Citrus Sinensis ID: 041347

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MARRTITQPYNPALDLPVSCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRGH
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHccc
marrtitqpynpaldlpvscrparlgnglQNRQAIVHSLAHTESWAIDLSWDIIARfgkqkamprEFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISrfrnggdneTAELLERVVYREEITHCAARVRWFRYLCLrsgyptllqdslapleseagengctteENEEFIQNFRAMVRTHFRGH
marrtitqpynpaldlpvsCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAisrfrnggdnetAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRGH
MARRTITQPYNPALDLPVSCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESeagengctteeneeFIQNFRAMVRTHFRGH
*************LDLPVSCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQD**********************I*NF***********
****TIT*PYNPAL********************IVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDS***************EENEEFIQNFRAMVRTHFRG*
MARRTITQPYNPALDLPVSCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRGH
*******QPYNPALDLPVSCR*****NGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFR**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARRTITQPYNPALDLPVSCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
224113181 314 predicted protein [Populus trichocarpa] 0.973 0.585 0.576 9e-66
225449655 310 PREDICTED: uncharacterized protein HI_00 0.973 0.593 0.582 6e-64
15238192 291 uncharacterized protein [Arabidopsis tha 0.910 0.591 0.529 2e-58
296090377289 unnamed protein product [Vitis vinifera] 0.862 0.564 0.544 5e-58
357463869 300 hypothetical protein MTR_3g091130 [Medic 0.936 0.59 0.550 9e-58
449441820 301 PREDICTED: uncharacterized protein HI_00 0.936 0.588 0.523 3e-57
449493255 301 PREDICTED: uncharacterized protein HI_00 0.936 0.588 0.519 7e-57
297810539287 oxidoreductase/ transition metal ion bin 0.910 0.599 0.525 7e-57
356516033 304 PREDICTED: uncharacterized protein HI_00 0.925 0.575 0.521 3e-52
255635209232 unknown [Glycine max] 0.820 0.668 0.557 1e-48
>gi|224113181|ref|XP_002316417.1| predicted protein [Populus trichocarpa] gi|222865457|gb|EEF02588.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  254 bits (650), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 136/236 (57%), Positives = 152/236 (64%), Gaps = 52/236 (22%)

Query: 5   TITQPYNPALDLPVSCRPARLGN----------------GLQNRQAIVHSLAHTESWAID 48
           +I Q YNP+LD PV  RPARL N                 LQ+RQAIVHSL HTESWAID
Sbjct: 44  SIFQAYNPSLDFPVPDRPARLANVRLVSPSLMPKLGKAGSLQSRQAIVHSLVHTESWAID 103

Query: 49  LSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL---------------- 92
           LSWDIIARFGKQ+ MPREFF DFVKVAQD+GRHF LLA +LEEL                
Sbjct: 104 LSWDIIARFGKQEGMPREFFTDFVKVAQDEGRHFNLLAKRLEELGSSYGALPAHDGLWDS 163

Query: 93  --------------------ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAA 132
                               ARGL+VLPT ISRFRNGGDNETA+LLE VVY EEITHCAA
Sbjct: 164 AIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETADLLETVVYPEEITHCAA 223

Query: 133 RVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRG 188
            V+WF+YLCLRS  P L +D+L+  E+   E   +TE NEE IQ F A+VRTHFRG
Sbjct: 224 GVKWFKYLCLRSKTPALSRDNLSSEENGDKETEISTEGNEEVIQKFHAIVRTHFRG 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449655|ref|XP_002262808.1| PREDICTED: uncharacterized protein HI_0077 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15238192|ref|NP_196072.1| uncharacterized protein [Arabidopsis thaliana] gi|7406456|emb|CAB85558.1| 3-oxoacyl-[acyl-carrier-protein] synthase-like protein [Arabidopsis thaliana] gi|332003373|gb|AED90756.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296090377|emb|CBI40196.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357463869|ref|XP_003602216.1| hypothetical protein MTR_3g091130 [Medicago truncatula] gi|355491264|gb|AES72467.1| hypothetical protein MTR_3g091130 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449441820|ref|XP_004138680.1| PREDICTED: uncharacterized protein HI_0077-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493255|ref|XP_004159236.1| PREDICTED: uncharacterized protein HI_0077-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297810539|ref|XP_002873153.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297318990|gb|EFH49412.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356516033|ref|XP_003526701.1| PREDICTED: uncharacterized protein HI_0077-like [Glycine max] Back     alignment and taxonomy information
>gi|255635209|gb|ACU17959.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
TAIR|locus:2184372291 AT5G04520 "AT5G04520" [Arabido 0.661 0.429 0.531 8.8e-31
ZFIN|ZDB-GENE-030616-19426 si:ch73-314g15.3 "si:ch73-314g 0.502 0.223 0.405 9.4e-16
TAIR|locus:2038550383 AT1G06240 "AT1G06240" [Arabido 0.455 0.224 0.370 1.1e-15
UNIPROTKB|Q5LRA0278 SPO2229 "Uncharacterized prote 0.582 0.395 0.373 6.8e-14
TIGR_CMR|SPO_2229278 SPO_2229 "conserved hypothetic 0.582 0.395 0.373 6.8e-14
ASPGD|ASPL0000064279446 AN7364 [Emericella nidulans (t 0.417 0.177 0.422 9.7e-12
UNIPROTKB|Q604Q4278 MCA2484 "Putative uncharacteri 0.402 0.273 0.367 4.6e-10
UNIPROTKB|Q5HTZ1265 CJE1256 "Putative uncharacteri 0.386 0.275 0.368 1.5e-05
TIGR_CMR|CJE_1256265 CJE_1256 "conserved hypothetic 0.386 0.275 0.368 1.5e-05
TAIR|locus:2184372 AT5G04520 "AT5G04520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 77/145 (53%), Positives = 91/145 (62%)

Query:     6 ITQPYNPALDLPVSCRPARL---------------GNGLQNRQAIVHSLAHTESWAIDLS 50
             I +PY+P +D PV  RPARL                  LQ+RQAIVHSLAHTESWAIDLS
Sbjct:    38 IAEPYDPTVDFPVPDRPARLPVKLVSPSLMPKLGRAGSLQSRQAIVHSLAHTESWAIDLS 97

Query:    51 WDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGG 110
             WDIIARFGKQ+ MPR+FF DFV+VAQD+GRHFTLLAA+LEE+      LP A     +  
Sbjct:    98 WDIIARFGKQEKMPRDFFTDFVRVAQDEGRHFTLLAARLEEIGSSYGALP-AHDGLWDSA 156

Query:   111 DNETAELLERVVYREEITHCAARVR 135
                + +LL R+     I HC    R
Sbjct:   157 TATSHDLLARLA----IEHCVHEAR 177
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-030616-19 si:ch73-314g15.3 "si:ch73-314g15.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2038550 AT1G06240 "AT1G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LRA0 SPO2229 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2229 SPO_2229 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
ASPGD|ASPL0000064279 AN7364 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q604Q4 MCA2484 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q5HTZ1 CJE1256 "Putative uncharacterized protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1256 CJE_1256 "conserved hypothetical protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_X0933
hypothetical protein (314 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
pfam04305250 pfam04305, DUF455, Protein of unknown function (DU 8e-38
COG2833268 COG2833, COG2833, Uncharacterized protein conserve 2e-23
>gnl|CDD|218017 pfam04305, DUF455, Protein of unknown function (DUF455) Back     alignment and domain information 
 Score =  130 bits (329), Expect = 8e-38
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 41/161 (25%)

Query: 21  RPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGR 80
           R  +LG+  + R A++H+LAH E  AIDL+ D +ARF   + +PREF+ D++KVA D+ +
Sbjct: 55  RRGKLGS-EEGRAALLHALAHIELNAIDLALDAVARF---RGLPREFYDDWLKVADDEAK 110

Query: 81  HFTLLAAQLEEL------------------------------------ARGLNVLPTAIS 104
           HF LL  +LEEL                                    ARGL+  P  I+
Sbjct: 111 HFRLLRERLEELGSEYGDFPAHDGLWEAAEKTADDLLARMALVPRVLEARGLDATPGIIA 170

Query: 105 RFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSG 145
           +    GDNE+A +L+ V+ R+EI H A   RWFR+LC R G
Sbjct: 171 KLEGAGDNESAAILD-VILRDEIGHVAIGNRWFRFLCERRG 210

