHHHHhhccCCCC-chhHH--HHH-HHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            35667888766666 66542  232 333332222222111223456667777777755555788999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          193 TIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       193 iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      ++.+++|++.++++++++||+++..+++|.++++.|+.+...
T Consensus       246 ~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        246 TASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            999999999999999999999999999999999999988754

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.83  E-value=2.7e-07  Score=82.87  Aligned_cols=140  Identities=16%  Similarity=0.180  Sum_probs=113.2

Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhh
Q 041338          117 FNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKA  196 (269)
Q Consensus       117 ~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iika  196 (269)
                      +.|.++-.+. |...+.+|.+++.++++.++.  - .+.+.++++++.++..|+...+.|.+++.+++.++.+.+..+..
T Consensus        30 ~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~R--P-wr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF  105 (292)
T COG5006          30 FAKSLFPLVG-AAGVTALRLAIAALILLALFR--P-WRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEF  105 (292)
T ss_pred             HHHHHccccC-hhhHHHHHHHHHHHHHHHHhh--H-HHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Confidence            5688888888 999999999999998876542  1 12456788999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc---cccccHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041338          197 MEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT---EATFNWTGFCSAMASNVTNQSRNVFSKKFMV  266 (269)
Q Consensus       197 l~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~---~~s~~~~G~~~alls~~~~al~~V~~Kkll~  266 (269)
                      +-|+.+.+++    .+|.  +..+.+.+.+.|+.+....   ..+.|..|..+++++..||+.|.+..||.-+
T Consensus       106 ~GPL~vA~~~----sRr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~  172 (292)
T COG5006         106 TGPLAVALLS----SRRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR  172 (292)
T ss_pred             ccHHHHHHHh----ccch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc
Confidence            9999766554    3333  3445566677887766532   2467999999999999999999999998753

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.82  E-value=2.3e-07  Score=84.99  Aligned_cols=120  Identities=18%  Similarity=0.067  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCHHhHHHHHHHHHHHH-HHHHHHHHHHhhcCHHHH
Q 041338          114 FNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYAR-PKLTRSQFAVILPLAVAHT-LGNLLTNISLVTVNVSFT  191 (269)
Q Consensus       114 ~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~-~~ls~~~~~~ll~lgll~~-~~~~l~n~AL~~vsvs~~  191 (269)
                      +.++.|+.-+ -+ +...+++|+.++.+.+.+......... ...+.+.|..++.++++.+ +++.+++.++++++++.+
T Consensus       165 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~  242 (292)
T PRK11272        165 GSVWSSRLPL-PV-GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALA  242 (292)
T ss_pred             HHHHHHhcCC-Cc-chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            3456677533 22 566778999888887655422211111 1124567888888888754 577899999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc
Q 041338          192 HTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT  235 (269)
Q Consensus       192 ~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~  235 (269)
                      .++..++|+++++++++++||++++.+++|.++++.|+.+....
T Consensus       243 s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        243 TSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887653

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.79  E-value=3.5e-08  Score=89.45  Aligned_cols=170  Identities=15%  Similarity=0.087  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cC-CcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHH
Q 041338           95 IQTLQLGGMFGLWYLLNIYFNIFNKQVLK--VF-PYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVA  171 (269)
Q Consensus        95 ~~~~~~~~l~~~W~~~si~~~i~nK~il~--~f-~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll  171 (269)
                      +++.+..+.+.......+.+......+++  .| ||.|.+|+.|+++-..+.++-.  ... .++.....|+....++.+
T Consensus        39 pkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~--~~~-~~k~r~iP~rtY~~la~~  115 (367)
T KOG1582|consen   39 PKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIEL--QLI-QTKRRVIPWRTYVILAFL  115 (367)
T ss_pred             chhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEE--Eee-cccceecchhHhhhhHhh
Confidence            56777777777777788888888999988  35 4789999999987665543321  111 122223468888889988


Q ss_pred             HHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc----ccccHHHHHHH
Q 041338          172 HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE----ATFNWTGFCSA  247 (269)
Q Consensus       172 ~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~----~s~~~~G~~~a  247 (269)
                      ..+.+.++|-++.|.+-+..-+.|++.-+-+++.+.++-|+|+.+..+.+..++.+|.++....|    ..||..|+.++
T Consensus       116 t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mI  195 (367)
T KOG1582|consen  116 TVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMI  195 (367)
T ss_pred             hhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999987654    46789999999


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 041338          248 MASNVTNQSRNVFSKKFMVR  267 (269)
Q Consensus       248 lls~~~~al~~V~~Kkll~~  267 (269)
                      -++-++.|.-.-.++|.|+.
T Consensus       196 sgALl~DA~iGNvQEk~m~~  215 (367)
T KOG1582|consen  196 SGALLADAVIGNVQEKAMKM  215 (367)
T ss_pred             HHHHHHHHHhhHHHHHHHhh
Confidence            99999999988888877754

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.6e-08  Score=90.07  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHhh-----------cCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHHHH
Q 041338          108 YLLNIYFNIFNKQVLK-----------VFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTLGN  176 (269)
Q Consensus       108 ~~~si~~~i~nK~il~-----------~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~~~  176 (269)
                      .++...+.|....+.+           .|.|.+++.++|+.+..++.-++..  .++..++|...-+.....++.+.+.+
T Consensus        22 fvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~--ir~~~~~D~t~~~~YaAcs~sYLlAM   99 (337)
T KOG1580|consen   22 FVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFL--IRKKTEIDNTPTKMYAACSASYLLAM   99 (337)
T ss_pred             hheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhhee--ecccccccCCcchHHHHHHHHHHHHH
Confidence            3455556677777665           2667889999999988887644322  23445555555556667777888889


Q ss_pred             HHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc-------cccHHHHHHHHH
Q 041338          177 LLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA-------TFNWTGFCSAMA  249 (269)
Q Consensus       177 ~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~-------s~~~~G~~~all  249 (269)
                      +..|.|+++++-+..-+-|++.|+-++++++++.+++++|++|++++++++||++..+.|.       +..-.|-++.++
T Consensus       100 VssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~l  179 (337)
T KOG1580|consen  100 VSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLIL  179 (337)
T ss_pred             HhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987642       223478888888


Q ss_pred             HHHHHHHHHHHHHhh
Q 041338          250 SNVTNQSRNVFSKKF  264 (269)
Q Consensus       250 s~~~~al~~V~~Kkl  264 (269)
                      +-...++-...+.|+
T Consensus       180 SL~mDGlTg~~Qdri  194 (337)
T KOG1580|consen  180 SLAMDGLTGSIQDRI  194 (337)
T ss_pred             HHHhcccchhHHHHH
Confidence            887777777766654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.70  E-value=1.2e-06  Score=80.40  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhcCCcH--HHHHHHHHHHHHHHHHHH-HHhhccC-----CCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHh
Q 041338          114 FNIFNKQVLKVFPYP--TTVTAFQFGCGTVMIILM-WTLNLYA-----RPKLTRSQFAVILPLAVAHTL-GNLLTNISLV  184 (269)
Q Consensus       114 ~~i~nK~il~~f~~P--~tLt~~q~~v~~l~l~l~-~~l~~~~-----~~~ls~~~~~~ll~lgll~~~-~~~l~n~AL~  184 (269)
                      +.++.|+..+..+.|  .....++++++.+..... .......     ....+.+.+..++.+|++.+. ++.+++.+++
T Consensus       158 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~  237 (299)
T PRK11453        158 GNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLG  237 (299)
T ss_pred             HHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677765544423  344556666655443322 2111110     113456778888999988765 6789999999


Q ss_pred             hcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc
Q 041338          185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT  235 (269)
Q Consensus       185 ~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~  235 (269)
                      +.++..+.++..++|++.++++++++||+++..+++|.+++++|+.+...+
T Consensus       238 ~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        238 RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999987643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.62  E-value=5.5e-06  Score=77.60  Aligned_cols=110  Identities=19%  Similarity=0.226  Sum_probs=97.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc--
Q 041338          159 RSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE--  236 (269)
Q Consensus       159 ~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~--  236 (269)
                      +++..++..-++++++.+-+.+.++.+.+++++++...+..+.|++++.+++++|.++++|.++++.+.|+.+...++  
T Consensus        89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence            345667777788899977799999999999999999999999999999999999999999999999999999987211  


Q ss_pred             ---------ccccHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041338          237 ---------ATFNWTGFCSAMASNVTNQSRNVFSKKFMVRK  268 (269)
Q Consensus       237 ---------~s~~~~G~~~alls~~~~al~~V~~Kkll~~~  268 (269)
                               .+-.+.|+..++++.++.++..|+.+|+++++
T Consensus       169 ~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s  209 (345)
T KOG2234|consen  169 PTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS  209 (345)
T ss_pred             CCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                     11247899999999999999999999999875

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.56  E-value=2e-06  Score=78.49  Aligned_cols=158  Identities=15%  Similarity=0.157  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHhh-------cCCcHHHHHHHHHHHHH-HHHHHHHHhhccCC-CC-------C-CHH--h--HHHHHHH
Q 041338          110 LNIYFNIFNKQVLK-------VFPYPTTVTAFQFGCGT-VMIILMWTLNLYAR-PK-------L-TRS--Q--FAVILPL  168 (269)
Q Consensus       110 ~si~~~i~nK~il~-------~f~~P~tLt~~q~~v~~-l~l~l~~~l~~~~~-~~-------l-s~~--~--~~~ll~l  168 (269)
                      ++..-++..|+.-+       .|..|+.-+.. |+.|- +|+.+....+.+.. +.       + +.+  .  -...++-
T Consensus        14 sGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~-mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~P   92 (372)
T KOG3912|consen   14 SGSFNTLVAKWADSIQAEGSPGFQHPVLQALL-MFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPP   92 (372)
T ss_pred             hccHHHHHHHHHHhhhhhCCCccccHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecCh
Confidence            33334467888765       25557765544 44454 45444333222110 10       1 111  1  2334567


Q ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccccc----------
Q 041338          169 AVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEAT----------  238 (269)
Q Consensus       169 gll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s----------  238 (269)
                      +++-..+..+.+.++.+++++..|+++....+|+.+++..+++++++.++|+|+..+++|++++...|..          
T Consensus        93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s  172 (372)
T KOG3912|consen   93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYS  172 (372)
T ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccc
Confidence            8888889999999999999999999999999999999999999999999999999999999988765321          


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041338          239 FNWTGFCSAMASNVTNQSRNVFSKKFMVRK  268 (269)
Q Consensus       239 ~~~~G~~~alls~~~~al~~V~~Kkll~~~  268 (269)
                      --..|.++++++-+.-+.+-|.-+|.+++.
T Consensus       173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~~  202 (372)
T KOG3912|consen  173 SIITGDLLIIIAQIIVAIQMVCEEKQLKKS  202 (372)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            125799999999999999999999887653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.54  E-value=8.4e-07  Score=81.36  Aligned_cols=124  Identities=15%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHH-hhccCCCC---------CCHHhHHH-HHHHHH-HHHHH
Q 041338          110 LNIYFNIFNKQVLK--VFPYPTTVTAFQFGCGTVMIILMWT-LNLYARPK---------LTRSQFAV-ILPLAV-AHTLG  175 (269)
Q Consensus       110 ~si~~~i~nK~il~--~f~~P~tLt~~q~~v~~l~l~l~~~-l~~~~~~~---------ls~~~~~~-ll~lgl-l~~~~  175 (269)
                      +...+.++.|+..+  +++ |..++.+|+..+.+++.+... .+......         ........ .+..++ .+...
T Consensus       156 ~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (302)
T TIGR00817       156 TFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFY  234 (302)
T ss_pred             HHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Confidence            33446678888887  677 999999999988887766532 22111000         00001111 112222 12223


Q ss_pred             HHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          176 NLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       176 ~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      +.+.+.+++++++..++++..++|+++++++++++||+++..+++|.+++++|+.+...
T Consensus       235 ~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       235 QQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999998764

specificities overlap.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.54  E-value=5.7e-06  Score=75.71  Aligned_cols=155  Identities=17%  Similarity=0.201  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-HHhhccCCC---CCCHHhHHHHHHHHHHHHHHHH
Q 041338          102 GMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILM-WTLNLYARP---KLTRSQFAVILPLAVAHTLGNL  177 (269)
Q Consensus       102 ~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~-~~l~~~~~~---~ls~~~~~~ll~lgll~~~~~~  177 (269)
                      ..-.+|..    .-++.|. ++..+ +..+.+.|...+..++.+. ...++.+..   ..+++.+..++..+++.+....
T Consensus        14 ~Ay~lwG~----lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~   87 (293)
T COG2962          14 LAYLLWGL----LPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWW   87 (293)
T ss_pred             HHHHHHHH----HHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            33445544    3445665 56678 8899999999888776543 222322111   1123344445555555666667


Q ss_pred             HHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHH
Q 041338          178 LTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEATFNWTGFCSAMASNVTNQSR  257 (269)
Q Consensus       178 l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~s~~~~G~~~alls~~~~al~  257 (269)
                      .+.+|..+-.+-.+++-....|++.++++.+++|||+++.+++++++..+||..-.+...++.|..+.    =+++|+.|
T Consensus        88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~----la~sf~~Y  163 (293)
T COG2962          88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALA----LALSFGLY  163 (293)
T ss_pred             HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH----HHHHHHHH
Confidence            99999999888889999999999999999999999999999999999999999988777788876544    46788888


Q ss_pred             HHHHHhhcc
Q 041338          258 NVFSKKFMV  266 (269)
Q Consensus       258 ~V~~Kkll~  266 (269)
                      ...-|++--
T Consensus       164 gl~RK~~~v  172 (293)
T COG2962         164 GLLRKKLKV  172 (293)
T ss_pred             HHHHHhcCC
Confidence            887776543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.48  E-value=1.1e-06  Score=80.07  Aligned_cols=70  Identities=16%  Similarity=0.141  Sum_probs=61.7

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhh
Q 041338          162 FAVILPLAVA-HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVAL  231 (269)
Q Consensus       162 ~~~ll~lgll-~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l  231 (269)
                      +..++.++.+ ..+++.+++.++++.+++.+..+.+++|++.++++++++||++++.+++|.+++++|+.+
T Consensus       210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            4444555555 456788999999999999999999999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.45  E-value=6.8e-06  Score=75.46  Aligned_cols=70  Identities=19%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          164 VILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       164 ~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      .++..++...+++.+.+.++++.+++.++++..++|++.+++++++++|+++..++.|.+++++|+.+..
T Consensus       215 ~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        215 LLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            3444555556678999999999999999999999999999999999999999999999999988887764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.44  E-value=1.1e-05  Score=64.33  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          172 HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       172 ~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      +.....+...+++++|++.+..+-++.++++++++++++||++++++++|+.++++|+++..
T Consensus        47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            45577899999999999999999999999999999999999999999999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.39  E-value=3.7e-05  Score=68.34  Aligned_cols=119  Identities=24%  Similarity=0.336  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhcCCcHHHHHH-HHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHhhcCHHH
Q 041338          113 YFNIFNKQVLKVFPYPTTVTA-FQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTL-GNLLTNISLVTVNVSF  190 (269)
Q Consensus       113 ~~~i~nK~il~~f~~P~tLt~-~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~-~~~l~n~AL~~vsvs~  190 (269)
                      .+.+.+|++. ..+ +..... +++. +...+.......... ...+.+.+..+..+|++.++ ++.+.+.+++..+++.
T Consensus       168 ~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~  243 (292)
T COG0697         168 LYTALVKRLS-RLG-PVTLALLLQLL-LALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASL  243 (292)
T ss_pred             HHHHHHHHhc-CCC-hHHHHHHHHHH-HHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence            3556777776 444 666665 5555 222222222121111 23456778888888988774 8899999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc
Q 041338          191 THTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT  235 (269)
Q Consensus       191 ~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~  235 (269)
                      .+++..++|++.+++++++++|+++..++.|.+++++|+.+....
T Consensus       244 ~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         244 VALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999987643

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.34  E-value=5.2e-07  Score=78.66  Aligned_cols=107  Identities=20%  Similarity=0.274  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc--ccc
Q 041338          162 FAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE--ATF  239 (269)
Q Consensus       162 ~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~--~s~  239 (269)
                      .+...|..++.++.++.+..++++++++-++-+.++.-.|+.+++++.+|+++..-+.++.++.+.|+++..+.|  ...
T Consensus        53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~  132 (290)
T KOG4314|consen   53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD  132 (290)
T ss_pred             eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence            455678888889999999999999999999999999999999999999999999999999999999999988643  445


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041338          240 NWTGFCSAMASNVTNQSRNVFSKKFMVRK  268 (269)
Q Consensus       240 ~~~G~~~alls~~~~al~~V~~Kkll~~~  268 (269)
                      .+.|+.+++.+++..++|.|..|+...+.
T Consensus       133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  133 EIIGIACAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            79999999999999999999999987653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.33  E-value=5.6e-05  Score=61.93  Aligned_cols=125  Identities=17%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHhhc------CCcHHHHHHHHHHHHHHHHHHHHHh-hccCC----C-----CC--CHHhHHHHHHHHH
Q 041338          109 LLNIYFNIFNKQVLKV------FPYPTTVTAFQFGCGTVMIILMWTL-NLYAR----P-----KL--TRSQFAVILPLAV  170 (269)
Q Consensus       109 ~~si~~~i~nK~il~~------f~~P~tLt~~q~~v~~l~l~l~~~l-~~~~~----~-----~l--s~~~~~~ll~lgl  170 (269)
                      .+.....++.|+.++.      -..|+.+..+.-..+.+++.+.+.. +..+.    .     +.  +.+.+..++..|+
T Consensus        10 ~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (153)
T PF03151_consen   10 LFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGL   89 (153)
T ss_pred             HHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHH
Confidence            4555667778887765      2238888888777777777665432 22110    0     00  1233445555566


Q ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          171 AHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       171 l~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      +..+.+...+..++++++-.++++..+..+.+.++++++++|+++..+++|+++.++|+++-.
T Consensus        90 ~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   90 LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            666778899999999999999999999999999999999999999999999999999987643

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.28  E-value=3e-07  Score=83.27  Aligned_cols=154  Identities=19%  Similarity=0.225  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 041338          108 YLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPL-AVAHTLGNLLTNISLVTV  186 (269)
Q Consensus       108 ~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~l-gll~~~~~~l~n~AL~~v  186 (269)
                      |.+|....+..|-..  ++ |..+.-.|+.+-.+...++...  ++.+-+-++..+.++.+ |+....+..+.++|++|.
T Consensus        47 ~ff~~~~vv~t~~~e--~~-p~e~a~~r~l~~mlit~pcliy--~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~m  121 (346)
T KOG4510|consen   47 YFFNSCMVVSTKVLE--ND-PMELASFRLLVRMLITYPCLIY--YMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYM  121 (346)
T ss_pred             HHHhhHHHhhhhhhc--cC-hhHhhhhhhhhehhhhheEEEE--EeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhc
Confidence            456665555555442  45 8888877765554444333111  11111112222333333 566667788999999999


Q ss_pred             CHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc-----cc---------ccccHHHHHHHHHHHH
Q 041338          187 NVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL-----TE---------ATFNWTGFCSAMASNV  252 (269)
Q Consensus       187 svs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~-----~~---------~s~~~~G~~~alls~~  252 (269)
                      +.+-+.+|..++|+|+.+++++++||+++....++..+.+.||+++.-     ++         .+.+..|...++.+++
T Consensus       122 slaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~l  201 (346)
T KOG4510|consen  122 SLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVL  201 (346)
T ss_pred             chhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHh
Confidence            999999999999999999999999999999999999999999999863     21         1224567777777777


Q ss_pred             HHHHHHHHHHhhcc
Q 041338          253 TNQSRNVFSKKFMV  266 (269)
Q Consensus       253 ~~al~~V~~Kkll~  266 (269)
                      +-+.--++.+++=+
T Consensus       202 f~asvyIilR~iGk  215 (346)
T KOG4510|consen  202 FGASVYIILRYIGK  215 (346)
T ss_pred             hhhhHHHHHHHhhc
Confidence            76665565555533

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.27  E-value=4.7e-05  Score=71.87  Aligned_cols=123  Identities=12%  Similarity=0.063  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHHHHH-hhccC-C-------CCCCHHhHHHHHHHHHHHH
Q 041338          110 LNIYFNIFNKQVLKVF-------PYPTTVTAFQFGCGTVMIILMWT-LNLYA-R-------PKLTRSQFAVILPLAVAHT  173 (269)
Q Consensus       110 ~si~~~i~nK~il~~f-------~~P~tLt~~q~~v~~l~l~l~~~-l~~~~-~-------~~ls~~~~~~ll~lgll~~  173 (269)
                      +....+++.|+.+++.       + +..+..+++.++.+++++... ....+ .       ...+...+..++...+...
T Consensus       205 ~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~  283 (350)
T PTZ00343        205 GSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSG  283 (350)
T ss_pred             HHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence            3345667888887643       3 556667778888887765432 21100 0       0011111122222222233


Q ss_pred             HHHHHHH----HHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          174 LGNLLTN----ISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       174 ~~~~l~n----~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      +.+.++|    ++++++++..+++...+.|+++++++++++||+++..+++|.+++++|+.+..
T Consensus       284 l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        284 VWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            3444555    69999999999999999999999999999999999999999999999998754

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.25  E-value=2.5e-05  Score=71.81  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH---HHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHH
Q 041338           95 IQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFG---CGTVMIILMWTLNLYARPKLTRSQFAVILPLAVA  171 (269)
Q Consensus        95 ~~~~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~---v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll  171 (269)
                      ++-+..+++..+-|.+   +.+.+|..  +++ |...++.|+.   +++++....+  + +.+|. ..+..+..+..|++
T Consensus       151 ~~Gi~~~l~sg~~y~~---~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~Gi~  220 (290)
T TIGR00776       151 KKGILLLLMSTIGYLV---YVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--I-LAKPL-KKYAILLNILPGLM  220 (290)
T ss_pred             hhHHHHHHHHHHHHHH---HHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--h-cccch-HHHHHHHHHHHHHH
Confidence            4455555555555543   44567764  366 8888666654   3333332222  1 11222 23344445558888


Q ss_pred             HHHHHHHHHHHHh-hcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHH----HHHHHHHHhhhhhc
Q 041338          172 HTLGNLLTNISLV-TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLA----SSLVPIVGGVALAS  233 (269)
Q Consensus       172 ~~~~~~l~n~AL~-~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~----lgl~lii~GV~l~~  233 (269)
                      +..++.++..+.+ +++++.+.++...+|+..+++++++++|+.+++++    +|.++++.|+.+..
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            8778889999999 99999999999999999999999999999999999    99999999998864

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.91  E-value=0.0001  Score=60.30  Aligned_cols=71  Identities=21%  Similarity=0.139  Sum_probs=61.7

Q ss_pred             HHHHHHH-HHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHH--hhCCCCCHHHHHHHHHHHHhhhhhccc
Q 041338          165 ILPLAVA-HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAAL--FLGEKPTIWLASSLVPIVGGVALASLT  235 (269)
Q Consensus       165 ll~lgll-~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l--~lgEr~t~~~~lgl~lii~GV~l~~~~  235 (269)
                      ++.+|++ +.+...+.+.++++.+++.+.-+-+..++++.+.++.  ++||++++.+++|++++++|+.++..+
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            4556665 5567889999999999999999999998888888885  899999999999999999999998643

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.75  E-value=0.00083  Score=60.79  Aligned_cols=119  Identities=15%  Similarity=0.155  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHhhcCHH
Q 041338          111 NIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAHTL-GNLLTNISLVTVNVS  189 (269)
Q Consensus       111 si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~~~-~~~l~n~AL~~vsvs  189 (269)
                      ...|++..|.+=+.-|-+.+ +.+-|.+++++.+++-.. +-...-.+++-...-+.+|++.+. -+.+...++...+..
T Consensus       160 Wa~YIv~G~r~g~~~~g~~g-~a~gm~vAaviv~Pig~~-~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~  237 (292)
T COG5006         160 WALYIVLGQRAGRAEHGTAG-VAVGMLVAALIVLPIGAA-QAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPAR  237 (292)
T ss_pred             HHHHHHHcchhcccCCCchH-HHHHHHHHHHHHhhhhhh-hcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChh
Confidence            34466677777655553444 456677888777654211 111111233444444556666544 467999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhh
Q 041338          190 FTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVAL  231 (269)
Q Consensus       190 ~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l  231 (269)
                      ...++.++||.+..+.++++++|.+|..+|++++.++.+.+=
T Consensus       238 ~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG  279 (292)
T COG5006         238 TFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG  279 (292)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999887663

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=97.69  E-value=3.1e-05  Score=70.64  Aligned_cols=134  Identities=13%  Similarity=0.188  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHhhhhHHHHHHHH
Q 041338          129 TTVTAFQFGCGTVMIILMWTLNL-YARPKLTRSQFAVILPLAVAHTLGNLLTNISLVT-VNVSFTHTIKAMEPFFTVLFA  206 (269)
Q Consensus       129 ~tLt~~q~~v~~l~l~l~~~l~~-~~~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~-vsvs~~~iikal~Pvftvils  206 (269)
                      ..+|+.||.+-++--++.. .+. ..++++..+++.   .+-..+-..+.+.|.++++ ++.+.+.++++-.++-+++++
T Consensus        34 NLITFaqFlFia~eGlif~-skf~~~k~kiplk~Y~---i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g  109 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFT-SKFFTVKPKIPLKDYA---ITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG  109 (330)
T ss_pred             eehHHHHHHHHHHhceeee-ccccccCCCCchhhhh---eehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence            4789999987766544321 111 123555444443   3333344557899999996 899999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHhhhhhccc---cc--------------ccc--HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041338          207 ALFLGEKPTIWLASSLVPIVGGVALASLT---EA--------------TFN--WTGFCSAMASNVTNQSRNVFSKKFMV  266 (269)
Q Consensus       207 ~l~lgEr~t~~~~lgl~lii~GV~l~~~~---~~--------------s~~--~~G~~~alls~~~~al~~V~~Kkll~  266 (269)
                      ++++|+|++.+++.+++++.+|+++++..   |.              .+.  ..|+.+...+-+..+.-.++++...+
T Consensus       110 ~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~  188 (330)
T KOG1583|consen  110 WILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ  188 (330)
T ss_pred             HHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988642   11              011  26888888888888887777776654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.64  E-value=0.001  Score=53.85  Aligned_cols=69  Identities=16%  Similarity=0.365  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          166 LPLAVAHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       166 l~lgll~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      +..-+++.....+...++++++++.+.-+ ....-+.+++.+.+++||++++.+++++.++++|+++...
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            33445567778899999999999998877 4689999999999999999999999999999999988754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.59  E-value=0.0031  Score=58.13  Aligned_cols=134  Identities=13%  Similarity=0.248  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHh---hccC-CCC---CCHHhHHHHHHHHHHH
Q 041338          101 GGMFGLWYLLNIYFNIFNKQVLKVFP-YPTTVTAFQFGCGTVMIILMWTL---NLYA-RPK---LTRSQFAVILPLAVAH  172 (269)
Q Consensus       101 ~~l~~~W~~~si~~~i~nK~il~~f~-~P~tLt~~q~~v~~l~l~l~~~l---~~~~-~~~---ls~~~~~~ll~lgll~  172 (269)
                      .+++.+...+......+.|++++.++ .|..+.++.-+++.++..+....   +... ..+   ..++.+..++..++..
T Consensus       156 ~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~  235 (303)
T PF08449_consen  156 IILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTG  235 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence            44455555666777788999998653 27777777777777766543222   1111 000   1123455666667777


Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          173 TLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       173 ~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      ..+..+.+.-.++.++-...++..+--+++++++.+++++++++.+|.|+++++.|..+-..
T Consensus       236 ~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  236 ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            77777777778999999999999999999999999999999999999999999999987654

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.57  E-value=0.0016  Score=59.69  Aligned_cols=112  Identities=25%  Similarity=0.272  Sum_probs=90.8

Q ss_pred             CCCCCCH--HhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh-hhhHHHHHHHHHHhhCCCCCHHHH----HHHHHH
Q 041338          153 ARPKLTR--SQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIK-AMEPFFTVLFAALFLGEKPTIWLA----SSLVPI  225 (269)
Q Consensus       153 ~~~~ls~--~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iik-al~Pvftvils~l~lgEr~t~~~~----lgl~li  225 (269)
                      .+|..+.  ..+..-+.-|++.+.+...++.|++++.+|.+.=+. .+.-+.+.+.+++++||..+...+    ++++++
T Consensus        34 ~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~li  113 (269)
T PF06800_consen   34 RQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLI  113 (269)
T ss_pred             hCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Confidence            4455553  667777788999999999999999999999887555 568888999999999999987665    488899


Q ss_pred             HHhhhhhcccccc--------ccHHHHHHHHHHHHHHHHHHHHHHhh
Q 041338          226 VGGVALASLTEAT--------FNWTGFCSAMASNVTNQSRNVFSKKF  264 (269)
Q Consensus       226 i~GV~l~~~~~~s--------~~~~G~~~alls~~~~al~~V~~Kkl  264 (269)
                      ++|+.+.+..|.+        ....|+...+++.+.|..|.+..|-.
T Consensus       114 iiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~  160 (269)
T PF06800_consen  114 IIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF  160 (269)
T ss_pred             HHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998875421        12579999999999999999987753

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.51  E-value=0.0024  Score=50.83  Aligned_cols=66  Identities=15%  Similarity=0.194  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          169 AVAHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       169 gll~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      -+++.+...+...+++++|++.+.-+ ....-+.+++.+++++||++++.+++|+.++++|+++...
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34456677788999999999998877 4578899999999999999999999999999999998754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.41  E-value=0.0064  Score=48.38  Aligned_cols=67  Identities=10%  Similarity=0.053  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhh
Q 041338          166 LPLAVAHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALA  232 (269)
Q Consensus       166 l~lgll~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~  232 (269)
                      +..-+.+...+.+...+++++|++.+--+ ...--+.+++.+.+++||++++.+++++.++++|++..
T Consensus        39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            33444566677888999999999987544 44788889999999999999999999999999999875

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.39  E-value=0.005  Score=48.66  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHh-hhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          167 PLAVAHTLGNLLTNISLVTVNVSFTHTIK-AMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       167 ~lgll~~~~~~l~n~AL~~vsvs~~~iik-al~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      ..-+++...+.+...+++++|++.+.-+- ..--+.+++.+++++||++++.+++++.++++|++...
T Consensus        34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            33445667788889999999999876554 47889999999999999999999999999999999864

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.33  E-value=0.012  Score=55.58  Aligned_cols=140  Identities=15%  Similarity=0.137  Sum_probs=88.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-HHhhccCCCCC--CHHhHHHHHH
Q 041338           91 PSAAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILM-WTLNLYARPKL--TRSQFAVILP  167 (269)
Q Consensus        91 ~~~~~~~~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~-~~l~~~~~~~l--s~~~~~~ll~  167 (269)
                      +.++...+.....+.++..    .+++.|+.+++.+ +......--+++.++..+. ..++...-.++  +.+.+..++.
T Consensus       164 ~~~i~GDll~l~~a~lya~----~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~  238 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAV----SNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVG  238 (334)
T ss_pred             CccchhHHHHHHHHHHHHH----HHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHH
Confidence            4455655555555555544    4456788887776 4433333333444444332 22222111222  2232222222


Q ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc
Q 041338          168 LAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT  235 (269)
Q Consensus       168 lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~  235 (269)
                      -++.......+....+++.++.+..+-..+..+++++++.+++|+++++.-++|.+++++|+++....
T Consensus       239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence            22222333457788888999988888888899999999999999999999999999999999987653

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.22  E-value=8.7e-06  Score=73.55  Aligned_cols=110  Identities=13%  Similarity=0.126  Sum_probs=92.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc-
Q 041338          159 RSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA-  237 (269)
Q Consensus       159 ~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~-  237 (269)
                      ...|+..+++|++-.-++.+-..|.||++....+++-+-..+.+++++|++++.|+++.+..|+++.++||.++...|. 
T Consensus        75 ~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~  154 (336)
T KOG2766|consen   75 KAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH  154 (336)
T ss_pred             HHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence            3457777888888777788888899999999999999988888999999999999999999999999999998765442 


Q ss_pred             ------ccc-HHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 041338          238 ------TFN-WTGFCSAMASNVTNQSRNVFSKKFMVRK  268 (269)
Q Consensus       238 ------s~~-~~G~~~alls~~~~al~~V~~Kkll~~~  268 (269)
                            +-| .+|.+++++++-+|+..|+..+-+.++.
T Consensus       155 agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~  192 (336)
T KOG2766|consen  155 AGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA  192 (336)
T ss_pred             cccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC
Confidence                  123 5899999999999999988777666654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.15  E-value=0.018  Score=52.86  Aligned_cols=130  Identities=18%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHhHHHHHHHHHHH
Q 041338           93 AAIQTLQLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVILPLAVAH  172 (269)
Q Consensus        93 ~~~~~~~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls~~~~~~ll~lgll~  172 (269)
                      ..++.+...++-.+-|..   |....|..  +.+ |+...+-| .+|.++..+++.... +++..+++ .+.-+.-|+++
T Consensus       135 ~~~kgi~~Ll~stigy~~---Y~~~~~~~--~~~-~~~~~lPq-aiGm~i~a~i~~~~~-~~~~~~k~-~~~nil~G~~w  205 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWI---YSVIPKAF--HVS-GWSAFLPQ-AIGMLIGAFIFNLFS-KKPFFEKK-SWKNILTGLIW  205 (269)
T ss_pred             chhhHHHHHHHHHHHHHH---HHHHHHhc--CCC-hhHhHHHH-HHHHHHHHHHHhhcc-cccccccc-hHHhhHHHHHH
Confidence            345545544444443332   44455552  344 66666555 344444433322211 22222233 34445689999


Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHH----HHHHHHHHhhhh
Q 041338          173 TLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLA----SSLVPIVGGVAL  231 (269)
Q Consensus       173 ~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~----lgl~lii~GV~l  231 (269)
                      ..++.++..|.+.+.++..-.+..+..+...+.+.+++||+=+++++    +|+++++.|.++
T Consensus       206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999887754    556666666543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.0041  Score=49.20  Aligned_cols=68  Identities=22%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHH-HHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          167 PLAVAHTLGNLLTNISLVTVNVSFTH-TIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       167 ~lgll~~~~~~l~n~AL~~vsvs~~~-iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      ..-+++...+.+...+++++|++.+- +-...-.+.+++.+++++||+.+..+++++.++++|++..-.
T Consensus        35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            34445666788889999999999864 556678899999999999999999999999999999987643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.98  E-value=0.063  Score=49.56  Aligned_cols=124  Identities=15%  Similarity=0.072  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-HHhhccCC-CC-CCHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041338          109 LLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILM-WTLNLYAR-PK-LTRSQFAVILPLAVAHTLGNLLTNISLVT  185 (269)
Q Consensus       109 ~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~-~~l~~~~~-~~-ls~~~~~~ll~lgll~~~~~~l~n~AL~~  185 (269)
                      +++.+..-.-|+.+ ..+ +.+=-..++..-....++. +....... .. -....+..+...|...+....++..|-+.
T Consensus       157 a~sf~~Ygl~RK~~-~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~  234 (293)
T COG2962         157 ALSFGLYGLLRKKL-KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKR  234 (293)
T ss_pred             HHHHHHHHHHHHhc-CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence            33433333344433 244 5555556666555544332 21211111 00 12345666667778888888899999999


Q ss_pred             cCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          186 VNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       186 vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      ++.+...++.+.+|....+++.+++||.++..++.+.+++-+|+++...
T Consensus       235 lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         235 LPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988764

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.83  E-value=0.014  Score=44.86  Aligned_cols=55  Identities=15%  Similarity=0.165  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 041338          171 AHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPI  225 (269)
Q Consensus       171 l~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~li  225 (269)
                      ++.....+...++++++++.+.-+ ..+..+.+++.+.+++||+++..+++|+.++
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            566778899999999999998554 5689999999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.79  E-value=0.097  Score=43.17  Aligned_cols=115  Identities=16%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 041338          116 IFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYA-RPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTI  194 (269)
Q Consensus       116 i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~-~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~ii  194 (269)
                      .+|-++-+....|+.-+++-+.++.+.+.+.+.....+ ..+....+|+.++ -|++......+.++...++.++.+.++
T Consensus        18 ~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l   96 (138)
T PF04657_consen   18 AFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTIL   96 (138)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            34555444444599999999999998887665433221 1122222344433 566666677788889999988888776


Q ss_pred             hhh-hHHHHHHHHHH----hhCCCCCHHHHHHHHHHHHhhhh
Q 041338          195 KAM-EPFFTVLFAAL----FLGEKPTIWLASSLVPIVGGVAL  231 (269)
Q Consensus       195 kal-~Pvftvils~l----~lgEr~t~~~~lgl~lii~GV~l  231 (269)
                      .-. +-+..++++.+    .-++++++++.+|++++++|+.+
T Consensus        97 ~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   97 IVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            665 67777788876    35688999999999999999864

>TIGR00803 nst UDP-galactose transporter

Probab=96.67  E-value=0.026  Score=49.44  Aligned_cols=65  Identities=9%  Similarity=0.037  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhh
Q 041338          167 PLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVAL  231 (269)
Q Consensus       167 ~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l  231 (269)
                      .+.+..+.+..+..+.+++.+.....++..++++++.+++.++++|+++..+++|..+++.|+.+
T Consensus       157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            34455666667889999999999999999999999999999999999999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.60  E-value=0.0022  Score=58.60  Aligned_cols=76  Identities=20%  Similarity=0.322  Sum_probs=68.4

Q ss_pred             CHHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          158 TRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       158 s~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      .++|++.+.-+|++..++.++-.+++|-=-++-.++.+++.-+|.++...+|+++.||++.|.|.++++...+.+.
T Consensus       249 cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  249 CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence            5778888889999988889999999999999999999999999999999999999999999999888877666543

>TIGR00803 nst UDP-galactose transporter

Probab=96.53  E-value=0.0062  Score=53.38  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=68.8

Q ss_pred             cCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccccc---------------------------c
Q 041338          186 VNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTEA---------------------------T  238 (269)
Q Consensus       186 vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~~---------------------------s  238 (269)
                      ++++.....++..++++++.++.+.+|+++..++++.++++.|+.....++.                           +
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            5677888899999999999999999999999999999999999875322110                           1


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 041338          239 FNWTGFCSAMASNVTNQSRNVFSKKFMVRKE  269 (269)
Q Consensus       239 ~~~~G~~~alls~~~~al~~V~~Kkll~~~~  269 (269)
                      ..+.|....+.+.++.+...++.++.++++|
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~  112 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGD  112 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCC
Confidence            2367888888889999999999999887754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.42  E-value=0.008  Score=55.85  Aligned_cols=68  Identities=25%  Similarity=0.297  Sum_probs=60.7

Q ss_pred             HHHHHH-HHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          166 LPLAVA-HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       166 l~lgll-~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      ...|++ +.++..+...|+.+.|.+..+-+.++.-++.++++..++|||++++.+.|.+++++|++++.
T Consensus        53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            345544 55677899999999999999999999999999999999999999999999999999988754

>TIGR00688 rarD rarD protein

Probab=96.25  E-value=0.1  Score=46.41  Aligned_cols=50  Identities=8%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHh
Q 041338          160 SQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALF  209 (269)
Q Consensus       160 ~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~  209 (269)
                      ++|..++.+|++...++.+.+.++++.+++.++++.+++|+++++++.++
T Consensus       206 ~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       206 PIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            46777778887766688999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.19  E-value=0.016  Score=46.40  Aligned_cols=70  Identities=24%  Similarity=0.272  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhh
Q 041338          162 FAVILPLAVAHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALA  232 (269)
Q Consensus       162 ~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~  232 (269)
                      ++.++|..+ +..+.+.++..+.+.+.|.+.-+ +++.=+||++.++++.+|..+++.++|++++++|+.++
T Consensus        42 ~~y~ipf~l-Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   42 PKYIIPFLL-NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            445555544 44557788889999999998877 58899999999988888888999999999999999875

Many members are annotated as potential transmembrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.60  E-value=0.79  Score=43.56  Aligned_cols=102  Identities=15%  Similarity=0.202  Sum_probs=82.3

Q ss_pred             CHHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh-hhhHHHHHHHHHHhhCCCC---C----HHHHHHHHHHHHhh
Q 041338          158 TRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIK-AMEPFFTVLFAALFLGEKP---T----IWLASSLVPIVGGV  229 (269)
Q Consensus       158 s~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iik-al~Pvftvils~l~lgEr~---t----~~~~lgl~lii~GV  229 (269)
                      +...+..-+.-|++.+.++.++..+++++.+|.+.-+. .+.-++..++..++++|-.   +    .....|++++++|+
T Consensus        69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi  148 (345)
T PRK13499         69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV  148 (345)
T ss_pred             CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence            45566666778889999999999999999999987554 5788999999999999765   2    33568899999999


Q ss_pred             hhhcc----ccc--------ccc-HHHHHHHHHHHHHHHHHHH
Q 041338          230 ALASL----TEA--------TFN-WTGFCSAMASNVTNQSRNV  259 (269)
Q Consensus       230 ~l~~~----~~~--------s~~-~~G~~~alls~~~~al~~V  259 (269)
                      ++...    .|.        +.| .+|++.++++.+.++.|+.
T Consensus       149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence            99876    332        133 5899999999999999994

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.96  E-value=1.4  Score=41.88  Aligned_cols=69  Identities=13%  Similarity=0.102  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHH---Hh-hhhHHHHHHHHHHhhCCCCC------HHHHHHHHHHHHhhhhhccc
Q 041338          166 LPLAVAHTLGNLLTNISLVTVNVSFTHT---IK-AMEPFFTVLFAALFLGEKPT------IWLASSLVPIVGGVALASLT  235 (269)
Q Consensus       166 l~lgll~~~~~~l~n~AL~~vsvs~~~i---ik-al~Pvftvils~l~lgEr~t------~~~~lgl~lii~GV~l~~~~  235 (269)
                      +.-|+....++.++.++-.++.+....+   +. ++.-++..+.+. ++||+=+      +..+++++++++|..+...+
T Consensus       264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            4556677778888888888775554444   55 555566666666 6998876      45678889999998887654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.92  E-value=0.12  Score=48.44  Aligned_cols=132  Identities=15%  Similarity=0.060  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----cCCcHHHHHHHHHHHHHHHHH-HHHHhhccCCC------CCCHHhHHHHHHHH
Q 041338          101 GGMFGLWYLLNIYFNIFNKQVLK----VFPYPTTVTAFQFGCGTVMII-LMWTLNLYARP------KLTRSQFAVILPLA  169 (269)
Q Consensus       101 ~~l~~~W~~~si~~~i~nK~il~----~f~~P~tLt~~q~~v~~l~l~-l~~~l~~~~~~------~ls~~~~~~ll~lg  169 (269)
                      ...+..+......-+++.|.++.    +.+ ++.+..++--++.++++ +.+........      ..+.. ....+..+
T Consensus       165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s  242 (316)
T KOG1441|consen  165 FISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNS  242 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHH
Confidence            44445555555667888999884    366 88888887777777776 54332111110      01111 22333444


Q ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          170 VAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       170 ll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      ++.-+.+...++.++.+++-++++...+--+++++.++++++++.++...+|.++.++|+.+-..
T Consensus       243 v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  243 VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            55555678899999999999999999999999999999999999999999999999999998653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.72  E-value=0.47  Score=44.24  Aligned_cols=131  Identities=14%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-HHhhccC----CC-----CCCHHhHHHHHHH
Q 041338           99 QLGGMFGLWYLLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILM-WTLNLYA----RP-----KLTRSQFAVILPL  168 (269)
Q Consensus        99 ~~~~l~~~W~~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~-~~l~~~~----~~-----~ls~~~~~~ll~l  168 (269)
                      .-..++..+.++-...+...+.+++.+.    ++.+|++++.=+...+ .......    .+     +.+++.++.++.+
T Consensus       172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k----~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  172 IGILLLFGYLLFDGFTNATQDSLFKKYK----VSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             HhHHHHHHHHHHHhhHHhHHHHHhccCC----ccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence            3355666666666667778888888665    5666766654333221 1111111    11     2246778889999


Q ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          169 AVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       169 gll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      +.+.+.+..+-+.-++.-.+-...+|.-+==+++.+++.+.++.+.+..+|+|..++++|+.+-.
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence            99988887655555565544455567777788899999999999999999999999999987643

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.63  E-value=2.4  Score=38.14  Aligned_cols=116  Identities=13%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCC--HHhHH-HHHHHHHHHHHHHHHHHHHHh
Q 041338          109 LLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILM-WTLNLYARPKLT--RSQFA-VILPLAVAHTLGNLLTNISLV  184 (269)
Q Consensus       109 ~~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~-~~l~~~~~~~ls--~~~~~-~ll~lgll~~~~~~l~n~AL~  184 (269)
                      .++..-.+++.+++++-+.|+.+--.|+.+.++++.+. ..........-.  .+.+- ..+.+-+.++.+-++...-+|
T Consensus       124 ~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~K  203 (244)
T PF04142_consen  124 FLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLK  203 (244)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHH
Confidence            45666678899999876557777777877665555332 222222111100  11111 122333456667778888899


Q ss_pred             hcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 041338          185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVP  224 (269)
Q Consensus       185 ~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~l  224 (269)
                      |.+.-.=....+.+.+.+.++++++++.+++....+|..+
T Consensus       204 yadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  204 YADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            9998888888889999999999999999999998887643

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.15  E-value=0.14  Score=48.00  Aligned_cols=67  Identities=16%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             HHHHH-HHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          167 PLAVA-HTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       167 ~lgll-~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      ..|++ +..|-...+.|+.+.|.+..+=+-++.-++.++++..+++|++++...+|+++.++|-.+..
T Consensus        68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            35555 56688899999999999999999999999999999999999999999999999999976654

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.01  E-value=8.6  Score=32.34  Aligned_cols=116  Identities=12%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---HHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH-
Q 041338          116 IFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLT---RSQFAVILPLAVAHTLGNLLTNISLVTVNVSFT-  191 (269)
Q Consensus       116 i~nK~il~~f~~P~tLt~~q~~v~~l~l~l~~~l~~~~~~~ls---~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~-  191 (269)
                      -+|-++-+....|+.-.+.-+.+|++++..+.... .+.+...   ...|+.++ -|++.....+........+.+..+ 
T Consensus        22 ~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~~~~~pwW~~~-GG~lGa~~vt~s~~l~p~lGa~~t~   99 (150)
T COG3238          22 AINGRLARYLGSPLLASLISFLVGTVLLLILLLIK-QGHPGLAAVASAPWWAWI-GGLLGAIFVTSSILLAPRLGAATTI   99 (150)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhhccCCchHHHH-ccchhhhhhhhhHHhccchhHHHHH
Confidence            35555555555699888999999998887654442 3333332   22344433 333333333333444444444443 


Q ss_pred             HHHhhhhHHHHHHHHHHh-h---CCCCCHHHHHHHHHHHHhhhhhc
Q 041338          192 HTIKAMEPFFTVLFAALF-L---GEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       192 ~iikal~Pvftvils~l~-l---gEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      .++-+-.-+..+++..+= +   ++++++.+++|++++++|+.++.
T Consensus       100 ~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238         100 ALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            344455677777777663 2   37889999999999999966553

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=88.98  E-value=0.86  Score=41.36  Aligned_cols=72  Identities=17%  Similarity=0.176  Sum_probs=61.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhh
Q 041338          160 SQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVAL  231 (269)
Q Consensus       160 ~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l  231 (269)
                      ..|+.+..+|+..+++.++-+.-..+-++-.-+++.-+--+|+++.++++++..++.++|+|.++++.|...
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            457778888888888888777777777777777777778899999999999999999999999999988765

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=88.28  E-value=7.7  Score=37.41  Aligned_cols=78  Identities=13%  Similarity=0.222  Sum_probs=63.0

Q ss_pred             HHhHHHHHHHHHHHHH-HHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcccc
Q 041338          159 RSQFAVILPLAVAHTL-GNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLTE  236 (269)
Q Consensus       159 ~~~~~~ll~lgll~~~-~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~~  236 (269)
                      ..+...++..++..+. .=+++.+|....++-.+++-..++....++...++-++.+++..++|.+++++|-+++.+.+
T Consensus       314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            3445555566655544 45788899999998888888888777799999999999999999999999999999887643

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=87.81  E-value=0.48  Score=43.12  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHH----HHHHHHHHhhhh
Q 041338          159 RSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLA----SSLVPIVGGVAL  231 (269)
Q Consensus       159 ~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~----lgl~lii~GV~l  231 (269)
                      .++.+.-+..|+..+.++.++..|-+.+.+++.-.+..+.-+...+...+++|||=|.+++    .|+++++.|..+
T Consensus       206 ~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~  282 (288)
T COG4975         206 NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL  282 (288)
T ss_pred             HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence            3444555667899999999999999999988888888888888999999999999998876    455555555444

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=87.28  E-value=15  Score=35.01  Aligned_cols=103  Identities=20%  Similarity=0.273  Sum_probs=76.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCC-------CCCHHHHHHHHHHHHhhh
Q 041338          159 RSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGE-------KPTIWLASSLVPIVGGVA  230 (269)
Q Consensus       159 ~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgE-------r~t~~~~lgl~lii~GV~  230 (269)
                      .+.+......|++...+.+.+-.+++|+.+|..+-| ..+.-++..++-.++.++       +-....++|+++.++|++
T Consensus        70 ~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa  149 (344)
T PF06379_consen   70 ASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA  149 (344)
T ss_pred             hhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence            345666677888888888899999999999887644 446666666666665443       223567899999999999


Q ss_pred             hhcc----cc-------ccccH-HHHHHHHHHHHHHHHHHHHH
Q 041338          231 LASL----TE-------ATFNW-TGFCSAMASNVTNQSRNVFS  261 (269)
Q Consensus       231 l~~~----~~-------~s~~~-~G~~~alls~~~~al~~V~~  261 (269)
                      +...    +|       .++|. +|++.++++.+..+..++-.
T Consensus       150 i~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~  192 (344)
T PF06379_consen  150 ICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGL  192 (344)
T ss_pred             HHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            8763    12       13443 89999999999999988754

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=86.50  E-value=12  Score=33.97  Aligned_cols=121  Identities=8%  Similarity=0.053  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHH-HHhhccCCC----CCCHHhHHHHHHHHHHHHHHHHHHHH
Q 041338          109 LLNIYFNIFNKQVLK--VFPYPTTVTAFQFGCGTVMIILM-WTLNLYARP----KLTRSQFAVILPLAVAHTLGNLLTNI  181 (269)
Q Consensus       109 ~~si~~~i~nK~il~--~f~~P~tLt~~q~~v~~l~l~l~-~~l~~~~~~----~ls~~~~~~ll~lgll~~~~~~l~n~  181 (269)
                      ..+..+.+..|+..+  ++. -..-.++.-..+..+++.+ .....+...    .++.+....+++-|++..+...+..|
T Consensus       165 lssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saW  243 (309)
T COG5070         165 LSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAW  243 (309)
T ss_pred             HhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccce
Confidence            344555566666554  444 3344566666666655443 233322221    12334455666666666666779999


Q ss_pred             HHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhh
Q 041338          182 SLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVA  230 (269)
Q Consensus       182 AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~  230 (269)
                      .+.-.+...++++.++.-.-..+.+.++++|..++....++++.....+
T Consensus       244 cvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~  292 (309)
T COG5070         244 CVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGA  292 (309)
T ss_pred             eEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999988899999999999999999988877664433

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=84.17  E-value=40  Score=32.17  Aligned_cols=123  Identities=11%  Similarity=0.116  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH-HHHHHhhccCCCCCCH---H-hHHHHHHHHHHHHHHHHHHHHHHh
Q 041338          110 LNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMI-ILMWTLNLYARPKLTR---S-QFAVILPLAVAHTLGNLLTNISLV  184 (269)
Q Consensus       110 ~si~~~i~nK~il~~f~~P~tLt~~q~~v~~l~l-~l~~~l~~~~~~~ls~---~-~~~~ll~lgll~~~~~~l~n~AL~  184 (269)
                      ++....++..++++.-+-+..+-=.|+.+-.++. ++.......++.. ..   + .-+..+.+-+.++.+-.+...-++
T Consensus       194 ~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~-~~gff~G~s~~vw~vVl~~a~gGLlvs~v~K  272 (345)
T KOG2234|consen  194 LSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN-EYGFFYGYSSIVWLVVLLNAVGGLLVSLVMK  272 (345)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc-cCCccccccHHHHHHHHHHhccchhHHHHHH
Confidence            4555567888888765546666666766444433 3322221111111 10   1 112223334445556666667778


Q ss_pred             hcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhc
Q 041338          185 TVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALAS  233 (269)
Q Consensus       185 ~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~  233 (269)
                      |.+--+-....++..+++.+.++.+++.++|..-.+|..+++..+.+-.
T Consensus       273 yADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~  321 (345)
T KOG2234|consen  273 YADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS  321 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence            8776666666778899999999999999999999999999988888765

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=82.06  E-value=24  Score=28.04  Aligned_cols=55  Identities=18%  Similarity=0.240  Sum_probs=36.1

Q ss_pred             HHHHHHhhcCHHHHHHHhhh-hHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhh
Q 041338          178 LTNISLVTVNVSFTHTIKAM-EPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALA  232 (269)
Q Consensus       178 l~n~AL~~vsvs~~~iikal-~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~  232 (269)
                      ..-.+.+.-+.+--.++.=. +-..-+.++.+++||++++....|.+.++++|.++
T Consensus        51 ANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   51 ANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             chhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            44455555444433333322 23334567888999999999999999998887654

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=80.37  E-value=0.18  Score=45.76  Aligned_cols=111  Identities=22%  Similarity=0.159  Sum_probs=83.8

Q ss_pred             CCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh-hhhHHHHHHHHHHhhCCCCCHHHH----HHHHHHHH
Q 041338          153 ARPKLTRSQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIK-AMEPFFTVLFAALFLGEKPTIWLA----SSLVPIVG  227 (269)
Q Consensus       153 ~~~~ls~~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iik-al~Pvftvils~l~lgEr~t~~~~----lgl~lii~  227 (269)
                      ..|.++...+..-+.-|++.+.+...++.|.+++.+|.+.=+. .+.-+-+.+++++.++|..+..+.    .++++++.
T Consensus        50 ~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAlilivi  129 (288)
T COG4975          50 VSPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVI  129 (288)
T ss_pred             ecCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHH
Confidence            4566677777666777888889999999999999999886544 467778889999999999987754    67888999


Q ss_pred             hhhhhccccc--------cccHHHHHHHHHHHHHHHHHHHHHHh
Q 041338          228 GVALASLTEA--------TFNWTGFCSAMASNVTNQSRNVFSKK  263 (269)
Q Consensus       228 GV~l~~~~~~--------s~~~~G~~~alls~~~~al~~V~~Kk  263 (269)
                      |+.+.++.|.        +.--.|+...+.+.+.|..|-|..+.
T Consensus       130 G~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~  173 (288)
T COG4975         130 GIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQL  173 (288)
T ss_pred             hheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeecc
Confidence            9999887542        11136777777777777777665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 49/290 (16%), Positives = 84/290 (28%), Gaps = 89/290 (30%)

Query: 14  PILKRRFCLILSSSSLEPADLAFSRGV-----SCL--QTSR---------FGSF------ 51
           P LK R  L      L PA      GV     + +               F  F      
Sbjct: 136 PYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 52  --TPLSARISSSLKCLNQRYHNLKARAGTASVPDSVDETPEPSAAIQTLQLGGMFGLW-Y 108
             +P      + L+ L +  + +       S  D          +IQ  +L  +     Y
Sbjct: 192 CNSP-----ETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPY 243

Query: 109 ---LLNIYFNIFNKQVLKVFPYPTTVTAFQFGCGTVMIILMWTLNLYARPKLTRSQFAVI 165
              LL +  N+ N +            AF   C  ++               TR +  V 
Sbjct: 244 ENCLL-VLLNVQNAKAWN---------AFNLSCKILLT--------------TRFK-QVT 278

Query: 166 LPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWL---ASSL 222
             L+ A T     T+ISL   +++ T   +        L    +L  +P   L     + 
Sbjct: 279 DFLSAATT-----THISLDHHSMTLTPD-EVKS-----LL-LKYLDCRPQD-LPREVLTT 325

Query: 223 VPIVGGVALASLTEATFNWTGF--------CSAMASNVTNQSRNVFSKKF 264
            P    +   S+ +    W  +         + + S++       + K F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.49
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.39

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.49  E-value=2.1e-06  Score=66.94  Aligned_cols=67  Identities=15%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc
Q 041338          169 AVAHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT  235 (269)
Q Consensus       169 gll~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~  235 (269)
                      .+++.+...+...++++++++.+..+ .++.|+++++++++++||++++.+++|++++++|+++....
T Consensus        37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34466778899999999999999888 89999999999999999999999999999999999987653

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.39  E-value=9.5e-07  Score=71.82  Aligned_cols=68  Identities=15%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             HHHHH-HHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338          167 PLAVA-HTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL  234 (269)
Q Consensus       167 ~lgll-~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~  234 (269)
                      .++++ +.+..++.+.++++++++.+..+ .++.|+++++++++++||++++.+++|++++++||++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34444 56678899999999999999888 8999999999999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00