Length = 250
>gnl|CDD|225389 COG2833, COG2833, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 100.0
COG2833268 Uncharacterized protein conserved in bacteria [Fun 100.0
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.51
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 97.1
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 97.05
cd07908154 Mn_catalase_like Manganese catalase-like protein, 96.61
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 96.3
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 96.09
PRK10635158 bacterioferritin; Provisional 95.91
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 95.85
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 95.39
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 95.23
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 95.16
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 95.06
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 95.05
TIGR02158237 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subu 94.7
TIGR02156289 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subu 94.7
PRK13778314 paaA phenylacetate-CoA oxygenase subunit PaaA; Pro 94.66
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 94.34
PRK13456186 DNA protection protein DPS; Provisional 94.15
PRK10304165 ferritin; Provisional 93.04
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 92.38
COG2406172 Protein distantly related to bacterial ferritins [ 92.24
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 90.62
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 89.48
COG3396265 Uncharacterized conserved protein [Function unknow 88.29
PF03232172 COQ7: Ubiquinone biosynthesis protein COQ7; InterP 87.98
PF13668137 Ferritin_2: Ferritin-like domain 87.75
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 87.08
COG2193157 Bfr Bacterioferritin (cytochrome b1) [Inorganic io 86.5
COG1633176 Uncharacterized conserved protein [Function unknow 85.55
cd07910180 MiaE MiaE tRNA-modifying nonheme diiron monooxygen 84.63
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 83.73
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 82.25
cd01056161 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr 80.84
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information 
Probab=100.00  E-value=1.4e-57  Score=394.60  Aligned_cols=133  Identities=50%  Similarity=0.879  Sum_probs=128.9

Q ss_pred             ChhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Q 041347           28 GLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL---------------   92 (189)
Q Consensus        28 s~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el---------------   92 (189)
                      |.++|++|||+||||||||||||||++|||.  ++||.+||.||++||.||+|||.||.+||++|               
T Consensus        63 ~~~~r~~llHaiAhIE~~AIdLa~Da~~RF~--~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~  140 (253)
T PF04305_consen   63 TPEGRAALLHAIAHIELNAIDLALDAIYRFH--PNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWE  140 (253)
T ss_pred             ChhhHHHHHHHhcchHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHH
Confidence            8899999999999999999999999999992  38999999999999999999999999999999               


Q ss_pred             ---------------------HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCCCCcc
Q 041347           93 ---------------------ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQ  151 (189)
Q Consensus        93 ---------------------ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~p~~~  151 (189)
                                           |||||+||.+++||+++||.+|++||+ |||+|||+||++|+|||+|+|+++|.||   
T Consensus       141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~~~~~~p---  216 (253)
T PF04305_consen  141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCEQRGLDP---  216 (253)
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhccccH---
Confidence                                 999999999999999999999999999 8999999999999999999999999988   


Q ss_pred             CccccccccccCCCCCcchhhHHHHHHHHHHHhhccCC
Q 041347          152 DSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRGH  189 (189)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lv~~~f~g~  189 (189)
                                             .++|+++|+.||.|.
T Consensus       217 -----------------------~~~f~~lv~~~~~~~  231 (253)
T PF04305_consen  217 -----------------------WETFRELVRQYFRGK  231 (253)
T ss_pred             -----------------------HHHHHHHHHHhCCCC
Confidence                                   999999999999873

>COG2833 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit Back     alignment and domain information
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit Back     alignment and domain information
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>PRK10304 ferritin; Provisional Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only] Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>COG3396 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ] Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01056 Euk_Ferritin eukaryotic ferritins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 96.35
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 96.35
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 96.33
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 96.26
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 96.19
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 96.16
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 95.86
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 95.82
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 95.79
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 95.79
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 95.77
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 95.77
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 95.66
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 95.54
3qz3_A184 Ferritin; structural genomics, the center for stru 95.44
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 95.24
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 95.21
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 94.94
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 94.91
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 94.9
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 94.72
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 94.6
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 94.59
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 94.55
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 94.51
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 94.35
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 93.85
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 93.78
1otk_A249 Protein PAAC, phenylacetic acid degradation protei 93.44
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 93.08
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 92.37
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 92.13
2fzf_A175 Hypothetical protein; structural genomics, southea 91.91
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 91.65
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 91.52
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 89.73
2vxx_A192 Starvation induced DNA binding protein; stress res 89.11
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 88.85
2v8t_A 302 Manganese-containing pseudocatalase; manganese cat 87.35
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 86.87
2itb_A206 TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative 82.56
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 82.19
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 81.8
3k6c_A95 Uncharacterized protein NE0167; structural genomic 81.57
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
Probab=96.35  E-value=0.045  Score=40.90  Aligned_cols=105  Identities=16%  Similarity=0.079  Sum_probs=72.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHH------------ccCCC--
Q 041347           33 QAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELA------------RGLNV--   98 (189)
Q Consensus        33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elA------------RGLDv--   98 (189)
                      +..|-..-..|+.|+....-..+.|.. .++| .+..=|-+.+.+|..|...+.+|+..++            .|-|+  
T Consensus         8 ~~~Ln~~l~~E~~a~~~Y~~~a~~~~~-~~~~-~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e   85 (158)
T 2y3q_A            8 INYLNKLLGNELVAINQYFLHARMFKN-WGLK-RLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEE   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCCCCCHHH
Confidence            445556667999999988777777741 2344 5666667899999999999999999881            01011  


Q ss_pred             ---------------cHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 041347           99 ---------------LPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYL  140 (189)
Q Consensus        99 ---------------~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~l  140 (189)
                                     -..+++.....||..+.++|+. |..||..|+..=..++..+
T Consensus        86 ~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~~-~~~ee~~h~~~l~~~l~~l  141 (158)
T 2y3q_A           86 MLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIE-ILRDEEGHIDWLETELDLI  141 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence                           0122223334599999999995 8999999986555555444
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Back     alignment and structure
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1 Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Back     alignment and structure
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Back     alignment and structure
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7 Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 97.93
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 97.15
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 96.98
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 96.93
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 96.83
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 96.67
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 96.64
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 96.47
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 96.35
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 95.67
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 95.5
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 95.26
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 94.96
d1lb3a_179 (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090] 94.16
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 93.95
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 93.92
d1r03a_171 (Apo)ferritin {Human (Homo sapiens), mitocondial i 92.96
d1otka_244 Phenylacetic acid degradation protein PaaC {Escher 92.87
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 92.75
d1rcda_171 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 92.59
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 91.5
d1bg7a_173 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 91.01
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 90.41
d2itba1199 Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Ps 90.01
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 88.77
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 88.69
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 85.61
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=97.93  E-value=4.6e-05  Score=57.65  Aligned_cols=110  Identities=24%  Similarity=0.282  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCC-hhHHHhHHHHHHHHHHHHHHHHHHHHHH------------------
Q 041347           32 RQAIVHSLAHTESWAIDLSWDIIARFGKQKAMP-REFFMDFVKVAQDKGRHFTLLAAQLEEL------------------   92 (189)
Q Consensus        32 RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP-~~Fy~Dwl~VA~DEarHF~LL~~rL~el------------------   92 (189)
                      -+-+|-.....|+.|+...+-..+-|.   +.- ..+-.=|.+.|.+|..|..++.+|+..+                  
T Consensus         9 ii~~Ln~~l~~E~~a~~~Y~~~a~~~~---~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~~~~~~   85 (169)
T d1nf4a_           9 VIEVLNKARAMELHAIHQYMNQHYSLD---DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAV   85 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccccccccCCCCH
Confidence            345667777899999998765444442   222 2344445567999999999999999999                  


Q ss_pred             -----------HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhH-----------HhhhHHHHHHHHHcCCCC
Q 041347           93 -----------ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHC-----------AARVRWFRYLCLRSGYPT  148 (189)
Q Consensus        93 -----------ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HV-----------a~G~rWF~~lC~~~g~~p  148 (189)
                                 -...+.-+.+++.....||..++++|+. |+.||..|+           .+|.   +|+++..|.++
T Consensus        86 ~e~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~-il~eE~~H~~~~e~~l~~i~~~G~---~yl~~~~~~~~  159 (169)
T d1nf4a_          86 PVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFER-IIEEEQAHLTYYENIGSHIKNLGD---TYLAKIAGTPS  159 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTH---HHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHhCCCC
Confidence                       1112222334455567899999999995 899999999           4465   47888888765
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Back     information, alignment and structure
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure