Citrus Sinensis ID: 041374
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.923 | 0.469 | 0.356 | 1e-83 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.925 | 0.460 | 0.358 | 1e-79 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.894 | 0.447 | 0.368 | 4e-77 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.959 | 0.433 | 0.308 | 6e-54 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.869 | 0.392 | 0.34 | 1e-53 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.912 | 0.422 | 0.326 | 2e-53 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.910 | 0.424 | 0.328 | 1e-52 | |
| Q9ZUI0 | 980 | Putative leucine-rich rep | no | no | 0.847 | 0.443 | 0.311 | 2e-52 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.873 | 0.381 | 0.315 | 1e-51 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.816 | 0.367 | 0.321 | 2e-50 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 209/587 (35%), Positives = 307/587 (52%), Gaps = 113/587 (19%)
Query: 20 FLLDSHSCFGLHSNETDRLAYLAIKSQL-QDPLGVTKSWNNSISLCQWTGVTCGHRHRRV 78
LL++H ++ETDR A L KSQ+ +D V SWN+S LC W GVTCG +++RV
Sbjct: 13 MLLETHG----FTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRV 68
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFL------------------------------------ 102
T L L +GG +SP +GNLSFL
Sbjct: 69 THLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRG 128
Query: 103 ----------RFVNLA--SNNLHGEIPYE-----------------HGQLPPSIGNLSAL 133
R +NL SN L G +P E G+LP S+GNL+ L
Sbjct: 129 PIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLL 188
Query: 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG 193
+ + ++ N L +P + QL + L + N FSG+F +++N+SSL+L+ N G
Sbjct: 189 EQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSG 248
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
L ++G LPNL ++ N +TGS+P +LSN S L+ L ++ N+ +G + F +PN
Sbjct: 249 RLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPN 307
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L L N+LG+ + DL+F+ LTNC++LE G+ N GG LP+SIANLS+ ++
Sbjct: 308 LKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLD 367
Query: 314 MGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------------- 358
+G I G+IP ++ NL+NL L+ N L+GP+P ++G+L NL+
Sbjct: 368 LGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPA 427
Query: 359 -----------------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILL 401
G VP+SLGNC +L+ L + +NKL G +P +I+ I L + L
Sbjct: 428 FIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRL 486
Query: 402 DLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP 461
D+SGN L GS+P ++G L+NL L L +N S ++P +L C T+E L++EGN G IP
Sbjct: 487 DMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP 546
Query: 462 LALNTLKSIKELDLSRNNLSGHIPEFLE--------NLSFNKMNETI 500
L L +KE+DLS N+LSG IPE+ NLSFN + +
Sbjct: 547 -DLKGLVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKV 592
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 207/577 (35%), Positives = 296/577 (51%), Gaps = 102/577 (17%)
Query: 32 SNETDRLAYLAIKSQLQD--PLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIG 89
SNETD A L KSQ+ + V SWN+S C W GVTCG R RV L L +
Sbjct: 27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86
Query: 90 GFLSPYVGNLSFLRFVNLASNNLHGEIPYE-----------------HGQLPPSIGNLSA 132
G +SP +GNLSFLR +NLA N+ IP + G++P S+ N S
Sbjct: 87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146
Query: 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISE---------------------------- 164
L +D++ N L VP LG L L+ LD+S+
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206
Query: 165 --------------------NAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLP 204
N+FSG F +++NISSLE + +N G+L + G+ LP
Sbjct: 207 GEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLP 266
Query: 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNL 264
NL L + N +TG++P +L+N S+L+ D+S N+ SG + + F +L NL+ L N+L
Sbjct: 267 NLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL 326
Query: 265 GTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP 324
G + L+FI + NC++LE + N GG LP SIANLS+T+ +G N I GTIP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386
Query: 325 PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQL------------------------- 359
++ NLV+L LE N L+G +P + G+L NLQ+
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446
Query: 360 -------RGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSI 412
G +P SLG C+ L+ L + N+L G +P +IL I +L+ +DLS N LTG
Sbjct: 447 HLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHF 505
Query: 413 PTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKE 472
P EVG L+ LV L S N S ++P ++ C ++E+L+M+GNS G+IP ++ L S+K
Sbjct: 506 PEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DISRLVSLKN 564
Query: 473 LDLSRNNLSGHIPEFLENL-SFNKMNETINDFCHHKP 508
+D S NNLSG IP +L +L S +N ++N F P
Sbjct: 565 VDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVP 601
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 206/559 (36%), Positives = 297/559 (53%), Gaps = 100/559 (17%)
Query: 32 SNETDRLAYLAIKSQLQDPLGVT-KSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGG 90
+ ETD+ A L KSQ+ + V SWN+S+ LC WTGV CG +HRRVT + L + G
Sbjct: 36 TEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTG 95
Query: 91 FLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQL--------------------------- 123
+SP+VGNLSFLR +NLA N HG IP E G L
Sbjct: 96 VVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSL 155
Query: 124 --------------PPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLD-------- 161
P G+LS L + + N L + P SLG L SL LD
Sbjct: 156 STLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEG 215
Query: 162 ----------------ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205
I+ N F+G+F I+N+SSL + N G+L + G LPN
Sbjct: 216 EIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPN 275
Query: 206 LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLG 265
L+ L + N++TG++P +LSN S+L+ LD+ NH +G++ + F RL NL L N+LG
Sbjct: 276 LQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLG 335
Query: 266 TGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPP 325
+ GDLDF+ LTNCS+L+ + N GG LP+ IANLS+ + ++G N I G+IP
Sbjct: 336 NYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPH 395
Query: 326 EVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------------------------- 358
+ NLV+L L N LTG +P ++GEL L+
Sbjct: 396 GIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLY 455
Query: 359 -----LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP 413
G++PSSLG+C L+ L++ NKL G++P +++ + +L ++L++S NLL G +
Sbjct: 456 LLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLR 514
Query: 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKEL 473
++G LK L+ LD+S N S +IP +L+ C +LE+L ++GNS G IP + L ++ L
Sbjct: 515 QDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIP-DIRGLTGLRFL 573
Query: 474 DLSRNNLSGHIPEFLENLS 492
DLS+NNLSG IPE++ N S
Sbjct: 574 DLSKNNLSGTIPEYMANFS 592
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 179/580 (30%), Positives = 278/580 (47%), Gaps = 88/580 (15%)
Query: 5 ISITYLATSVWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQLQDPLGVTKSWNNSIS-L 63
+++++ + ++ F+ F + S S +NE L + S P V WN S S
Sbjct: 13 LTVSHFSITLSLFLAFFISSTSA---STNEVSALISW-LHSSNSPPPSVFSGWNPSDSDP 68
Query: 64 CQWTGVTCGHRHRRVT-------------------------KLVLRNQSIGGFLSPYVGN 98
CQW +TC ++ KLV+ N ++ G +S +G+
Sbjct: 69 CQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEIGD 128
Query: 99 LSFLRFVNLASNNLHGEIPYEHGQL-----------------PPSIGNLSALQNIDIAGN 141
S L ++L+SN+L GEIP G+L PP +G+ +L+N++I N
Sbjct: 129 CSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDN 188
Query: 142 RLHSRVPESLGQLRSLSFLDISENA-FSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG 200
L +P LG++ +L + N+ SG I N +L+++ ++ GSLPV++G
Sbjct: 189 YLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLG 248
Query: 201 FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260
L L+ LSV +G +P L N S L L L N SG + + +L NL ++
Sbjct: 249 -QLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLW 307
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY 320
+NNL ++ F+ L A L N F G +P S NLS+ L + N I
Sbjct: 308 QNNLHGPIPEEIGFMKSLN------AIDLSMNYFSGTIPKSFGNLSNLQELM-LSSNNIT 360
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL--------QLRGNVPSSLGNCQN 372
G+IP + N L F ++ NQ++G IP IG L+ L +L GN+P L CQN
Sbjct: 361 GSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQN 420
Query: 373 LMLLSVSNNKLTGALPP----------------QILGILTLSI-------LLDLSGNLLT 409
L L +S N LTG+LP I G++ L I L L N +T
Sbjct: 421 LQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRIT 480
Query: 410 GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKS 469
G IP +G L+NL LDLSEN+ S +P+ +S C L+ L + N++ G +PL+L++L
Sbjct: 481 GEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTK 540
Query: 470 IKELDLSRNNLSGHIPEFLENL-SFNKMNETINDFCHHKP 508
++ LD+S N+L+G IP+ L +L S N++ + N F P
Sbjct: 541 LQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIP 580
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 247/500 (49%), Gaps = 54/500 (10%)
Query: 39 AYLAIKSQLQDPLGVTKSWNNSI--SLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYV 96
A A K L DPLG SW+ S + C W GV C + RVT++ L + G +S +
Sbjct: 31 ALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGC--TNHRVTEIRLPRLQLSGRISDRI 88
Query: 97 GNLSFLRFVNLASNNLHGEIPYE-----------------HGQLPPSIGNLSALQNIDIA 139
L LR ++L SN+ +G IP G+LPP++ NL++L+ ++A
Sbjct: 89 SGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVA 148
Query: 140 GNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNI 199
GNRL +P +G SL FLDIS N FSG S + N++ L+L+ N+L G +P ++
Sbjct: 149 GNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASL 206
Query: 200 GFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259
G +L +L+ L + N G+LP ++SN S+L L S N G + + LP L L+
Sbjct: 207 G-NLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSL 265
Query: 260 GKNN-------------------LGTGAIGDLDFIAHLTNC-SKLEAFGLDTNIFGGVLP 299
NN LG A D+ NC + L+ L N G P
Sbjct: 266 SNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFP 325
Query: 300 LSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ- 358
L + N+ S L G N G IPP++ NL L L N LTG IP I + +L
Sbjct: 326 LWLTNILSLKNLDVSG-NLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDV 384
Query: 359 -------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGS 411
L+G +P LG + L +LS+ N +G +P ++ + L L+L N L GS
Sbjct: 385 LDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLE-RLNLGENNLNGS 443
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
P E+ L +L +LDLS N FS +PVS+S + L +L + GN +G IP ++ L +
Sbjct: 444 FPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLT 503
Query: 472 ELDLSRNNLSGHIPEFLENL 491
LDLS+ N+SG +P L L
Sbjct: 504 ALDLSKQNMSGEVPVELSGL 523
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 167/511 (32%), Positives = 250/511 (48%), Gaps = 43/511 (8%)
Query: 10 LATSVWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQLQD-PLGVTKSWNNSISL-CQWT 67
+ +V F+LFL + S + + +D A L++ P +T+SWN S S C W
Sbjct: 1 MKVAVNTFLLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWL 60
Query: 68 GVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSI 127
GV C R + V L L + I G P + +L L+ V L+ N G IP + +
Sbjct: 61 GVEC-DRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQ-------L 112
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPL 187
GN S L++ID++ N +P++LG L++L L + N+ G F S+ +I LE +Y
Sbjct: 113 GNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFT 172
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID 247
N L GS+P NIG ++ L L + N ++G +P SL N + LQ L L+ N+ G + +
Sbjct: 173 GNGLNGSIPSNIG-NMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVT 231
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIA--------------------HLTNCSKLEAF 287
N L NL L+ N+L GAI LDF++ L NC+ L F
Sbjct: 232 LNNLENLVYLDVRNNSL-VGAI-PLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREF 289
Query: 288 GLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPI 347
G + G +P L+ L+ G N G IPPE+ ++ L+ NQL G I
Sbjct: 290 GAFSCALSGPIPSCFGQLTKLDTLYLAG-NHFSGRIPPELGKCKSMIDLQLQQNQLEGEI 348
Query: 348 PHAIGELRNLQ--------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSI 399
P +G L LQ L G VP S+ Q+L L + N L+G LP + + L +
Sbjct: 349 PGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQL-V 407
Query: 400 LLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS 459
L L N TG IP ++G +L LDL+ N F+ IP +L + L+ L + N + GS
Sbjct: 408 SLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGS 467
Query: 460 IPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490
+P L +++ L L NNL G +P+F+E
Sbjct: 468 VPSDLGGCSTLERLILEENNLRGGLPDFVEK 498
|
Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 182/554 (32%), Positives = 254/554 (45%), Gaps = 87/554 (15%)
Query: 7 ITYLATSVWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQLQDPLGVTKSWNNSIS-LCQ 65
I +LA + C F+L NE R+ L K+ L D G SWN S C
Sbjct: 5 ICFLAIVILCSFSFILVRSL------NEEGRV-LLEFKAFLNDSNGYLASWNQLDSNPCN 57
Query: 66 WTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVN------------------- 106
WTG+ C H R VT + L ++ G LSP + L LR +N
Sbjct: 58 WTGIACTHL-RTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRS 116
Query: 107 -----LASNNLHGEIP-----------------YEHGQLPPSIGNLSALQNIDIAGNRLH 144
L +N HG IP Y G +P IGNLS+LQ + I N L
Sbjct: 117 LEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLT 176
Query: 145 SRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLP 204
+P S+ +LR L + N FSG+ S I SL+++ EN LEGSLP + L
Sbjct: 177 GVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLE-KLQ 235
Query: 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNL 264
NL DL + QN +G +P S+ N S L++L L N+F+G + + +L + RL N L
Sbjct: 236 NLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQL 295
Query: 265 GTGAI----------GDLDF------------IAHLTNCSKLEAFGLDTNIFGGVLPLSI 302
TG I ++DF H+ N L F NI G +P +
Sbjct: 296 -TGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLF---ENILLGPIPREL 351
Query: 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---- 358
L+ + + +N++ GTIP E++ L L L NQL G IP IG N
Sbjct: 352 GELT-LLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDM 410
Query: 359 ----LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPT 414
L G +P+ Q L+LLS+ +NKL+G +P + +L+ L+ L N LTGS+P
Sbjct: 411 SANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLM-LGDNQLTGSLPI 469
Query: 415 EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELD 474
E+ NL+NL L+L +N S I L LE L + N+ TG IP + L I +
Sbjct: 470 ELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFN 529
Query: 475 LSRNNLSGHIPEFL 488
+S N L+GHIP+ L
Sbjct: 530 ISSNQLTGHIPKEL 543
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 160/514 (31%), Positives = 253/514 (49%), Gaps = 79/514 (15%)
Query: 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEH 120
+ +C W+GV C +V +L + + +GG +SP + NL+ L ++L+ N +
Sbjct: 51 VDVCNWSGVKCNKESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRN-------FFV 103
Query: 121 GQLPPSIGNL-SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF--- 176
G++PP IG+L L+ + ++ N LH +P+ LG L L +LD+ N +G +F
Sbjct: 104 GKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNG 163
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236
+ SSL+ I N L G +P+N L L L + N TG++P SLSN++NL+ +DL
Sbjct: 164 SSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLE 223
Query: 237 LNHFSGQVKID-FNRLPNLFRLNFGKNN-LGTGAIGDLD-FIAHLTNCSKLEAFGLDTNI 293
N SG++ +++P L L N+ + +L+ F A L N S L+ L N
Sbjct: 224 SNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNS 283
Query: 294 FGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVK------------------------N 329
GG + S+ +LS ++ + N+I+G+IPPE+
Sbjct: 284 LGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCK 343
Query: 330 LVNLNGFGLEYNQLTGPIPHAIGELRNL----------------------QLR------- 360
L L L N LTG IP +G++ L QLR
Sbjct: 344 LSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGN 403
Query: 361 ---GNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILT-LSILLDLSGNLLTGSIPTEV 416
G VP SLG C NL +L +S+N LTG +P +++ L L + L+LS N L+G IP E+
Sbjct: 404 HLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLEL 463
Query: 417 GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLS 476
+ ++ +DLS N S +IP L +C LE+L + N + ++P +L L +KELD+S
Sbjct: 464 SKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVS 523
Query: 477 RNNLSGHIPEFLE--------NLSFNKMNETIND 502
N L+G IP + N SFN ++ ++D
Sbjct: 524 FNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSD 557
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 174/552 (31%), Positives = 243/552 (44%), Gaps = 104/552 (18%)
Query: 49 DPLGVTKSWN--NSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVN 106
DPLGV W S+ C WTG+TC V+ +L Q + G LSP + NL++L+ ++
Sbjct: 44 DPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQ-LEGVLSPAIANLTYLQVLD 102
Query: 107 LASNNLHGEIPYEHGQL-----------------PPSIGNLSALQNIDIAGNRLHSRVPE 149
L SN+ G+IP E G+L P I L + +D+ N L VPE
Sbjct: 103 LTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPE 162
Query: 150 SLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209
+ + SL + N +G + ++ L++ N L GS+PV+IG +L NL DL
Sbjct: 163 EICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIG-TLANLTDL 221
Query: 210 SVRQNNYTGSLPHSLSNASNLQ------------------------LLDLSLNHFSGQVK 245
+ N TG +P N NLQ L+L N +G++
Sbjct: 222 DLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIP 281
Query: 246 IDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTN------------------CSKLEAF 287
+ L L L KN L + L + LT+ LE
Sbjct: 282 AELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVL 341
Query: 288 GLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPI 347
L +N F G P SI NL + +L T+G N I G +P ++ L NL N LTGPI
Sbjct: 342 TLHSNNFTGEFPQSITNLRNLTVL-TVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPI 400
Query: 348 PHAIGELRNLQL-------------------------------RGNVPSSLGNCQNLMLL 376
P +I L+L G +P + NC NL L
Sbjct: 401 PSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETL 460
Query: 377 SVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEI 436
SV++N LTG L P ++G L +L +S N LTG IP E+GNLK+L L L N F+ I
Sbjct: 461 SVADNNLTGTLKP-LIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRI 519
Query: 437 PVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEF---LENLSF 493
P +S T L+ L M N + G IP + +K + LDLS N SG IP LE+L++
Sbjct: 520 PREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTY 579
Query: 494 -----NKMNETI 500
NK N +I
Sbjct: 580 LSLQGNKFNGSI 591
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 224/485 (46%), Gaps = 66/485 (13%)
Query: 74 RHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYE-------------- 119
+ R + L+L + + G + P + S L+ + L N L G IP E
Sbjct: 151 KLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGG 210
Query: 120 ----HGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175
GQ+P IG+ S L + +A + +P SLG+L+ L L I SG S +
Sbjct: 211 NKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDL 270
Query: 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235
N S L ++ EN L GS+P IG L LE L + QN+ G +P + N SNL+++DL
Sbjct: 271 GNCSELVDLFLYENSLSGSIPREIG-QLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDL 329
Query: 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG 295
SLN SG + RL L N +G+I ++NCS L LD N
Sbjct: 330 SLNLLSGSIPSSIGRLSFLEEFMISDNKF-SGSIP-----TTISNCSSLVQLQLDKNQIS 383
Query: 296 GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELR 355
G++P + L+ + F NQ+ G+IPP + + +L L N LTG IP + LR
Sbjct: 384 GLIPSELGTLTKLTLFFAWS-NQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLR 442
Query: 356 NL--------QLRGNVPSSLGNCQNLMLLSVSNNKLTGALP------------------- 388
NL L G +P +GNC +L+ L + N++TG +P
Sbjct: 443 NLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRL 502
Query: 389 ----PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACT 444
P +G + ++DLS N L GS+P V +L L LD+S N FS +IP SL
Sbjct: 503 HGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLV 562
Query: 445 TLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP---------EFLENLSFNK 495
+L L + N +GSIP +L ++ LDL N LSG IP E NLS N+
Sbjct: 563 SLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNR 622
Query: 496 MNETI 500
+ I
Sbjct: 623 LTGKI 627
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.931 | 0.459 | 0.416 | 1e-108 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.933 | 0.251 | 0.414 | 1e-107 | |
| 224115346 | 1017 | predicted protein [Populus trichocarpa] | 0.988 | 0.498 | 0.389 | 1e-101 | |
| 255577438 | 1028 | receptor-kinase, putative [Ricinus commu | 0.962 | 0.480 | 0.381 | 1e-99 | |
| 356566660 | 1020 | PREDICTED: probable LRR receptor-like se | 0.961 | 0.483 | 0.391 | 5e-98 | |
| 224081190 | 1011 | predicted protein [Populus trichocarpa] | 0.980 | 0.497 | 0.385 | 7e-98 | |
| 357505893 | 1003 | Receptor kinase-like protein [Medicago t | 0.943 | 0.482 | 0.386 | 1e-96 | |
| 255585471 | 963 | serine-threonine protein kinase, plant-t | 0.908 | 0.483 | 0.396 | 1e-96 | |
| 449441592 | 1023 | PREDICTED: probable LRR receptor-like se | 0.933 | 0.468 | 0.398 | 6e-96 | |
| 449499190 | 1023 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.933 | 0.468 | 0.398 | 6e-96 |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 240/576 (41%), Positives = 331/576 (57%), Gaps = 98/576 (17%)
Query: 31 HSNETDRLAYLAIKSQL-QDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIG 89
H NETDRLA LAIK+Q+ QDPLG+T SWN+S+ C WTGVTCGHRH+RV L L + +
Sbjct: 35 HRNETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLV 94
Query: 90 GFLSPYVGNLSFL------------------------RFVNLASNNLHGEIPYE------ 119
G LSP +GNL+FL R +NL +N+ GEIP
Sbjct: 95 GSLSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSN 154
Query: 120 -----------------------------------HGQLPPSIGNLSALQNIDIAGNRLH 144
G +P S+GNL++++++ A N L
Sbjct: 155 LVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLE 214
Query: 145 SRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLP 204
+P++LGQL++L F+ + N FSG+ SS++N+SSLE+ N+L GSLP ++ F+LP
Sbjct: 215 GSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLP 274
Query: 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNL 264
NL+ L++ N++TGSLP SLSNASNL D+++++F+G+V IDF +PNL+ L N L
Sbjct: 275 NLQVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPL 334
Query: 265 GTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP 324
G G DL F+ L C L+ L + FGGVLP SIANLS+ ++ + NQ+ GTIP
Sbjct: 335 GKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIP 394
Query: 325 PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL--------QLRGNVPSSLGNCQNLMLL 376
P + NLVNL L N TG IP IG L+ L QL G++PSSLGN L L
Sbjct: 395 PGIGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSL 454
Query: 377 SVSNNKLT------------------------GALPPQILGILTLSILLDLSGNLLTGSI 412
+ NN L+ G +P +++ +++L+I L+L+ N LTG +
Sbjct: 455 HLQNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLL 514
Query: 413 PTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKE 472
P+EV LKNL LD+SEN S EIP L +C TLE+L+MEGN GSIP + +L+ + +
Sbjct: 515 PSEVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLD 574
Query: 473 LDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKP 508
LDLSRNNLSG IPEFL+ LS + +N + N+F P
Sbjct: 575 LDLSRNNLSGQIPEFLQQLSLSNLNLSFNNFEGQLP 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 239/577 (41%), Positives = 331/577 (57%), Gaps = 98/577 (16%)
Query: 30 LHSNETDRLAYLAIKSQL-QDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSI 88
L+ NETDRLA LAIK+Q+ QDPLG+T SWN+S+ C WTGVTCGHRH+RV L L + +
Sbjct: 65 LYGNETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHL 124
Query: 89 GGFLSPYVGNLSFL------------------------RFVNLASNNLHGEIPYE----- 119
G LSP +GNL+FL R +NL +N+ GEIP
Sbjct: 125 VGSLSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCS 184
Query: 120 ------------------------------------HGQLPPSIGNLSALQNIDIAGNRL 143
G +P S+GNL++++++ A N L
Sbjct: 185 NLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHL 244
Query: 144 HSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSL 203
+P++LGQL++L F+ + N FSG+ SS++N+SSLE+ N+L GSLP ++ F+L
Sbjct: 245 EGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTL 304
Query: 204 PNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNN 263
PNL+ L++ N++TG LP SLSNASNL D+++++F+G+V IDF +PNL+ L N
Sbjct: 305 PNLQVLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNP 364
Query: 264 LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTI 323
LG G DL F+ L C L+ L + FGGVLP SIANLS+ ++ + NQ+ GTI
Sbjct: 365 LGKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTI 424
Query: 324 PPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL--------QLRGNVPSSLGNCQNLML 375
PP + NLVNL L N TG IP IG L+ L QL G++PSSLGN L
Sbjct: 425 PPGIGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYS 484
Query: 376 LSVSNNKLT------------------------GALPPQILGILTLSILLDLSGNLLTGS 411
L + NN L+ G +P +++ +++L+I L+L+ N LTG
Sbjct: 485 LHLQNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGL 544
Query: 412 IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
+P+EV LKNL LD+SEN S EIP L +C TLE+L+MEGN GSIP + +L+ +
Sbjct: 545 LPSEVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLL 604
Query: 472 ELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKP 508
+LDLSRNNLSG IPEFL+ LS + +N + N+F P
Sbjct: 605 DLDLSRNNLSGQIPEFLQQLSLSNLNLSFNNFEGQLP 641
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 236/606 (38%), Positives = 341/606 (56%), Gaps = 99/606 (16%)
Query: 1 MLNFISITYLATSVWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQL-QDPLGVTKSWNN 59
+F ++ L+ ++ F F + S S SN TDRLA L KS++ DP + SWN+
Sbjct: 5 FFHFQALFLLSATLLNFTPFRISSVSATTF-SNFTDRLALLDFKSKIIHDPQNIFGSWND 63
Query: 60 SISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFL----------------- 102
S+ CQW GV CG RH RVT L L + + G +SP +GNLSFL
Sbjct: 64 SLHFCQWQGVRCGRRHERVTVLKLESSGLVGSISPALGNLSFLWGLDLSNNTLQGKIPDG 123
Query: 103 -------------------------------RFVNLASNNLHGEIPYE------------ 119
++ LASNNL G+IP E
Sbjct: 124 LGRLFRLQILVLNNNSFVGEIPGNLSHCSKLDYLGLASNNLVGKIPAELVSLSKLEKLVI 183
Query: 120 -----HGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174
G +PP IGNL++L +I A N R+P++LGQL++L L + N SG
Sbjct: 184 HKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPDTLGQLKNLESLGLGTNFLSGTIPLP 243
Query: 175 IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234
I+N+S+L ++ EN+L+G LP +IG SLPNL+ + +R N ++GS+P S+SN+SNLQ+L+
Sbjct: 244 IYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYIQIRANQFSGSIPLSISNSSNLQVLE 303
Query: 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIF 294
N FSG++ ++F L +L ++ N +G+G G+L F+ L NC+ L A + N F
Sbjct: 304 AGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEPGELSFLDSLINCTSLYAIDIVGNHF 363
Query: 295 GGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGEL 354
G+LP S+ NLS+ + +G NQ++G I + NL+NLN GLE+NQL+GPIP IG+L
Sbjct: 364 EGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGNLINLNTLGLEFNQLSGPIPLDIGKL 423
Query: 355 RNL--------------------------------QLRGNVPSSLGNCQNLMLLSVSNNK 382
R L QL+G +PSS+GNCQ L+LL +S N
Sbjct: 424 RMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGNQLQGTIPSSIGNCQKLLLLHLSRNN 483
Query: 383 LTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSA 442
L+G P ++ I +LS+ LDLS N GS+P+E+G+LK+L +L++S N FS EIP +L++
Sbjct: 484 LSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLKSLAKLNVSYNEFSGEIPSTLAS 543
Query: 443 CTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETIND 502
CT+LEYLYM+ N GSIP + +TL+ I++LDLS NNLSG IP+FL+ + +N + ND
Sbjct: 544 CTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSHNNLSGQIPKFLDTFALLTLNLSFND 603
Query: 503 FCHHKP 508
F P
Sbjct: 604 FEGEVP 609
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 227/595 (38%), Positives = 324/595 (54%), Gaps = 101/595 (16%)
Query: 14 VWCFVLFLLD-SHSCFGLHSNETDRLAYLAIKSQL-QDPLGVTKSWNNSISLCQWTGVTC 71
+W L ++ S S NETDRL+ LA K+ + DPL + SWN S+ C+W+G+TC
Sbjct: 12 LWVLFLKMIQLSCSSLSGRGNETDRLSLLAFKAHITDDPLHILSSWNESLHFCKWSGITC 71
Query: 72 GHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVN------------------------- 106
G RH+RV ++ L + + G L+ ++GNLSFLR +N
Sbjct: 72 GSRHQRVIEIDLESSRLSGSLTAFIGNLSFLRVLNLQNNSLSHYIPQEIGRLFRLRTLIL 131
Query: 107 -----------------------LASNNLHGEIPYE-----------------HGQLPPS 126
L NNL G++P E G++ PS
Sbjct: 132 RRNSFSGEIPVNISYCSNLLTLRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGEISPS 191
Query: 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
NLS+L+ I N H +P S+GQL+SL + + FSG+ SIFN+SSL ++
Sbjct: 192 FSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSV 251
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKI 246
N+L G+LP ++G SLP LE L + N ++GS+P ++SNASNL LD+S N+F+G+V
Sbjct: 252 PINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPPTISNASNLVALDVSQNNFTGKVP- 310
Query: 247 DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
RL NL + KNNLG G DL F+ L N + LE + N GGVLP ++N S
Sbjct: 311 SLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNTNLEILAITENNLGGVLPEMLSNFS 370
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL--------- 357
+ ++ G N+I G IP E+ NL+ L G E N+LTG IP ++G+L+NL
Sbjct: 371 TKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNELTGSIPSSLGKLKNLIKLYLNDNN 430
Query: 358 -----------------------QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGI 394
L G++PSSLGNCQ ++L+ +S N L+G +P +++ I
Sbjct: 431 ISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNCQQMLLMDLSRNNLSGTIPKELISI 490
Query: 395 LTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGN 454
+LSI LDLS N TGS+P EVG L NL LD+S+N S EIP SL +CT LE LY++GN
Sbjct: 491 PSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKNKLSGEIPKSLGSCTRLETLYLQGN 550
Query: 455 SVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFL-ENLSFNKMNETINDFCHHKP 508
+ G+IP++L++L+ I +L+LS NNL+G IP F E S K++ + NDF P
Sbjct: 551 AFQGTIPVSLSSLRGINDLNLSHNNLTGQIPNFFAEFKSLEKLDLSYNDFEGEVP 605
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566660|ref|XP_003551548.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 225/575 (39%), Positives = 320/575 (55%), Gaps = 82/575 (14%)
Query: 16 CFVLFLLDSHSCFG-------LHSNETDRLAYLAIKSQL-QDPLGVTKSWNNSISLCQWT 67
C +L LL +C L NETD L KS++ DP + WN+SI C W
Sbjct: 21 CGILLLLCMSTCQDSATAASTLQGNETDLHTLLDFKSRIVHDPFHIMSLWNDSIHHCNWL 80
Query: 68 GVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYE-------- 119
G+TC + + RV L+L + ++ G L P +GNL+FL +NL +++ HGE P+E
Sbjct: 81 GITCNNSNGRVMYLILSDMTLSGTLPPSIGNLTFLTRLNLRNSSFHGEFPHEVGLLQYLQ 140
Query: 120 ---------------------------------HGQLPPSIGNLSALQNIDIAGNRLHSR 146
G +P IGN S+L +++A N LH
Sbjct: 141 HINISYNSFGGSIPSNLSHCTELSILSAGHNNYTGTIPAWIGNSSSLSLLNLAVNNLHGN 200
Query: 147 VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206
+P +GQL L+ L ++ N SG +IFNISSL +N L G++P ++G++ PNL
Sbjct: 201 IPNEIGQLSRLTLLALNGNYLSGTIPGTIFNISSLFFFTVSQNHLHGNIPADVGYTFPNL 260
Query: 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266
E + N++TG++P SLSNAS L++LD + N +G + + RLP L RLNF N LGT
Sbjct: 261 ETFAGGVNSFTGTIPESLSNASRLEILDFAENGLTGTLPKNIGRLPLLKRLNFDDNRLGT 320
Query: 267 GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPE 326
G GDL+F+A L NC+ L+ GL N FGG LP +IANLS+ + T+G N I+G++P
Sbjct: 321 GKAGDLNFLASLVNCTALKVLGLSDNSFGGELPSTIANLSTQLTSLTLGGNGIHGSVPIG 380
Query: 327 VKNLVNLNGFGLEYNQLTGPIPHAIGELR---------------------------NLQL 359
++NLVNL GLE N L+G +PH IG LR LQ+
Sbjct: 381 IRNLVNLTFLGLEENNLSGFVPHTIGMLRLLNGLDLNGNNFSGVIPSSIGNLTRLTRLQM 440
Query: 360 -----RGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPT 414
G++P++LG CQ+L++L++S+N L G +P Q+L + +LSI LDLS N LTG +
Sbjct: 441 EENNFEGSIPANLGKCQSLLMLNLSHNMLNGTIPRQVLTLSSLSIYLDLSHNALTGPVLA 500
Query: 415 EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELD 474
EVG L NL QLDLSEN S IP SL +C LE+++++GN G+IP + L+ ++++D
Sbjct: 501 EVGKLVNLAQLDLSENKLSGMIPSSLGSCIGLEWIHLQGNFFEGNIPSTMRYLRGLQDID 560
Query: 475 LSRNNLSGHIPEFL-ENLSFNKMNETINDFCHHKP 508
LS NN SG IPEFL E +N + NDF P
Sbjct: 561 LSCNNFSGKIPEFLGEFKVLEHLNLSYNDFSGKLP 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 233/605 (38%), Positives = 336/605 (55%), Gaps = 102/605 (16%)
Query: 5 ISITYLATSVWCFVLFLLDSHS-CFGLHS-NETDRLAYLAIKSQLQDPLGVTKSWNNSIS 62
+ ++ +++ ++C +L L+ S F LH NETDRL+ LA K+Q+ DPL SWN S
Sbjct: 1 MELSGMSSCIFCPLLLLIIQLSFSFSLHEGNETDRLSLLAFKAQITDPLDALSSWNASTH 60
Query: 63 LCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNL--------------- 107
C+W+GV CGHRH+R+ +L L++ + G LSP++GNLSFLR +NL
Sbjct: 61 FCKWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELGR 120
Query: 108 ---------------------------------ASNNLHGEIPYEHGQL----------- 123
SNNL G+IP + G L
Sbjct: 121 LFRLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQGN 180
Query: 124 ------PPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177
P S GNLS++QN N L +PESLG L+ L + ++EN SG SSI N
Sbjct: 181 NLVGDIPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLKYFAVAENDLSGTIPSSICN 240
Query: 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSL 237
ISSL + +N+L GSLP ++G +LPNL L + N+ G +P +LSNAS + L+DLS
Sbjct: 241 ISSLAYVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNGPIPATLSNASKIFLVDLSY 300
Query: 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297
N+ +G++ D LP+L +L N+LG G DL F+ L N + LE+ G++ N FGGV
Sbjct: 301 NNLTGKIP-DLASLPDLQKLLVHHNDLGNGEEDDLSFLYTLANSTNLESLGINDNNFGGV 359
Query: 298 LPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL 357
LP ++N S+ + T G NQI+G+IP E+ NL++L+ LE NQL G IP +IG+L+NL
Sbjct: 360 LPEIVSNFSTNLKGITFGRNQIHGSIPTEIGNLISLDTLSLETNQLHGIIPSSIGKLQNL 419
Query: 358 Q--------------------------------LRGNVPSSLGNCQNLMLLSVSNNKLTG 385
L+G +P+SLGN L++L +S N L+G
Sbjct: 420 AALYLNENKISGSIPSSLGNITSLVEVSFAQNNLQGTIPASLGNWHKLLILDLSQNNLSG 479
Query: 386 ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445
+P ++LGI +LS+LL L N LTGS+P+EVG L NL L +S+N S EIP SL +C +
Sbjct: 480 PIPKEVLGISSLSVLLYLHDNQLTGSLPSEVGQLVNLGFLRVSKNRLSGEIPKSLDSCKS 539
Query: 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS-FNKMNETINDFC 504
LE L + GN G +P L++L++++ L LS NNLSG IP+FL++ ++ + NDF
Sbjct: 540 LEGLDLGGNFFEGPVP-DLSSLRALQMLLLSYNNLSGQIPQFLKDFKLLETLDLSYNDFE 598
Query: 505 HHKPK 509
P+
Sbjct: 599 GEVPE 603
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505893|ref|XP_003623235.1| Receptor kinase-like protein [Medicago truncatula] gi|355498250|gb|AES79453.1| Receptor kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 220/569 (38%), Positives = 312/569 (54%), Gaps = 85/569 (14%)
Query: 14 VWCFVLFLLD---SHSCFGLHSNETDRLAYLAIKSQL-QDPLGVTKSWNNSISLCQWTGV 69
++ F+L++ S + L NETD A L KS++ QDP WN+SI C W G+
Sbjct: 18 LYSFLLYISKYQYSSTASTLQGNETDLHALLDFKSRITQDPFQALSLWNDSIHHCNWLGI 77
Query: 70 TCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQL------ 123
TC + RV L+L + ++ G LSP +GNL++L +NL +N+ HGE P + G L
Sbjct: 78 TCNISNGRVMHLILADMTLAGTLSPSIGNLTYLTKLNLRNNSFHGEFPQQVGNLLYLQHL 137
Query: 124 -----------------------------------PPSIGNLSALQNIDIAGNRLHSRVP 148
P IGN S+L +++A N LH +P
Sbjct: 138 NISYNSFSGSIPSNLSQCIELSILSSGHNNFTGTIPTWIGNFSSLSLLNLAVNNLHGTIP 197
Query: 149 ESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLED 208
+G+L L+ ++ N G S+FNISSL + +N L G+LP ++GF+LPNLE
Sbjct: 198 NEVGKLSRLTLFALNGNHLYGTIPLSVFNISSLSFLTFSQNNLHGNLPYDVGFTLPNLET 257
Query: 209 LSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA 268
+ N++TG++P SLSNAS L++LD + N+ G + + RL L RLNF N LG G
Sbjct: 258 FAGGVNDFTGTIPESLSNASRLEILDFAENNLIGTLPKNIGRLTLLKRLNFDTNRLGNGE 317
Query: 269 IGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVK 328
G+L+F+ L NC+ LE GL N FGG LP SI NLS + +G N IYG+IP +
Sbjct: 318 DGELNFLTSLINCTALEVLGLAENQFGGKLPSSIGNLSINLNALDLGENAIYGSIPIGIS 377
Query: 329 NLVNLNGFGLEYNQLTGPIPHAIGELRNL------------------------------- 357
NLVNL G+E N L+G +P IG L+ L
Sbjct: 378 NLVNLTSLGMEKNNLSGFVPDTIGMLQKLVDLELYSNKFSGVIPSSIGNLTRLTKLLIAD 437
Query: 358 -QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV 416
G++P+SL NCQ L++L++S+N L G++P Q+ + +LSI LDLS N LTGS+P E+
Sbjct: 438 NNFEGSIPTSLENCQRLLMLNLSHNMLNGSIPRQVFALSSLSIYLDLSHNSLTGSLPFEI 497
Query: 417 GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLS 476
G L NL LDLS+N S IP S+ +C +LE+L+M+GN G+IP + L+ I+ +DLS
Sbjct: 498 GKLVNLANLDLSKNKLSGMIPSSIGSCVSLEWLHMQGNFFEGNIPSTIQNLRGIQHIDLS 557
Query: 477 RNNLSGHIPEFLE--------NLSFNKMN 497
NNLSG IPEFL NLS+N ++
Sbjct: 558 CNNLSGKIPEFLGEIKGLMHLNLSYNNLD 586
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 226/570 (39%), Positives = 313/570 (54%), Gaps = 104/570 (18%)
Query: 14 VWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQL-QDPLGVTKSWNNSISLCQWTGVTCG 72
+ CF S + + NETD A L KS++ DP V +SWN +I CQW GVTCG
Sbjct: 23 ILCF-----SSTTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGVTCG 77
Query: 73 HRHRRVTKLVLRNQSIGGFLSPYVGNLSFLR----------------------------- 103
HRRVT L L + I G +SPY+GNLSFLR
Sbjct: 78 LLHRRVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEELRLN 137
Query: 104 -------------------FVNLASNNLHGEIPYE-----------------HGQLPPSI 127
F++L N L G +P E G +P S+
Sbjct: 138 NNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGSIPHSL 197
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPL 187
GNLS LQ + +A NR+ VP SLG LR+L+FL + N SG SS+FN+SS+ +
Sbjct: 198 GNLSQLQRLSLAENRMVGEVPNSLGWLRNLTFLSLRSNRLSGTIPSSLFNLSSIRNLDIG 257
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID 247
EN G+LP +IGF LPN+ ++ N +TG +P SLSNA+NL+ L L N+ +G+V
Sbjct: 258 ENNFHGNLPSDIGFLLPNIRWFAISSNEFTGKIPVSLSNATNLESLLLLQNNLTGEVP-S 316
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
+L L + NNLGTG DL F+ LTN + LE G++ N FGG+LP SIANLS+
Sbjct: 317 LAKLDRLRVFSLTSNNLGTGKADDLSFLHSLTNTTALEELGVNGNNFGGMLPDSIANLST 376
Query: 308 TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL---------- 357
T+ + + N+I G+IP ++NLV+L F + NQL+G IP +IG+L+NL
Sbjct: 377 TLRILLLDNNRIIGSIPSGIENLVSLEDFEVWNNQLSGFIPDSIGKLQNLVVLALNSNML 436
Query: 358 ----------------------QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395
L G +PS LG CQN++ LS+S N +G++PP+++ I
Sbjct: 437 SGHIPSSLGNLTNLIQLLVEDNNLSGRIPSDLGRCQNMLGLSLSQNNFSGSIPPEVISIS 496
Query: 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNS 455
+LSI LDLS N LTG++P EVGNLK+L + D+S N S EIP +L +C +LE L M GN+
Sbjct: 497 SLSIYLDLSQNNLTGTLPMEVGNLKSLSEFDVSGNKLSGEIPRTLGSCISLEILNMAGNN 556
Query: 456 VTGSIPLALNTLKSIKELDLSRNNLSGHIP 485
G IP +L++L++++ LDLS N+LSG +P
Sbjct: 557 FQGLIPSSLSSLRALQILDLSNNHLSGMVP 586
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441592|ref|XP_004138566.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 235/590 (39%), Positives = 321/590 (54%), Gaps = 111/590 (18%)
Query: 14 VWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQLQ-DPLGVTKSWNNSISLCQWTGVTCG 72
V CF+LF L S + +NETDRLA L+ KS++ DPLG+ SWN S+ C W GV C
Sbjct: 19 VICFLLFNLPLPSA-AIGANETDRLALLSFKSEITVDPLGLFISWNESVHFCNWAGVIC- 76
Query: 73 HRHRRVTKLVLRNQSIGGFLSPYVGNLSFL------------------------------ 102
+ RRVT+L L + G LSP +GNLSFL
Sbjct: 77 NPQRRVTELNLPSYQFNGKLSPSIGNLSFLTTLNLPNNSFGGEIPQEIGSLSRLQELDFR 136
Query: 103 ------------------RFVNLASNNLHGEIPYE-----------------HGQLPPSI 127
+++ L +NNL G +P E G++P +
Sbjct: 137 NNYFVGEIPITISNCSQLQYIGLLNNNLTGVLPMELGLLTKLEVFQCSSNELFGEIPETF 196
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPL 187
GNLS+L+ N H +P S GQLR+L+ L I N SG SSI+NISS+ +
Sbjct: 197 GNLSSLRGFWGTLNNFHGNIPSSFGQLRNLTALVIGANKLSGTIPSSIYNISSMRIFSLP 256
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQV-KI 246
N+LEG LP N+GF PNL+ L + N ++G +P +LSNAS L+ +S N FSG+V +
Sbjct: 257 VNQLEGGLPTNLGFIFPNLQILKIHTNQFSGPIPFTLSNASKLEEFVISNNMFSGKVPSL 316
Query: 247 DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
R +F ++ +NNLG G + DL+F+ L NC+ L + + N FGG LP I+N S
Sbjct: 317 ASTRHLEVFGID--RNNLGYGNVDDLNFLFPLVNCTNLSSVVISDNNFGGALPEYISNFS 374
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ-------- 358
+ + + G NQI+GTIP E+ NL L GLE NQLTG IP + G+L L
Sbjct: 375 TKLRIIGFGRNQIHGTIPTEIGNLFQLEALGLETNQLTGSIPSSFGKLYKLNDLFLNMNK 434
Query: 359 ------------------------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGI 394
L G +P SLG Q+L++L++S N+L+GA+P ++L I
Sbjct: 435 LSGTIPKSLGNLSALGRCNLRLNNLTGAIPPSLGESQSLLMLALSQNQLSGAIPKELLSI 494
Query: 395 LTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGN 454
+LSI LDLS N LTGSIP EVG L NL L +S+N + IP +LSACT+LE LY++GN
Sbjct: 495 SSLSIALDLSENYLTGSIPLEVGKLVNLGYLHISDNMLTGVIPSTLSACTSLEDLYLDGN 554
Query: 455 SVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLE--------NLSFNKM 496
+ G IP +L++L+ I+ELDLSRNNLSG IP +L+ NLSFN +
Sbjct: 555 FLEGPIPESLSSLRGIEELDLSRNNLSGKIPTYLQEFEVLSYLNLSFNNL 604
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499190|ref|XP_004160745.1| PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 235/590 (39%), Positives = 320/590 (54%), Gaps = 111/590 (18%)
Query: 14 VWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQLQ-DPLGVTKSWNNSISLCQWTGVTCG 72
V CF+LF L S + +NETDRLA L+ KS++ DPLG+ SWN S+ C W GV C
Sbjct: 19 VICFLLFNLPLPSA-AIGANETDRLALLSFKSEITVDPLGLFISWNESVHFCNWAGVIC- 76
Query: 73 HRHRRVTKLVLRNQSIGGFLSPYVGNLSFL------------------------------ 102
+ RRVT+L L + G LSP +GNLSFL
Sbjct: 77 NPQRRVTELNLPSYQFNGKLSPSIGNLSFLTTLNLPNNSFGGEIPQEIGSLSRLQELDFR 136
Query: 103 ------------------RFVNLASNNLHGEIPYE-----------------HGQLPPSI 127
+++ L NNL G +P E G++P +
Sbjct: 137 NNYFVGEIPITISNCSQLQYIGLLKNNLTGVLPMELGLLTKLEVFQCSSNELFGEIPETF 196
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPL 187
GNLS+L+ N H +P S GQLR+L+ L I N SG SSI+NISS+ +
Sbjct: 197 GNLSSLRGFWGTLNNFHGNIPSSFGQLRNLTALVIGANKLSGTIPSSIYNISSMRIFSLP 256
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQV-KI 246
N+LEG LP N+GF PNL+ L + N ++G +P +LSNAS L+ +S N FSG+V +
Sbjct: 257 VNQLEGGLPTNLGFIFPNLQILKIHTNQFSGPIPFTLSNASKLEEFVISNNMFSGKVPSL 316
Query: 247 DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
R +F ++ +NNLG G + DL+F+ L NC+ L + + N FGG LP I+N S
Sbjct: 317 ASTRHLEVFGID--RNNLGYGNVDDLNFLFPLVNCTNLSSVVISDNNFGGALPEYISNFS 374
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ-------- 358
+ + + G NQI+GTIP E+ NL L GLE NQLTG IP + G+L L
Sbjct: 375 TKLRIIGFGRNQIHGTIPTEIGNLFQLEALGLETNQLTGSIPSSFGKLYKLNDLFLNMNK 434
Query: 359 ------------------------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGI 394
L G +P SLG Q+L++L++S N+L+GA+P ++L I
Sbjct: 435 LSGTIPKSLGNLSALGRCNLRLNNLTGAIPPSLGESQSLLMLALSQNQLSGAIPKELLSI 494
Query: 395 LTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGN 454
+LSI LDLS N LTGSIP EVG L NL L +S+N + IP +LSACT+LE LY++GN
Sbjct: 495 SSLSIALDLSENYLTGSIPLEVGKLVNLGYLHISDNMLTGVIPSTLSACTSLEDLYLDGN 554
Query: 455 SVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLE--------NLSFNKM 496
+ G IP +L++L+ I+ELDLSRNNLSG IP +L+ NLSFN +
Sbjct: 555 FLEGPIPESLSSLRGIEELDLSRNNLSGKIPTYLQEFEVLSYLNLSFNNL 604
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.834 | 0.415 | 0.324 | 2.3e-59 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.832 | 0.422 | 0.324 | 1.1e-57 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.793 | 0.397 | 0.341 | 5.2e-56 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.797 | 0.404 | 0.315 | 1e-55 | |
| TAIR|locus:2047525 | 980 | AT2G24130 [Arabidopsis thalian | 0.918 | 0.480 | 0.315 | 1.2e-55 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.775 | 0.388 | 0.349 | 5e-55 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.799 | 0.504 | 0.330 | 8e-55 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.830 | 0.422 | 0.307 | 7.2e-54 | |
| UNIPROTKB|P93194 | 1109 | INRPK1 "Receptor-like protein | 0.904 | 0.418 | 0.323 | 2e-52 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.877 | 0.401 | 0.313 | 2.1e-49 |
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 2.3e-59, P = 2.3e-59
Identities = 144/444 (32%), Positives = 234/444 (52%)
Query: 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNI 136
R++ + L + +G + +G+LS L ++L+ NNL G P S+GNL++LQ +
Sbjct: 146 RLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFP-------ASLGNLTSLQKL 198
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
D A N++ +P+ + +L + F I+ N+FSG F +++NISSLE + +N G+L
Sbjct: 199 DFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLR 258
Query: 197 VNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256
+ G+ LPNL L + N +TG++P +L+N S+L+ D+S N+ SG + + F +L NL+
Sbjct: 259 ADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWW 318
Query: 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316
L N+LG + L+FI + NC++LE + N GG LP SIANLS+T+ +G
Sbjct: 319 LGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQ 378
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSSLG 368
N I GTIP ++ NLV+L LE N L+G +P + G+L NLQ + G +PS G
Sbjct: 379 NLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFG 438
Query: 369 NCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLS 428
N L L +++N G +P Q IP E+ + +L +DLS
Sbjct: 439 NMTRLQKLHLNSNSFHGRIP-QSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLS 497
Query: 429 ENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFL 488
N + P + L L N ++G +P A+ S++ L + N+ G IP+
Sbjct: 498 NNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPDIS 557
Query: 489 ENLSFNKMNETINDFCHHKPKVFA 512
+S ++ + N+ P+ A
Sbjct: 558 RLVSLKNVDFSNNNLSGRIPRYLA 581
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 144/444 (32%), Positives = 236/444 (53%)
Query: 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNI 136
R+ L L + +GG + +G+L+ L +NL NN+ G+ LP S+GNL+ L+ +
Sbjct: 139 RLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGK-------LPTSLGNLTLLEQL 191
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
++ N L +P + QL + L + N FSG+F +++N+SSL+L+ N G L
Sbjct: 192 ALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLR 251
Query: 197 VNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256
++G LPNL ++ N +TGS+P +LSN S L+ L ++ N+ +G + F +PNL
Sbjct: 252 PDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKL 310
Query: 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316
L N+LG+ + DL+F+ LTNC++LE G+ N GG LP+SIANLS+ ++ +G
Sbjct: 311 LFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGG 370
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSSLG 368
I G+IP ++ NL+NL L+ N L+GP+P ++G+L NL+ L G +P+ +G
Sbjct: 371 TLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIG 430
Query: 369 NCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLS 428
N L L +SNN G +P IP E+ ++ L++LD+S
Sbjct: 431 NMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGT-IPLEIMKIQQLLRLDMS 489
Query: 429 ENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFL 488
N +P + A L L + N ++G +P L +++ L L N G IP+
Sbjct: 490 GNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLK 549
Query: 489 ENLSFNKMNETINDFCHHKPKVFA 512
+ +++ + ND P+ FA
Sbjct: 550 GLVGVKEVDLSNNDLSGSIPEYFA 573
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 5.2e-56, P = 5.2e-56
Identities = 145/425 (34%), Positives = 223/425 (52%)
Query: 77 RVTKLVLRNQSIGGFLSPYVG-NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQN 135
++T L L + + G + +G +L L + L N L GEIP ++GNL++LQ
Sbjct: 152 KLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIP-------SALGNLTSLQE 204
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
D++ NRL +P SLGQL SL +++ +N SGM +SI+N+SSL EN+L G +
Sbjct: 205 FDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMI 264
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255
P N +L LE + + N + G +P S++NAS+L ++ + N FSG + F RL NL
Sbjct: 265 PTNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLT 324
Query: 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315
L +N T D FI+ LTNCSKL+ L N GGVLP S +NLS+++ +
Sbjct: 325 ELYLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALE 384
Query: 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL--------QLRGNVPSSL 367
LN+I G+IP ++ NL+ L L N G +P ++G L+NL L G++P ++
Sbjct: 385 LNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAI 444
Query: 368 GNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNL-VQLD 426
GN L +L + NK +G +P IP+E+ N++ L + ++
Sbjct: 445 GNLTELNILLLGTNKFSGWIP-YTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMIN 503
Query: 427 LSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPE 486
+S+N+ IP + L + E N ++G IP L + ++ L L N LSG IP
Sbjct: 504 VSKNNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPS 563
Query: 487 FLENL 491
L L
Sbjct: 564 ALGQL 568
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.0e-55, P = 1.0e-55
Identities = 134/425 (31%), Positives = 224/425 (52%)
Query: 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155
+G+L+ L ++L NNL G+ LP S+GNL++L+++ N + VP+ L +L
Sbjct: 158 LGSLTKLVILDLGRNNLKGK-------LPRSLGNLTSLKSLGFTDNNIEGEVPDELARLS 210
Query: 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
+ L +S N F G+F +I+N+S+LE ++ + GSL + G LPN+ +L++ +N+
Sbjct: 211 QMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGEND 270
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI 275
G++P +LSN S LQ ++ N +G + +F ++P+L L+ +N LG+ GDL+FI
Sbjct: 271 LVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLEFI 330
Query: 276 AHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNG 335
LTNC+ L+ + GG LP SIAN+S+ +I + N +G+IP ++ NL+ L
Sbjct: 331 DSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQR 390
Query: 336 FGLEYNQLTGPIPHAIGELRNL--------QLRGNVPSSLGNCQNLMLLSVSNNKLTGAL 387
L N LTGP+P ++G+L L ++ G +PS +GN L +L +SNN G +
Sbjct: 391 LQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIV 450
Query: 388 PPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE 447
PP IP E+ + LV L + N S +P + + L
Sbjct: 451 PPSLGKCSHMLDLRIGYNKLNGT-IPKEIMQIPTLVNLSMEGNSLSGSLPNDIGSLQNLV 509
Query: 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHK 507
L +E N +G +P L ++++L L N+ G IP + +++ + ND
Sbjct: 510 KLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPNIRGLMGVRRVDLSNNDLSGSI 569
Query: 508 PKVFA 512
P+ FA
Sbjct: 570 PEYFA 574
|
|
| TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 1.2e-55, P = 1.2e-55
Identities = 157/498 (31%), Positives = 250/498 (50%)
Query: 30 LHSNETDRLAYLAIKSQLQDPLGVTKSWNNS-ISLCQWTGVTCGHRHRRVTKLVLRNQSI 88
L S E D ++ L + + S ++ + +C W+GV C +V +L + + +
Sbjct: 19 LASKENDHELIKNPQNSLSSWISSSSSSSSMLVDVCNWSGVKCNKESTQVIELDISGRDL 78
Query: 89 GGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNL-SALQNIDIAGNRLHSRV 147
GG +SP + NL+ L ++L+ N + G++PP IG+L L+ + ++ N LH +
Sbjct: 79 GGEISPSIANLTGLTVLDLSRN-------FFVGKIPPEIGSLHETLKQLSLSENLLHGNI 131
Query: 148 PESLGQLRSLSFLDISENAFSGMFHSSIF---NISSLELIYPLENRLEGSLPVNIGFSLP 204
P+ LG L L +LD+ N +G +F + SSL+ I N L G +P+N L
Sbjct: 132 PQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLK 191
Query: 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNN 263
L L + N TG++P SLSN++NL+ +DL N SG++ +++P L L N+
Sbjct: 192 ELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNH 251
Query: 264 -LGTGAIGDLD-FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG 321
+ +L+ F A L N S L+ L N GG + S+ +LS ++ + N+I+G
Sbjct: 252 FVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHG 311
Query: 322 TIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSSLGNCQNL 373
+IPPE+ NL+NL L N L+GPIP + +L L+ L G +P LG+ L
Sbjct: 312 SIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRL 371
Query: 374 MLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLSENHFS 433
LL VS N L+G++P +P +G NL LDLS N+ +
Sbjct: 372 GLLDVSRNNLSGSIP-DSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLT 430
Query: 434 IEIPVSL-SACTTLE-YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN- 490
IPV + S L+ YL + N ++G IPL L+ + + +DLS N LSG IP L +
Sbjct: 431 GTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSC 490
Query: 491 LSFNKMNETINDFCHHKP 508
++ +N + N F P
Sbjct: 491 IALEHLNLSRNGFSSTLP 508
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 5.0e-55, P = 5.0e-55
Identities = 148/423 (34%), Positives = 225/423 (53%)
Query: 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156
G+LS L ++L NNL G+ P S+GNL++LQ +D N++ +P + +L+
Sbjct: 174 GSLSKLVLLSLGRNNLTGKFP-------ASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQ 226
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216
+ F I+ N F+G+F I+N+SSL + N G+L + G LPNL+ L + N++
Sbjct: 227 MIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSF 286
Query: 217 TGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIA 276
TG++P +LSN S+L+ LD+ NH +G++ + F RL NL L N+LG + GDLDF+
Sbjct: 287 TGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLG 346
Query: 277 HLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336
LTNCS+L+ + N GG LP+ IANLS+ + ++G N I G+IP + NLV+L
Sbjct: 347 ALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTL 406
Query: 337 GLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSSLGNCQNLMLLSVSNNKLTGALP 388
L N LTG +P ++GEL L+ L G +PSSLGN L L + NN G++P
Sbjct: 407 DLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIP 466
Query: 389 PQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEY 448
IP E+ L +LV L++S N + + L
Sbjct: 467 -SSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLA 525
Query: 449 LYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPE--------FLENLSFNKMNETI 500
L + N ++G IP L S++ L L N+ G IP+ FL+ LS N ++ TI
Sbjct: 526 LDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRGLTGLRFLD-LSKNNLSGTI 584
Query: 501 NDF 503
++
Sbjct: 585 PEY 587
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 8.0e-55, P = 8.0e-55
Identities = 141/427 (33%), Positives = 219/427 (51%)
Query: 74 RHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSAL 133
R R+ +LVL S+ G + +GNL+ L + L +N L G IP S+G L+ L
Sbjct: 124 RLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIP-------SSLGKLTGL 176
Query: 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG 193
++ +A N L +P S GQLR LSFL ++ N SG I+NISSL + + N+L G
Sbjct: 177 TDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSG 236
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
+LP N +LP+L+++ + N + G +P S+ NASN+ + + LN FSG V + R+ N
Sbjct: 237 TLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRN 296
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L RL + D F+ LTNCS L+ L FGGVLP S++NLSS+++ +
Sbjct: 297 LQRLELPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLS 356
Query: 314 MGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPS 365
+ N+I G++P ++ NLVNL L N LTG +P + +L+NL+ L G++P
Sbjct: 357 IRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPL 416
Query: 366 SLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQ- 424
++GN L + V N G +P IP E+ ++ L +
Sbjct: 417 TIGNLTQLTNMEVQFNAFGGTIP-STLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEI 475
Query: 425 LDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
LD+S N+ IP + + + + N ++G P + + ++ L L N L+G I
Sbjct: 476 LDVSHNNLEGSIPKEIGKLKNIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSI 535
Query: 485 PEFLENL 491
P L L
Sbjct: 536 PIALTQL 542
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 7.2e-54, P = 7.2e-54
Identities = 138/449 (30%), Positives = 230/449 (51%)
Query: 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNI 136
R+ L L + ++G + +G+L L ++ L N+L G+ P I NL++L +
Sbjct: 139 RLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPV-------FIRNLTSLIVL 191
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
++ N L +P+ + L + L ++ N FSG+F + +N+SSLE +Y L N G+L
Sbjct: 192 NLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLK 251
Query: 197 VNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256
+ G LPN+ +LS+ N TG++P +L+N S L++ + N +G + +F +L NL
Sbjct: 252 PDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHY 311
Query: 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316
L N+LG+ + GDL F+ LTNCS L + N GG LP SI N+S+ + + +
Sbjct: 312 LELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKG 371
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL--------QLRGNVPSSLG 368
N IYG+IP ++ NL+ L L N LTGP+P ++G L L + G +PS +G
Sbjct: 372 NLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIG 431
Query: 369 NCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGNLKNLVQLDLS 428
N L+ L +SNN G +PP IP E+ + LV L++
Sbjct: 432 NLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGT-IPKEIMQIPTLVHLNME 490
Query: 429 ENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEF- 487
N S +P + L L + N+++G +P L S++ + L N+ G IP+
Sbjct: 491 SNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPDIK 550
Query: 488 ----LEN--LSFNKMNETINDFCHHKPKV 510
++N LS N ++ +I+++ + K+
Sbjct: 551 GLMGVKNVDLSNNNLSGSISEYFENFSKL 579
|
|
| UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 2.0e-52, P = 2.0e-52
Identities = 160/495 (32%), Positives = 237/495 (47%)
Query: 10 LATSVWCFVLFLLDSHSCFGLHSNETDRLAYLAIKSQLQD-PLGVTKSWNNSISL-CQWT 67
+ +V F+LFL + S + + +D A L++ P +T+SWN S S C W
Sbjct: 1 MKVAVNTFLLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWL 60
Query: 68 GVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSI 127
GV C R + V L L + I G P + +L L+ V L+ N G IP + +
Sbjct: 61 GVECDRR-QFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQ-------L 112
Query: 128 GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPL 187
GN S L++ID++ N +P++LG L++L L + N+ G F S+ +I LE +Y
Sbjct: 113 GNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFT 172
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID 247
N L GS+P NIG ++ L L + N ++G +P SL N + LQ L L+ N+ G + +
Sbjct: 173 GNGLNGSIPSNIG-NMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVT 231
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
N L NL L+ N+L GAI LDF++ C +++ L N F G LP + N +S
Sbjct: 232 LNNLENLVYLDVRNNSL-VGAI-PLDFVS----CKQIDTISLSNNQFTGGLPPGLGNCTS 285
Query: 308 T--IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL-------- 357
F+ L+ G IP L L+ L N +G IP +G+ +++
Sbjct: 286 LREFGAFSCALS---GPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQN 342
Query: 358 QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVG 417
QL G +P LG L L + N L+G +P +P ++
Sbjct: 343 QLEGEIPGELGMLSQLQYLHLYTNNLSGEVP-LSIWKIQSLQSLQLYQNNLSGELPVDMT 401
Query: 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477
LK LV L L ENHF+ IP L A ++LE L + N TG IP L + K +K L L
Sbjct: 402 ELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGY 461
Query: 478 NNLSGHIPEFLENLS 492
N L G +P L S
Sbjct: 462 NYLEGSVPSDLGGCS 476
|
|
| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 2.1e-49, P = 2.1e-49
Identities = 153/488 (31%), Positives = 242/488 (49%)
Query: 17 FVLFLLDSHSCFGLHSNET--DRLAYLAIKSQLQDPLGVTKSW------NNSISLCQWTG 68
F+LF+ SC + ++ T + A L KS + ++ SW N S S W G
Sbjct: 13 FLLFISIILSC-SISASATIAEANALLKWKSTFTNSSKLS-SWVHDANTNTSFSCTSWYG 70
Query: 69 VTCGHRHRRVTKLVLRNQSIGGFLS--PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPS 126
V+C R + +L L N I G P++ +LS L +V+L+ N L G IP P
Sbjct: 71 VSCNSRGS-IEELNLTNTGIEGTFQDFPFI-SLSNLAYVDLSMNLLSGTIP-------PQ 121
Query: 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
GNLS L D++ N L + SLG L++L+ L + +N + + S + N+ S+ +
Sbjct: 122 FGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLAL 181
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKI 246
+N+L GS+P ++G +L NL L + +N TG +P L N ++ L LS N +G +
Sbjct: 182 SQNKLTGSIPSSLG-NLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPS 240
Query: 247 DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
L NL L +N L TG I + N + L N G +P S+ NL
Sbjct: 241 TLGNLKNLMVLYLYENYL-TGVIPP-----EIGNMESMTNLALSQNKLTGSIPSSLGNLK 294
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ-------- 358
+ + L ++ N + G IPP++ N+ ++ L N+LTG IP ++G L+NL
Sbjct: 295 N-LTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENY 353
Query: 359 LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQXXXXXXXXXXXXXXXXXXXXXIPTEVGN 418
L G +P LGN ++++ L ++NNKLTG++P IP E+GN
Sbjct: 354 LTGVIPPELGNMESMIDLQLNNNKLTGSIP-SSFGNLKNLTYLYLYLNYLTGVIPQELGN 412
Query: 419 LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478
+++++ LDLS+N + +P S T LE LY+ N ++G+IP + + L L N
Sbjct: 413 MESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTN 472
Query: 479 NLSGHIPE 486
N +G PE
Sbjct: 473 NFTGFFPE 480
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 513 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-62 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-49 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-28 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-10 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-07 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 7e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 8e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.002 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 3e-62
Identities = 173/538 (32%), Positives = 255/538 (47%), Gaps = 71/538 (13%)
Query: 19 LFLLDSHSCFGLHSNETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRV 78
FL + S LH+ E + L L+ KS + DPL +WN+S +C W G+TC + RV
Sbjct: 17 FFLFLNFSM--LHAEELELL--LSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRV 71
Query: 79 TKLVLRNQSIGGFLS------PYV-------GNLSF------------LRFVNLASNNLH 113
+ L ++I G +S PY+ LS LR++NL++NN
Sbjct: 72 VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131
Query: 114 GEIPYEH---------------GQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLS 158
G IP G++P IG+ S+L+ +D+ GN L ++P SL L SL
Sbjct: 132 GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191
Query: 159 FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG 218
FL ++ N G + + SL+ IY N L G +P IG L +L L + NN TG
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTG 250
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
+P SL N NLQ L L N SG + L L L+ N+L +G I +L + L
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPEL--VIQL 307
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
N LE L +N F G +P+++ +L +L + N+ G IP + NL L
Sbjct: 308 QN---LEILHLFSNNFTGKIPVALTSLPRLQVL-QLWSNKFSGEIPKNLGKHNNLTVLDL 363
Query: 339 EYNQLTGPIPHAIGELRNL--------QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQ 390
N LTG IP + NL L G +P SLG C++L + + +N +G LP +
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423
Query: 391 ILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450
L L LD+S N L G I + ++ +L L L+ N F +P S + LE L
Sbjct: 424 FTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLD 481
Query: 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLE--------NLSFNKMNETI 500
+ N +G++P L +L + +L LS N LSG IP+ L +LS N+++ I
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 3e-49
Identities = 134/412 (32%), Positives = 211/412 (51%), Gaps = 29/412 (7%)
Query: 90 GFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPE 149
G + + NL+ L F+ LASN L G+IP E GQ+ +L+ I + N L +P
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-------KSLKWIYLGYNNLSGEIPY 230
Query: 150 SLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209
+G L SL+ LD+ N +G SS+ N+ +L+ ++ +N+L G +P +I FSL L L
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISL 289
Query: 210 SVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAI 269
+ N+ +G +P + NL++L L N+F+G++ + LP L L N
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349
Query: 270 GDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS--TIILFTMGLNQIYGTIPPEV 327
+L +LT L TN G +P + + + +ILF+ N + G IP +
Sbjct: 350 KNLGKHNNLT------VLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPKSL 400
Query: 328 KNLVNLNGFGLEYNQLTGPIPHAIGELR--------NLQLRGNVPSSLGNCQNLMLLSVS 379
+L L+ N +G +P +L N L+G + S + +L +LS++
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460
Query: 380 NNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVS 439
NK G LP G L L DLS N +G++P ++G+L L+QL LSEN S EIP
Sbjct: 461 RNKFFGGLP-DSFGSKRLENL-DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518
Query: 440 LSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491
LS+C L L + N ++G IP + + + + +LDLS+N LSG IP+ L N+
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 91/325 (28%), Positives = 163/325 (50%), Gaps = 30/325 (9%)
Query: 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQN 135
+++ L L + S+ G + V L L ++L SNN G+IP LP LQ
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-------RLQV 336
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
+ + N+ +P++LG+ +L+ LD+S N +G + + +L + N LEG +
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255
P ++G + +L + ++ N+++G LP + + LD+S N+ G++ +P+L
Sbjct: 397 PKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455
Query: 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315
L+ +N G + +LE L N F G +P + +LS ++ +
Sbjct: 456 MLSLARNKFFGG-------LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLKLS 507
Query: 316 LNQIYGTIPPEV---KNLVNLNGFGLEYNQLTGPIPHAIGELRNL--------QLRGNVP 364
N++ G IP E+ K LV+L+ L +NQL+G IP + E+ L QL G +P
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLD---LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
Query: 365 SSLGNCQNLMLLSVSNNKLTGALPP 389
+LGN ++L+ +++S+N L G+LP
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 25/153 (16%)
Query: 43 IKSQLQDPLGVTKSWNNSISLCQ---WTGVTCG----HRHRRVTKLVLRNQSIGGFLSPY 95
+KS L PL WN + Q W+G C + L L NQ + GF+
Sbjct: 380 LKSSLGLPLRF--GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND 437
Query: 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155
+ L L+ +NL+ N++ G IP PS+G++++L+ +D++ N + +PESLGQL
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIP-------PSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
Query: 156 SLSFLDISENAFSG---------MFHSSIFNIS 179
SL L+++ N+ SG + H + FN +
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
L L L G IP ++ L++L ++LS N IP SL + T+LE L + NS GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 461 PLALNTLKSIKELDLSRNNLSGHIP 485
P +L L S++ L+L+ N+LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 121 GQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180
G +P I L LQ+I+++GN + +P SLG + SL LD+S N+F+G S+ ++S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 181 LELIYPLENRLEGSLPVNIG 200
L ++ N L G +P +G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435
L + N L G +P I + L + +LSGN + G+IP +G++ +L LDLS N F+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 436 IPVSLSACTTLEYLYMEGNSVTGSIPLAL 464
IP SL T+L L + GNS++G +P AL
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 354 LRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP 413
L N LRG +P+ + ++L +++S N + G +PP + I +L +L DLS N GSIP
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL-DLSYNSFNGSIP 483
Query: 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSA 442
+G L +L L+L+ N S +P +L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAALGG 512
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 74 RHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSAL 133
+R+ L L G + +G+LS L + L+ N L GEIP E + + L
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-------LSSCKKL 525
Query: 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG 193
++D++ N+L ++P S ++ LS LD+S+N SG ++ N+ SL + N L G
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585
Query: 194 SLP 196
SLP
Sbjct: 586 SLP 588
|
Length = 968 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-07
Identities = 23/41 (56%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 33 NETDRLAYLAIKSQLQ-DPLGVTKSWNNSIS-LCQWTGVTC 71
DR A LA KS L DP G SWN S S C WTGVTC
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 80/295 (27%), Positives = 115/295 (38%), Gaps = 22/295 (7%)
Query: 201 FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260
L NL L + NN T P SNL+ LDLS N + LPNL L+
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY 320
N+L D L+N S L L N LP I LS+ L + I
Sbjct: 172 FNDL-------SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII- 222
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLTGPI-----PHAIGELRNLQLRGNVPSSLGNCQNLML 375
+ + NL NL+G L N+L + L + + SSLG+ NL
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRE 281
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435
L +S N L+ ALP L +L L +LL+L L E+ L+ ++ N
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTL----KALELKLNSILLNNNILSNGE-TS 336
Query: 436 IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490
P +LS +L L+ N L +K+ + + + H+ + LE
Sbjct: 337 SPEALSILESLNNLWTLDN-ALDESNLNRYIVKNPNAIGSLLDLVKKHVNQLLEK 390
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 284 LEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL--NQIYGTIPPEVKNLVNLNGFGLEYN 341
++ GLD G +P I+ L L ++ L N I G IPP + ++ +L L YN
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRH---LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476
Query: 342 QLTGPIPHAIGELRNLQ--------LRGNVPSSLG 368
G IP ++G+L +L+ L G VP++LG
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 436 IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
IP +S L+ + + GNS+ G+IP +L ++ S++ LDLS N+ +G IPE L L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 187 LENR-LEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK 245
L+N+ L G +P +I L +L+ +++ N+ G++P SL + ++L++LDLS N F+G +
Sbjct: 425 LDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483
Query: 246 IDFNRLPNLFRLNFGKNNL 264
+L +L LN N+L
Sbjct: 484 ESLGQLTSLRILNLNGNSL 502
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSSLGNCQN 372
G IP ++ L +L L N + G IP ++G + +L+ G++P SLG +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 373 LMLLSVSNNKLTGALPPQILGIL 395
L +L+++ N L+G +P + G L
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 41/266 (15%)
Query: 224 LSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK 283
LS+ S+L L S+ + + +D +R NL L G N ++ L+ L+ CS+
Sbjct: 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN---LKSLYRLN----LSGCSR 716
Query: 284 LEAF-GLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNL------NGF 336
L++F + TNI S + L + + + E NL L +
Sbjct: 717 LKSFPDISTNI-------------SWLDLDETAIEEFPSNLRLE--NLDELILCEMKSEK 761
Query: 337 GLEYNQLTGP----IPHAIGEL--RNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQ 390
E Q P + ++ L ++ +PSS+ N L L + N LP
Sbjct: 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821
Query: 391 ILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450
I L LDLSG + P N+ L+LS E+P + + L +L
Sbjct: 822 I--NLESLESLDLSGCSRLRTFPDISTNIS---DLNLSRTGIE-EVPWWIEKFSNLSFLD 875
Query: 451 MEGNSVTGSIPLALNTLKSIKELDLS 476
M G + + L ++ LK ++ +D S
Sbjct: 876 MNGCNNLQRVSLNISKLKHLETVDFS 901
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNL 264
NL+ L + N T + NL++LDLS N+ + F+ LP+L L+ NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 283 KLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQ 342
L++ L N G +P S+ +++S +L + N G+IP + L +L L N
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVL-DLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 343 LTGPIPHAIGELRNLQLRGNVPSSLGNC 370
L+G +P A+G + N + G C
Sbjct: 502 LSGRVPAALGGRLLHRASFNFTDNAGLC 529
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.98 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.83 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.6 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.52 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.21 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.19 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.14 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.09 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.07 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.05 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.05 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.03 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.0 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.0 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.99 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.89 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.87 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.86 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.78 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.55 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.52 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.48 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.44 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.43 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.27 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.26 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.18 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.16 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.07 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.97 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.96 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.96 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.93 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.82 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.74 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.72 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.64 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.62 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.26 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.22 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.98 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.91 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.76 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.55 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.37 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.02 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.67 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.38 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.31 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.87 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.62 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.66 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.57 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.29 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.77 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.5 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.29 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.22 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.22 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.99 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.91 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.91 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 86.8 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=489.84 Aligned_cols=471 Identities=31% Similarity=0.553 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCc
Q 041374 34 ETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLH 113 (513)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 113 (513)
+.|+.++++||+++.+|.+++.+|....+||.|.||.|+. .++|+.|+++++.+.+.++..+..+++|++|+|++|.++
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 3788999999999988888899998888999999999975 368999999999888888878888888888888888877
Q ss_pred ccCCCCC------------------CCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 114 GEIPYEH------------------GQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 114 ~~~~~~~------------------~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+.+|..+ +.+|. +.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 6666432 11111 234444444554454444455555555555555555555555555555
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 5555555555555555544454444 445555555555555444444444555555555555544444444444444444
Q ss_pred EEEcCCCCCCCCCCCCc------------------hhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccc
Q 041374 256 RLNFGKNNLGTGAIGDL------------------DFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~ 317 (513)
+|++++|.+.+..+..+ ..+..+..+++|+.|++++|.+.+..|..+..++. ++.++++.|
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n 342 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSN 342 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC-CCEEECcCC
Confidence 44444444332111000 11122334444444555444444444444444443 444444444
Q ss_pred cceecCCccccCCCCCCEEeccCCcCccCC------------------------Ccccc---CCCCeEE-----eccCCc
Q 041374 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPI------------------------PHAIG---ELRNLQL-----RGNVPS 365 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------------------~~~~~---~l~~L~l-----~~~~~~ 365 (513)
.+.+.+|..+..+++|+.+++++|++.+.+ |..+. +++.|++ ++.+|.
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 444444444444444444444444444333 33222 2233332 223444
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhh----------------------hcccceEEccCCcCcccCCccccCCCCCC
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGI----------------------LTLSILLDLSGNLLTGSIPTEVGNLKNLV 423 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~----------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (513)
.+..+++|+.|++++|.+.+.+|..+... ...|+.|++++|++++..|..+..+++|+
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccC
Confidence 44444444445554444444333322211 12345666666777666777777778888
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc
Q 041374 424 QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 424 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~ 502 (513)
.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.||+++|++++.+|..+.+++.| ++++++|+
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 88888888887888888888888888888888888888888888888888888888888888888888888 88888888
Q ss_pred ccccCCC
Q 041374 503 FCHHKPK 509 (513)
Q Consensus 503 l~~~~p~ 509 (513)
++|.+|.
T Consensus 583 l~~~~p~ 589 (968)
T PLN00113 583 LHGSLPS 589 (968)
T ss_pred ceeeCCC
Confidence 8888885
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=399.64 Aligned_cols=420 Identities=30% Similarity=0.473 Sum_probs=327.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCC-----------------CCCCcccCCCCCCCEEEe
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEH-----------------GQLPPSIGNLSALQNIDI 138 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~~~~~l~~L~~L~l 138 (513)
.+++.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+ +.+|..++++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 467788888888877777777778888888888877776666543 345777888889999999
Q ss_pred ecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc
Q 041374 139 AGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG 218 (513)
Q Consensus 139 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~ 218 (513)
++|.+.+.+|..++++++|++|++++|.+++..|..+.++++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSG 298 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeecc
Confidence 99988888888899999999999999999888888899999999999999998888888777 78889999999988888
Q ss_pred cCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccC---
Q 041374 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG--- 295 (513)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~--- 295 (513)
.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCCCeeEeeC
Confidence 888888888888888888888888888888888888888888888765332 33444455555555555544
Q ss_pred ---------------------CcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCcc---c
Q 041374 296 ---------------------GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHA---I 351 (513)
Q Consensus 296 ---------------------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~ 351 (513)
+..|..+..++. ++.++++.|.+++.+|..+..++.|+.+++++|.+++.++.. +
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCC-CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 444444444444 666666666666666666666666666666666666655543 3
Q ss_pred cCCCCeEEec-----cCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEe
Q 041374 352 GELRNLQLRG-----NVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLD 426 (513)
Q Consensus 352 ~~l~~L~l~~-----~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 426 (513)
.+++.|++++ .+|..+ ..++|+.|++++|++.+.+|..+.... .|+.|++++|++.+.+|..+..+++|++|+
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 4455555544 244433 347889999999999888887766554 459999999999999999999999999999
Q ss_pred CCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc-cc
Q 041374 427 LSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND-FC 504 (513)
Q Consensus 427 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~-l~ 504 (513)
+++|.+++.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++++|++.|.+|.. ..+..+ ...+.+|+ ++
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC 608 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999965 223333 55566765 55
Q ss_pred cc
Q 041374 505 HH 506 (513)
Q Consensus 505 ~~ 506 (513)
|.
T Consensus 609 ~~ 610 (968)
T PLN00113 609 GG 610 (968)
T ss_pred CC
Confidence 53
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=289.37 Aligned_cols=360 Identities=22% Similarity=0.236 Sum_probs=257.6
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 180 (513)
.-+.|++++|.+.... +..|.++++|+.+++.+|.++. +|..-....+|+.|+|.+|.|+.+..+.+..++.
T Consensus 79 ~t~~LdlsnNkl~~id-------~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHID-------FEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccccccccCc-------HHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 3455777777666322 2245666777777777776654 5554444455777777777777666667777777
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcC
Q 041374 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 181 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
|+.|+++.|.+. .+|...+..-.++++|+|++|+|+..-...|..+.+|.+|.|+.|+++...+..|..+++|+.|+|.
T Consensus 151 lrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 777777777776 6665555445677777777777775555667777777777777777776666667777777777777
Q ss_pred CCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccC
Q 041374 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY 340 (513)
Q Consensus 261 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (513)
.|++..... ..+..+++|+.|.+..|.+...-...|..+.. ++.+++..|++...--.++..++.|+.|++++
T Consensus 230 rN~irive~------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k-me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 230 RNRIRIVEG------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK-MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ccceeeehh------hhhcCchhhhhhhhhhcCcccccCcceeeecc-cceeecccchhhhhhcccccccchhhhhccch
Confidence 777654321 34566677777777777777666666666666 77788888877766667777888888888888
Q ss_pred CcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCC
Q 041374 341 NQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK 420 (513)
Q Consensus 341 n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~ 420 (513)
|.+....+ .+|..+++|+.|+|++|.++ .+++.-+.....|++|++++|+++..-...|..++
T Consensus 303 NaI~rih~----------------d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 303 NAIQRIHI----------------DSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred hhhheeec----------------chhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 87774333 34566788888888888887 67777677777778888888888755555677888
Q ss_pred CCCEEeCCCCccCccCC---ccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc
Q 041374 421 NLVQLDLSENHFSIEIP---VSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN 494 (513)
Q Consensus 421 ~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l 494 (513)
+|++|||++|.+...+. ..|.++++|++|++.+|+++.....+|.+++.|+.|||.+|.|...-|.+|+.+ .|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 88888888888776554 346778888888888888886667788888888888888888887777787766 44
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=279.69 Aligned_cols=393 Identities=23% Similarity=0.339 Sum_probs=322.8
Q ss_pred CcEEEEEcCCCCCc-cccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIG-GFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 154 (513)
.-|+.+|+++|++. +..|.....|+.++.|.|...++. .+|+.++.+.+|+.|.++.|++.. +-..++.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~--------~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~L 77 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE--------QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDL 77 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh--------hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccc
Confidence 45899999999998 568999999999999999999887 889999999999999999999986 44568899
Q ss_pred CCCCEEEcccccCC-ccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcc-cccCCCCCCe
Q 041374 155 RSLSFLDISENAFS-GMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH-SLSNASNLQL 232 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~ 232 (513)
+.||.+++..|.+. ..+|..+..+..|+.|++++|++. ..|..+- ..+++-.|+|++|+|. .+|. -+.++..|-.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 99999999999884 457889999999999999999999 8898876 6788999999999998 5665 4678999999
Q ss_pred eeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccc-cCCcCchhhhccccccce
Q 041374 233 LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNI-FGGVLPLSIANLSSTIIL 311 (513)
Q Consensus 233 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~ 311 (513)
|||++|++. .+|..+..+..|++|.|++|.+.. ..+..+..+++|+.|.+++.. ....+|.++..+.+ +..
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~d 226 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRD 226 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhH------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhh-hhh
Confidence 999999997 567778899999999999998754 334567778888999998754 33457777777776 888
Q ss_pred EEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHH
Q 041374 312 FTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQI 391 (513)
Q Consensus 312 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~ 391 (513)
++++.|.+. .+|+.+..+++|+.|++++|+++..- -......+|++|++|+|+++ .+|..+
T Consensus 227 vDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~-----------------~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 227 VDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN-----------------MTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred ccccccCCC-cchHHHhhhhhhheeccCcCceeeee-----------------ccHHHHhhhhhhccccchhc-cchHHH
Confidence 899988887 67888888999999999999888321 11223368999999999998 899998
Q ss_pred HhhhcccceEEccCCcCc-ccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCC
Q 041374 392 LGILTLSILLDLSGNLLT-GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSI 470 (513)
Q Consensus 392 ~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 470 (513)
+....+ +.|.+.+|+++ +-+|..++.+.+|+.+..++|.+. -.|++++.|..|+.|.|+.|++. .+|+++.-++.|
T Consensus 288 cKL~kL-~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 288 CKLTKL-TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred hhhHHH-HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 877666 88999999875 247889999999999999999887 78999999999999999999998 899999999999
Q ss_pred CEEECCCCCCCcccchhhhcccCc---eEEccCC---cccccCCCC
Q 041374 471 KELDLSRNNLSGHIPEFLENLSFN---KMNETIN---DFCHHKPKV 510 (513)
Q Consensus 471 ~~L~l~~n~l~~~~p~~l~~l~~l---~l~l~~n---~l~~~~p~~ 510 (513)
+.||+++|+-.--+|.-=..-+.+ .+|.|=- ++.|+.|..
T Consensus 365 ~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pas 410 (1255)
T KOG0444|consen 365 KVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPAS 410 (1255)
T ss_pred ceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCccc
Confidence 999999998653333322222344 3443321 577777754
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-33 Score=263.86 Aligned_cols=355 Identities=22% Similarity=0.218 Sum_probs=241.4
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
.-++||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|++.+|.|. ++..+-...++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 4455777777776666666667777777777777665 33444444455666666666665 332222224556666666
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 291 (513)
+.|.++..--..+..-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++..+. ..++++++|+.|++..
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~------r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ------RSFKRLPKLESLDLNR 230 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH------HHhhhcchhhhhhccc
Confidence 6666663222334444556666666666665555556666666666666666665432 3445566666666666
Q ss_pred cccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC
Q 041374 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ 371 (513)
Q Consensus 292 n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~ 371 (513)
|.+...--..|.++++ ++.+.+..|.++..-...|..+.++++|+++.|++...- ..|+.+++
T Consensus 231 N~irive~ltFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn----------------~g~lfgLt 293 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN----------------EGWLFGLT 293 (873)
T ss_pred cceeeehhhhhcCchh-hhhhhhhhcCcccccCcceeeecccceeecccchhhhhh----------------cccccccc
Confidence 6655433344455554 555666666655554555555666666666666655322 23456678
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
.|+.|++|.|.|. .+...-+...+.|++|++++|+++...+..+..+.+|++|+|++|++...--..|..+++|++|||
T Consensus 294 ~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 9999999999998 444444556667799999999999777888999999999999999998655668899999999999
Q ss_pred CCCcccccc---cccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 452 EGNSVTGSI---PLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 452 ~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
++|.+...+ ...|..+++|+.|++.+|++....-.+|.+++.| .+||.+|.|-.--|.++.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 999988544 3457789999999999999984444599999999 999999998876666654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-36 Score=270.86 Aligned_cols=382 Identities=28% Similarity=0.409 Sum_probs=203.9
Q ss_pred ccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcc
Q 041374 94 PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHS 173 (513)
Q Consensus 94 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~ 173 (513)
++++++..++.++.+.|++. ++|..++.+..|+.++++.|++.. +|++++.+..|+.++..+|.++. .|+
T Consensus 85 ~aig~l~~l~~l~vs~n~ls--------~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~ 154 (565)
T KOG0472|consen 85 AAIGELEALKSLNVSHNKLS--------ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPE 154 (565)
T ss_pred HHHHHHHHHHHhhcccchHh--------hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcccccccc-Cch
Confidence 33444444444444444443 444444444444444444444443 34444444444444444444442 234
Q ss_pred cccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCC
Q 041374 174 SIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253 (513)
Q Consensus 174 ~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 253 (513)
+++++..+..+++.+|++. .+|+... .++.|++++...|.++ .+|..++.+.+|..|++..|++. ..| .|..+..
T Consensus 155 ~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~ 229 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSL 229 (565)
T ss_pred HHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHH
Confidence 4444444444444444444 3333333 2444555554444444 44444555555555555555544 233 4444445
Q ss_pred CcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCC
Q 041374 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNL 333 (513)
Q Consensus 254 L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 333 (513)
|++|+++.|++...+ .+..++++++..||+..|++. ..|..+..+.+ +.++|+++|.++ .+|..++++ .|
T Consensus 230 L~Elh~g~N~i~~lp------ae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs-L~rLDlSNN~is-~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 230 LKELHVGENQIEMLP------AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS-LERLDLSNNDIS-SLPYSLGNL-HL 299 (565)
T ss_pred HHHHHhcccHHHhhH------HHHhcccccceeeeccccccc-cCchHHHHhhh-hhhhcccCCccc-cCCcccccc-ee
Confidence 555555554443311 122334455555555555554 23444444443 555555555554 344445555 55
Q ss_pred CEEeccCCcCccCCCcc--------cc------------------------------------CCCCeEEecc----CCc
Q 041374 334 NGFGLEYNQLTGPIPHA--------IG------------------------------------ELRNLQLRGN----VPS 365 (513)
Q Consensus 334 ~~L~l~~n~~~~~~~~~--------~~------------------------------------~l~~L~l~~~----~~~ 365 (513)
+.|.+.||.+.....+. +. ..+.|++++. +|.
T Consensus 300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd 379 (565)
T KOG0472|consen 300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD 379 (565)
T ss_pred eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH
Confidence 55555555442100000 00 0111111111 222
Q ss_pred ccc---CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccC
Q 041374 366 SLG---NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSA 442 (513)
Q Consensus 366 ~l~---~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 442 (513)
... .-.-.++.+++.|++. ++|..+.........+.+++|.++ -+|..++.+++|..|++++|.+. .+|..++.
T Consensus 380 EVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 380 EVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred HHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 111 1122566777777776 677666555555556667777665 56666777777777777777666 67777777
Q ss_pred CCCCCEEeCCCCccc-----------------------ccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEc
Q 041374 443 CTTLEYLYMEGNSVT-----------------------GSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNE 498 (513)
Q Consensus 443 l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l 498 (513)
+-.|+.|+++.|++. ...|..+..+.+|.+||+.+|.+. .+|..+++++.+ ++++
T Consensus 457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLEL 535 (565)
T ss_pred hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEe
Confidence 777777777766543 334445778889999999999998 799999999999 9999
Q ss_pred cCCccc
Q 041374 499 TINDFC 504 (513)
Q Consensus 499 ~~n~l~ 504 (513)
++|+|.
T Consensus 536 ~gNpfr 541 (565)
T KOG0472|consen 536 DGNPFR 541 (565)
T ss_pred cCCccC
Confidence 999998
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-34 Score=275.99 Aligned_cols=367 Identities=26% Similarity=0.380 Sum_probs=312.7
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
+-++..|-.|+++|.++|. .+|..+..+++++.|.+....+.. +|+.++.+.+|++|.+++|++... ...+.
T Consensus 4 gVLpFVrGvDfsgNDFsg~------~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~v-hGELs 75 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGD------RFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISV-HGELS 75 (1255)
T ss_pred cccceeecccccCCcCCCC------cCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhh-hhhhc
Confidence 4577888899999999976 678889999999999999888865 899999999999999999998744 45678
Q ss_pred CCCCCcEEeCCCCcCc-ccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 177 NISSLELIYPLENRLE-GSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
.++.|+.+.+..|++. ..+|..++ .+..|..|+|++|+++ ..|..+..-+++-.|+|++|+|..+....|.+++.|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 8999999999999886 46899999 9999999999999999 8899999999999999999999866556678999999
Q ss_pred EEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccce-ecCCccccCCCCCC
Q 041374 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY-GTIPPEVKNLVNLN 334 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~ 334 (513)
.|+|++|++... |..+..+..|++|.+++|.+...-...+..+.+ ++.+.+++.+-+ ..+|..+..+.+|.
T Consensus 154 fLDLS~NrLe~L-------PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 154 FLDLSNNRLEML-------PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred hhccccchhhhc-------CHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhh
Confidence 999999998763 355667788999999999765332233334443 777777776544 56888899999999
Q ss_pred EEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCc
Q 041374 335 GFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPT 414 (513)
Q Consensus 335 ~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~ 414 (513)
.+|++.|++. .+|..+.++++|+.|+||+|+++ ++.........+ +.|+++.|+++ .+|.
T Consensus 226 dvDlS~N~Lp-----------------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 226 DVDLSENNLP-----------------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL-ETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hccccccCCC-----------------cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh-hhhccccchhc-cchH
Confidence 9999999998 34555666789999999999997 555555444444 99999999999 8999
Q ss_pred cccCCCCCCEEeCCCCccCc-cCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccC
Q 041374 415 EVGNLKNLVQLDLSENHFSI-EIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493 (513)
Q Consensus 415 ~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 493 (513)
.++.+++|+.|...+|++.- -+|..++.+.+|+.+..++|++. .+|++++.|..|+.|.|++|++- .+|+.+.-|+.
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~ 363 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD 363 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence 99999999999999998763 47999999999999999999997 89999999999999999999987 69999999999
Q ss_pred c-eEEccCCcc
Q 041374 494 N-KMNETINDF 503 (513)
Q Consensus 494 l-~l~l~~n~l 503 (513)
+ .+|+..|+-
T Consensus 364 l~vLDlreNpn 374 (1255)
T KOG0444|consen 364 LKVLDLRENPN 374 (1255)
T ss_pred cceeeccCCcC
Confidence 9 999999963
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-33 Score=251.14 Aligned_cols=362 Identities=29% Similarity=0.419 Sum_probs=241.4
Q ss_pred cCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC
Q 041374 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171 (513)
Q Consensus 92 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 171 (513)
+|+.++.+..++.+++++|.+. ++|+.++.+..|+.++..+|+++. .|..+..+.+|..+++.+|++....
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~--------el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~ 176 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELK--------ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALP 176 (565)
T ss_pred ccHHHhhhhhhhhhhcccccee--------ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCC
Confidence 6778888999999999999887 677778888888888888888776 6666777777777777777776554
Q ss_pred cccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCC
Q 041374 172 HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRL 251 (513)
Q Consensus 172 ~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 251 (513)
|..+. ++.|+.++...|-++ .+|+.++ .+.+|+.|++.+|++. .+| .|..+..|+++.+..|++.-........+
T Consensus 177 ~~~i~-m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 177 ENHIA-MKRLKHLDCNSNLLE-TLPPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred HHHHH-HHHHHhcccchhhhh-cCChhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 44444 777777777777666 6777776 6777777777777766 455 45555555555555555542222223355
Q ss_pred CCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecccccee----------
Q 041374 252 PNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG---------- 321 (513)
Q Consensus 252 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~---------- 321 (513)
+++..||+.+|++...+ ..+.-+++|+.||+++|.+++ .|..++++ .++.+.+.+|.+..
T Consensus 252 ~~l~vLDLRdNklke~P-------de~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVP-------DEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred ccceeeeccccccccCc-------hHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchHHHHHHHHcccH
Confidence 55555555555554422 223333445555555555542 23333433 13333333333210
Q ss_pred ---------------------------cCC----ccccCCCCCCEEeccCCcCcc-------------------------
Q 041374 322 ---------------------------TIP----PEVKNLVNLNGFGLEYNQLTG------------------------- 345 (513)
Q Consensus 322 ---------------------------~~~----~~~~~~~~L~~L~l~~n~~~~------------------------- 345 (513)
+.+ +....+.+.+.|++++-+++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence 000 011122334455555544442
Q ss_pred CCCccccCCCCeE----Eecc----CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcccc
Q 041374 346 PIPHAIGELRNLQ----LRGN----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVG 417 (513)
Q Consensus 346 ~~~~~~~~l~~L~----l~~~----~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~ 417 (513)
++|..+..++++. ++.+ +|..++.+++|..|++++|.+. ++|...+.... |+.|+++.|+|. .+|..+.
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~-Lq~LnlS~NrFr-~lP~~~y 478 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR-LQTLNLSFNRFR-MLPECLY 478 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhh-hheecccccccc-cchHHHh
Confidence 3333332222211 2222 4556678999999999999887 89999888777 599999999998 7888888
Q ss_pred CCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 418 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
....++.+-.++|++....|..+.+|.+|..||+.+|.+. .+|..+++|++|+.|++.+|+|.
T Consensus 479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888888888889998666667999999999999999998 89999999999999999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-30 Score=254.30 Aligned_cols=386 Identities=27% Similarity=0.369 Sum_probs=225.8
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
++..|++++|.+.. .|..+..+.+|+.|+++.|.|. .+|.+..++.+|++++|.+|.+.. .|.++..+++
T Consensus 46 ~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~--------~vp~s~~~~~~l~~lnL~~n~l~~-lP~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIR--------SVPSSCSNMRNLQYLNLKNNRLQS-LPASISELKN 115 (1081)
T ss_pred eeEEeecccccccc-CCchhhhHHHHhhcccchhhHh--------hCchhhhhhhcchhheeccchhhc-CchhHHhhhc
Confidence 48889999888764 6777888899999999999887 677788899999999998888765 8889999999
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.+. .+|..+..++.+..+..++|.....++. ..++.+++..|.+.+.++..+..++. .|++.
T Consensus 116 l~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 116 LQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred ccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 999999999876 4567777777777777777722212221 12666777777777666666666655 67777
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecc
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
+|.+. ...+..+++|+.+....|+++.... .-++++.|+.+.|.+....+ ...+..+++++++.
T Consensus 187 ~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----------~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 187 YNEME---VLDLSNLANLEVLHCERNQLSELEI----------SGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISH 250 (1081)
T ss_pred cchhh---hhhhhhccchhhhhhhhcccceEEe----------cCcchheeeeccCcceeecc---ccccccceeeecch
Confidence 77765 2234555666666666665543211 11344555555554442211 12223355555555
Q ss_pred ccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCC---eEEec----cCCccccCCCCCCEEecccCcCcccChH
Q 041374 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRN---LQLRG----NVPSSLGNCQNLMLLSVSNNKLTGALPP 389 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~---L~l~~----~~~~~l~~~~~L~~L~ls~n~l~~~~p~ 389 (513)
+++++ +|.++..+.+|+.++..+|.++ .+|..+...++ |.... .+|+.....+.|++|++..|++. ..|.
T Consensus 251 n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 251 NNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence 55553 3355555555555555555553 33333322222 22111 13444444555555665555554 4443
Q ss_pred HHHhhhc-------------------------ccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCc-cccCC
Q 041374 390 QILGILT-------------------------LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV-SLSAC 443 (513)
Q Consensus 390 ~~~~~~~-------------------------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l 443 (513)
.++.... .|+.|.+.+|.+++...+.+.+++.|+.|+|++|++. .+|. .+.++
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch
Confidence 3221111 1234555555555555555555666666666666665 3333 34555
Q ss_pred CCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 444 TTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.+ .+|+|.|+|+
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 56666666666665 44555555555555555555544 334 44444555 5555555443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-28 Score=240.60 Aligned_cols=378 Identities=27% Similarity=0.377 Sum_probs=269.1
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
++..++++.|.+-...-+.+.+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+.. .|.+..++.+
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~--------~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~ 92 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS--------SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRN 92 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc--------cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhc
Confidence 3666666666654433334444455888888888776 667777778888888888887765 6677778888
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|+++.|.+|..+ ..|..+..+.+|++|+++.|.+. .+|.-+. .+..++.+..++|.-... ++... ++.+++.
T Consensus 93 l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~ 164 (1081)
T KOG0618|consen 93 LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQR----LGQTS-IKKLDLR 164 (1081)
T ss_pred chhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhh----hcccc-chhhhhh
Confidence 888888887765 55777888888888888888887 7777666 667777777777722212 22222 7777788
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecc
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
.|.+.+.++.++..+.. .|+|..|.+.. ..+..+.+|+.+....|.+....- .-..++.+....
T Consensus 165 ~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---------~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 165 LNVLGGSFLIDIYNLTH--QLDLRYNEMEV---------LDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADH 228 (1081)
T ss_pred hhhcccchhcchhhhhe--eeecccchhhh---------hhhhhccchhhhhhhhcccceEEe-----cCcchheeeecc
Confidence 88877777777777766 78888887753 456777788888877776553211 111266677777
Q ss_pred ccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhc
Q 041374 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILT 396 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~ 396 (513)
|.+....+. ....+|++++++.|+++ ++|.|++.|.+|+.++..+|.++ .+|..++....
T Consensus 229 n~l~~~~~~--p~p~nl~~~dis~n~l~-----------------~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 229 NPLTTLDVH--PVPLNLQYLDISHNNLS-----------------NLPEWIGACANLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred Ccceeeccc--cccccceeeecchhhhh-----------------cchHHHHhcccceEecccchhHH-hhHHHHhhhhh
Confidence 766633222 22356788888888887 56677788889999999999886 88888877666
Q ss_pred ccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccc--------------------------cCCCCCCEEe
Q 041374 397 LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSL--------------------------SACTTLEYLY 450 (513)
Q Consensus 397 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------------~~l~~L~~L~ 450 (513)
+ +.|++.+|.+. -+|.....++.|++||+..|.+. ..|+.+ ..++.|+.|+
T Consensus 289 L-~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 289 L-VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred H-HHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 6 88888888887 66777777888888888888876 444322 1134577888
Q ss_pred CCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
+.+|.+++..-..+.+.+.||.|+|++|++......++.+++.| .++||+|+++ .+|..+
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 88888887777778888889999999998874444478888888 8999999887 555543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=226.11 Aligned_cols=363 Identities=20% Similarity=0.228 Sum_probs=221.3
Q ss_pred CcEEEEEcCCCCCcc--ccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCC-CCCCEEEeecCcccccCccccC
Q 041374 76 RRVTKLVLRNQSIGG--FLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNL-SALQNIDIAGNRLHSRVPESLG 152 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~ 152 (513)
..|+.+.+.-..+.. ..+..|.+|++|++|.+..+....... ....+|..+..+ .+|+.|++.++.+.. +|..|
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~-~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE-VRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccc-ceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-
Confidence 456666554333322 234568889999999997664321100 001355566655 469999999888765 67666
Q ss_pred CCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCe
Q 041374 153 QLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQL 232 (513)
Q Consensus 153 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 232 (513)
...+|++|++++|.+.. ++..+..+++|+.++++++.....+|. +. .+++|++|++++|.....+|..+.++++|+.
T Consensus 609 ~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 46889999999988764 566678889999999988765546774 33 6788999999988766688888889999999
Q ss_pred eeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceE
Q 041374 233 LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312 (513)
Q Consensus 233 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 312 (513)
|++++|.....+|..+ ++++|+.|++++|......+ . ..++|+.|++++|.+.. +|..+ .++. +..+
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p------~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~-L~~L 752 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP------D---ISTNISWLDLDETAIEE-FPSNL-RLEN-LDEL 752 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc------c---ccCCcCeeecCCCcccc-ccccc-cccc-cccc
Confidence 9999876555666554 68889999998885432111 1 13467777777776643 33322 1222 4444
Q ss_pred Eeccccce-------ecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcc
Q 041374 313 TMGLNQIY-------GTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTG 385 (513)
Q Consensus 313 ~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~ 385 (513)
.+..+... ...+......++|+.|++++|...+.+| .++.++++|+.|++++|...+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP----------------~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP----------------SSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccC----------------hhhhCCCCCCEEECCCCCCcC
Confidence 44332110 0011111223456666666655444333 334445666666666664444
Q ss_pred cChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccccc
Q 041374 386 ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALN 465 (513)
Q Consensus 386 ~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 465 (513)
.+|..+ ..+.|+.|++++|.....+|.. .++|+.|++++|.+. .+|.++..+++|+.|++++|+-...+|..+.
T Consensus 817 ~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 817 TLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred eeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 555443 2334466666665433333322 245666666666665 5666666666666666666544335555666
Q ss_pred CCCCCCEEECCCCC
Q 041374 466 TLKSIKELDLSRNN 479 (513)
Q Consensus 466 ~l~~L~~L~l~~n~ 479 (513)
.+++|+.+++++|.
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 66666666666664
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=221.91 Aligned_cols=345 Identities=19% Similarity=0.187 Sum_probs=248.7
Q ss_pred cccCCCCCCCEEEeecCcc------cccCccccCCCC-CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCc
Q 041374 125 PSIGNLSALQNIDIAGNRL------HSRVPESLGQLR-SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197 (513)
Q Consensus 125 ~~~~~l~~L~~L~l~~n~l------~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~ 197 (513)
.+|.++++|+.|.+..+.. ...+|..|..++ +|+.|.+.++++... |..+ ...+|+.|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-cccc
Confidence 4678889999998866532 234566666664 588999988877533 5555 5678889999988887 6777
Q ss_pred cccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcc
Q 041374 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277 (513)
Q Consensus 198 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 277 (513)
.+. .+++|++++++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...... +..
T Consensus 629 ~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L------p~~ 700 (1153)
T PLN03210 629 GVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL------PTG 700 (1153)
T ss_pred ccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc------CCc
Confidence 665 788899999988765556664 777888999999888766678888888889999998887533321 122
Q ss_pred cCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCe
Q 041374 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL 357 (513)
Q Consensus 278 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 357 (513)
+ ++++|+.|++++|.....+|.. ...++.++++.+.+. .+|..+ .+++|++|++.++... .+...+..+
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l--- 769 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE-KLWERVQPL--- 769 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchh-hcccccccc---
Confidence 2 5678888888887655544432 234677777777664 345443 4667777776654322 111111110
Q ss_pred EEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCC
Q 041374 358 QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIP 437 (513)
Q Consensus 358 ~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 437 (513)
.+.....+++|+.|++++|...+.+|..+..+ +.|+.|++++|...+.+|..+ ++++|+.|++++|.....+|
T Consensus 770 -----~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 770 -----TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred -----chhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 01112235789999999998887899887654 455999999986555777665 78999999999997665666
Q ss_pred ccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc
Q 041374 438 VSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 438 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~ 502 (513)
.. .++|+.|+|++|.+. .+|..+..+++|+.|++++|+-...+|..+..+++| .+++++|.
T Consensus 843 ~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 53 468999999999998 789999999999999999977555788888889999 99988884
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-24 Score=196.62 Aligned_cols=386 Identities=19% Similarity=0.210 Sum_probs=223.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeec-CcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG-NRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l 154 (513)
...+.|+|..|++....+.+|..+++||.|||+.|+|+. .-|++|.+++.|..|-+.+ |+|+......|.++
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-------I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-------IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhh-------cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 578899999999999999999999999999999999983 2366899999888776666 88988777789999
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccc------------ccCcc
Q 041374 155 RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT------------GSLPH 222 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~------------~~~~~ 222 (513)
..|+.|.+.-|++.-...+.|..++++..|.+.+|.+. .++...+..+..++.+.+..|.+. ...|.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 99999999999998888889999999999999999998 788766667888888888877622 11222
Q ss_pred cccCCCCCCeeeCccccccccccccccCCCCCcEE--Ec-CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCc
Q 041374 223 SLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL--NF-GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP 299 (513)
Q Consensus 223 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L--~L-~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 299 (513)
.++...-..-..+.++++..+-+..|... ++.+ .+ +.+...... -...+..+++|+.+++++|++++.-+
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~c-----P~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSIC-----PAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcC-----hHHHHhhcccceEeccCCCccchhhh
Confidence 22222222222233333322222111110 1111 00 111111110 11224445555555555555555555
Q ss_pred hhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecc
Q 041374 300 LSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVS 379 (513)
Q Consensus 300 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls 379 (513)
.+|.+... ++.+.+..|++...-...|..+..|+.|++.+|+++...|..|..+. .|..|++-
T Consensus 292 ~aFe~~a~-l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~----------------~l~~l~l~ 354 (498)
T KOG4237|consen 292 GAFEGAAE-LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF----------------SLSTLNLL 354 (498)
T ss_pred hhhcchhh-hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc----------------eeeeeehc
Confidence 55555444 55555555555444444455555555555555555544444443322 22222222
Q ss_pred cCcCc-----------------ccChHHHHhhhcccceEEccCCcCcc---cCCcc---------ccCCCCCCEEeCCCC
Q 041374 380 NNKLT-----------------GALPPQILGILTLSILLDLSGNLLTG---SIPTE---------VGNLKNLVQLDLSEN 430 (513)
Q Consensus 380 ~n~l~-----------------~~~p~~~~~~~~~l~~L~l~~n~l~~---~~~~~---------~~~l~~L~~L~l~~n 430 (513)
.|.+. ...|. ++.+..++.+.+++..+.+ ..|+. ...++.+.+.-=-.|
T Consensus 355 ~Np~~CnC~l~wl~~Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 355 SNPFNCNCRLAWLGEWLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred cCcccCccchHHHHHHHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence 22111 00010 1112222344444433221 11111 122334444322233
Q ss_pred ccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCC
Q 041374 431 HFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 431 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n 501 (513)
.....+|..+. ..-.++++.+|.++ .+|.. .+.+| .+|+++|++.-.--..|.+++++ ++=+++|
T Consensus 433 k~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 33335555432 23467888888887 66666 56677 78888888875444577788888 7777765
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=195.66 Aligned_cols=267 Identities=27% Similarity=0.313 Sum_probs=151.1
Q ss_pred CCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEcc
Q 041374 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVR 212 (513)
Q Consensus 133 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~ 212 (513)
-..|+++++.++. +|..+. ++|+.|++++|.++.. |. ..++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc----ccccceeecc
Confidence 4455555555553 444443 3555556655555532 22 1355666666666665 45532 3466677777
Q ss_pred CCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc
Q 041374 213 QNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292 (513)
Q Consensus 213 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n 292 (513)
+|.++ .+|.. .++|+.|++++|++.. +|. .+++|+.|++++|.+..... -...|+.|++++|
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~----------lp~~L~~L~Ls~N 332 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWAYNN 332 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCC----------CcccccccccccC
Confidence 77666 34432 2456667777776653 332 23567777777776654211 0123444555555
Q ss_pred ccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCC
Q 041374 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~ 372 (513)
.+.+ +|. -..+|+.|++++|++++ +|.. .++
T Consensus 333 ~L~~--------------------------LP~---lp~~Lq~LdLS~N~Ls~-LP~l-------------------p~~ 363 (788)
T PRK15387 333 QLTS--------------------------LPT---LPSGLQELSVSDNQLAS-LPTL-------------------PSE 363 (788)
T ss_pred cccc--------------------------ccc---cccccceEecCCCccCC-CCCC-------------------Ccc
Confidence 4432 111 01256666666666662 2221 134
Q ss_pred CCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
|+.|++++|++. .+|.. +..|+.|++++|+++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|+++
T Consensus 364 L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVY 430 (788)
T ss_pred cceehhhccccc-cCccc----ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhc
Confidence 556666666665 45532 234567777777776 34432 256777777777776 45543 2456777777
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 453 GNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
+|+++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 77777 6777777777788888888888777777665443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-21 Score=194.85 Aligned_cols=161 Identities=30% Similarity=0.355 Sum_probs=122.1
Q ss_pred cceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccCh
Q 041374 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 309 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
++.+++++|++.+ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|
T Consensus 304 L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l-------------------p~~Lq~LdLS~N~Ls-~LP 358 (788)
T PRK15387 304 LQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL-------------------PSGLQELSVSDNQLA-SLP 358 (788)
T ss_pred cceeECCCCcccc-CCCC---cccccccccccCcccc-cccc-------------------ccccceEecCCCccC-CCC
Confidence 6666666666553 3321 2356677777777763 3321 147999999999998 566
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 468 (513)
.. +..++.|++++|+++ .+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|+++ .+|..+ .
T Consensus 359 ~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~ 422 (788)
T PRK15387 359 TL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---S 422 (788)
T ss_pred CC----Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---h
Confidence 42 345689999999998 46643 357999999999998 46654 368999999999998 567543 4
Q ss_pred CCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 469 SIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 469 ~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
+|+.|++++|+++ .+|..+.+++.+ .+++++|+|+|.+|..+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 6888999999998 789999999999 99999999999987654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=189.18 Aligned_cols=182 Identities=21% Similarity=0.349 Sum_probs=108.2
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.+...|+++++.++. +|..+. ++|+.|++++|.++.. |..+. .+|+.|++++|.++ .+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 356777887777765 555443 4678888888877743 44333 47788888888777 6776543 4688888
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccc
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++..+. .+ .++|+.|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~-------~l--p~sL~~L~Ls 312 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPA-------HL--PSGITHLNVQ 312 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcc-------cc--hhhHHHHHhc
Confidence 8888877 5666553 47888888888877 3454443 478888888887764221 11 1356667777
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCc
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 344 (513)
+|.+... |..+ +..++.+++++|.+++ +|..+. ++|+.|++++|++.
T Consensus 313 ~N~Lt~L-P~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 313 SNSLTAL-PETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred CCccccC-Cccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 7666532 2211 1124444444444432 333221 34555555555444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-22 Score=178.98 Aligned_cols=348 Identities=19% Similarity=0.166 Sum_probs=185.3
Q ss_pred CEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCC-CcCcccCCccccCCCCCCCEEEcc
Q 041374 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE-NRLEGSLPVNIGFSLPNLEDLSVR 212 (513)
Q Consensus 134 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~lp~~~~~~l~~L~~L~l~ 212 (513)
..++|..|.|+...|..|+.+++||.|||++|.|+.+.|.+|.++.++..|-+.+ |+|+ .+|...+.++..|+.|.+.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence 3455555555555555555556666666666666555555665555555554444 5555 5666665566666666666
Q ss_pred CCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCc------hhhcccCCCccccc
Q 041374 213 QNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDL------DFIAHLTNCSKLEA 286 (513)
Q Consensus 213 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~------~~~~~l~~~~~L~~ 286 (513)
-|++.....+.+..++++..|.+.+|.+.......|..+..++.+.+..|.+.....-.+ ..+..++.......
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 666665555566666666666666666664444466666666666666555322111000 00111222222223
Q ss_pred ccccccccCCcCchhhhccccccceEEeccccceecCC-ccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCc
Q 041374 287 FGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP-PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~ 365 (513)
..+.+.++.......+......+..--.+.+...+..| ..|..+++|+.+++++|++++.-+.+|..+
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~----------- 297 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA----------- 297 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch-----------
Confidence 33333333322222221110001111111111222223 357889999999999999997666665433
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc----------
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE---------- 435 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---------- 435 (513)
..+++|.|.+|++. .+....|...+.|+.|++.+|+|+..-|..|..+..|.+|++-.|++.-.
T Consensus 298 -----a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 298 -----AELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred -----hhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 55666666666665 45555555555566666666666655566666666666666665554310
Q ss_pred -------CCccccCCCCCCEEeCCCCccc------------------------------------ccccccccCCCCCCE
Q 041374 436 -------IPVSLSACTTLEYLYMEGNSVT------------------------------------GSIPLALNTLKSIKE 472 (513)
Q Consensus 436 -------~~~~~~~l~~L~~L~L~~n~l~------------------------------------~~~~~~~~~l~~L~~ 472 (513)
.|.+ +.-..++.+.+++..+. ..+|..+. ..-.+
T Consensus 372 r~~~~~~~~~C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~te 448 (498)
T KOG4237|consen 372 RKKSVVGNPRC-QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTE 448 (498)
T ss_pred hhCCCCCCCCC-CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHH
Confidence 0000 00113344444433221 12332221 23567
Q ss_pred EECCCCCCCcccchhhhcccCceEEccCCcccc
Q 041374 473 LDLSRNNLSGHIPEFLENLSFNKMNETINDFCH 505 (513)
Q Consensus 473 L~l~~n~l~~~~p~~l~~l~~l~l~l~~n~l~~ 505 (513)
+++.+|.++ .+|.. .+.++.+|+++|+++-
T Consensus 449 lyl~gn~~~-~vp~~--~~~~l~~dls~n~i~~ 478 (498)
T KOG4237|consen 449 LYLDGNAIT-SVPDE--LLRSLLLDLSNNRISS 478 (498)
T ss_pred Hhcccchhc-ccCHH--HHhhhhcccccCceeh
Confidence 889999998 67766 4555589999998763
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=177.10 Aligned_cols=246 Identities=23% Similarity=0.362 Sum_probs=142.9
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+...|+++++.++.. |..+. ++++.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+ ..+|+.|++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 455666666665532 33221 34555555555555 4554432 35555555555555 344333 124555555
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+. .+|..+. .+|+.|++ ++|.+.. +|..+. ..++.++++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~L------------------------------s~N~L~~-LP~~l~---~sL~~L~Ls 291 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDL------------------------------FHNKISC-LPENLP---EELRYLSVY 291 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEEC------------------------------cCCccCc-cccccC---CCCcEEECC
Confidence 555544 2332221 23444444 4444432 222221 136666666
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+|++++ +|..+. +.|+.|++++|.++. +|.. + .++|+.|++++|.++ .+|..+ +
T Consensus 292 ~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~----------------l--~~sL~~L~Ls~N~Lt-~LP~~l---~ 345 (754)
T PRK15370 292 DNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPET----------------L--PPGLKTLEAGENALT-SLPASL---P 345 (754)
T ss_pred CCcccc-Ccccch--hhHHHHHhcCCcccc-CCcc----------------c--cccceeccccCCccc-cCChhh---c
Confidence 666653 343322 357777777777763 2221 1 257888888888887 467544 3
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccc----cCCCCCC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLAL----NTLKSIK 471 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~ 471 (513)
+.|+.|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+ ..++.+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 45688888888887 4665543 67888888888887 5676654 36888888888887 555544 3347788
Q ss_pred EEECCCCCCC
Q 041374 472 ELDLSRNNLS 481 (513)
Q Consensus 472 ~L~l~~n~l~ 481 (513)
.+++.+|+++
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8888888887
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-19 Score=173.28 Aligned_cols=285 Identities=24% Similarity=0.241 Sum_probs=171.7
Q ss_pred EEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc----cCcccccCCCCCCeeeCccccccc------cccccccCCC
Q 041374 183 LIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG----SLPHSLSNASNLQLLDLSLNHFSG------QVKIDFNRLP 252 (513)
Q Consensus 183 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~~~~------~~~~~~~~l~ 252 (513)
.|++..+.+.+.--..++..+..|++++++++.++. .++..+...+.+++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 345555555522222222255667788888777643 234445566667777777776551 1233455566
Q ss_pred CCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCC-C
Q 041374 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNL-V 331 (513)
Q Consensus 253 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~ 331 (513)
+|+.|++++|.+.......+ ...... ++|+.|++++|.+.+.... .+...+..+ +
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~--~~l~~~-~~L~~L~ls~~~~~~~~~~---------------------~l~~~l~~~~~ 137 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVL--ESLLRS-SSLQELKLNNNGLGDRGLR---------------------LLAKGLKDLPP 137 (319)
T ss_pred ceeEEEccCCCCChhHHHHH--HHHhcc-CcccEEEeeCCccchHHHH---------------------HHHHHHHhCCC
Confidence 77777777666653221111 011111 3456666655554431111 112233444 7
Q ss_pred CCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh---cccceEEccCCcC
Q 041374 332 NLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL---TLSILLDLSGNLL 408 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~---~~l~~L~l~~n~l 408 (513)
+|+++++++|.+++..... ++..+..+++|++|++++|.+.+.....+.... +.|++|++++|.+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEA------------LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred CceEEEcCCCcCCchHHHH------------HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 8888888888887532221 122344567888999999888754333332222 3568899999888
Q ss_pred ccc----CCccccCCCCCCEEeCCCCccCccCCcccc-----CCCCCCEEeCCCCcccc----cccccccCCCCCCEEEC
Q 041374 409 TGS----IPTEVGNLKNLVQLDLSENHFSIEIPVSLS-----ACTTLEYLYMEGNSVTG----SIPLALNTLKSIKELDL 475 (513)
Q Consensus 409 ~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l 475 (513)
++. +...+..+++|++|++++|.+.+.....+. ..++|+.|++++|.+++ .+...+..+++|+.+++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 643 334566788999999999988753333322 24789999999999873 34455666789999999
Q ss_pred CCCCCCcc----cchhhhcc-cCc-eEEccCCcc
Q 041374 476 SRNNLSGH----IPEFLENL-SFN-KMNETINDF 503 (513)
Q Consensus 476 ~~n~l~~~----~p~~l~~l-~~l-~l~l~~n~l 503 (513)
++|+++.. ....+... ..+ .+|+.+|++
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999855 44445555 566 889888875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-19 Score=170.13 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=34.6
Q ss_pred EEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCccccc----CccccCCCCCCCEEEcccccCC
Q 041374 104 FVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSR----VPESLGQLRSLSFLDISENAFS 168 (513)
Q Consensus 104 ~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~ 168 (513)
.|+|..+.+++. .....+..+++|++|+++++.++.. ++..+...++|++++++++.+.
T Consensus 2 ~l~L~~~~l~~~------~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTE------RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCccccc------chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 356666666532 2233445566677777777776432 3444555666777777776654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-18 Score=141.05 Aligned_cols=162 Identities=28% Similarity=0.539 Sum_probs=139.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|.++.|++.. +|+.++.+.+|+.|++.+|+++ ++|.+++.++.|+.|+++-|++.. .|..|+.++
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie--------~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE--------ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh--------hcChhhhhchhhhheecchhhhhc-CccccCCCc
Confidence 578889999998875 6778999999999999999998 788899999999999999888865 889999999
Q ss_pred CCCEEEcccccCC-ccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFS-GMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
.|+.||+.+|.+. ...|..|+.+..|+.|++++|.++ .+|..++ .+++|+.|.++.|.+- .+|..++.+.+|++|.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 9999999999885 446888888889999999999988 8888888 8899999999999887 7888888999999999
Q ss_pred CccccccccccccccCC
Q 041374 235 LSLNHFSGQVKIDFNRL 251 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l 251 (513)
+.+|+++ .+|..++++
T Consensus 180 iqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELANL 195 (264)
T ss_pred cccceee-ecChhhhhh
Confidence 9999887 555555543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.5e-18 Score=135.53 Aligned_cols=99 Identities=31% Similarity=0.507 Sum_probs=54.6
Q ss_pred CCccccCCCCCCEEecccCcCcc-cChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccc
Q 041374 363 VPSSLGNCQNLMLLSVSNNKLTG-ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441 (513)
Q Consensus 363 ~~~~l~~~~~L~~L~ls~n~l~~-~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 441 (513)
+|..++.++.|+.||++.|++.. .+|..+|.+.++ +-|.+++|.+. .+|..++++++|+.|.+.+|.+. .+|..++
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence 44455555666666666665543 344444444443 55556666555 55555555666666666666555 4555555
Q ss_pred CCCCCCEEeCCCCccccccccccc
Q 041374 442 ACTTLEYLYMEGNSVTGSIPLALN 465 (513)
Q Consensus 442 ~l~~L~~L~L~~n~l~~~~~~~~~ 465 (513)
.+.+|++|.+.+|+++ .+|..+.
T Consensus 171 ~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHHHHHHhcccceee-ecChhhh
Confidence 5555666666666555 4444443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-14 Score=143.84 Aligned_cols=150 Identities=29% Similarity=0.512 Sum_probs=110.9
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCC----CcccceeeCCCC----CcEEEEEcCCCCCccccCccccCCCCC
Q 041374 31 HSNETDRLAYLAIKSQLQDPLGVTKSWNNSISL----CQWTGVTCGHRH----RRVTKLVLRNQSIGGFLSPYVGNLSFL 102 (513)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~~~~v~c~~~~----~~v~~L~l~~~~~~~~~~~~l~~l~~L 102 (513)
.+...|..++..+|+.+.++.. .+|... .| |.|.||.|.... ..|+.|+|+++.+.|.+|..+.++++|
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 3456788999999999876532 478643 23 279999995321 258888999888888888888888888
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCC-CCC
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI-SSL 181 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L 181 (513)
++|+|++|.+.|. +|..++.+++|+.|++++|.+++.+|..++++++|++|++++|.+++.+|..+... .++
T Consensus 445 ~~L~Ls~N~l~g~-------iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 445 QSINLSGNSIRGN-------IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred CEEECCCCcccCc-------CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 8888888888754 45567778888888888888888888888888888888888888877777666542 244
Q ss_pred cEEeCCCCc
Q 041374 182 ELIYPLENR 190 (513)
Q Consensus 182 ~~L~l~~n~ 190 (513)
..+++.+|.
T Consensus 518 ~~l~~~~N~ 526 (623)
T PLN03150 518 ASFNFTDNA 526 (623)
T ss_pred ceEEecCCc
Confidence 445555443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-11 Score=124.94 Aligned_cols=111 Identities=36% Similarity=0.439 Sum_probs=98.4
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
+..|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhhhcc-cCc-eEEccCCcccccCC
Q 041374 478 NNLSGHIPEFLENL-SFN-KMNETINDFCHHKP 508 (513)
Q Consensus 478 n~l~~~~p~~l~~l-~~l-~l~l~~n~l~~~~p 508 (513)
|+++|.+|..+..+ ..+ .+++.+|.....+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999988764 345 88999997444454
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-13 Score=127.80 Aligned_cols=170 Identities=32% Similarity=0.461 Sum_probs=86.9
Q ss_pred ccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCC
Q 041374 285 EAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVP 364 (513)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~ 364 (513)
...+++.|++.. +|..+..+.. ++.+.+..|.+. .+|..+.++..|+.++++.|++. ..|..
T Consensus 78 ~~aDlsrNR~~e-lp~~~~~f~~-Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~-------------- 139 (722)
T KOG0532|consen 78 VFADLSRNRFSE-LPEEACAFVS-LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDG-------------- 139 (722)
T ss_pred hhhhcccccccc-CchHHHHHHH-HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChh--------------
Confidence 345555555552 3333333322 444444444443 44555555555555555555555 22222
Q ss_pred ccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCC
Q 041374 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACT 444 (513)
Q Consensus 365 ~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 444 (513)
++.+ -|+.|-+++|+++ .+|+.+. ....+..||.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|+.+. .-
T Consensus 140 --lC~l-pLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L 211 (722)
T KOG0532|consen 140 --LCDL-PLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL 211 (722)
T ss_pred --hhcC-cceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC
Confidence 2221 3555555655554 5555554 2233355555555554 45555555555666666555555 4555554 23
Q ss_pred CCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 445 TLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
.|..||++.|++. .+|..|.+|..|++|-|.+|++.
T Consensus 212 pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 4555666666655 55556666666666666666655
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-12 Score=121.81 Aligned_cols=195 Identities=26% Similarity=0.374 Sum_probs=119.1
Q ss_pred CCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCC
Q 041374 251 LPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNL 330 (513)
Q Consensus 251 l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 330 (513)
+..-...+++.|++...+ .....+-.|+.+.+..|.+. .+|..++.+.. +.+++++.|++. .+|..++.+
T Consensus 74 ltdt~~aDlsrNR~~elp-------~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~-lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELP-------EEACAFVSLESLILYHNCIR-TIPEAICNLEA-LTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred ccchhhhhccccccccCc-------hHHHHHHHHHHHHHHhccce-ecchhhhhhhH-HHHhhhccchhh-cCChhhhcC
Confidence 334455666666665532 33444455666666666665 34555566555 777777777766 344444444
Q ss_pred CCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcc
Q 041374 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG 410 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~ 410 (513)
-|+.+.+++|+++ .+|..++....|..|+.+.|.+. .+|..+.+...+ +.|.+..|++.
T Consensus 144 -pLkvli~sNNkl~-----------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-r~l~vrRn~l~- 202 (722)
T KOG0532|consen 144 -PLKVLIVSNNKLT-----------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-RDLNVRRNHLE- 202 (722)
T ss_pred -cceeEEEecCccc-----------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-HHHHHhhhhhh-
Confidence 3667777777776 23334444566777777777766 666666665555 66667777666
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC---CCCEEECCCCC
Q 041374 411 SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK---SIKELDLSRNN 479 (513)
Q Consensus 411 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~ 479 (513)
.+|..++.+ .|..||++.|++. .+|.+|..|+.|++|-|.+|.+. ..|..++... -.++|+..-|+
T Consensus 203 ~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 556666644 3667777777776 67777777777777777777776 5555554322 24566666663
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-12 Score=113.08 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=123.9
Q ss_pred CCCCCCEEEccCCccccc----CcccccCCCCCCeeeCccccc---ccccccc-------ccCCCCCcEEEcCCCCCCCC
Q 041374 202 SLPNLEDLSVRQNNYTGS----LPHSLSNASNLQLLDLSLNHF---SGQVKID-------FNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~---~~~~~~~-------~~~l~~L~~L~L~~n~~~~~ 267 (513)
.+..++++++++|.+... +...+.+.++|+..++++-.. ...+|.. +...++|++++|++|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456777788887776532 233455566777776665211 1122222 23345667777777666554
Q ss_pred CCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCC
Q 041374 268 AIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPI 347 (513)
Q Consensus 268 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (513)
....+ -..++++..|++|.+.+|.+....-..++.- +..+. .+ .....-+.|+.+....|.+....
T Consensus 108 g~~~l--~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a---l~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 108 GIRGL--EELLSSCTDLEELYLNNCGLGPEAGGRLGRA---LFELA--VN-------KKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred chHHH--HHHHHhccCHHHHhhhcCCCChhHHHHHHHH---HHHHH--HH-------hccCCCcceEEEEeecccccccc
Confidence 43322 2344556666666666665542222222110 11110 00 11233456666666666665322
Q ss_pred CccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccC---hHHHHhhhcccceEEccCCcCccc----CCccccCCC
Q 041374 348 PHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGAL---PPQILGILTLSILLDLSGNLLTGS----IPTEVGNLK 420 (513)
Q Consensus 348 ~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~---p~~~~~~~~~l~~L~l~~n~l~~~----~~~~~~~l~ 420 (513)
...+ -..+..++.|+.+.++.|.+...- -..-+...+.|+.||+.+|-++.. +...++.++
T Consensus 174 a~~~------------A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 174 ATAL------------AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred HHHH------------HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 2211 112344566666666666553111 111123334446666666665422 223444556
Q ss_pred CCCEEeCCCCccCccCCccc-----cCCCCCCEEeCCCCccccc----ccccccCCCCCCEEECCCCCC
Q 041374 421 NLVQLDLSENHFSIEIPVSL-----SACTTLEYLYMEGNSVTGS----IPLALNTLKSIKELDLSRNNL 480 (513)
Q Consensus 421 ~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 480 (513)
+|+.|++++|.+......+| ...++|+.|.+.+|.++.. +..++...+.|+.|+|++|++
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 66666666666654433332 2245666666666666521 222333455666666666666
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-10 Score=113.76 Aligned_cols=135 Identities=34% Similarity=0.457 Sum_probs=66.9
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+++|+.|++++|++. ++|..... ...++.|++++|++. .+|..+.....|++|.+++|... ..+..+..+.++
T Consensus 159 ~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l 234 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL 234 (394)
T ss_pred hhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc
Confidence 344455555555555554 44433222 222355555555555 34443333444555555555433 344445555555
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
..+.+.+|++. ..+..+..++.++.|++++|.++. ++. +..+..+ .+++++|.++...|
T Consensus 235 ~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 235 SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 55555555554 224445555555555555555552 222 4555555 55555555554443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-10 Score=97.73 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=19.2
Q ss_pred CCCCCEEEccCCccccc-CcccccCCCCCCeeeCccccccccc---cccccCCCCCcEEEc
Q 041374 203 LPNLEDLSVRQNNYTGS-LPHSLSNASNLQLLDLSLNHFSGQV---KIDFNRLPNLFRLNF 259 (513)
Q Consensus 203 l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~---~~~~~~l~~L~~L~L 259 (513)
+++|++|++++|++... --..+..+++|+.|++.+|.+.... ...+..+|+|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 44555555555554421 1123445556666666666554221 112345566666653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-10 Score=113.64 Aligned_cols=197 Identities=30% Similarity=0.436 Sum_probs=124.2
Q ss_pred EEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCC-CCCEEEeecCcccccCccccCCCCCCCE
Q 041374 81 LVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLS-ALQNIDIAGNRLHSRVPESLGQLRSLSF 159 (513)
Q Consensus 81 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 159 (513)
+++..+.+... ...+..++.++.|++.+|.++ .++.....++ +|+.|++++|.+.. +|..+..+++|+.
T Consensus 98 l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~--------~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~ 167 (394)
T COG4886 98 LDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT--------DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKN 167 (394)
T ss_pred eeccccccccC-chhhhcccceeEEecCCcccc--------cCccccccchhhcccccccccchhh-hhhhhhccccccc
Confidence 44444444221 122344466777777777776 5565666664 77777777777765 4455677777777
Q ss_pred EEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccc
Q 041374 160 LDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH 239 (513)
Q Consensus 160 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 239 (513)
|++++|+++.. +......++|+.|++++|++. .+|..+. ....|+++.+++|++. ..+..+.++.++..+.+.+|+
T Consensus 168 L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 168 LDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred cccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 77777777644 333336677777777777777 6666543 3445777777777544 345566677777777777776
Q ss_pred ccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCch
Q 041374 240 FSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPL 300 (513)
Q Consensus 240 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 300 (513)
+.. .+..++.++.+++|++++|.++... .+....+++.++++++.+....+.
T Consensus 244 ~~~-~~~~~~~l~~l~~L~~s~n~i~~i~--------~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 244 LED-LPESIGNLSNLETLDLSNNQISSIS--------SLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred eee-ccchhccccccceeccccccccccc--------cccccCccCEEeccCccccccchh
Confidence 652 2455666777777777777766522 255566677777777666655443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-11 Score=109.29 Aligned_cols=248 Identities=20% Similarity=0.218 Sum_probs=135.2
Q ss_pred ccCCCCCcEEeCCCCcCcccCC----ccccCCCCCCCEEEccCC---cccccCcc-------cccCCCCCCeeeCccccc
Q 041374 175 IFNISSLELIYPLENRLEGSLP----VNIGFSLPNLEDLSVRQN---NYTGSLPH-------SLSNASNLQLLDLSLNHF 240 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp----~~~~~~l~~L~~L~l~~n---~l~~~~~~-------~l~~l~~L~~L~L~~n~~ 240 (513)
...+..++.+++++|.+...-. ..+. ..++|+..++++- +....+|+ .+..+++|+.++||+|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLA-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHh-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3455677778888877652211 1222 4456777776642 12223332 334556788888888877
Q ss_pred cccccccc----cCCCCCcEEEcCCCCCCCCCCCC-------chhhcccCCCcccccccccccccCCcCchhhhcccccc
Q 041374 241 SGQVKIDF----NRLPNLFRLNFGKNNLGTGAIGD-------LDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTI 309 (513)
Q Consensus 241 ~~~~~~~~----~~l~~L~~L~L~~n~~~~~~~~~-------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 309 (513)
....++.| .+...|++|.|.+|.+....... +.......+-+.|+.+....|++....-..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~-------- 176 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA-------- 176 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH--------
Confidence 65544443 45677888888877765433221 112223333444454444444443222111
Q ss_pred ceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH
Q 041374 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP 389 (513)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~ 389 (513)
+...+...+.|+.+.++.|.+....-.. +...+..|++|++||+.+|.++..-..
T Consensus 177 -------------~A~~~~~~~~leevr~~qN~I~~eG~~a------------l~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 177 -------------LAEAFQSHPTLEEVRLSQNGIRPEGVTA------------LAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred -------------HHHHHHhccccceEEEecccccCchhHH------------HHHHHHhCCcceeeecccchhhhHHHH
Confidence 1223445567777777777665221110 112345577888888888876532211
Q ss_pred H---HHhhhcccceEEccCCcCcccCCccc-----cCCCCCCEEeCCCCccCcc----CCccccCCCCCCEEeCCCCcc
Q 041374 390 Q---ILGILTLSILLDLSGNLLTGSIPTEV-----GNLKNLVQLDLSENHFSIE----IPVSLSACTTLEYLYMEGNSV 456 (513)
Q Consensus 390 ~---~~~~~~~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l 456 (513)
. .....+.|++|++++|.+.......+ ...|.|+.|.+.+|.++.. +..++...+.|+.|+|++|.+
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 12233345777888877764433322 2357788888888877632 223445567788888888877
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=98.62 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=13.9
Q ss_pred CCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCc
Q 041374 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLE 192 (513)
Q Consensus 130 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 192 (513)
+.+|+.|++++|.++.. +.+..+++|++|++++|.|+...+.....+++|+.|++++|++.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 34444444444444432 12444444444444444444332211123444444444444443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-11 Score=111.84 Aligned_cols=211 Identities=20% Similarity=0.208 Sum_probs=102.9
Q ss_pred CCCCCCCEEEeecCcccccCc--cccCCCCCCCEEEcccccCCcc--CcccccCCCCCcEEeCCCCcCcccCCccccCCC
Q 041374 128 GNLSALQNIDIAGNRLHSRVP--ESLGQLRSLSFLDISENAFSGM--FHSSIFNISSLELIYPLENRLEGSLPVNIGFSL 203 (513)
Q Consensus 128 ~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l 203 (513)
.+++.|+.+.+.++.+.. .+ .....+++++.|||++|-+..- +..-...+++|+.|+++.|++...........+
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345555555555555432 11 2334455666666666544322 112233556666666666655533333333345
Q ss_pred CCCCEEEccCCccccc-CcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCc
Q 041374 204 PNLEDLSVRQNNYTGS-LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCS 282 (513)
Q Consensus 204 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~ 282 (513)
++|+.|.++.|.++.. +...+..+|+|+.|++.+|............+..|+.|+|++|.+-.. +.......++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-----~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-----DQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-----cccccccccc
Confidence 5666666666666532 122234566666666666642222233334455666666666665432 2224455566
Q ss_pred ccccccccccccCCcCchhh------hccccccceEEeccccceec-CCccccCCCCCCEEeccCCcCcc
Q 041374 283 KLEAFGLDTNIFGGVLPLSI------ANLSSTIILFTMGLNQIYGT-IPPEVKNLVNLNGFGLEYNQLTG 345 (513)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~------~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 345 (513)
.|+.|+++.+.+...--... ...+ .+++|++..|++... .-..+..+++|+.+.+..|.+..
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccc-cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 66666666665543211111 1112 255555555554311 11123344556666666666653
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-10 Score=101.66 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=116.5
Q ss_pred ccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccc-----------------------cC
Q 041374 91 FLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHS-----------------------RV 147 (513)
Q Consensus 91 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~-----------------------~~ 147 (513)
.++-.+.-+++|+.+.++.+.-. .+.+....-+.|+++.+.+..++. ..
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~--------~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~ 276 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTE--------NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSA 276 (490)
T ss_pred ccccchHHhhhhheeeeeccchh--------heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCce
Confidence 34555667788888888877432 222222223556666655443321 11
Q ss_pred ccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCC
Q 041374 148 PESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNA 227 (513)
Q Consensus 148 p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 227 (513)
...+...+-|+++|+|+|.|+ .+.++..-++.++.|+++.|++. .+.. .. .+++|+.|++++|.++ .+..+-..+
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred EEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhh
Confidence 111222345777788887776 33455566677778888877776 3333 33 5777888888888776 444444566
Q ss_pred CCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 228 SNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 228 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
-++++|.+++|.+.. -..++++-+|..|++++|++.. ++-...++++|.|+.+.+.+|.+.+..
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~-----ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEE-----LDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhh-----HHHhcccccccHHHHHhhcCCCccccc
Confidence 777788888877752 2346677778888888887765 234466778888888888887776543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-11 Score=110.07 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=122.7
Q ss_pred cCCCCCCCEEEcccccCCccCc-ccccCCCCCcEEeCCCCcCcccCC-ccccCCCCCCCEEEccCCcccccCccc-ccCC
Q 041374 151 LGQLRSLSFLDISENAFSGMFH-SSIFNISSLELIYPLENRLEGSLP-VNIGFSLPNLEDLSVRQNNYTGSLPHS-LSNA 227 (513)
Q Consensus 151 l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~lp-~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l 227 (513)
=+++++|+...|.++.+..... +....+++++.|+++.|-+..-.+ ..+...+++|+.|+++.|++....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3467889999999888764332 466788999999999986652111 234457899999999999887332221 2356
Q ss_pred CCCCeeeCcccccccc-ccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCc-hhhhcc
Q 041374 228 SNLQLLDLSLNHFSGQ-VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP-LSIANL 305 (513)
Q Consensus 228 ~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~ 305 (513)
++|+.|.++.|.++.. +......+|+|+.|++..|...... .........|++|++++|.+-.... ...+.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~------~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK------ATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee------cchhhhhhHHhhccccCCcccccccccccccc
Confidence 7889999999988732 2223456799999999988522211 1223445678999999988764432 233444
Q ss_pred ccccceEEeccccceec-CCcc-----ccCCCCCCEEeccCCcCc
Q 041374 306 SSTIILFTMGLNQIYGT-IPPE-----VKNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 306 ~~~l~~l~l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~n~~~ 344 (513)
+. +..++++.+.+... .|+. ...+++|++|++..|++.
T Consensus 271 ~~-L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 271 PG-LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cc-hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 44 77777777766543 2222 345677888888888775
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-10 Score=118.86 Aligned_cols=209 Identities=18% Similarity=0.197 Sum_probs=103.1
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEccccc--CCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA--FSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLED 208 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~ 208 (513)
...+...+.+|.+.. ++... ..++|++|-+.+|. +.....+.|..++.|++|++++|.-.+.+|..++ .+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhc
Confidence 444555555544433 22221 22356666555554 3333334455566666666665554446666666 5666666
Q ss_pred EEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccc
Q 041374 209 LSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFG 288 (513)
Q Consensus 209 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~ 288 (513)
|+++++.+. .+|..+.++.+|.+|++..+......+.....+++|++|.+....... +......+..+.+|+.+.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~----~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN----DKLLLKELENLEHLENLS 674 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc----chhhHHhhhcccchhhhe
Confidence 666666666 566666666666666666655444444445556666666664443111 111223334444444444
Q ss_pred ccccccCC-cCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCC
Q 041374 289 LDTNIFGG-VLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP 348 (513)
Q Consensus 289 l~~n~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 348 (513)
........ .-......+.+..+.+.+..+.. ...+..+..+.+|+.|.+.++.......
T Consensus 675 ~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 675 ITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred eecchhHhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhc
Confidence 43222100 00011111111122222222111 2344556778888999998888874433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-09 Score=115.16 Aligned_cols=128 Identities=23% Similarity=0.281 Sum_probs=76.8
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc--ccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR--LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
...|.+.+.+|.+. .++... .++.|++|-+.+|. +.......|..++.|+.||+++|.--+.+|..+++
T Consensus 523 ~~~rr~s~~~~~~~--------~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE--------HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchh--------hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 44555555555543 223222 22356666666664 44434444666677777777766655666777777
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccc
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLN 238 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 238 (513)
+-+|++|+++++.+. .+|..+. .+++|.+|++..+.....+|.....+.+|++|.+...
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 777777777777766 6676666 6667777777766654444555555677777766554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-10 Score=99.34 Aligned_cols=130 Identities=25% Similarity=0.208 Sum_probs=84.4
Q ss_pred CCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 370 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
...|+.+|+++|.++ .+.+..- ..+.++.|++++|.+.. ...+..+++|+.||+++|.++ .+..+-..+-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 356777888888776 5544442 33344778888887762 223667778888888888776 444444556677777
Q ss_pred eCCCCcccccccccccCCCCCCEEECCCCCCCcccc-hhhhcccCc-eEEccCCccccc
Q 041374 450 YMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP-EFLENLSFN-KMNETINDFCHH 506 (513)
Q Consensus 450 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~l-~l~l~~n~l~~~ 506 (513)
.|++|.+. ...++..+.+|..||+++|+|..... ..+++++-| .+.|.+|++.+.
T Consensus 358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88877774 23456667777778888887753222 145666666 777777777653
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-09 Score=75.37 Aligned_cols=61 Identities=41% Similarity=0.491 Sum_probs=34.6
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCC
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNL 480 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 480 (513)
|+|++|++++|++....+..|.++++|++|++++|+++...+..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3455566666655533334555566666666666666545555556666666666665553
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-09 Score=73.27 Aligned_cols=39 Identities=36% Similarity=0.675 Sum_probs=17.5
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccc
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISEN 165 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n 165 (513)
|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444444444433344444444444444444
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-08 Score=100.38 Aligned_cols=83 Identities=30% Similarity=0.291 Sum_probs=41.9
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccc---cccc-ccCCCCCCEEE
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS---IPLA-LNTLKSIKELD 474 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~ 474 (513)
+.+++++|++. ..+..+..+..+..|++.+|.+.. -..+...+.+..+....|.+... .... ....+.++.+.
T Consensus 235 ~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 235 RELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 55666666665 222444555666666666665542 12233445555555555554411 1111 33445566666
Q ss_pred CCCCCCCccc
Q 041374 475 LSRNNLSGHI 484 (513)
Q Consensus 475 l~~n~l~~~~ 484 (513)
+..|.+....
T Consensus 312 ~~~~~~~~~~ 321 (414)
T KOG0531|consen 312 LELNPIRKIS 321 (414)
T ss_pred cccCcccccc
Confidence 6666655433
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-08 Score=99.82 Aligned_cols=85 Identities=26% Similarity=0.348 Sum_probs=37.9
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+..+++|+.+++.+|.|. .+...+..+++|++|++++|.++... .+..++.|+.|++++|.|+.. ..+
T Consensus 91 l~~~~~l~~l~l~~n~i~--------~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE--------KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGL 158 (414)
T ss_pred cccccceeeeeccccchh--------hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCC
Confidence 344445555555555444 22222344455555555555554431 233444455555555554422 222
Q ss_pred cCCCCCcEEeCCCCcCc
Q 041374 176 FNISSLELIYPLENRLE 192 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~ 192 (513)
..+..|+.+++++|++.
T Consensus 159 ~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccchhhhcccCCcchhh
Confidence 23444444455554444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-08 Score=79.86 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=102.1
Q ss_pred CCCEEecccCcCcccChHHHHhhhcc--cceEEccCCcCcccCCcccc-CCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTL--SILLDLSGNLLTGSIPTEVG-NLKNLVQLDLSENHFSIEIPVSLSACTTLEY 448 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~--l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 448 (513)
.+..++|++|.+. .++......... +..+++++|.+. .+|+.+. .++.++.|++++|.+. .+|+.+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4567888888875 566555443333 356799999998 5555544 5678999999999998 78988999999999
Q ss_pred EeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 449 LYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 449 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
|+++.|.+. ..|+.+..+.++-.||..+|.+. .+|..+-.-... .+++.++++.|.-|..+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 999999998 66777777899999999999887 555543222222 77778888988887655
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-08 Score=88.06 Aligned_cols=216 Identities=21% Similarity=0.236 Sum_probs=141.1
Q ss_pred CcEEEEEcCCCCCccc----cCccccCCCCCCEEeCCCCCCccc----CCCCCCCCCcccCCCCCCCEEEeecCcccccC
Q 041374 76 RRVTKLVLRNQSIGGF----LSPYVGNLSFLRFVNLASNNLHGE----IPYEHGQLPPSIGNLSALQNIDIAGNRLHSRV 147 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~ 147 (513)
..++.++||+|.+... +...+.+-.+|+..++++-. +|. ++..+.-+.+++-+|++|+..++|+|.+....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5689999999998754 45566777889998887653 332 22222223445678999999999999987665
Q ss_pred ccc----cCCCCCCCEEEcccccCCccCccccc-------------CCCCCcEEeCCCCcCcccCCcc----ccCCCCCC
Q 041374 148 PES----LGQLRSLSFLDISENAFSGMFHSSIF-------------NISSLELIYPLENRLEGSLPVN----IGFSLPNL 206 (513)
Q Consensus 148 p~~----l~~l~~L~~L~Ls~n~i~~~~~~~~~-------------~l~~L~~L~l~~n~l~~~lp~~----~~~~l~~L 206 (513)
|.. +++-+.|.+|.+++|.+.......++ +-+.|++..+..|++. ..|.. ......+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 543 55678899999999987644333222 4578888888888886 33321 11123578
Q ss_pred CEEEccCCcccccCc-----ccccCCCCCCeeeCcccccccc----ccccccCCCCCcEEEcCCCCCCCCCCCCchhhcc
Q 041374 207 EDLSVRQNNYTGSLP-----HSLSNASNLQLLDLSLNHFSGQ----VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 277 (513)
+++.+..|.|..... ..+..+.+|+.||+++|.++-. ....+..++.|+.|.+.+|-++..+...+ ...
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v--~~~ 265 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV--LRR 265 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH--HHH
Confidence 888888887763211 1234677889999999887633 33445667778888888887776543221 122
Q ss_pred c--CCCcccccccccccccC
Q 041374 278 L--TNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 278 l--~~~~~L~~L~l~~n~~~ 295 (513)
+ ...++|..|...+|...
T Consensus 266 f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhhcCCCccccccchhhhc
Confidence 2 23355566655555443
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-07 Score=57.90 Aligned_cols=39 Identities=54% Similarity=0.983 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCCC--CCCCcccceeeC
Q 041374 34 ETDRLAYLAIKSQLQ-DPLGVTKSWNNS--ISLCQWTGVTCG 72 (513)
Q Consensus 34 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~~~~v~c~ 72 (513)
+.|+++|++||.++. +|...+.+|... .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999999 677899999887 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.4e-08 Score=85.78 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCCCCCEEEccCCcccc--cCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccC
Q 041374 202 SLPNLEDLSVRQNNYTG--SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLT 279 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~ 279 (513)
....+++++|.+|.++. .+...+.++|.|++|+++.|.+...+...-....+|+.|-|.+..+.-.. .-..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~-----~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQ-----STSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhh-----hhhhhh
Confidence 34556666666666652 22334456777777777777665433322234556777777666554321 113345
Q ss_pred CCcccccccccccc
Q 041374 280 NCSKLEAFGLDTNI 293 (513)
Q Consensus 280 ~~~~L~~L~l~~n~ 293 (513)
.+|.+++++++.|.
T Consensus 144 ~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 144 DLPKVTELHMSDNS 157 (418)
T ss_pred cchhhhhhhhccch
Confidence 55666666666653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-08 Score=91.17 Aligned_cols=181 Identities=17% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEccccc-CCccC-cccccCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA-FSGMF-HSSIFNI 178 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l 178 (513)
.|++|||+...|+.. .+...++.|.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++... .-.+.++
T Consensus 186 Rlq~lDLS~s~it~s------tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS------TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHH------HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 478888888777643 333346677888888888888887777778888888888888764 33221 1234577
Q ss_pred CCCcEEeCCCCcCcccCCc-cccCCCCCCCEEEccCCccc---ccCcccccCCCCCCeeeCcccc-ccccccccccCCCC
Q 041374 179 SSLELIYPLENRLEGSLPV-NIGFSLPNLEDLSVRQNNYT---GSLPHSLSNASNLQLLDLSLNH-FSGQVKIDFNRLPN 253 (513)
Q Consensus 179 ~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~ 253 (513)
+.|..|++++|.+....-. .+..--++|..|+++++.-. ..+..-...+++|.+|||+++. +.......|.+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 8888888888876533211 11112256777888776522 1111223567888888888764 34444556777888
Q ss_pred CcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc
Q 041374 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292 (513)
Q Consensus 254 L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n 292 (513)
|++|.++.|..-. + ...-.+...+.|..|++.++
T Consensus 340 L~~lSlsRCY~i~--p---~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDII--P---ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCCC--h---HHeeeeccCcceEEEEeccc
Confidence 8888888775322 1 22344566677777776654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.5e-08 Score=96.58 Aligned_cols=169 Identities=31% Similarity=0.338 Sum_probs=114.5
Q ss_pred CccccCCCCCCEEeccCCcCccCC--CccccCCCCeE-----------E---ec---cCCccccCCCCCCEEecccCcCc
Q 041374 324 PPEVKNLVNLNGFGLEYNQLTGPI--PHAIGELRNLQ-----------L---RG---NVPSSLGNCQNLMLLSVSNNKLT 384 (513)
Q Consensus 324 ~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~-----------l---~~---~~~~~l~~~~~L~~L~ls~n~l~ 384 (513)
|-.+..+..|++|.+.++++.... .+.-..+++|- + .| +-|.| ..|...+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W----n~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW----NKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh----hhHhhhhcchhhHH
Confidence 445566778888888888776310 00111222221 0 01 11222 46778888888875
Q ss_pred ccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCc-cccCCCCCCEEeCCCCccccccccc
Q 041374 385 GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV-SLSACTTLEYLYMEGNSVTGSIPLA 463 (513)
Q Consensus 385 ~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 463 (513)
.+.. ..+..+.++.|++++|+++.. +.+.+++.|++|||+.|.+. .+|. ...++. |+.|.+++|.++. ..+
T Consensus 178 -~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~g 249 (1096)
T KOG1859|consen 178 -LMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRG 249 (1096)
T ss_pred -hHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhh
Confidence 3333 335556669999999999743 37889999999999999987 5554 233444 9999999999873 356
Q ss_pred ccCCCCCCEEECCCCCCCcccc-hhhhcccCc-eEEccCCccc
Q 041374 464 LNTLKSIKELDLSRNNLSGHIP-EFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 464 ~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~l-~l~l~~n~l~ 504 (513)
+.++.+|+.||++.|-|.+.-. ..+..|.+| .++|.+|++.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8889999999999998864322 245667777 9999999875
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.1e-08 Score=85.54 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=83.3
Q ss_pred CCEEEcccccCCccCcccccCC--CCCcEEeCCCCcCccc-CCccccCCCCCCCEEEccCCccccc-CcccccCCCCCCe
Q 041374 157 LSFLDISENAFSGMFHSSIFNI--SSLELIYPLENRLEGS-LPVNIGFSLPNLEDLSVRQNNYTGS-LPHSLSNASNLQL 232 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~-lp~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~ 232 (513)
-+.+|+.+-.|. |..+..+ ....++.+....+... +.+.+...-..|+++||++..++.. +-..+.++.+|+.
T Consensus 138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 356777665554 3333333 2344444443333222 1121110123589999999887732 2334678899999
Q ss_pred eeCccccccccccccccCCCCCcEEEcCCCC-CCCCCCCCchhhcccCCCcccccccccccccC
Q 041374 233 LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNN-LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 233 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 295 (513)
|.+.|+++.+.+...+.+-.+|+.|+++.+. ++. ...-.-+.+|+.|.+|+++++...
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccch-----hHHHHHHHhhhhHhhcCchHhhcc
Confidence 9999999998888888888999999998874 222 222344678888999999888654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-07 Score=81.52 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=19.3
Q ss_pred CCCCCCeeeCccccccccc-cccccCCCCCcEEEcCCCCCCC
Q 041374 226 NASNLQLLDLSLNHFSGQV-KIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 226 ~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
.++.+..|+|+.|++.... -+.+..+++|..|.+..+.+..
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3444445555555554221 1234455555555555555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.4e-08 Score=95.01 Aligned_cols=127 Identities=28% Similarity=0.276 Sum_probs=85.4
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
.|.+.+.++|.+.. ...++.-++.|+.|+|++|+++.. +.+..++.|+.|+++.|.+. .+|..-- .-.+|+.|.+
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~-~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSM-VGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccch-hhhhheeeee
Confidence 45556666666653 445566667788888888887755 36777888888888888887 6664322 2234888888
Q ss_pred cCCcccccCcccccCCCCCCeeeCcccccccccc-ccccCCCCCcEEEcCCCCCC
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK-IDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~ 265 (513)
++|.++. + ..+.++.+|+.||+++|-+.+... ..+..+..|+.|+|.+|.+-
T Consensus 240 rnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888772 2 246778888888888887764322 22455667778888887653
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.8e-06 Score=52.01 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=19.1
Q ss_pred CCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 445 TLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+|++|++++|+++ .+|..+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555556666666655555
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.4e-06 Score=51.86 Aligned_cols=36 Identities=31% Similarity=0.612 Sum_probs=20.3
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCC
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFS 168 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~ 168 (513)
+|++|++++|+++. +|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 55666666666654 4444666666666666666655
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.1e-07 Score=70.73 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=84.1
Q ss_pred CCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 370 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
...|+..++++|.+. .+|+.+...++.++.+++++|.++ .+|..+..++.|+.|+++.|++. ..|.-+..+.++-.|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 356777788888887 777777777766688888888888 67777888888888888888887 667766668888888
Q ss_pred eCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcc
Q 041374 450 YMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491 (513)
Q Consensus 450 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 491 (513)
+..+|.+. .+|..+-.-...-..++.++++.+.-|..++.+
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 88888776 444443222333344556777776555554443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-06 Score=75.20 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCCCCeeeCcccccccccccc----ccCCCCCcEEEcCCCCCCCCCCCCc----hhhcccCCCcccccccccccccCCcC
Q 041374 227 ASNLQLLDLSLNHFSGQVKID----FNRLPNLFRLNFGKNNLGTGAIGDL----DFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 227 l~~L~~L~L~~n~~~~~~~~~----~~~l~~L~~L~L~~n~~~~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
+..+..++|+||.+....... +.+-.+|+..++++-.......... -..+++-+|++|+..+++.|.|....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455556666666554433332 2334555555554432211111100 12345667788888888888877777
Q ss_pred chhhhc
Q 041374 299 PLSIAN 304 (513)
Q Consensus 299 ~~~~~~ 304 (513)
|..++.
T Consensus 109 ~e~L~d 114 (388)
T COG5238 109 PEELGD 114 (388)
T ss_pred chHHHH
Confidence 665544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4e-05 Score=64.91 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=55.1
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.+...+|+++|.+... +.|..++.|.+|.+++|.|+.+.|.--. .+++|..|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~-------------------------~~p~l~~L~ 94 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDT-------------------------FLPNLKTLI 94 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhh-------------------------hccccceEE
Confidence 3556677777776542 3466777778888888777754443222 334444444
Q ss_pred ccCCcccccC-cccccCCCCCCeeeCccccccccc---cccccCCCCCcEEEcCCC
Q 041374 211 VRQNNYTGSL-PHSLSNASNLQLLDLSLNHFSGQV---KIDFNRLPNLFRLNFGKN 262 (513)
Q Consensus 211 l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~---~~~~~~l~~L~~L~L~~n 262 (513)
+.+|++.... -..+..+++|++|.+-+|.++..- -..+..+|+|+.||+++-
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 4444443100 012344555555555555554221 122445566666665443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.3e-05 Score=71.17 Aligned_cols=120 Identities=16% Similarity=0.236 Sum_probs=72.7
Q ss_pred cccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccC
Q 041374 326 EVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSG 405 (513)
Q Consensus 326 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~ 405 (513)
.+..+.++++|++++|.++ .+|. -.++|++|.+++|.-...+|..+ +..|++|++++
T Consensus 47 r~~~~~~l~~L~Is~c~L~-----------------sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~ 103 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-----------------SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCH 103 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-----------------ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccC
Confidence 4667899999999998666 3331 12579999999875444666533 45669999999
Q ss_pred C-cCcccCCccccCCCCCCEEeCCCCccC--ccCCccccCC------------------CCCCEEeCCCCcccccccccc
Q 041374 406 N-LLTGSIPTEVGNLKNLVQLDLSENHFS--IEIPVSLSAC------------------TTLEYLYMEGNSVTGSIPLAL 464 (513)
Q Consensus 406 n-~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l------------------~~L~~L~L~~n~l~~~~~~~~ 464 (513)
| .+. .+|. .|+.|++..+... +.+|..+..+ ++|++|++++|... ..|..+
T Consensus 104 Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L 175 (426)
T PRK15386 104 CPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL 175 (426)
T ss_pred ccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc
Confidence 8 454 4553 4666666655431 2344433221 35666666666654 334333
Q ss_pred cCCCCCCEEECCCC
Q 041374 465 NTLKSIKELDLSRN 478 (513)
Q Consensus 465 ~~l~~L~~L~l~~n 478 (513)
. .+|+.|+++.|
T Consensus 176 P--~SLk~L~ls~n 187 (426)
T PRK15386 176 P--ESLQSITLHIE 187 (426)
T ss_pred c--ccCcEEEeccc
Confidence 2 36666666655
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.9e-05 Score=70.96 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=69.2
Q ss_pred cceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccc-cCCCCeEEeccCCccc-cCCCCCCEEecccCcCccc
Q 041374 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAI-GELRNLQLRGNVPSSL-GNCQNLMLLSVSNNKLTGA 386 (513)
Q Consensus 309 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~l~~~~~~~l-~~~~~L~~L~ls~n~l~~~ 386 (513)
+..|+++.|.+. .+| .-..+|++|.+++|.-...+|..+ .+|+.|.++++- .+ .-.++|+.|+++.+... .
T Consensus 54 l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs--~L~sLP~sLe~L~L~~n~~~-~ 126 (426)
T PRK15386 54 SGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP--EISGLPESVRSLEIKGSATD-S 126 (426)
T ss_pred CCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc--cccccccccceEEeCCCCCc-c
Confidence 889999988543 444 333469999998865443445322 234444443321 11 11233444444333322 1
Q ss_pred ChHHHHhhhcccceEEccCCc-Ccc-cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCc
Q 041374 387 LPPQILGILTLSILLDLSGNL-LTG-SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNS 455 (513)
Q Consensus 387 ~p~~~~~~~~~l~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 455 (513)
+...++.|+.|.+.+++ ... ..+.. -.++|++|++++|... ..|..+. .+|+.|+++.+.
T Consensus 127 ----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 127 ----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 22344444555554322 100 01100 1157999999999866 4555544 589999998774
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=1.3e-05 Score=83.61 Aligned_cols=160 Identities=24% Similarity=0.271 Sum_probs=68.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCC---C--CCCCccc---CCCCCCCEEEeecCccc-cc
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYE---H--GQLPPSI---GNLSALQNIDIAGNRLH-SR 146 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~--~~l~~~~---~~l~~L~~L~l~~n~l~-~~ 146 (513)
-.++.+++.+..........+.+.. |+.+.|.+-......-.. + ..+-+.+ ..-.+|++||+++.... ..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4577777776665544333344444 777776654332211000 0 0000000 01135666666654332 11
Q ss_pred CccccC-CCCCCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc-cCccc
Q 041374 147 VPESLG-QLRSLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHS 223 (513)
Q Consensus 147 ~p~~l~-~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 223 (513)
.|..++ .+|.|+.|.+++-.+... .-....++++|..||+++++++ .+ ..+. .+++|+.|.+.+=.+.. ..-..
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHHHHhccCCCCCchhhHHH
Confidence 222222 346666666665443211 1122234555555555555554 22 2233 45555555554443331 11112
Q ss_pred ccCCCCCCeeeCcccc
Q 041374 224 LSNASNLQLLDLSLNH 239 (513)
Q Consensus 224 l~~l~~L~~L~L~~n~ 239 (513)
+.++++|+.||+|...
T Consensus 216 LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDK 231 (699)
T ss_pred HhcccCCCeeeccccc
Confidence 3445555555555433
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.7e-05 Score=82.74 Aligned_cols=141 Identities=20% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcccc-CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcC
Q 041374 330 LVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG-NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLL 408 (513)
Q Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l 408 (513)
-.+|++|+++|..... ..+|..++ .+|+|++|.+++-.+..+--..++...+.|..||+|+.++
T Consensus 121 r~nL~~LdI~G~~~~s---------------~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS---------------NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HHhhhhcCccccchhh---------------ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 3578888888843321 11222232 3688999999887765444455667777789999999888
Q ss_pred cccCCccccCCCCCCEEeCCCCccCc-cCCccccCCCCCCEEeCCCCccccc------ccccccCCCCCCEEECCCCCCC
Q 041374 409 TGSIPTEVGNLKNLVQLDLSENHFSI-EIPVSLSACTTLEYLYMEGNSVTGS------IPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+.. ..++++++|+.|.+.+-.+.. ..-..+..+++|+.||+|..+.... -.+.-..+|+|+.||.+++.++
T Consensus 186 ~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 186 SNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 743 567888999999888877763 2224567889999999998765422 1223345889999999999887
Q ss_pred cccchh
Q 041374 482 GHIPEF 487 (513)
Q Consensus 482 ~~~p~~ 487 (513)
+.+-+.
T Consensus 264 ~~~le~ 269 (699)
T KOG3665|consen 264 EEILEE 269 (699)
T ss_pred HHHHHH
Confidence 665554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00051 Score=58.40 Aligned_cols=124 Identities=19% Similarity=0.079 Sum_probs=83.7
Q ss_pred CCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
=+.+++.+.++. . -+.+.........+|+++|.+-. ...+..++.|.+|.+.+|+|+...|.--..+++|+.|.+.
T Consensus 21 e~e~~LR~lkip-~-ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-V-IENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-c-hhhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345667766653 1 12233333344778999998852 2356678899999999999996666555567889999999
Q ss_pred CCccccc-ccccccCCCCCCEEECCCCCCCcccc---hhhhcccCc-eEEccC
Q 041374 453 GNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIP---EFLENLSFN-KMNETI 500 (513)
Q Consensus 453 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~l-~l~l~~ 500 (513)
+|.|... .-..+..+++|+.|.+-+|+++.--- ..+..++++ .+|...
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9987632 12346678899999999998863211 134567777 777654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=54.06 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=30.4
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
.|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++.+++.+.+.+ .+. .++...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344555555555542 343333344555555555555543 4433333444444444444432 222 233333323444
Q ss_pred CCEEEcc
Q 041374 206 LEDLSVR 212 (513)
Q Consensus 206 L~~L~l~ 212 (513)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 5555543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00046 Score=61.23 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccc--cCCccCcccccCCCCCcEEeCCCCcC
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISEN--AFSGMFHSSIFNISSLELIYPLENRL 191 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~l~~n~l 191 (513)
..|+.|.+.+..++.. ..|..+++|++|.++.| ++.+..+-....+++|+++++++|++
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3444444444444432 23455566666666666 33333222222334444444444444
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=4e-05 Score=71.97 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=44.9
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCccc-ccCcccc-CCCCCCCEEEccccc-CCccCcccc-
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLH-SRVPESL-GQLRSLSFLDISENA-FSGMFHSSI- 175 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~-~~~p~~l-~~l~~L~~L~Ls~n~-i~~~~~~~~- 175 (513)
..|+.|.+.++.-.+.- .+-..-..+++++.|++.++... ...-.++ ..+++|+++++..|. ++...-..+
T Consensus 138 g~lk~LSlrG~r~v~~s-----slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS-----SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcc-----hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 35777788777544321 22233456788888887777532 2111122 246778888887743 343322211
Q ss_pred cCCCCCcEEeCCCC
Q 041374 176 FNISSLELIYPLEN 189 (513)
Q Consensus 176 ~~l~~L~~L~l~~n 189 (513)
..+++|++++++++
T Consensus 213 ~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWC 226 (483)
T ss_pred HhhhhHHHhhhccC
Confidence 23455555555544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0041 Score=50.57 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=53.8
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+++|+.+.+.. .+. .++...+.....++.+.+.++ +.......+..+++++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 45566777777664 333 455555555544577777664 4434444566666777777765 3332334456667777
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
+.+++..+ +.......|.++ .|+.+.+.+ .+.......|.+.+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT 126 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence 77777654 443444556665 777777665 33333344555444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=8.6e-05 Score=66.08 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=59.6
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccccccc-ccccCCCCCcE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK-IDFNRLPNLFR 256 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~ 256 (513)
+.+.+.|++.++.+. .+ .+...|+.|+.|.|+-|+++.. +.+..+++|++|+|..|.|..... ..+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 344556666666655 22 3444688888888888888733 246778888888888888764321 23567888888
Q ss_pred EEcCCCCCCCCCCCC
Q 041374 257 LNFGKNNLGTGAIGD 271 (513)
Q Consensus 257 L~L~~n~~~~~~~~~ 271 (513)
|+|..|...+.....
T Consensus 93 LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQN 107 (388)
T ss_pred HhhccCCcccccchh
Confidence 888888776655443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00018 Score=67.80 Aligned_cols=270 Identities=17% Similarity=0.105 Sum_probs=122.8
Q ss_pred CCCCeeeCcccccccccc--ccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc-ccCCcCchhhhc
Q 041374 228 SNLQLLDLSLNHFSGQVK--IDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN-IFGGVLPLSIAN 304 (513)
Q Consensus 228 ~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~ 304 (513)
..|+.|.+.|+.-.+.-+ ..-...|++++|.+.++....+ -.....-..|+.++.+++..+ .++......+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd----~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD----SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH----HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 347777777765432222 2234678888888888753221 112233356788888888773 333333333333
Q ss_pred cccccceEEecccc-ceec-CCccccCCCCCCEEeccCCcCcc-CC----CccccCCCCeE------EeccCCcc-ccCC
Q 041374 305 LSSTIILFTMGLNQ-IYGT-IPPEVKNLVNLNGFGLEYNQLTG-PI----PHAIGELRNLQ------LRGNVPSS-LGNC 370 (513)
Q Consensus 305 ~~~~l~~l~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~n~~~~-~~----~~~~~~l~~L~------l~~~~~~~-l~~~ 370 (513)
--..+++++++++. +.+. +-.....+..++.+...||.=.+ .. ......+.+++ ++..-... -..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 22336666666653 2221 11112233334444444331110 00 00000111111 11100000 1235
Q ss_pred CCCCEEecccCcC-cccChHHHHhhhcccceEEccCCc-CcccCCccc-cCCCCCCEEeCCCCccCc--cCCccccCCCC
Q 041374 371 QNLMLLSVSNNKL-TGALPPQILGILTLSILLDLSGNL-LTGSIPTEV-GNLKNLVQLDLSENHFSI--EIPVSLSACTT 445 (513)
Q Consensus 371 ~~L~~L~ls~n~l-~~~~p~~~~~~~~~l~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~ 445 (513)
..|++|+.+++.- .+..-..+......|+.+-++.++ +++.....+ .+++.|+.+++.++.... .+..--.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 5666666666533 222333444445555666666664 332221122 245666666666664321 11122245667
Q ss_pred CCEEeCCCCcccccc-----cccccCCCCCCEEECCCCCC-CcccchhhhcccCc-eEEccCC
Q 041374 446 LEYLYMEGNSVTGSI-----PLALNTLKSIKELDLSRNNL-SGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 446 L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l-~~~~p~~l~~l~~l-~l~l~~n 501 (513)
|+++.+++|...... ...-+.+..|..+.+++++. +...-+.+..+..| .+++-.+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 777777766543111 12223455667777777663 33333334444445 5555444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0017 Score=57.76 Aligned_cols=82 Identities=29% Similarity=0.345 Sum_probs=47.9
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCC--ccCccCCccccCCCCCCEEeCCCCcccc-cccccccCCCCCCEEEC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSEN--HFSIEIPVSLSACTTLEYLYMEGNSVTG-SIPLALNTLKSIKELDL 475 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l 475 (513)
+.+++.+..++. ...+..+|+|++|+++.| .+.+.++.-...+++|+++++++|++.. .--..+..+.+|..||+
T Consensus 46 e~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 46 ELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 445555555541 123445667777777777 5554455444555777777777777762 11122344566777777
Q ss_pred CCCCCCc
Q 041374 476 SRNNLSG 482 (513)
Q Consensus 476 ~~n~l~~ 482 (513)
.+|..++
T Consensus 124 ~n~~~~~ 130 (260)
T KOG2739|consen 124 FNCSVTN 130 (260)
T ss_pred ccCCccc
Confidence 7776553
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.00033 Score=62.45 Aligned_cols=86 Identities=27% Similarity=0.246 Sum_probs=65.7
Q ss_pred ccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccc-cccccCCCCCCEEEC
Q 041374 397 LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI-PLALNTLKSIKELDL 475 (513)
Q Consensus 397 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l 475 (513)
..++|++.+|.++++ .....|+.|+.|.|+-|.++. ...+..|++|++|+|..|.|.... -..+.++++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 347889999988743 234578999999999999873 234678899999999999887432 234678899999999
Q ss_pred CCCCCCcccch
Q 041374 476 SRNNLSGHIPE 486 (513)
Q Consensus 476 ~~n~l~~~~p~ 486 (513)
..|+=+|.-+.
T Consensus 96 ~ENPCc~~ag~ 106 (388)
T KOG2123|consen 96 DENPCCGEAGQ 106 (388)
T ss_pred ccCCcccccch
Confidence 99987766654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0038 Score=32.87 Aligned_cols=12 Identities=58% Similarity=0.786 Sum_probs=5.3
Q ss_pred CCEEECCCCCCC
Q 041374 470 IKELDLSRNNLS 481 (513)
Q Consensus 470 L~~L~l~~n~l~ 481 (513)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.0066 Score=31.93 Aligned_cols=19 Identities=53% Similarity=0.892 Sum_probs=9.7
Q ss_pred CCEEeCCCCccccccccccc
Q 041374 446 LEYLYMEGNSVTGSIPLALN 465 (513)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~ 465 (513)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.0053 Score=62.69 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=39.6
Q ss_pred cCCCCCCCEEEeecC-cccccC----ccccCCCCCCCEEEccccc-CCccCcccccC-CCCCcEEeCCCCc-CcccCCcc
Q 041374 127 IGNLSALQNIDIAGN-RLHSRV----PESLGQLRSLSFLDISENA-FSGMFHSSIFN-ISSLELIYPLENR-LEGSLPVN 198 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n-~l~~~~----p~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~-l~~L~~L~l~~n~-l~~~lp~~ 198 (513)
...+++|+.|+++++ ...... ......+++|+.|+++++. +++..-..+.. +++|+.|.+..+. +++.--..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345566666666552 111111 1122334556666666655 44333333322 4555555544444 33222222
Q ss_pred ccCCCCCCCEEEccCCc
Q 041374 199 IGFSLPNLEDLSVRQNN 215 (513)
Q Consensus 199 ~~~~l~~L~~L~l~~n~ 215 (513)
+...++.|++|++++|.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 33344555555555554
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.00044 Score=69.14 Aligned_cols=126 Identities=23% Similarity=0.175 Sum_probs=62.9
Q ss_pred ccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH----HHHhhhcccce
Q 041374 325 PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP----QILGILTLSIL 400 (513)
Q Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~----~~~~~~~~l~~ 400 (513)
..+.....++.++++.|.+.......++ -.++..+....+++.|.+++|.++..... .+......+..
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~--------~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLS--------QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE 237 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHh--------hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence 3444466677777777766411100000 00111222356777777877776522211 11222332345
Q ss_pred EEccCCcCcccC----CccccCC-CCCCEEeCCCCccCccCC----ccccCCCCCCEEeCCCCcccc
Q 041374 401 LDLSGNLLTGSI----PTEVGNL-KNLVQLDLSENHFSIEIP----VSLSACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 401 L~l~~n~l~~~~----~~~~~~l-~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~ 458 (513)
+++.+|++.+.. ...+..+ +.+++++++.|.+..... ..+..+++++.+.+++|.+..
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 677777665431 2223333 455667777776664332 334455666666666666654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.00023 Score=71.06 Aligned_cols=93 Identities=25% Similarity=0.351 Sum_probs=58.8
Q ss_pred CCCCCCEEEccCCcccccC----cccccCCCC-CCeeeCccccccccc----cccccCC-CCCcEEEcCCCCCCCCCCCC
Q 041374 202 SLPNLEDLSVRQNNYTGSL----PHSLSNASN-LQLLDLSLNHFSGQV----KIDFNRL-PNLFRLNFGKNNLGTGAIGD 271 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~~----~~~l~~l~~-L~~L~L~~n~~~~~~----~~~~~~l-~~L~~L~L~~n~~~~~~~~~ 271 (513)
...++++|.+++|.++... ...+...+. +.++++..|.+.+.. ...+..+ +.++.++++.|.++.....+
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 3556888888888776221 123344455 677888888876442 2233444 66788888888887654432
Q ss_pred chhhcccCCCcccccccccccccCC
Q 041374 272 LDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 272 ~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
....+..+++++.+.+++|.+..
T Consensus 282 --L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 --LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred --HHHHHhhhHHHHHhhcccCcccc
Confidence 33556677788888888776654
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.07 Score=25.93 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=2.9
Q ss_pred CEEECCCCC
Q 041374 471 KELDLSRNN 479 (513)
Q Consensus 471 ~~L~l~~n~ 479 (513)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.0026 Score=55.39 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.||++.+++.. +...+..++.+..|+++.|++. -+|..++....++.+++..|+.+. .|.++.+.+
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~--------~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~ 111 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK--------FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEP 111 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh--------hChhhHHHHHHHHHHHhhccchhh-CCccccccC
Confidence 678889988887654 3345666778888888888776 677788888888888888887766 788888889
Q ss_pred CCCEEEcccccCC
Q 041374 156 SLSFLDISENAFS 168 (513)
Q Consensus 156 ~L~~L~Ls~n~i~ 168 (513)
+++++++.++.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999998888765
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.016 Score=49.65 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=42.4
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCC-ccc-cCCCCCCEEeCCCC-cccccccccccCCCCCCEEEC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIP-VSL-SACTTLEYLYMEGN-SVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 475 (513)
+.+|-+++.|..+.-+.+..++.++.|.+.+|.--+... +.+ +-.++|+.|+|++| +|++.....+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 445555555554545555566666666666664321110 111 12356666666666 355555556666666666666
Q ss_pred CCC
Q 041374 476 SRN 478 (513)
Q Consensus 476 ~~n 478 (513)
.+=
T Consensus 184 ~~l 186 (221)
T KOG3864|consen 184 YDL 186 (221)
T ss_pred cCc
Confidence 543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.028 Score=48.12 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=61.9
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc-ccccccc-CCCCCCEEECCCCC-CCcccchhhhcccCc-e
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG-SIPLALN-TLKSIKELDLSRNN-LSGHIPEFLENLSFN-K 495 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-~l~~L~~L~l~~n~-l~~~~p~~l~~l~~l-~ 495 (513)
..++.+|-+++.+..+.-+.+..+++++.|.+.+|+--+ ..-+.+. -.++|+.|+|++|+ |+...-.++..++.| .
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 357899999999998888899999999999999996432 2222222 24799999999887 887777787777777 5
Q ss_pred EEccC
Q 041374 496 MNETI 500 (513)
Q Consensus 496 l~l~~ 500 (513)
+.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.078 Score=28.43 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=6.1
Q ss_pred CCCCEEeCCCCcccc
Q 041374 444 TTLEYLYMEGNSVTG 458 (513)
Q Consensus 444 ~~L~~L~L~~n~l~~ 458 (513)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344444555444443
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.072 Score=28.57 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=9.5
Q ss_pred CCCCEEECCCCCCCcccchh
Q 041374 468 KSIKELDLSRNNLSGHIPEF 487 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~ 487 (513)
++|+.|+|++|+|++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45566666666655444433
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.38 Score=26.26 Aligned_cols=14 Identities=57% Similarity=0.840 Sum_probs=8.8
Q ss_pred CCCCEEECCCCCCC
Q 041374 468 KSIKELDLSRNNLS 481 (513)
Q Consensus 468 ~~L~~L~l~~n~l~ 481 (513)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.38 Score=26.26 Aligned_cols=14 Identities=57% Similarity=0.840 Sum_probs=8.8
Q ss_pred CCCCEEECCCCCCC
Q 041374 468 KSIKELDLSRNNLS 481 (513)
Q Consensus 468 ~~L~~L~l~~n~l~ 481 (513)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.0069 Score=52.87 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=55.3
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
.+.||++.|++- .+-..+.-++.+..||++.|.+. ..|..+.....++.+++.+|... ..|.++...+.++.+++.+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 366777777654 23334445566777777777776 66777777777777777777766 6777777777777777777
Q ss_pred CCCC
Q 041374 478 NNLS 481 (513)
Q Consensus 478 n~l~ 481 (513)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 7754
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.91 E-value=0.42 Score=26.08 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=14.9
Q ss_pred CCCCEEecccCcCcccChHHHH
Q 041374 371 QNLMLLSVSNNKLTGALPPQIL 392 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~ 392 (513)
++|+.|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56778888888776 6666554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.91 E-value=0.42 Score=26.08 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=14.9
Q ss_pred CCCCEEecccCcCcccChHHHH
Q 041374 371 QNLMLLSVSNNKLTGALPPQIL 392 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~ 392 (513)
++|+.|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56778888888776 6666554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.80 E-value=0.36 Score=49.20 Aligned_cols=111 Identities=29% Similarity=0.264 Sum_probs=63.5
Q ss_pred ccCCCCCCEEecccC-cCcccCh---HHHHhhhcccceEEccCCc-CcccCCccccC-CCCCCEEeCCCCc-cCccCCcc
Q 041374 367 LGNCQNLMLLSVSNN-KLTGALP---PQILGILTLSILLDLSGNL-LTGSIPTEVGN-LKNLVQLDLSENH-FSIEIPVS 439 (513)
Q Consensus 367 l~~~~~L~~L~ls~n-~l~~~~p---~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-~~~~~~~~ 439 (513)
...++.|+.|+++++ ......+ ..+......++.++++.+. +++..-..+.. +++|+.|.+.+|. +++..-..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345788888888873 2221222 2233344556778888876 65444444433 7788888877776 45433322
Q ss_pred -ccCCCCCCEEeCCCCcccc-c-ccccccCCCCCCEEECCC
Q 041374 440 -LSACTTLEYLYMEGNSVTG-S-IPLALNTLKSIKELDLSR 477 (513)
Q Consensus 440 -~~~l~~L~~L~L~~n~l~~-~-~~~~~~~l~~L~~L~l~~ 477 (513)
...+++|++|++++|...+ . +......+++|+.+.+..
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 3457778888888876531 1 222334455555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 513 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 3e-25 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 3e-25 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-19 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 6e-13 | ||
| 2id5_A | 477 | Crystal Structure Of The Lingo-1 Ectodomain Length | 6e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 4e-88
Identities = 123/412 (29%), Positives = 184/412 (44%), Gaps = 30/412 (7%)
Query: 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156
L+ + ++ N + G++ + L+ +D++ N + +P LG +
Sbjct: 175 DGCGELKHLAISGNKISGDVD---------VSRCVNLEFLDVSSNNFSTGIP-FLGDCSA 224
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216
L LDIS N SG F +I + L+L+ N+ G +P L +L+ LS+ +N +
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---PLPLKSLQYLSLAENKF 281
Query: 217 TGSLPHSLS-NASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI 275
TG +P LS L LDLS NHF G V F L L NN +G + +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGEL----PM 336
Query: 276 AHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKN--LVNL 333
L L+ L N F G LP S+ NLS++++ + N G I P + L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 334 NGFGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSSLGNCQNLMLLSVSNNKLTG 385
L+ N TG IP + L L G +PSSLG+ L L + N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 386 ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445
+P +++ + TL L L N LTG IP+ + N NL + LS N + EIP +
Sbjct: 457 EIPQELMYVKTLETL-ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMN 497
L L + NS +G+IP L +S+ LDL+ N +G IP + S
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 6e-88
Identities = 132/482 (27%), Positives = 209/482 (43%), Gaps = 67/482 (13%)
Query: 31 HSNETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSI-- 88
S + ++ K L D + W+++ + C + GVTC R +VT + L ++ +
Sbjct: 8 QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNV 64
Query: 89 -GGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRV 147
+S + +L+ L + L++++++G + ++L ++D++ N L V
Sbjct: 65 GFSAVSSSLLSLTGLESLFLSNSHINGSVS--------GFKCSASLTSLDLSRNSLSGPV 116
Query: 148 PE--SLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205
SLG L FL++S N V+ G L +
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDF------------------------PGKVSGGLKLNS 152
Query: 206 LEDLSVRQNNYTGSLPHSL---SNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262
LE L + N+ +G+ L+ L +S N SG +D +R NL L+ N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSN 210
Query: 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGT 322
N + I L +CS L+ + N G +I+ + +L + NQ G
Sbjct: 211 NF-STGIPF------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN-ISSNQFVGP 262
Query: 323 IPPEVKNLVNLNGFGLEYNQLTGPIPHAI-GELRNLQ--------LRGNVPSSLGNCQNL 373
IPP L +L L N+ TG IP + G L G VP G+C L
Sbjct: 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 374 MLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK-NLVQLDLSENHF 432
L++S+N +G LP L + +LDLS N +G +P + NL +L+ LDLS N+F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 433 SIEIPVSLSAC--TTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490
S I +L TL+ LY++ N TG IP L+ + L LS N LSG IP L +
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 491 LS 492
LS
Sbjct: 441 LS 442
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 279 bits (717), Expect = 6e-86
Identities = 115/424 (27%), Positives = 187/424 (44%), Gaps = 24/424 (5%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
T L L G + P+ G+ S L + L+SNN GE+P + ++ + L+ +D+
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD------TLLKMRGLKVLDL 350
Query: 139 AGNRLHSRVPESLGQLR-SLSFLDISENAFSGMFHSSIFNI--SSLELIYPLENRLEGSL 195
+ N +PESL L SL LD+S N FSG ++ ++L+ +Y N G +
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255
P + + L L + N +G++P SL + S L+ L L LN G++ + + L
Sbjct: 411 PPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315
L N+L TG I + L+NC+ L L N G +P I L + IL +
Sbjct: 470 TLILDFNDL-TGEI-----PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL-KLS 522
Query: 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL----QLRGNVPSSLGNCQ 371
N G IP E+ + +L L N G IP A+ + + G + N
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 372 NLMLLSVSNN--KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSE 429
+ N + G Q+ L+ +++ + G N +++ LD+S
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 430 NHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLE 489
N S IP + + L L + N ++GSIP + L+ + LDLS N L G IP+ +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 490 NLSF 493
L+
Sbjct: 702 ALTM 705
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 5e-84
Identities = 129/450 (28%), Positives = 202/450 (44%), Gaps = 34/450 (7%)
Query: 58 NNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIP 117
NSIS G + L + I G + V L F++++SNN IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217
Query: 118 YEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177
+G+ SALQ++DI+GN+L ++ L L+IS N F G
Sbjct: 218 --------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P 267
Query: 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSL 237
+ SL+ + EN+ G +P + + L L + N++ G++P + S L+ L LS
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 238 NHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCS-KLEAFGLDTNIFG 295
N+FSG++ +D ++ L L+ N +G + + LTN S L L +N F
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPE-----SLTNLSASLLTLDLSSNNFS 381
Query: 296 GVLPLSIANLS-STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGEL 354
G + ++ +T+ + N G IPP + N L L +N L+G IP ++G L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 355 RNLQ--------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGN 406
L+ L G +P L + L L + N LTG +P + T + LS N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNN 500
Query: 407 LLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNT 466
LTG IP +G L+NL L LS N FS IP L C +L +L + N G+IP A+
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 467 LKSIKELDLSRNNLSGHIPEFLENLSFNKM 496
++ N ++G +++N K
Sbjct: 561 QS----GKIAANFIAGKRYVYIKNDGMKKE 586
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 7e-72
Identities = 116/420 (27%), Positives = 176/420 (41%), Gaps = 67/420 (15%)
Query: 97 GNLSFLRFVNLASNNLHGEIPYE------------------HGQLPPSIGN--LSALQNI 136
+ L+ ++L+ N GE+P G + P++ + LQ +
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
+ N ++P +L L L +S N SG SS+ ++S L + N LEG +P
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 197 VNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256
+ + LE L + N+ TG +P LSN +NL + LS N +G++ RL NL
Sbjct: 460 QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316
L N+ +G I L +C L L+TN+F G +P ++ S +
Sbjct: 519 LKLSNNSF-SGNIPA-----ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKIAA 567
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYN--QLTGPIPHAIGELRNLQ--------LRGNVPSS 366
N I G +KN N + G + L G+ +
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLD 426
N ++M L +S N L+G +P +I + L IL +L N ++GSIP EVG+L+ L LD
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL-NLGHNDISGSIPDEVGDLRGLNILD 686
Query: 427 LSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPE 486
LS N IP ++SA T L +DLS NNLSG IPE
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTE------------------------IDLSNNNLSGPIPE 722
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 203 bits (520), Expect = 8e-62
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 12/226 (5%)
Query: 278 LTNCSKLEAFGLDTNIFGGV--LPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNG 335
T ++ L +P S+ANL L+ G+N + G IPP + L L+
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 336 FGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSSLGNCQNLMLLSVSNNKLTGAL 387
+ + ++G IP + +++ L L G +P S+ + NL+ ++ N+++GA+
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 388 PPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE 447
P L + +S N LTG IP NL NL +DLS N + V + +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493
+++ NS+ + + K++ LDL N + G +P+ L L F
Sbjct: 225 KIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 2e-58
Identities = 95/366 (25%), Positives = 145/366 (39%), Gaps = 67/366 (18%)
Query: 33 NETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQ--WTGVTCGHRHR--RVTKLVLRNQSI 88
N D+ A L IK L +P SW + C W GV C + RV L L ++
Sbjct: 4 NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 89 GG--FLSPYVGNLSFLRFVNLAS-NNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHS 145
+ + NL +L F+ + NNL G IP P+I L+ L + I +
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-------PAIAKLTQLHYLYITHTNVSG 115
Query: 146 RVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205
+P+ L Q+++L LD S NA SG SI ++ +L I NR+ G++P + G
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 206 LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLG 265
+++ +N TG +P + +N NL +DLS N G LF
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD-------ASVLF---------- 217
Query: 266 TGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPP 325
+ + L N L + + L + N+IYGT+P
Sbjct: 218 -------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD-LRNNRIYGTLPQ 262
Query: 326 EVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNK-LT 384
+ L L+ + +N L G IP GN Q + + +NNK L
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP-----------------QGGNLQRFDVSAYANNKCLC 305
Query: 385 GA-LPP 389
G+ LP
Sbjct: 306 GSPLPA 311
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 2e-54
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 26/282 (9%)
Query: 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKI--DFNRLPNLFRLNFGKNNL 264
+ G L + + + LDLS + I LP L L G N
Sbjct: 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 265 GTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP 324
G I + ++L + G +P ++ + + + L N + GT+P
Sbjct: 89 LVGPIP-----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLP 142
Query: 325 PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT 384
P + +L NL G + N+++G IP + G L +++S N+LT
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKL---------------FTSMTISRNRLT 187
Query: 385 GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACT 444
G +PP L L+ + DLS N+L G G+ KN ++ L++N + ++ +
Sbjct: 188 GKIPPTF-ANLNLAFV-DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244
Query: 445 TLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPE 486
L L + N + G++P L LK + L++S NNL G IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-34
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLL 376
G + +N L L P P +PSSL N L L
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--------------IPSSLANLPYLNFL 81
Query: 377 SVSN-NKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435
+ N L G +PP I LT L ++ ++G+IP + +K LV LD S N S
Sbjct: 82 YIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 436 IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKS-IKELDLSRNNLSGHIPEFLENLSFN 494
+P S+S+ L + +GN ++G+IP + + + +SRN L+G IP NL+
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA 200
Query: 495 KMN 497
++
Sbjct: 201 FVD 203
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 356 NLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALP-PQILGILTLSILLDLSG-NLLTGSIP 413
N G + + + L +S L P P L L L + G N L G IP
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKEL 473
+ L L L ++ + S IP LS TL L N+++G++P ++++L ++ +
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 474 DLSRNNLSGHIPEFLENLS 492
N +SG IP+ + S
Sbjct: 155 TFDGNRISGAIPDSYGSFS 173
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 9e-51
Identities = 72/451 (15%), Positives = 136/451 (30%), Gaps = 81/451 (17%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQ------------LPPS 126
T++ + +I +S V L+ LR + ++ E E +
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244
Query: 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAF--------SGMFHSSIFNI 178
NL L ++++ +++P L L + ++++ N +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 179 SSLELIYPLENRL-EGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSL 237
+++IY N L + ++ + L L N G LP + + L L+L+
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362
Query: 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297
N + + L+F N L + I + S + A N G V
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSV 417
Query: 298 LPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL 357
+ + P +N++ L NQ++ L
Sbjct: 418 DGKNFDP------------------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459
Query: 358 Q---LRGN------------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLD 402
L GN + N L + + NKLT L + +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 403 LSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPL 462
LS N + PT+ N L + +GN P
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQ------------------RDAQGNRTLREWPE 560
Query: 463 ALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493
+ S+ +L + N++ + N+S
Sbjct: 561 GITLCPSLTQLQIGSNDIRKVNEKITPNISV 591
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-46
Identities = 64/495 (12%), Positives = 135/495 (27%), Gaps = 130/495 (26%)
Query: 56 SWNNSISLCQWT---GVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLS------------ 100
+WN + L W GV+ + RVT L L G + +G L+
Sbjct: 59 NWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117
Query: 101 ----------------FLRFVNLASNNLHGEIP-------------------YEHGQLPP 125
+ + +
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
S I N + V +++ +L L + + F + + E
Sbjct: 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-- 234
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK 245
+ + + +L +L D+ V LP L +QL++++ N +
Sbjct: 235 ---AQQYKTEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Query: 246 IDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANL 305
+ D +A K++ + N NL
Sbjct: 291 L----------------------KDDWQALADAPVGEKIQIIYIGYN-----------NL 317
Query: 306 SSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365
+ + ++ + L YNQL G +P
Sbjct: 318 KT-------------FPVETSLQKMKKLGMLECLYNQLEGKLP----------------- 347
Query: 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG-SIPTEVGNLKNLVQ 424
+ G+ L L+++ N++T +P G L + N L + ++ +
Sbjct: 348 AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406
Query: 425 LDLSENHFS-------IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477
+D S N + + + + + N ++ +T + ++L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 478 NNLSGHIPEFLENLS 492
N L+ L++ +
Sbjct: 467 NMLTEIPKNSLKDEN 481
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 5e-36
Identities = 52/345 (15%), Positives = 109/345 (31%), Gaps = 32/345 (9%)
Query: 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155
++ + + NNL + + S+ + L ++ N+L + G
Sbjct: 301 APVGEKIQIIYIGYNNL------KTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEI 353
Query: 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
L+ L+++ N + + + +E + N+L+ + S+ + + N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 216 YTG-------SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA 268
L + N+ ++LS N S K F+ L +N N L
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 269 IGDLDFI-AHLTNCSKLEAFGLDTNIFGGVLP-LSIANLSSTIILFTMGLNQIYGTIPPE 326
L + N L + L N + L + + + N P +
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID-LSYNSF-SKFPTQ 531
Query: 327 VKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGA 386
N L GFG+ + + + P + C +L L + +N +
Sbjct: 532 PLNSSTLKGFGIRNQRD----------AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK- 580
Query: 387 LPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENH 431
+ +I +++ LD+ N + V L +
Sbjct: 581 VNEKITPNISV---LDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 8e-30
Identities = 37/310 (11%), Positives = 84/310 (27%), Gaps = 43/310 (13%)
Query: 214 NNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLD 273
+ + SL++ + L L SG+V +L L L G + L
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER--LF 124
Query: 274 FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS-STIILFTMGLNQIYGTIPPEVKNLVN 332
++ E + S +I + + +I + +
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Query: 333 LNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQIL 392
G N +T V ++ L + N+ +
Sbjct: 185 DTQIGQLSNNITF-----------------VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227
Query: 393 GILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452
+ + + NLK+L +++ ++P L A ++ + +
Sbjct: 228 E------NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281
Query: 453 GNSVT--------GSIPLALNTLKSIKELDLSRNNL-SGHIPEFLEN--------LSFNK 495
N + I+ + + NNL + + L+ +N+
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341
Query: 496 MNETINDFCH 505
+ + F
Sbjct: 342 LEGKLPAFGS 351
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 8e-48
Identities = 79/442 (17%), Positives = 144/442 (32%), Gaps = 37/442 (8%)
Query: 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQN 135
+T L L + + + S L +++ N + P L L+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE-------PELCQKLPMLKV 77
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
+++ N L ++ +L+ L + N+ + ++ +L + N L S
Sbjct: 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-ST 136
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASN--LQLLDLSLNHFSGQVKIDFNRLPN 253
+ L NL++L + N L +N L+ L+LS N F+ +
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSST-IILF 312
LF L LG L T+ + L + + L T + +
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTS---IRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253
Query: 313 TMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ-------------- 358
+ N + L L F LEYN + H++ L N++
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 359 ---LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
L S + L L++ +N + G + + L L LS + + T
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTN 372
Query: 416 VG----NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP-LALNTLKSI 470
L L+L++N S + S LE L + N + + L++I
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 471 KELDLSRNNLSGHIPEFLENLS 492
E+ LS N +
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVP 454
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 2e-47
Identities = 85/443 (19%), Positives = 166/443 (37%), Gaps = 39/443 (8%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
KL L + I F + L + L + L + + ++++N+ +
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT----EKLCLELANTSIRNLSL 229
Query: 139 AGNRLHSRVPESLGQLR--SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
+ ++L + + L+ +L+ LD+S N + + + S + LE + N ++
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 197 VNIGFSLPNLEDLSVRQNNYTGSL---------PHSLSNASNLQLLDLSLNHFSGQVKID 247
++ L N+ L+++++ S+ S L+ L++ N G
Sbjct: 290 HSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
F L NL L+ + + + F L + S L L N + + + L
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETF-VSLAH-SPLHILNLTKNKISKIESDAFSWLGH 406
Query: 308 TIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN- 362
+L +GLN+I + + + L N+ L YN+ ++ + +LQ LR
Sbjct: 407 LEVLD-LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465
Query: 363 ------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT------- 409
PS +NL +L +SNN + + +L L +LDL N L
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHAN 524
Query: 410 -GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468
G + L +L L+L N F L+ + + N++ N
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584
Query: 469 SIKELDLSRNNLSGHIPEFLENL 491
S+K L+L +N ++ +
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPA 607
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 7e-47
Identities = 87/445 (19%), Positives = 147/445 (33%), Gaps = 39/445 (8%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
T+L L + SI + L ++L+ N L + L LQ + +
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-------LGTQVQLENLQELLL 152
Query: 139 AGNRLHSRVPESLG--QLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
+ N++ + E L SL L++S N I L ++ +L SL
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Query: 197 VNIGF--SLPNLEDLSVRQNNYTGSLPHSLSN--ASNLQLLDLSLNHFSGQVKIDFNRLP 252
+ + ++ +LS+ + + + + +NL +LDLS N+ + F LP
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272
Query: 253 NLFRLNFGKNNLGT---GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTI 309
L NN+ ++ L + +L + + S L
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332
Query: 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPH-------AIGELRNLQLRGN 362
L M N I G L+NL L + + A L L L N
Sbjct: 333 HL-NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Query: 363 -----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVG 417
+ +L +L + N++ L Q L + LS N
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Query: 418 NLKNLVQLDLSENHFS--IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475
+ +L +L L P L L + N++ L L+ ++ LDL
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511
Query: 476 SRNNLS--------GHIPEFLENLS 492
NNL+ G FL+ LS
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLS 536
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 4e-41
Identities = 66/416 (15%), Positives = 126/416 (30%), Gaps = 41/416 (9%)
Query: 102 LRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLD 161
+ + L Q+P + + + +++ N+L + + L+ LD
Sbjct: 6 HEVADCSHLKLT--------QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 162 ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221
+ N S + + L+++ N L L NL +L + N+
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 222 HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNC 281
+ NL LDLS N S +L NL L N + +LD
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF----AN 170
Query: 282 SKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVK---NLVNLNGFGL 338
S L+ L +N P + LF + Q+ ++ ++ ++ L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF-LNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 339 EYNQLTGPIPHAIGELRNLQLR----------GNVPSSLGNCQNLMLLSVSNNKLTGALP 388
+QL+ L+ L S L + N +
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 389 PQILGILTLSIL--------LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSL 440
+ G+ + L +S L LK L L++ +N
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
Query: 441 SACTTLEYLYMEGNSVTGSIP----LALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
+ L+YL + + + + L+L++N +S + L
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-28
Identities = 63/361 (17%), Positives = 113/361 (31%), Gaps = 27/361 (7%)
Query: 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEH--GQLPPSIGNLSAL 133
++ L +I S + L +R++NL + I S L L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331
Query: 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGM-FHSSIFNISSLELIYPL---EN 189
+++++ N + L +L +L +S + S + F + ++ L +N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Query: 190 RLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDF 248
++ L +LE L + N L N+ + LS N + + F
Sbjct: 392 KISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450
Query: 249 NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSST 308
+P+L RL + L L N L L N + + L
Sbjct: 451 ALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRN---LTILDLSNNNIANINDDMLEGLEKL 506
Query: 309 IILF-------TMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--- 358
IL + + G +K L +L+ LE N +L L+
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 359 -----LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP 413
L S N +L L++ N +T LD+ N +
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Query: 414 T 414
+
Sbjct: 627 S 627
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 11/202 (5%)
Query: 304 NLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL------ 357
+L + I + + NQ+ L + +N ++ P +L L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 358 --QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
+L + C NL L + +N + + I LDLS N L+ +
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Query: 416 VGNLKNLVQLDLSENHFS--IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKEL 473
L+NL +L LS N + + A ++L+ L + N + P + + + L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 474 DLSRNNLSGHIPEFLENLSFNK 495
L+ L + E L N
Sbjct: 201 FLNNVQLGPSLTEKLCLELANT 222
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-20
Identities = 66/382 (17%), Positives = 97/382 (25%), Gaps = 119/382 (31%)
Query: 58 NNSISLCQWTGVTCGH-RHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEI 116
N+ SL T T H + L L I S L L ++L N + E+
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Query: 117 PYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176
L + I ++ N+ S + SL L + A + S
Sbjct: 422 T------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--- 472
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236
P NL +LDLS
Sbjct: 473 --------------------------------------------PSPFQPLRNLTILDLS 488
Query: 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG 296
N+ + L L L+ NNL L + G
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLAR----------------------LWKHANPG 526
Query: 297 VLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRN 356
+ LS +L LN LE N +L
Sbjct: 527 GPIYFLKGLS----------------------HLHILN---LESNGFDEIPVEVFKDLFE 561
Query: 357 LQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV 416
L+ ++ + N L LP + L+L NL+T
Sbjct: 562 LK----------------IIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 417 G-NLKNLVQLDLSENHFSIEIP 437
G +NL +LD+ N F
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCE 626
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-45
Identities = 70/482 (14%), Positives = 142/482 (29%), Gaps = 62/482 (12%)
Query: 33 NETDRLAYLAIKSQLQ-----------DPLGVTKSWNNSISLCQW---TGVTCGHRHRRV 78
D A AI L + + +WN + L W GV + + RV
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRV 325
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
T L L G + +G L+ L+ ++ +++ + + I +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 139 AGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVN 198
++ + L L + S ++ ++ L NR+ +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN-LTNRIT-FISKA 443
Query: 199 IGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258
I L L+ + + +T + A + + + ++ ++ L +L +
Sbjct: 444 IQ-RLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQ 318
+ L L + +L++ + N L
Sbjct: 498 LYNCPN----MTQLP--DFLYDLPELQSLNIACNRGISAAQLKADWTR------------ 539
Query: 319 IYGTIPPEVKNLVNLNGFGLEYNQLTG-PIPHAIGELRNLQ---LRGN---VPSSLGNCQ 371
+ + + F + YN L P ++ ++ L N + G
Sbjct: 540 ----LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV 595
Query: 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP--TEVGNLKNLVQLDLSE 429
L L + N++ +P L S N L IP ++ + +D S
Sbjct: 596 KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653
Query: 430 NHFS-----IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
N I + + + N + T I + LS N ++ I
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712
Query: 485 PE 486
PE
Sbjct: 713 PE 714
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 4e-45
Identities = 70/438 (15%), Positives = 132/438 (30%), Gaps = 60/438 (13%)
Query: 94 PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQ 153
P + + ++L + + + +I L+ LQ I A + +
Sbjct: 412 PEMKPIKKDSRISLKDTQIGN-LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470
Query: 154 LRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQ 213
+ + EN S N+ L + LP + LP L+ L++
Sbjct: 471 DANSDYAKQYEN-----EELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIAC 524
Query: 214 NNYTG---------SLPHSLSNASNLQLLDLSLNHFSG-QVKIDFNRLPNLFRLNFGKNN 263
N L +Q+ + N+ ++ L L+ N
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584
Query: 264 LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTI 323
+ + KL LD N +P + + N++ I
Sbjct: 585 VRH--------LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YI 634
Query: 324 PP--EVKNLVNLNGFGLEYNQLTGPIPHAIGE--------LRNLQLRGN-----VPSSLG 368
P K++ + YN++ + + L N
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694
Query: 369 NCQNLMLLSVSNNKLTGALPPQILGILTLSIL-------LDLSGNLLTGSIPTE--VGNL 419
+ + +SNN +T ++P L + +DL N LT S+ + L
Sbjct: 695 TGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752
Query: 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLY------MEGNSVTGSIPLALNTLKSIKEL 473
L +D+S N FS P + L+ EGN + P + T S+ +L
Sbjct: 753 PYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Query: 474 DLSRNNLSGHIPEFLENL 491
+ N++ + L
Sbjct: 812 QIGSNDIRKVDEKLTPQL 829
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 2e-42
Identities = 67/440 (15%), Positives = 121/440 (27%), Gaps = 61/440 (13%)
Query: 90 GFLSPYVGNLSFLRFVNLASNNLHGEIPYEH------------GQLPPSIGNLSALQNID 137
F+S + L+ L+ + A++ + S NL L +++
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGM---------FHSSIFNISSLELIYPLE 188
+ +++P+ L L L L+I+ N +++ Y
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557
Query: 189 NRLEGSLPVNIGFS-LPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID 247
N LE P + + L L N + L L L N +
Sbjct: 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDF 614
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV-----LPLSI 302
+ L F N L + I + + + + N G +
Sbjct: 615 CAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT-------GPIPHAIGELR 355
+ + T+ N+I ++ L N +T P
Sbjct: 670 YKGINASTV-TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728
Query: 356 NLQ---LRGN----VPSSL--GNCQNLMLLSVSNNKLTGALPPQI-----LGILTLSILL 401
L LR N + L + VS N + P Q L +
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787
Query: 402 DLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP 461
D GN + PT + +L+QL + N ++ L L L + N
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDV 844
Query: 462 LALNTLKSIKELDLSRNNLS 481
++ L +
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-42
Identities = 59/384 (15%), Positives = 111/384 (28%), Gaps = 30/384 (7%)
Query: 120 HGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179
Q + N + + +AG RVP+++GQL L L ++ +
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371
Query: 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLN 238
+ ++ ++R+ L + Q+ + + S + L D +
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431
Query: 239 HFSGQVKI---DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG 295
+ + ++ RL L + F + + E D
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPF-----------TYDNIAVDWEDANSDYAKQY 480
Query: 296 GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELR 355
LS +NL + + +P + +L L + N+ +
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWT 538
Query: 356 NLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
L + + + N L L + LLD N +
Sbjct: 539 RL------ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEA 590
Query: 416 VGNLKNLVQLDLSENHFSIEIPVSLSACTT-LEYLYMEGNSVTGSIP--LALNTLKSIKE 472
G L L L N EIP A T +E L N + IP ++ +
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648
Query: 473 LDLSRNNLSGHIPEFLENLSFNKM 496
+D S N + ++ K
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKG 672
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 4e-43
Identities = 88/453 (19%), Positives = 154/453 (33%), Gaps = 35/453 (7%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
L I + N L + L SN++ P L+ +D
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-------PKGFPTEKLKVLDF 160
Query: 139 AGNRLHSRVPESLGQLRSLS--FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
N +H E + L+ + L+++ N +G F+ + + + + +
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 197 VNIGFS-LPNLEDLSVRQNNYTGSLPHSLSNASNLQL--LDLSLNHFSGQVKIDFNRLPN 253
+ S + +L + + P + + ++L ++F F+
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L L+ +L + L S L+ L N F + +S +N S L
Sbjct: 280 LQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS- 331
Query: 314 MGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLT--GPIPHAIGELRNLQ---LRGN----- 362
+ N + +NL NL L ++ + + L +LQ L N
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 363 VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNL 422
+ C L LL ++ +L L L +L+LS +LL S L L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 423 VQLDLSENHFS---IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNN 479
L+L NHF I+ SL LE L + ++ A +LK + +DLS N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 480 LSGHIPEFLENLSFNKMNETINDFCHHKPKVFA 512
L+ E L +L +N N P +
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 6e-41
Identities = 76/428 (17%), Positives = 132/428 (30%), Gaps = 26/428 (6%)
Query: 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNID 137
L + + L L F++L ++ + + L +
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH-------EDTFQSQHRLDTLV 87
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ N L +L ++L L + S + + N +LE +Y N + S+ +
Sbjct: 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKL 146
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH-FSGQVKIDFNRLPNLFR 256
GF L+ L + N +S+ L L+LN ++
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206
Query: 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS-STIILFTMG 315
LNFG L + L + + P L ++ +
Sbjct: 207 LNFGGTQNLLVIFKGLKN----STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262
Query: 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNV-----PSSL 367
+ + L L L+ +P + L L+ L N S
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 368 GNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGS--IPTEVGNLKNLVQL 425
N +L LS+ N L L L LDLS + + S ++ NL +L L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381
Query: 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRNNLSGHI 484
+LS N + C LE L + + L +K L+LS + L
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441
Query: 485 PEFLENLS 492
+ + L
Sbjct: 442 EQLFDGLP 449
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 9e-32
Identities = 69/397 (17%), Positives = 130/397 (32%), Gaps = 35/397 (8%)
Query: 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESL 151
+ P + + + +N I + +L P
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS-----TIQSLWLGTFEDMDDEDISPAVF 248
Query: 152 GQLRSLS--FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209
L +S +++ ++ F + ++ S L+ + L LP + L L+ L
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKL 306
Query: 210 SVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGA 268
+ N + S SN +L L + N ++ L NL L+ +++ T
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366
Query: 269 IGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV- 327
+L N S L++ L N + + +L + ++
Sbjct: 367 CCNLQL----RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD-LAFTRLKVKDAQSPF 421
Query: 328 KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGAL 387
+NL L L ++ L L LQ L++ N
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQH----------------LNLQGNHFPKGN 465
Query: 388 PPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445
+ + TL L L LS L+ +LK + +DLS N + +LS
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525
Query: 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSG 482
+ YL + N ++ +P L L + ++L +N L
Sbjct: 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 70/393 (17%), Positives = 123/393 (31%), Gaps = 60/393 (15%)
Query: 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDI 162
+ N + L+ EIP G LP S + ++ + N L + + +L +L+FLD+
Sbjct: 15 KTYNCENLGLN-EIP---GTLPNS------TECLEFSFNVLPTIQNTTFSRLINLTFLDL 64
Query: 163 SENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH 222
+ H F S L+ L + N
Sbjct: 65 TRCQIYW-IHEDTFQ------------------------SQHRLDTLVLTANPLIFMAET 99
Query: 223 SLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCS 282
+LS L+ L S I + L L G N++ + +
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP------KGFPTE 153
Query: 283 KLEAFGLDTNIFGGVLPLSIANLSS-TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN 341
KL+ N + +++L T + + N I I P +
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGT 212
Query: 342 QLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL- 400
Q I + Q+L L + + P G+ +S+
Sbjct: 213 QNLLVIFKGLKNS--------------TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
++L + L +LDL+ H S E+P L +TL+ L + N
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317
Query: 461 PLALNTLKSIKELDLSRNNLSGHI-PEFLENLS 492
++ + S+ L + N + LENL
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 69/362 (19%), Positives = 117/362 (32%), Gaps = 39/362 (10%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSF--LRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNI 136
+ L + +NL + + S LQ +
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN-------TFHCFSGLQEL 283
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
D+ L S +P L L +L L +S N F + S N SL + N L
Sbjct: 284 DLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 197 VNIGFSLPNLEDLSVRQNN--YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNL 254
+L NL +L + ++ + L N S+LQ L+LS N F P L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402
Query: 255 FRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTM 314
L+ L D + N L+ L ++ L + L +
Sbjct: 403 ELLDLAFTRLKV-----KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN-L 456
Query: 315 GLNQIYGTI---PPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ 371
N ++ L L L + L+ HA L+ +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH------------ 504
Query: 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENH 431
+ +S+N+LT + L L I L+L+ N ++ +P+ + L ++L +N
Sbjct: 505 ----VDLSHNRLTS-SSIEALSHLK-GIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558
Query: 432 FS 433
Sbjct: 559 LD 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 1e-40
Identities = 77/431 (17%), Positives = 141/431 (32%), Gaps = 31/431 (7%)
Query: 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNID 137
L L + S + L+ ++L+ + + +LS L +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-------DGAYQSLSHLSTLI 82
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ GN + S + L SL L E + + + I ++ +L+ + N ++
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQL----LDLSLNHFSGQVKIDFNRLPN 253
+L NLE L + N L + L LDLSLN + F +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPL------SIANLSS 307
L +L N + + + LE L F L ++ L +
Sbjct: 202 LHKLTLRNNFDSLNVMKTC-----IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 308 TIILFTM--GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAI-GELRNLQLRGNVP 364
I L+ I L N++ F L + + ++L+L
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT--GSIPTEVGNLKNL 422
+ L ++ G + + +L LDLS N L+ G +L
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF-LDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 423 VQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRNNLS 481
LDLS N + + LE+L + +++ +L+++ LD+S +
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 482 GHIPEFLENLS 492
LS
Sbjct: 435 VAFNGIFNGLS 445
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-39
Identities = 84/440 (19%), Positives = 134/440 (30%), Gaps = 56/440 (12%)
Query: 84 RNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQL-------------------- 123
N L Y NL+ L ++L+SN + + L
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 124 PPSIGNLSALQNIDIAGNRLHSRVPE-SLGQLRSLSFLDISENAFSGMFHSSIFNISSLE 182
P L + + N V + + L L + F + F+ S+LE
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 183 LIYPLE--------NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234
+ L +++ L N+ S+ S Q L+
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLE 310
Query: 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN-- 292
L F +L +L RL F N G + LE L N
Sbjct: 311 LVNCKFGQ---FPTLKLKSLKRLTFTSNKGGN--------AFSEVDLPSLEFLDLSRNGL 359
Query: 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPH-AI 351
F G S +S L + N + T+ L L +++ L
Sbjct: 360 SFKGCCSQSDFGTTSLKYLD-LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 352 GELRNLQ--------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDL 403
LRNL R +L +L ++ N P I L LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 404 SGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLA 463
S L PT +L +L L++S N+F +L+ L N + S
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 464 L-NTLKSIKELDLSRNNLSG 482
L + S+ L+L++N+ +
Sbjct: 538 LQHFPSSLAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-30
Identities = 72/398 (18%), Positives = 123/398 (30%), Gaps = 30/398 (7%)
Query: 58 NNSISLCQWTGVTCGHRHRRVTKLVL-RNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEI 116
NN SL G V +LVL ++ G L L + + L +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY-L 267
Query: 117 PYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176
Y + L+ + + + + + L++ F +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLK 325
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLE--DLSVRQNNYTGSLPHSLSNASNLQLLD 234
++ L + LP+LE DLS ++ G S ++L+ LD
Sbjct: 326 SLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIF 294
LS N + +F L L L+F +NL + + L N L +
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRN---LIYLDISHTHT 433
Query: 295 GGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGE 353
LSS +L M N P++ L NL L QL P A
Sbjct: 434 RVAFNGIFNGLSSLEVLK-MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 354 LRNLQ--------LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSG 405
L +LQ +L +L S N + + ++ + L+L+
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 406 NLLTGSIPTE--VGNLKNLVQLDLSENHFSIEIPVSLS 441
N + + + +K+ QL + P
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-28
Identities = 72/395 (18%), Positives = 125/395 (31%), Gaps = 46/395 (11%)
Query: 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG 200
++P++L S LD+S N + S F+ L+++ ++
Sbjct: 16 ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 201 FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260
SL +L L + N + S S+LQ L + + L L LN
Sbjct: 74 -SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT---MGLN 317
N + + + + +N + LE L +N + + L +L + LN
Sbjct: 133 HNLIQSFKLPEY-----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP----HAIGELRNLQLRGNV---------- 363
+ I P + L+ L N + + + L +L
Sbjct: 188 PM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 364 -PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLK 420
S+L NL + L L I L+ + L +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF 304
Query: 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNL 480
L+L F + L + L + +G + L S++ LDLSRN L
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGL 359
Query: 481 S--GHIPEFLEN--------LSFNKMNETINDFCH 505
S G + LSFN + ++F
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 7e-16
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 379 SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438
+P + LDLS N L + L LDLS
Sbjct: 15 MELNFY-KIPDNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 439 SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
+ + + L L + GN + A + L S+++L NL+ + +L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 14/156 (8%)
Query: 85 NQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLH 144
N FL L L F++L+ L P + +LS+LQ ++++ N
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-------TAFNSLSSLQVLNMSHNNFF 507
Query: 145 SRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI-SSLELIYPLENRLEGSLPVNIGFS- 202
S L SL LD S N + + SSL + +N + + F
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE-HQSFLQ 566
Query: 203 -LPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSL 237
+ + L V + P + +L L++
Sbjct: 567 WIKDQRQLLVEVERMECATPSDK---QGMPVLSLNI 599
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-36
Identities = 77/456 (16%), Positives = 142/456 (31%), Gaps = 59/456 (12%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
LV + S +G L L+ +N+A N +H +LP NL+ L ++D+
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS------CKLPAYFSNLTNLVHVDL 160
Query: 139 AGNRLHSRVPESLGQLRSLSF----LDISENAFSGMFHSSIFNISSLELIYPLENRLEGS 194
+ N + + L LR LD+S N F L + N +
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSN 219
Query: 195 LPVNIGFSLPNLEDLSVRQNNYTGSL------PHSLSNASNLQLLDLSLNH--FSGQVKI 246
+ +L L + + P + ++ + + L + +
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279
Query: 247 DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
F+ L N+ ++ ++ + + K ++ + L + L
Sbjct: 280 KFHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331
Query: 307 S--------TIILFTMGL----------NQIYGTIPPEVKNL--VNLNGFGLEYNQLTGP 346
S +I + L N + + +L +L L +N
Sbjct: 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII- 390
Query: 347 IPHAIGELRNLQ---LRGN------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTL 397
+ L LQ + + S+ + + L+ L +S I LT
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTS 449
Query: 398 SILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSV 456
L ++GN + + V N NL LDLS+ L+ L M N++
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 457 TGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
N L S+ LD S N +
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 64/421 (15%), Positives = 126/421 (29%), Gaps = 38/421 (9%)
Query: 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESL 151
L Y NL+ L V+L+ N + + L N ++D++ N + + +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR---ENPQVNLSLDMSLNPIDF-IQDQA 200
Query: 152 GQLRSLSFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEG-----SLPVNIGFSLPN 205
Q L L + N S + N++ L + + + +I L +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 206 L--EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNN 263
+ ++ + N +N+ + L+ + L+ +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQ 318
Query: 264 LGTGAIGDLDFIAHL-------------TNCSKLEAFGLDTNIFGGVLPLSIANLSST-I 309
L DL F+ L L L N S ++L + +
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378
Query: 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNLQ--------LR 360
+ N + L L +++ L A L L +
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 361 GNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK 420
+ +L L ++ N + T LDLS L L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNL 480
L L++S N+ + +L L N + S + + KS+ +L+ N++
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 481 S 481
+
Sbjct: 558 A 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 67/378 (17%), Positives = 120/378 (31%), Gaps = 30/378 (7%)
Query: 121 GQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180
G L P I + + +L VP+ + S +D+S N + S N S
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
Query: 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHF 240
L+ + +E L +L +L + N P S S ++L+ L
Sbjct: 58 LQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 241 SGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPL 300
+ +L L +LN N I A+ +N + L L N +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNF-----IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171
Query: 301 SIANLSSTIILFT---MGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRN 356
+ L + M LN I I + + L+ L N + I + L
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230
Query: 357 LQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV 416
L + + + +NL + S + + L+ +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDV---------TIDEFRLTYTNDFSDDIVKF 281
Query: 417 GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLS 476
L N+ + L+ SI+ + + L + + L +K L L+
Sbjct: 282 HCLANVSAMSLAGV--SIKYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLT 336
Query: 477 RNNLSGHIPE-FLENLSF 493
N S + L +LS+
Sbjct: 337 MNKGSISFKKVALPSLSY 354
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-33
Identities = 88/430 (20%), Positives = 157/430 (36%), Gaps = 53/430 (12%)
Query: 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNID 137
K VL ++ + +L + + + + L+ L I+
Sbjct: 26 KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS---------IDGVEYLNNLTQIN 74
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ N+L L L L + ++ N + + + + N+++L + N++ P+
Sbjct: 75 FSNNQLTD--ITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 130
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
+L NL L + N + +LS ++LQ L L L RL
Sbjct: 131 K---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182
Query: 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317
+ N + D+ +A LTN LE+ N + PL L++ L ++ N
Sbjct: 183 DISSNK-----VSDISVLAKLTN---LESLIATNNQISDITPLG--ILTNLDEL-SLNGN 231
Query: 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN---VPSSLGNCQ 371
Q+ + +L NL L NQ++ P + L L L N S L
Sbjct: 232 QL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT 287
Query: 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENH 431
L L ++ N+L P + L L L N ++ P V +L L +L N
Sbjct: 288 ALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342
Query: 432 FSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491
+ SL+ T + +L N ++ PLA L I +L L+ + + N+
Sbjct: 343 --VSDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANV 398
Query: 492 SFNKMNETIN 501
S + +
Sbjct: 399 SIPNTVKNVT 408
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-29
Identities = 96/401 (23%), Positives = 157/401 (39%), Gaps = 52/401 (12%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
L+ L N+ + +L + + + S + + L +L
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS---------QTDLDQVTTLQADRLGIKS--IDGVEYLNNL 70
Query: 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT 217
+ ++ S N + + + + N++ L I N++ P+ +L NL L++ N T
Sbjct: 71 TQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNNQIT 125
Query: 218 GSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277
P L N +NL L+LS N S + L +L +L+FG +
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---------LKP 172
Query: 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFG 337
L N + LE + +N + L+ L++ L NQI + + L NL+
Sbjct: 173 LANLTTLERLDISSNKVSDISVLA--KLTNLESLI-ATNNQI--SDITPLGILTNLDELS 227
Query: 338 LEYNQLTGPIPHAIGELRNLQ---LRGN---VPSSLGNCQNLMLLSVSNNKLTGALPPQI 391
L NQL + L NL L N + L L L + N+++ + P
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISP-- 282
Query: 392 LGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451
L LT L+L+ N L P + NLKNL L L N+ S P +S+ T L+ L+
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338
Query: 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP-EFLENL 491
N V+ LA L +I L N +S P L +
Sbjct: 339 YNNKVSDVSSLA--NLTNINWLSAGHNQISDLTPLANLTRI 377
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-29
Identities = 91/409 (22%), Positives = 157/409 (38%), Gaps = 51/409 (12%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
T++ N + + NL+ L + + +N + P + NL+ L + +
Sbjct: 71 TQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP---------LANLTNLTGLTL 119
Query: 139 AGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVN 198
N++ + L L +L+ L++S N S + S++ ++SL+ + N++ P+
Sbjct: 120 FNNQITD--IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLS-FGNQVTDLKPLA 174
Query: 199 IGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258
+L LE L + N + L+ +NL+ L + N S L NL L+
Sbjct: 175 ---NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELS 227
Query: 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQ 318
N L I L + + L L N + PLS L+ L +G NQ
Sbjct: 228 LNGNQLKD--------IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELK-LGANQ 276
Query: 319 IYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN---VPSSLGNCQN 372
I P + L L L NQL P I L+NL L N S + +
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 332
Query: 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHF 432
L L NNK++ L LT L N ++ P + NL + QL L++ +
Sbjct: 333 LQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387
Query: 433 SIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
+ + + + ++ P ++ S E D++ N S
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-28
Identities = 82/374 (21%), Positives = 142/374 (37%), Gaps = 44/374 (11%)
Query: 125 PSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELI 184
+ L+ + + S L ++ L + + +++L I
Sbjct: 18 FTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 73
Query: 185 YPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQV 244
N+L P+ +L L D+ + N P L+N +NL L L N +
Sbjct: 74 NFSNNQLTDITPLK---NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 127
Query: 245 KIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIAN 304
L NL RL N + I+ L+ + L+ + +AN
Sbjct: 128 -DPLKNLTNLNRLELSSNTISD--------ISALSGLTSLQQLSFGNQVTD---LKPLAN 175
Query: 305 LSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRG 361
L++ L + N++ + + L NL NQ++ P +G L NL L G
Sbjct: 176 LTTLERL-DISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 362 N---VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGN 418
N +L + NL L ++NN+++ P L LT L L N ++ P +
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT---ELKLGANQISNISP--LAG 285
Query: 419 LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478
L L L+L+EN P +S L YL + N+++ P++ +L ++ L N
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNN 341
Query: 479 NLSGHIPEFLENLS 492
+S L NL+
Sbjct: 342 KVSD--VSSLANLT 353
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 76/349 (21%), Positives = 134/349 (38%), Gaps = 45/349 (12%)
Query: 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156
NL+ L + L+SN + ++ L++LQ + + L L +
Sbjct: 131 KNLTNLNRLELSSNTISD---------ISALSGLTSLQQLSFGNQVTD---LKPLANLTT 178
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216
L LDIS N S + S + +++LE + N++ P+ L NL++LS+ N
Sbjct: 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQL 233
Query: 217 TGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIA 276
+L++ +NL LDL+ N S + L L L G N I ++ +A
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQ-----ISNISPLA 284
Query: 277 HLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336
LT L L+ N + P+S NL + L + N I P V +L L
Sbjct: 285 GLTA---LTNLELNENQLEDISPIS--NLKNLTYLT-LYFNNISDISP--VSSLTKLQRL 336
Query: 337 GLEYNQLTGPIPHAIGELRNLQ---LRGN---VPSSLGNCQNLMLLSVSNNKLTGALPPQ 390
N+++ + L N+ N + L N + L +++ T P
Sbjct: 337 FFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN-APVN 393
Query: 391 ILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVS 439
+++ + L P + + + + D++ N S VS
Sbjct: 394 YKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNEVS 440
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-19
Identities = 66/301 (21%), Positives = 116/301 (38%), Gaps = 48/301 (15%)
Query: 206 LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLG 265
L ++ Q+ + + + + L + + + L + L +
Sbjct: 3 LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG-- 57
Query: 266 TGAIGDLDFIAHLTN-------------------CSKLEAFGLDTNIFGGVLPLSIANLS 306
I +D + +L N +KL ++ N + PL+ NL+
Sbjct: 58 ---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA--NLT 112
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNV 363
+ L + NQI T +KNL NLN L N ++ + L +LQ V
Sbjct: 113 NLTGLT-LFNNQI--TDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV 167
Query: 364 --PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKN 421
L N L L +S+NK++ +L LT L + N ++ P +G L N
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTN 222
Query: 422 LVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
L +L L+ N ++ +L++ T L L + N ++ PL+ L + EL L N +S
Sbjct: 223 LDELSLNGNQ--LKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS 278
Query: 482 G 482
Sbjct: 279 N 279
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 39/174 (22%)
Query: 94 PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQ 153
+ NL L ++ L NN+ P + +L+ LQ + N++ SL
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISP---------VSSLTKLQRLFFYNNKVSD--VSSLAN 351
Query: 154 LRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQ 213
L ++++L N S + + + N++ + + + + PVN ++ +V+
Sbjct: 352 LTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWT-NAPVNYKANVSIPN--TVKN 406
Query: 214 NNYTGSLPHSLSNASNLQLLDLSLNH-----------------------FSGQV 244
P ++S+ + D++ N FSG V
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTV 460
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 80/403 (19%), Positives = 158/403 (39%), Gaps = 59/403 (14%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
L I +L+ L ++ + L ++ + +
Sbjct: 3 ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD---------VVTQEELESITKLVV 51
Query: 139 AGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVN 198
AG ++ S + + L +L +L+++ N + + S + N+ L +Y N++ +
Sbjct: 52 AGEKVAS--IQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISALQ 107
Query: 199 IGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258
+L NL +L + ++N + P L+N + + L+L NH + + + L L
Sbjct: 108 ---NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161
Query: 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQ 318
++ + D+ IA+LT+ L + L+ N + PL+ +L+S +NQ
Sbjct: 162 VTESK-----VKDVTPIANLTD---LYSLSLNYNQIEDISPLA--SLTSLHYFT-AYVNQ 210
Query: 319 IYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSV 378
I T V N+ LN + N++T P L N L L +
Sbjct: 211 I--TDITPVANMTRLNSLKIGNNKITDLSP------------------LANLSQLTWLEI 250
Query: 379 SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438
N+++ + + LT +L++ N ++ + + NL L L L+ N E
Sbjct: 251 GTNQISD-INA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305
Query: 439 SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
+ T L L++ N +T PLA +L + D + +
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 67/367 (18%), Positives = 136/367 (37%), Gaps = 72/367 (19%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
+L+ + + + +L S++ L ++ + + I +++LE +
Sbjct: 17 PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI--QGIEYLTNLEYLN 72
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK 245
N++ P++ +L L +L + N T +L N +NL+ L L+ ++ S
Sbjct: 73 LNGNQITDISPLS---NLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD--I 125
Query: 246 IDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANL 305
L ++ LN G N+ + DL ++++T + L +
Sbjct: 126 SPLANLTKMYSLNLGANHN----LSDLSPLSNMTGLNYL-------------------TV 162
Query: 306 SSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365
+ +++ + NL +L L YNQ+ P
Sbjct: 163 TE---------SKV--KDVTPIANLTDLYSLSLNYNQIEDISP----------------- 194
Query: 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQL 425
L + +L + N++T + P + +T L + N +T P + NL L L
Sbjct: 195 -LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248
Query: 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485
++ N I ++ T L+ L + N ++ L N L + L L+ N L
Sbjct: 249 EIGTNQ--ISDINAVKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDM 304
Query: 486 EFLENLS 492
E + L+
Sbjct: 305 EVIGGLT 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 63/376 (16%), Positives = 118/376 (31%), Gaps = 58/376 (15%)
Query: 121 GQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180
G + S +N+ G+ + L Q + D + + N ++
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57
Query: 181 LELIYPLENRLEGSLPVNIGF-SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH 239
++ L+ + + + P L +R P S+LQ + +
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 240 FSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP 299
++ + L L +N L LP
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLRA-------------------------------LP 143
Query: 300 LSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQL 359
SIA+L+ L ++ +P + + N L++L+L
Sbjct: 144 ASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQGLVN------------LQSLRL 190
Query: 360 RGN----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
+P+S+ N QNL L + N+ L+ AL P I L LDL G + P
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEELDLRGCTALRNYPPI 248
Query: 416 VGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475
G L +L L + + +P+ + T LE L + G +P + L + + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308
Query: 476 SRNNLSGHIPEFLENL 491
+ +
Sbjct: 309 PPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-27
Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 33/307 (10%)
Query: 203 LPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262
E+L + + LS D + H + + N
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQIETRTGR 66
Query: 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGT 322
L D + T A L + P LS + + +
Sbjct: 67 ALKA----TADLLEDATQ-PGRVALELRSVPLP-QFPDQAFRLSHLQHMT-IDAAGL-ME 118
Query: 323 IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN-----VPSSLGNC---- 370
+P ++ L L N L +P +I L L+ +R +P L +
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 371 -----QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQL 425
NL L + + +LP I L L + + L+ ++ + +L L +L
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234
Query: 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485
DL P L+ L ++ S ++PL ++ L +++LDL +P
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 486 EFLENLS 492
+ L
Sbjct: 295 SLIAQLP 301
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 52/293 (17%), Positives = 88/293 (30%), Gaps = 75/293 (25%)
Query: 74 RHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSAL 133
L LR+ + LS L+ + + + L +LP ++ + L
Sbjct: 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM--------ELPDTMQQFAGL 129
Query: 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG 193
+ + +A N L + +P S+ L L L I L
Sbjct: 130 ETLTLARNPLRA-LPASIASLNRLRELSIRAC-----------------------PELT- 164
Query: 194 SLPVNIG--------FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK 245
LP + L NL+ L + SLP S++N NL+ L + + S +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222
Query: 246 IDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANL 305
+ LP L L+ L C+ L P
Sbjct: 223 PAIHHLPKLEELD-------------------LRGCTALRN-----------YPPIFGGR 252
Query: 306 SSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ 358
+ L + + T+P ++ L L L +P I +L
Sbjct: 253 APLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 14/172 (8%)
Query: 328 KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN----VPSSLGNCQNLMLLSVSNNKL 383
NL G L P + + + N N + + + L
Sbjct: 12 SGRENLYFQGS--TALR-PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL 68
Query: 384 TGALPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441
+L T L+L L P + L +L + + E+P ++
Sbjct: 69 KAT--ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124
Query: 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493
LE L + N + ++P ++ +L ++EL + +PE L +
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 5/173 (2%)
Query: 96 VGNLSFLRFVNLASNNLHGEIPYEHGQL--PPSIGNLSALQNIDIAGNRLHSRVPESLGQ 153
+ +L+ LR +++ + E+P L LQ++ + + +P S+
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIAN 204
Query: 154 LRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQ 213
L++L L I + S +I ++ LE + + P G L+ L ++
Sbjct: 205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKD 262
Query: 214 NNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266
+ +LP + + L+ LDL ++ +LP + +
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG-NRLHSRVPES 150
L P + +L L ++L PP G + L+ + + + L + +P
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRN-------YPPIFGGRAPLKRLILKDCSNLLT-LPLD 272
Query: 151 LGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLP 204
+ +L L LD+ S I + + +I + L+ L + + P
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL-VPPHLQAQLDQHRPVARP 325
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 78/434 (17%), Positives = 148/434 (34%), Gaps = 38/434 (8%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
KLV ++ + +G+L L+ +N+A N + +LP NL+ L+++D+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ------SFKLPEYFSNLTNLEHLDL 156
Query: 139 AGNRLHSRVPESLGQLRSLSF----LDISENAFSGMFHSSIFNISSLELIYPLENRLEGS 194
+ N++ S L L + LD+S N + F L + N +
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLN 215
Query: 195 LPVNIGFSLPNLEDLS------VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDF 248
+ L LE + N +L NL + + L + +
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275
Query: 249 NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSST 308
+ L ++ +L + I + ++ LE F + S+ L+
Sbjct: 276 DLFNCLTNVS--SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-- 331
Query: 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT--GPIPHAIGELRNLQ---LRGN- 362
G +L +L L N L+ G + +L+ L N
Sbjct: 332 -------FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 363 ---VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419
+ S+ + L L ++ L + L I LD+S + L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 420 KNLVQLDLSENHFSIEI-PVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478
+L L ++ N F P + L +L + + P A N+L S++ L+++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 479 NLSGHIPEFLENLS 492
L + L+
Sbjct: 505 QLKSVPDGIFDRLT 518
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-28
Identities = 78/451 (17%), Positives = 140/451 (31%), Gaps = 46/451 (10%)
Query: 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNID 137
L L + S + L+ ++L+ + I + +LS L +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE------DGAYQSLSHLSTLI 82
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
+ GN + S + L SL L E + + + I ++ +L+ + N ++ S +
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL 141
Query: 198 NIGFS-LPNLEDLSVRQNNYTGSLPHSLSNASNLQL----LDLSLNHFSGQVKIDFNRLP 252
FS L NLE L + N L + L LDLSLN + ++ +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200
Query: 253 NLFRLNFGKNNLGT----GAIGDLDF---------------------IAHLTNCSKLEAF 287
L +L N I L + L L
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 288 GLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPI 347
L I + + + L + + L +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 348 PHAIGELRNLQLRGNVPSSLG---NCQNLMLLSVSNNKLTG-ALPPQILGILTLSILLDL 403
+ L+ L N + + +L L +S N L+ Q T LDL
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 404 SGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVS-LSACTTLEYLYMEGNSVTGSIPL 462
S N + ++ + L+ L LD ++ S + L YL + +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 463 ALNTLKSIKELDLSRNNLSGHI-PEFLENLS 492
N L S++ L ++ N+ + P+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 70/407 (17%), Positives = 128/407 (31%), Gaps = 61/407 (14%)
Query: 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG 200
++P++L S LD+S N + S F+ L+++ ++ ++
Sbjct: 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAY 72
Query: 201 FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260
SL +L L + N + S S+LQ L + + L L LN
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT---MGLN 317
N + + + + +N + LE L +N + + L +L + LN
Sbjct: 133 HNLIQSFKLPEY-----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPH-AIGELRNLQLRGNVPSSLGNCQNLM-- 374
+ I P + L+ L N + + I L L++ V N NL
Sbjct: 188 PM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 375 --------------LLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGN-- 418
++ + LT L + + N
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG 305
Query: 419 ------------------LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT--G 458
LK+L +L + N S +LE+L + N ++ G
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLE-------NLSFNKMNE 498
+ S+K LDLS N + FL + + + +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 379 SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438
+P + LDLS N L + L LDLS
Sbjct: 15 MELNFY-KIPDNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 439 SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
+ + + L L + GN + A + L S+++L NL+ + +L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 79 TKLVLRNQSIGGFLSPYV-GNLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNI 136
L ++ ++ V +L L +++++ + I LS+L+ +
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--------AFNGIFNGLSSLEVL 450
Query: 137 DIAGNRLHSRV-PESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
+AGN P+ +LR+L+FLD+S+ + ++ ++SSL+++ N+L+ S+
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SV 509
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPH 222
P I L +L+ + + N + S P
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 77/400 (19%), Positives = 141/400 (35%), Gaps = 76/400 (19%)
Query: 83 LRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGN 141
+ Q+ + L+ + V ++ + +LP ++ + ++ +++
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--------KLPAALLDSFRQVELLNLNDL 79
Query: 142 RLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGF 201
++ + ++ L + NA + N+ L ++ N L SLP I
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 138
Query: 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGK 261
+ P L LS+ NN + ++LQ L LS N + +D + +P+LF N
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSY 195
Query: 262 NNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG 321
N L T L +E N +++
Sbjct: 196 NLLST-----------LAIPIAVEELDASHN-----------SINV-------------- 219
Query: 322 TIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNN 381
+ V V L L++N LT + L N L+ + +S N
Sbjct: 220 -VRGPV--NVELTILKLQHNNLTD------------------TAWLLNYPGLVEVDLSYN 258
Query: 382 KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441
+L + + L +S N L ++ + L LDLS NH + +
Sbjct: 259 ELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315
Query: 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
LE LY++ NS+ L L+T ++K L LS N+
Sbjct: 316 QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 66/347 (19%), Positives = 122/347 (35%), Gaps = 42/347 (12%)
Query: 147 VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206
+ +L + I F +++ +++ + + LP + S +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266
E L++ ++ + A +Q L + N F +P L L +N+L +
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 267 GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPE 326
L IF L+ ++S+ N + I +
Sbjct: 132 ----------------------LPRGIFHNTPKLTTLSMSN---------NNL-ERIEDD 159
Query: 327 V-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTG 385
+ +L L N+LT I L + + N+ S+L + L S+N +
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN- 218
Query: 386 ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445
+ + LT +L L N LT + N LV++DLS N +
Sbjct: 219 VVRGPVNVELT---ILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273
Query: 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
LE LY+ N + ++ L + ++K LDLS N+L H+
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 87/404 (21%), Positives = 137/404 (33%), Gaps = 69/404 (17%)
Query: 91 FLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPES 150
F++P + +FL+ S+NL ++P N+ + A + P
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLT--------EMPVEAENVKSKTEYYNAWSEWERNAPPG 53
Query: 151 LGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210
G+ R ++ + + LEL L SLP +LE L
Sbjct: 54 NGEQREMAVSRLRDCLDR--------QAHELELNN---LGLS-SLPELPP----HLESLV 97
Query: 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIG 270
N+ T LP + +L + + +L S P L L N L
Sbjct: 98 ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEK---- 145
Query: 271 DLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNL 330
+ L N S L+ +D N LP +L G NQ+ PE++NL
Sbjct: 146 ----LPELQNSSFLKIIDVDNNSL-KKLPDLPPSLEF----IAAGNNQL--EELPELQNL 194
Query: 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN---VPSSLGNCQNLMLLSVSNNKLTGAL 387
L + N L +P L ++ N L N L + NN L L
Sbjct: 195 PFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TL 252
Query: 388 PPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE 447
P + L++ N LT +P +L L + + S P L
Sbjct: 253 PDLPPSLEA----LNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLY 300
Query: 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491
YL N + S+ + S++EL++S N L +P L
Sbjct: 301 YLNASSNEIR-SLC---DLPPSLEELNVSNNKLI-ELPALPPRL 339
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 84/402 (20%), Positives = 124/402 (30%), Gaps = 66/402 (16%)
Query: 92 LSPYVGNLSFLRFVNLASNNLHGEIPY------EHGQLP--PSIGNLSALQNIDIAGNRL 143
L +L L N L P + QL P + N S L+ ID+ N L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165
Query: 144 HSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSL 203
++P+ L + N + + N+ L IY N L+ LP
Sbjct: 166 -KKLPDLPPSLEFI---AAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPL--- 215
Query: 204 PNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNN 263
+LE + NN LP L N L + N + P+L LN N
Sbjct: 216 -SLESIVAG-NNILEELP-ELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNY 268
Query: 264 LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTI 323
L + + L+ + L NL N+I ++
Sbjct: 269 LTD-------LPELPQSLTFLDVSENIFS----GLSELPPNLYY----LNASSNEI-RSL 312
Query: 324 PPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN----VPSSLGNCQNLMLLSVS 379
+L LN + N+L +P L L N VP N + L V
Sbjct: 313 CDLPPSLEELN---VSNNKLIE-LPALPPRLERLIASFNHLAEVPELPQNLKQL---HVE 365
Query: 380 NNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVS 439
N L P + DL N +P NLK QL + N E P
Sbjct: 366 YNPLR-EFPDIPES------VEDLRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDI 414
Query: 440 LSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
++E L M V A T +++ ++
Sbjct: 415 PE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 1e-27
Identities = 61/374 (16%), Positives = 128/374 (34%), Gaps = 41/374 (10%)
Query: 129 NLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF-NISSLELIYPL 187
L+ + + ++ N + + S L L L++ F N+ +L ++
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSL--PHSLSNASNLQLLDLSLNHFSG-QV 244
+++ L + L +L +L + + ++ N L LDLS N +
Sbjct: 82 SSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 245 KIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIAN 304
F +L +L ++F N + +L+ + T L F L N + +
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT----LSFFSLAANSLYSRVSVDWGK 196
Query: 305 LSS-----------------TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPI 347
+ T+ + N I + + ++ G G ++ + P
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256
Query: 348 PHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNL 407
+ L +R L +S+ + +L ++ L +L+L+ N
Sbjct: 257 QNTFAGLARSSVR--------------HLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNK 301
Query: 408 LTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467
+ L NL L+LS N + + Y+ ++ N + L
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 468 KSIKELDLSRNNLS 481
+ ++ LDL N L+
Sbjct: 362 EKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 89/437 (20%), Positives = 155/437 (35%), Gaps = 50/437 (11%)
Query: 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESL 151
L P G L+ L+ ++ +SN + + + + + L +A N L+SRV
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIF-LVCEHELE---PLQGKT-LSFFSLAANSLYSRVSVDW 194
Query: 152 GQL------RSLSFLDISENAFS----GMFHSSIFNISSLELIYPLENRLEGSLPVNI-- 199
G+ L LD+S N ++ G F ++I + LI G NI
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 200 -------GFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP 252
G + ++ L + +L++L+L+ N + F L
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314
Query: 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312
NL LN N LG + +F K+ L N + + L L
Sbjct: 315 NLQVLNLSYNLLGE--LYSSNF----YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL- 367
Query: 313 TMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN------VPSS 366
+ N + + + ++ L N+L +P + L N +
Sbjct: 368 DLRDNAL-----TTIHFIPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDILYF 421
Query: 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-----GNLKN 421
L +L +L ++ N+ + Q L L N+L + TE+ L +
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 422 LVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
L L L+ N+ + P S T L L + N +T L +++ LD+SRN L
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL 539
Query: 482 GHIPEFLENLSFNKMNE 498
P+ +LS +
Sbjct: 540 APNPDVFVSLSVLDITH 556
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 8e-13
Identities = 56/309 (18%), Positives = 95/309 (30%), Gaps = 66/309 (21%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
+L + + L LS N+ F L L L G
Sbjct: 15 NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-------------- 60
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFG 337
+D F + L I +L S ++IY + P+ + L +L
Sbjct: 61 -------PLTIDKEAFRNLPNLRILDLGS---------SKIY-FLHPDAFQGLFHLFELR 103
Query: 338 LEYNQLTGPI--PHAIGELRNLQ---LRGN------VPSSLGNCQNLMLLSVSNNKLTGA 386
L + L+ + L+ L L N + S G +L + S+N++
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-L 162
Query: 387 LPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKN------LVQLDLSENHFSIEIP- 437
+ L L L L+ N L + + G N L LD+S N ++++I
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222
Query: 438 -----------VSLSACTTLEYLYMEGNSVTGSIPLALNTLK--SIKELDLSRNNLSGHI 484
SL + +++ L S++ LDLS +
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282
Query: 485 PEFLENLSF 493
E L
Sbjct: 283 SRVFETLKD 291
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-27
Identities = 78/419 (18%), Positives = 156/419 (37%), Gaps = 39/419 (9%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRS 156
+ L+ + L S+ ++ + +L +L+++D++ N L S G L S
Sbjct: 48 ACANLQVLILKSSRIN--------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99
Query: 157 LSFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
L +L++ N + + +S+F N+++L+ + + L +L +L ++ +
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI 275
SL + ++ L L L+ + ++I + L ++ L NL L
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219
Query: 276 AHLTNCSKLEAFGLDT--NIFGGVLPLSIANLSSTIILFT----MGLNQIYGTIPPEVKN 329
+ KL G F +L L L + + F GL + V
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279
Query: 330 LVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP 389
L + + + L ++ + + + ++V N+K+ +P
Sbjct: 280 LGKVETVTIRRLHIP-----------QFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327
Query: 390 QILGILTLSILLDLSGNLLTGSI---PTEVGNLKNLVQLDLSENHFSI--EIPVSLSACT 444
L LDLS NL+ G +L L LS+NH + L
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 445 TLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS---GHIPEFLE--NLSFNKMNE 498
L L + N+ +P + + ++ L+LS + IP+ LE ++S N ++
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS 445
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-25
Identities = 81/429 (18%), Positives = 143/429 (33%), Gaps = 46/429 (10%)
Query: 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI 138
L L + + S + G LS L+++NL N + + NL+ LQ + I
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLG-----VTSLFPNLTNLQTLRI 130
Query: 139 AGNRLHSRVPE-SLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
S + L SL+ L+I + S+ +I + + + L
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLE 189
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
L ++ L +R N L + S FN L L R
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249
Query: 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317
+ + +C+ + + V L + L +
Sbjct: 250 ILELSEV------------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQF 296
Query: 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNV--------PSS 366
++ + L + +E +++ L++L+ L N+ +
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356
Query: 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKNLVQ 424
G +L L +S N L ++ +LTL L LD+S N +P + +
Sbjct: 357 KGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414
Query: 425 LDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
L+LS + V TLE L + N++ S L L L +EL +SRN L +
Sbjct: 415 LNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSLFLPRL---QELYISRNKLK-TL 466
Query: 485 PE--FLENL 491
P+ L
Sbjct: 467 PDASLFPVL 475
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 67/408 (16%), Positives = 140/408 (34%), Gaps = 42/408 (10%)
Query: 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156
NL+ L+ + + + EI L++L ++I L + +SL +R
Sbjct: 120 PNLTNLQTLRIGNVETFSEIR------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG--SLPVNIGFSLPNLEDLSVRQN 214
+ L + + + + +SS+ + + L P+ + ++ L+ R +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 215 NYTG-------SLPHSLSNASNLQLLDLSLN---HFSGQVKIDFNRLPNLFRLNFGKNNL 264
T L + S ++ D +LN F+ + L + + + ++
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 265 GTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP 324
+ D + K++ ++ + V +L S L + N +
Sbjct: 294 PQFYL-FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL-DLSENLMVEEYL 351
Query: 325 PE---VKNLVNLNGFGLEYNQLT--GPIPHAIGELRNLQ---LRGN----VPSSLGNCQN 372
+L L N L + L+NL + N +P S +
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411
Query: 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHF 432
+ L++S+ + + I L + LD+S N L S L L +L +S N
Sbjct: 412 MRFLNLSSTGIR-VVKTCIPQTLEV---LDVSNNNLD-SFSL---FLPRLQELYISRNKL 463
Query: 433 SIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNL 480
+P S L + + N + + L S++++ L N
Sbjct: 464 K-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 66/360 (18%), Positives = 130/360 (36%), Gaps = 22/360 (6%)
Query: 129 NLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE 188
+ A D S +P L ++ LD+S N + + H + ++L+++
Sbjct: 3 SCDASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG-QVKID 247
+R+ ++ + +SL +LE L + N+ + S+L+ L+L N + V
Sbjct: 60 SRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
F L NL L G + I +DF + L + S+ ++
Sbjct: 119 FPNLTNLQTLRIGNVETFS-EIRRIDF----AGLTSLNELEIKALSLRNYQSQSLKSIRD 173
Query: 308 TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTG------PIPHAIGELRNLQLRG 361
L T+ L++ + L ++ L L P+ ++ L RG
Sbjct: 174 IHHL-TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 362 NVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKN 421
+V + + L LL L TL+ L D + +
Sbjct: 233 SVLTDESFNELLKLLRYILE-----LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
Query: 422 LVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
+ +L + + + ++ S ++ + +E + V LKS++ LDLS N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 45/307 (14%), Positives = 93/307 (30%), Gaps = 58/307 (18%)
Query: 201 FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260
S R ++T S+P L+ + ++ LDLS N + D NL L
Sbjct: 2 LSCDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY 320
+ + T ++ + F + L +LS N +
Sbjct: 59 SSRINT----------------------IEGDAFYSLGSLEHLDLSD---------NHLS 87
Query: 321 GTIPPEV-KNLVNLNGFGLEYNQLTG-PIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSV 378
++ L +L L N + L NLQ L +
Sbjct: 88 -SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT----------------LRI 130
Query: 379 SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438
N + + LT L++ L + +++++ L L + + + +
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190
Query: 439 SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNE 498
+++ YL + ++ L + + S L + SFN++ +
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-----VLTDESFNELLK 245
Query: 499 TINDFCH 505
+
Sbjct: 246 LLRYILE 252
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 4e-26
Identities = 77/400 (19%), Positives = 141/400 (35%), Gaps = 76/400 (19%)
Query: 83 LRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGN 141
+ Q+ + L+ + V ++ + +LP ++ + ++ +++
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--------KLPAALLDSFRQVELLNLNDL 85
Query: 142 RLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGF 201
++ + ++ L + NA + N+ L ++ N L SLP I
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144
Query: 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGK 261
+ P L LS+ NN + ++LQ L LS N + +D + +P+LF N
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSY 201
Query: 262 NNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG 321
N L T L +E N +++
Sbjct: 202 NLLST-----------LAIPIAVEELDASHN-----------SINV-------------- 225
Query: 322 TIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNN 381
+ V V L L++N LT + L N L+ + +S N
Sbjct: 226 -VRGPV--NVELTILKLQHNNLTD------------------TAWLLNYPGLVEVDLSYN 264
Query: 382 KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441
+L + + L +S N L ++ + L LDLS NH + +
Sbjct: 265 ELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321
Query: 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
LE LY++ NS+ L L+T ++K L LS N+
Sbjct: 322 QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 6e-23
Identities = 66/347 (19%), Positives = 122/347 (35%), Gaps = 42/347 (12%)
Query: 147 VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206
+ +L + I F +++ +++ + + LP + S +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77
Query: 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266
E L++ ++ + A +Q L + N F +P L L +N+L +
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 267 GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPE 326
L IF L+ ++S+ N + I +
Sbjct: 138 ----------------------LPRGIFHNTPKLTTLSMSN---------NNL-ERIEDD 165
Query: 327 V-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTG 385
+ +L L N+LT I L + + N+ S+L + L S+N +
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN- 224
Query: 386 ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445
+ + LT +L L N LT + N LV++DLS N +
Sbjct: 225 VVRGPVNVELT---ILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
LE LY+ N + ++ L + ++K LDLS N+L H+
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 6e-12
Identities = 57/305 (18%), Positives = 92/305 (30%), Gaps = 67/305 (21%)
Query: 213 QNNYTGSLPHSLSNASNLQ----LLDLSLNHFSGQVKIDFN--RLPNLFRLNFGKNNLGT 266
+ N P SNLQ D+ ++ + V F L N + F + +
Sbjct: 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65
Query: 267 GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPE 326
L + + + NL+ QI I
Sbjct: 66 ----------------------LPAALLDSFRQVELLNLND---------LQI-EEIDTY 93
Query: 327 V-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNV-----PSSLGNCQNLMLLS 377
+ + +N + PH + L L N N L LS
Sbjct: 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153
Query: 378 VSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIP 437
+SNN L + T L LS N LT + + + +L ++S N S
Sbjct: 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS---- 205
Query: 438 VSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLE-------N 490
+L+ +E L NS+ + + L L NNL+ L +
Sbjct: 206 -TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVD 260
Query: 491 LSFNK 495
LS+N+
Sbjct: 261 LSYNE 265
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 5e-25
Identities = 74/358 (20%), Positives = 114/358 (31%), Gaps = 71/358 (19%)
Query: 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLEN 189
+ +++ + L + +P+ L ++ L I +N +
Sbjct: 39 NNGNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLT--------------------- 74
Query: 190 RLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFN 249
SLP L L V N T SLP L + L H
Sbjct: 75 ----SLPALPP----ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL------ 119
Query: 250 RLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTI 309
L +L N L + +L + N LP + L
Sbjct: 120 -PSGLCKLWIFGNQLTS-------LPVLPPGLQELS---VSDNQLA-SLPALPSELCKLW 167
Query: 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSL-G 368
NQ+ ++P L L+ + NQL +P EL L N +SL
Sbjct: 168 AYN----NQL-TSLPMLPSGLQELS---VSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA 218
Query: 369 NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLS 428
L L VS N+LT +LP L L +SGN LT S+P L +L +
Sbjct: 219 LPSGLKELIVSGNRLT-SLPVLP-SELKE---LMVSGNRLT-SLPMLPSGLLSL---SVY 269
Query: 429 ENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPE 486
N + +P SL ++ + +EGN ++ AL + S
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 3e-21
Identities = 78/422 (18%), Positives = 127/422 (30%), Gaps = 92/422 (21%)
Query: 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNID 137
+T LV+ + ++ L L L ++ N L LP L L
Sbjct: 63 ITTLVIPDNNLT-SLPALPPELRTL---EVSGNQLT--------SLPVLPPGLLELSIFS 110
Query: 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV 197
L P L L I N + + L + +N+L SLP
Sbjct: 111 NPLTHL----PALPSGLCK---LWIFGNQLTS-LPVLPPGLQELSV---SDNQLA-SLPA 158
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
L L N T SLP S LQ L +S N + + + L L+
Sbjct: 159 LPS----ELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAY 209
Query: 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317
N N L + LP + L I+ N
Sbjct: 210 N---NRLTS-------------------------------LPALPSGLKELIVSG----N 231
Query: 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN----VPSSLGNCQNL 373
++ ++P L L + N+LT +P L +L + N +P SL + +
Sbjct: 232 RL-TSLPVLPSELKELM---VSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSE 286
Query: 374 MLLSVSNNKLTGALPPQILGILTLSILLD---LSGNLLTGSIPTEVGNLKNLVQLDLSEN 430
+++ N L+ Q L +T + + ++ S P E L L
Sbjct: 287 TTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345
Query: 431 HFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490
+ E N+ + L L+ L + + I +L
Sbjct: 346 REG-----EPAPADRWHMFGQEDNA--DAFSLFLDRLSETEN-FIKDAGFKAQISSWLAQ 397
Query: 491 LS 492
L+
Sbjct: 398 LA 399
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 36/143 (25%)
Query: 352 GELRNLQLRGNVPSSLGNCQ--NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT 409
+ R V + C +L+V + LT LP + +T L + N LT
Sbjct: 19 APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAHITT---LVIPDNNLT 74
Query: 410 GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKS 469
S+P L+ L ++S N + S+P+ L
Sbjct: 75 -SLPALPPELRTL---EVSGNQLT-------------------------SLPVLPPGLLE 105
Query: 470 IKELDLSRNNLSGHIPEFLENLS 492
+ +L +P L L
Sbjct: 106 LSIFSNPLTHLPA-LPSGLCKLW 127
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 70/303 (23%), Positives = 109/303 (35%), Gaps = 24/303 (7%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
++P I L + +N ++ +L+ L+L+ N S FN L N
Sbjct: 25 AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L L N L I F T S L + N +L +L + L
Sbjct: 82 LRTLGLRSNRLKL--IPLGVF----TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE- 134
Query: 314 MGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN-----VP 364
+G N + I L +L LE LT A+ L L LR
Sbjct: 135 VGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLV 423
S L +L +S+ + P L L L+ L ++ LT ++P +L L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL-SITHCNLT-AVPYLAVRHLVYLR 251
Query: 424 QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483
L+LS N S L L+ + + G + P A L ++ L++S N L+
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-T 310
Query: 484 IPE 486
+ E
Sbjct: 311 LEE 313
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-20
Identities = 68/362 (18%), Positives = 129/362 (35%), Gaps = 55/362 (15%)
Query: 122 QLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSL 181
+P I + + +D+ NR+ + + L L+++EN S + + N+ +L
Sbjct: 25 AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 182 ELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS 241
+ NRL+ +P+ + L NL L + +N L + + NL+ L++ N
Sbjct: 83 RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 242 GQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLS 301
F+ L +L +L K NL + + T + L
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTS----------------------IPTEALSHLHGLI 179
Query: 302 IANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLR 360
+ L I I K L L + + + NL
Sbjct: 180 VLRLRH---------LNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS- 228
Query: 361 GNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNL 419
LS+++ LT A+P + L L+LS N ++ +I + L
Sbjct: 229 ---------------LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHEL 271
Query: 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNN 479
L ++ L ++ P + L L + GN +T +++ +++ L L N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 480 LS 481
L+
Sbjct: 332 LA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 9e-15
Identities = 66/313 (21%), Positives = 107/313 (34%), Gaps = 60/313 (19%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRS 156
NL LR + L SN L +P + LS L +DI+ N++ + L +
Sbjct: 78 NLFNLRTLGLRSNRLK--------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216
L L++ +N + H + ++SLE + + L S+P L L L +R N
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188
Query: 217 TGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIA 276
+S L++L++S + + + NL L+ NL
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA---------- 238
Query: 277 HLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNG 335
+ ++ L NLS N I TI + L+ L
Sbjct: 239 ------------VPYLAVRHLVYLRFLNLSY---------NPI-STIEGSMLHELLRLQE 276
Query: 336 FGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395
L QL + P + L +L+VS N+LT L + +
Sbjct: 277 IQLVGGQLAV-VE---------------PYAFRGLNYLRVLNVSGNQLT-TLEESVFHSV 319
Query: 396 TLSILLDLSGNLL 408
L L N L
Sbjct: 320 GNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 315 GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNV-----PSS 366
+ IP E + L L N++ +L+ L N+ P +
Sbjct: 22 RFVAVPEGIPTETRLLD------LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQL 425
N NL L + +N+L +P + L+ LD+S N + + + +L NL L
Sbjct: 76 FNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSL 133
Query: 426 DLSENHFSIEIPV-SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
++ +N I + S +LE L +E ++T AL+ L + L L N++
Sbjct: 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 485 PEFLENLS 492
+ L
Sbjct: 193 DYSFKRLY 200
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 8e-23
Identities = 47/311 (15%), Positives = 99/311 (31%), Gaps = 64/311 (20%)
Query: 172 HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQ 231
H N + ++ ++ L+ ++ S N+++L + N + L+ + L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 232 LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291
LL+LS N +D L L L+ N + + + L
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE--------LLVGPSIETL------- 104
Query: 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHA 350
+ ++ N I + + N+ L N++T
Sbjct: 105 ------------HAAN---------NNI-SRVSCSRGQGKKNIY---LANNKITMLRDLD 139
Query: 351 IGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG 410
G +Q L + N++ ++ L+L N +
Sbjct: 140 EGCRSRVQ----------------YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182
Query: 411 SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSI 470
+ +V L LDLS N + + + + ++ + N + I AL +++
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239
Query: 471 KELDLSRNNLS 481
+ DL N
Sbjct: 240 EHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 5e-19
Identities = 54/389 (13%), Positives = 110/389 (28%), Gaps = 87/389 (22%)
Query: 123 LPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLE 182
+ N + + + + L + ++ LD+S N S + + + + LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 183 LIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG 242
L+ N L +L + SL L L + N L +++ L + N+ S
Sbjct: 62 LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112
Query: 243 QVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSI 302
++ +R + N + + L
Sbjct: 113 --RVSCSRGQGKKNIYLANNKITM------------------------------LRDLDE 140
Query: 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN 362
S + L+ L+ N++ N
Sbjct: 141 GCRS----------------------RVQYLD---LKLNEID---------------TVN 160
Query: 363 VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNL 422
+ L L++ N + + Q++ LDLS N L + E + +
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGV 216
Query: 423 VQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSG 482
+ L N I +L LE+ + GN K+ + +++ +
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKK 274
Query: 483 HIPEFLENLSFNKMNETINDFCHHKPKVF 511
+ E + + C P F
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPF 303
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 57/365 (15%), Positives = 109/365 (29%), Gaps = 73/365 (20%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIG-NLSALQNIDIAGNRLHSRVPESLGQLRS 156
N + + + ++L Q S+ + ++ +D++GN L L
Sbjct: 8 NGNRYKIEKVTDSSLK--------QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216
L L++S N + ++S+L + N ++ L P++E L NN
Sbjct: 60 LELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNI 111
Query: 217 TGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIA 276
+ + S + + L+ N + +D + L+ N + T + + A
Sbjct: 112 S-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELAA 166
Query: 277 HLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336
L NL N IY + +V L
Sbjct: 167 SSDTLEHL-------------------NLQY---------NFIY-DVKGQV-VFAKLKTL 196
Query: 337 GLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILT 396
L N+L + + + +S+ NNKL + +
Sbjct: 197 DLSSNKLA-----------------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238
Query: 397 LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSV 456
L DL GN KN +++ ++ T+ L G
Sbjct: 239 LEH-FDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYC 295
Query: 457 TGSIP 461
+P
Sbjct: 296 CEDLP 300
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 58/366 (15%), Positives = 116/366 (31%), Gaps = 67/366 (18%)
Query: 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQN 135
R + + S+ L+ + ++ ++L+ N L +I + + L+
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QIS------AADLAPFTKLEL 62
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
++++ N L+ L L +L LD++ N + S+E ++ N + +
Sbjct: 63 LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG-QVKIDFNRLPNL 254
+ +++ + N T S +Q LDL LN L
Sbjct: 115 SCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 255 FRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTM 314
LN N + + +KL+ L +N L+
Sbjct: 172 EHLNLQYNFIYD--------VKGQVVFAKLKTLDLSSN-----------KLAF------- 205
Query: 315 GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN----VPSSL 367
+ PE ++ + L N+L I A+ +NL+ LRGN
Sbjct: 206 --------MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256
Query: 368 GNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDL 427
+N + +V+ + L Q T+ L ++ + L
Sbjct: 257 FFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCC-----EDLPAPFADRLIAL 310
Query: 428 SENHFS 433
+H
Sbjct: 311 GHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 411 SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSI 470
+I N ++++ + + ++ L + GN ++ L +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 471 KELDLSRNNLSGHIPEFLE-------NLSFNKMNE 498
+ L+LS N L + +L+ N + E
Sbjct: 61 ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQE 94
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 3e-22
Identities = 60/402 (14%), Positives = 125/402 (31%), Gaps = 52/402 (12%)
Query: 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIG-NLSALQNIDIAGNRLHSRVPESLGQLR 155
N + + + ++L Q S+ + ++ +D++GN L L
Sbjct: 7 QNGNRYKIEKVTDSSLK--------QALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
L L++S N + ++S+L + N ++ L P++E L NN
Sbjct: 59 KLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNN 110
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI 275
+ + S + + L+ N + +D + L+ N + T + +
Sbjct: 111 IS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELA 165
Query: 276 AHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT-----MGLNQIYGTIPPEVKNL 330
A LE L N I ++ ++ + N++ + PE ++
Sbjct: 166 ASSDT---LEHLNLQYN--------FIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA 213
Query: 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN----VPSSLGNCQNLMLLSVSNNKL 383
+ L N+L I A+ +NL+ LRGN +N + +V+ +
Sbjct: 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
Query: 384 TGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSI----EIPVS 439
L Q T+ L L L + + + +
Sbjct: 273 KK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331
Query: 440 LSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
+ I ++ L+ + L
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 2e-21
Identities = 58/441 (13%), Positives = 123/441 (27%), Gaps = 42/441 (9%)
Query: 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNI 136
R + + S+ L+ + ++ ++L+ N L +I + + L+ +
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QIS------AADLAPFTKLELL 63
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
+++ N L+ L L +L LD++ N + S+E ++ N + +
Sbjct: 64 NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS 115
Query: 197 VNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG-QVKIDFNRLPNLF 255
+ +++ + N T S +Q LDL LN L
Sbjct: 116 CSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315
LN N + + +KL+ L +N + + + + +
Sbjct: 173 HLNLQYNFIYD--------VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS-LR 222
Query: 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAI--GELRNLQLRGNVPSSL-----G 368
N++ I ++ NL F L N R + L
Sbjct: 223 NNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281
Query: 369 NCQNLMLLSVSNNKLTGALPPQILGILTLSI----LLDLSGNLLTGSIPTEVGNLKNLVQ 424
C L P ++ L LL G+ + E N +
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQRE 340
Query: 425 LDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
+D + + I L + ++ + +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400
Query: 485 PEFLENLSFNKMNETINDFCH 505
E + + +
Sbjct: 401 HATEEQSPLQLLRAIVKRYEE 421
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 1e-20
Identities = 57/377 (15%), Positives = 108/377 (28%), Gaps = 33/377 (8%)
Query: 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYP 186
N + + + + L + ++ LD+S N S + + + + LEL+
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 187 LENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKI 246
N L +L + SL L L + N L +++ L + N+ S ++
Sbjct: 66 SSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS---RV 114
Query: 247 DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
+R + N + + DLD S+++ L N V +A S
Sbjct: 115 SCSRGQGKKNIYLANNKITM--LRDLDE----GCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN- 362
T+ + N IY + +V L L N+L + + LR N
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225
Query: 363 ---VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419
+ +L QNL + N + ++ +
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS----IPLALNTLKSIKELDL 475
L+ S GS + +E+D
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 476 SRNNLSGHIPEFLENLS 492
+ I +
Sbjct: 344 LKEQYRTVIDQVTLRKQ 360
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 1e-20
Identities = 43/290 (14%), Positives = 92/290 (31%), Gaps = 23/290 (7%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
++ N + ++ ++ + + N+ L+ N L I D
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADL---- 54
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
+KLE L +N+ L L +LS+ L + N + E+ ++
Sbjct: 55 APFTKLELLNLSSNVLYETLDLE--SLSTLRTLD-LNNNYV-----QELLVGPSIETLHA 106
Query: 339 EYNQLTGPIPHAIGELRNLQLRGNV-----PSSLGNCQNLMLLSVSNNKLTGALPPQILG 393
N ++ +N+ L N G + L + N++ ++
Sbjct: 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166
Query: 394 ILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEG 453
L+L N + + +V L LDLS N + + + + ++ +
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223
Query: 454 NSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDF 503
N + I AL ++++ DL N + +
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 4e-20
Identities = 75/434 (17%), Positives = 145/434 (33%), Gaps = 53/434 (12%)
Query: 64 CQWTGVTCGHRH--------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGE 115
C +R V + L SI L L+F+ +
Sbjct: 10 VIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69
Query: 116 IPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAF-SGMFHSS 174
I + LS+L + + N+ + L +L L +++ + +
Sbjct: 70 IR------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123
Query: 175 IF-NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLL 233
F ++SLE++ +N ++ P + ++ L + N L N
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183
Query: 234 DLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNI 293
L L+ L ++ G G + + L N
Sbjct: 184 LLRLSS---------ITLQDMNEYWLGWEKCGN-----------PFKNTSITTLDLSGNG 223
Query: 294 FGGVLPLSIANLSSTIILFTMGLNQIYGTIPP----EVKNLVNLNGFGLEYNQLTGPIPH 349
F + + + + ++ L+ Y K+ N GLE + +
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK----- 278
Query: 350 AIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT 409
+L ++ + S + +L L+++ N++ + LT + L+LS N L
Sbjct: 279 -TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 410 GSIPTEV-GNLKNLVQLDLSENHFSIEIPV-SLSACTTLEYLYMEGNSVTGSIPL-ALNT 466
SI + + NL L LDLS NH + S L+ L ++ N + S+P +
Sbjct: 337 -SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393
Query: 467 LKSIKELDLSRNNL 480
L S++++ L N
Sbjct: 394 LTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 61/363 (16%), Positives = 119/363 (32%), Gaps = 46/363 (12%)
Query: 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
++++D+S N+ + + +S + L+ + + + N L +L L + N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQV--KIDFNRLPNLFRLNFGKNNLGTGAIGDLD 273
+ + + +NL++L L+ + G V F L +L L NN+ I
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--IQPAS 148
Query: 274 FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSST---------IILFTMGLNQIYGTIP 324
F ++ L N + + N I L M +
Sbjct: 149 FFLNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 325 PEVKNLVNLNGFGLEYNQLTGPIPHAI------GELRNLQLRGNVPSSLGNCQN------ 372
++ L N + ++++L L +
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265
Query: 373 -----------LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLK 420
+ +S +K+ AL + T L L+ N + I L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLT 323
Query: 421 NLVQLDLSENHFSIEIPV-SLSACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRN 478
+L++L+LS+N I LE L + N + ++ + L ++KEL L N
Sbjct: 324 HLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381
Query: 479 NLS 481
L
Sbjct: 382 QLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 49/317 (15%), Positives = 94/317 (29%), Gaps = 49/317 (15%)
Query: 204 PNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKN 262
++ + + N+ S S +LQ L + ++ + F L +L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 263 NLGTGAIGDLDFIAHLT----NCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQ 318
G + +A+L L+ L N F + L + L N
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD---------NN 140
Query: 319 IYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAI------GELRNLQLRGNVPSSLG--- 368
I P N+ + L +N++ I L+L +
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 369 ----------NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGN 418
++ L +S N ++ + + + + L + +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259
Query: 419 --------------LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLAL 464
+ DLS++ + S T LE L + N + A
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319
Query: 465 NTLKSIKELDLSRNNLS 481
L + +L+LS+N L
Sbjct: 320 WGLTHLLKLNLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 43/237 (18%), Positives = 69/237 (29%), Gaps = 31/237 (13%)
Query: 289 LDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPI 347
L N + S + L L + I + L +L L+YNQ +
Sbjct: 37 LSLNSIAELNETSFSRLQDLQFL-KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-L 94
Query: 348 PHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGA-LPPQILGILTLSILLDLSGN 406
+ NL +L+++ L GA L LT +L L N
Sbjct: 95 E---------------TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 407 LLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLE----------YLYMEGNS 455
+ P N++ LDL+ N L M
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 456 VTGSIPLALNTLKSIKELDLSRNNLSGHIPE-FLENLSFNKMNETINDFCHHKPKVF 511
+ SI LDLS N + + F + ++ K+ I ++ F
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 71/420 (16%), Positives = 128/420 (30%), Gaps = 77/420 (18%)
Query: 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNI 136
+T L N SI + L+ L + SNN+ + + + L +
Sbjct: 43 TLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI-TTLD---------LSQNTNLTYL 90
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP 196
N+L + + L L++L+ N + + + L + N L +
Sbjct: 91 ACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLT-EID 143
Query: 197 VNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256
V+ L +L N L ++ + L LD S N + ++D ++ L R
Sbjct: 144 VS---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNR 195
Query: 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316
LN NN I LD +L +N L+
Sbjct: 196 LNCDTNN-----ITKLDL----NQNIQLTFLDCSSN-----------KLTE--------- 226
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN--VPSSLGNCQNLM 374
+V L L F N LT + +L L + L + L+
Sbjct: 227 --------IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278
Query: 375 LLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSI 434
+ + + T LLD +T + + LV L L+ +
Sbjct: 279 YFQAEGCRK---IKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE 332
Query: 435 EIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN 494
+ +S T L+ L + ++ + ++ + E L N S
Sbjct: 333 ---LDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLT 387
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 68/353 (19%), Positives = 126/353 (35%), Gaps = 41/353 (11%)
Query: 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENR 190
+ A + + S QL +L+ LD ++ + M + I ++ L + N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75
Query: 191 LEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNR 250
+ +L ++ NL L+ N T +L ++ + L L+ N + K+D ++
Sbjct: 76 IT-TLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQ 125
Query: 251 LPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTII 310
P L LN +N L +D +++ ++L LD ++ + L + +
Sbjct: 126 NPLLTYLNCARNTLTE-----ID----VSHNTQLTE--LDCHLNKKITKLDVTPQTQLTT 174
Query: 311 LFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSL--G 368
L N+I +V LN + N +T + +L L N + +
Sbjct: 175 L-DCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVT 230
Query: 369 NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLS 428
L S N LT L L LT L L I + + L+
Sbjct: 231 PLTQLTYFDCSVNPLT-ELDVSTLSKLTT---LHCIQTDLL-EID--LTHNTQLIYFQAE 283
Query: 429 ENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
E+ ++ T L L + +T L L+ + L L+ L+
Sbjct: 284 GCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT 331
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 56/321 (17%), Positives = 90/321 (28%), Gaps = 51/321 (15%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQ---------- 243
+ N F N + S + L LD + +
Sbjct: 8 TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLT 67
Query: 244 ---------VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL------------TNCS 282
+D ++ NL L N L + L + +L +
Sbjct: 68 KLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNP 127
Query: 283 KLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQ 342
L N L+ ++S L + + +V L +N+
Sbjct: 128 LLTYLNCARN------TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181
Query: 343 LTGPIPHAIGELRNLQLRGNVPSSL--GNCQNLMLLSVSNNKLTGALPPQILGILTLSIL 400
+T L L N + L L L S+NKLT + + LT
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EID---VTPLTQLTY 237
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
D S N LT + V L L L + + L+ T L Y EG +
Sbjct: 238 FDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKEL 291
Query: 461 PLALNTLKSIKELDLSRNNLS 481
+ NT + LD ++
Sbjct: 292 DVTHNT--QLYLLDCQAAGIT 310
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 54/345 (15%), Positives = 98/345 (28%), Gaps = 78/345 (22%)
Query: 93 SPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLG 152
V + L ++ + N + + L ++ N + L
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITEL----------DVSQNKLLNRLNCDTNNITK---LDLN 209
Query: 153 QLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVR 212
Q L+FLD S N + + ++ L N L L V+ +L L L
Sbjct: 210 QNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCI 262
Query: 213 QNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDL 272
Q + + N QL+ ++D L+ L+ I +L
Sbjct: 263 QTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG-----ITEL 312
Query: 273 DFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVN 332
D + KL L+ + L V +
Sbjct: 313 DL----SQNPKLVYLYLNNT--------ELTELD--------------------VSHNTK 340
Query: 333 LNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQIL 392
L + + + N + G + +++NN LT A+ P
Sbjct: 341 LKSLSCVNAHIQ-----DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD-- 393
Query: 393 GILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIP 437
LLD GN + I G + + ++ + S + P
Sbjct: 394 -------LLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNP 429
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 58/300 (19%), Positives = 94/300 (31%), Gaps = 30/300 (10%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
+P ++ P+ L ++ N T N NL L L N S F L
Sbjct: 45 KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L RL KN L L+ + N V L+ I++
Sbjct: 102 LERLYLSKNQLKELPEKMP---------KTLQELRVHENEITKVRKSVFNGLNQMIVVE- 151
Query: 314 MGLNQIY-GTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN-----VPSS 366
+G N + I + + L+ + +T L L L GN +S
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211
Query: 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLD 426
L NL L +S N ++ A+ L L L+ N L +P + + K + +
Sbjct: 212 LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269
Query: 427 LSENHFS------IEIPVSLSACTTLEYLYMEGNSVTGSI--PLALNTLKSIKELDLSRN 478
L N+ S P + + + + N V P + + L
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 12/183 (6%)
Query: 317 NQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNV-----PSSLGNC 370
N+I I P LV L L NQL L+ L++ N S
Sbjct: 86 NKI-SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 144
Query: 371 QNLMLLSVSNNKLT-GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSE 429
++++ + N L + + + ++ +T +IP G +L +L L
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDG 201
Query: 430 NHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLE 489
N + SL L L + NS++ +L ++EL L+ N L +P L
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 490 NLS 492
+
Sbjct: 261 DHK 263
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 58/386 (15%), Positives = 106/386 (27%), Gaps = 106/386 (27%)
Query: 64 CQWTGVTCGHRH---------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHG 114
C V C L L+N I NL L + L +N +
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS- 89
Query: 115 EIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174
+I P + L L+ + ++ N+L +PE + ++L L + EN
Sbjct: 90 KIS------PGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHEN--------- 131
Query: 175 IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSL--PHSLSNASNLQL 232
I+ + + L + + + N S + L
Sbjct: 132 --EITKVR---------KSVFN-----GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 233 LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292
+ ++ + + I P+L L+ N + + L N +KL
Sbjct: 176 IRIADTNIT---TIPQGLPPSLTELHLDGNKITK--VDAASL-KGLNNLAKL-------- 221
Query: 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAI 351
LS N I + N +L L N+L
Sbjct: 222 -----------GLSF---------NSI-SAVDNGSLANTPHLRELHLNNNKLV------- 253
Query: 352 GELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT-----GALPPQILGILTLSILLDLSGN 406
VP L + + + ++ + NN ++ PP + L N
Sbjct: 254 ----------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303
Query: 407 LLT-GSIPTEV-GNLKNLVQLDLSEN 430
+ I + + L
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
+ S L +P ++ + LDL N + L L + N ++
Sbjct: 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 461 PLALNTLKSIKELDLSRNNLSGHIPEFL 488
P A L ++ L LS+N L +PE +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEKM 119
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 8e-18
Identities = 64/385 (16%), Positives = 130/385 (33%), Gaps = 32/385 (8%)
Query: 126 SIGNLSALQNIDIAGNRLHS-RVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELI 184
S L+++D++ N + + + G + L FL +S I +++ +++
Sbjct: 85 SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Query: 185 YPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQV 244
L L + S+ T H + + S + +L L++ +
Sbjct: 145 LVLGETY---GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201
Query: 245 KIDFNRLPNLFRLNFGKN------NLGTGAIGDLDFIA--HLTNCSKLEAFGLDTNIFGG 296
+ + N L FI L + + F + G
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261
Query: 297 VLPLSIANLSST----IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTG---PIPH 349
L + S T + + + + + N+N + P
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321
Query: 350 AIGELRNLQLRGN-----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--LD 402
I +L N V + G+ L L + N+L L + L LD
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD 380
Query: 403 LSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP 461
+S N ++ K+L+ L++S N + I L ++ L + N + SIP
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437
Query: 462 LALNTLKSIKELDLSRNNLSGHIPE 486
+ L++++EL+++ N L +P+
Sbjct: 438 KQVVKLEALQELNVASNQLK-SVPD 461
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 71/415 (17%), Positives = 144/415 (34%), Gaps = 51/415 (12%)
Query: 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNI 136
T L + I + + +LS LR + ++ N + L S+ L+ +
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--------YLDISVFKFNQELEYL 74
Query: 137 DIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEGSL 195
D++ N+L S +L LD+S NAF + F N+S L+ + LE S
Sbjct: 75 DLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSN--ASNLQLLDLSLNHFSGQVKIDFNRLPN 253
+ I + L + + P L + +L ++ + F + + + N
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L N + + CS + + L++ N+ +T F
Sbjct: 192 LELSN-------------IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238
Query: 314 MGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNL 373
L ++ T + F + +L G + + L+ L
Sbjct: 239 RILQLVWHT---------TVWYFSISNVKLQGQLDFRDFDYSGTSLK-----------AL 278
Query: 374 MLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFS 433
+ V ++ I I + + + + + + + LD S N +
Sbjct: 279 SIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 434 IEIPVSLSACTTLEYLYMEGNSVT--GSIPLALNTLKSIKELDLSRNNLSGHIPE 486
+ + T LE L ++ N + I +KS+++LD+S+N++S +
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 6e-14
Identities = 61/364 (16%), Positives = 126/364 (34%), Gaps = 25/364 (6%)
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
+D + N L VP+ L + + L+IS+N S ++ S I ++S L ++ NR++ L
Sbjct: 5 VDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YL 60
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHF-SGQVKIDFNRLPNL 254
+++ LE L + N H N L+ LDLS N F + + +F + L
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 255 FRLNFGKNNLGTGAIGDLDFIAHLT-------NCSKLEAFGLDTNIFGGVLPLSIANLSS 307
L +L ++ + + + E + L +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 308 TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIG---ELRNLQLRGNVP 364
+ + + + +K ++ N + L + L N++ N
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 365 SSLGNCQ---NLMLLSVSNNKLTGALPPQILGILTLSI----LLDLSGNLLTGSIPTEVG 417
+ + S+SN KL G L + S+ + + ++
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477
N+ + + + + + S + +L N +T ++ L ++ L L
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357
Query: 478 NNLS 481
N L
Sbjct: 358 NQLK 361
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 48/364 (13%), Positives = 112/364 (30%), Gaps = 36/364 (9%)
Query: 93 SPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLG 152
V ++ L + E + S L + H + S+
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES-LHIVFPTNKEFHFILDVSVK 187
Query: 153 QLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVN--------IGFSLP 204
+ +L +I + ++ L+ L N ++
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247
Query: 205 NLEDLSVRQNNYTGSLPHSLSNASN-----LQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259
+ S+ G L + S L + + + F + N+ NF
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQI 319
+ + S N+ + + +L+ L + +NQ+
Sbjct: 308 TVSGTRMVHMLCPS------KISPFLHLDFSNNLLTDTVFENCGHLTELETL-ILQMNQL 360
Query: 320 YGTIPPEV---KNLVNLNGFGLEYNQLTGPIPHAI----GELRNLQLRGN-VPSSLGNC- 370
+ + +L + N ++ L +L + N + ++ C
Sbjct: 361 -KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 371 -QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLS 428
+ +L + +NK+ ++P Q++ + L L +++ N L S+P + L +L ++ L
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQEL-NVASNQLK-SVPDGIFDRLTSLQKIWLH 476
Query: 429 ENHF 432
N +
Sbjct: 477 TNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSI 434
L++S N ++ L + L+ +L +S N + + V + L LDLS N
Sbjct: 26 LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK 83
Query: 435 EIPVSLSACTTLEYLYMEGNSVTGSIPLA--LNTLKSIKELDLSRNNLSGHIPEFLENLS 492
+S L++L + N+ ++P+ + +K L LS +L + +L+
Sbjct: 84 ---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 493 FNKMNETIND 502
+K+ + +
Sbjct: 140 ISKVLLVLGE 149
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT 457
L+D S N L +P ++ + L++S+N+ S + + + L L + N +
Sbjct: 2 EFLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58
Query: 458 GSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSF 493
+ ++ LDLS N L NL
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKH 94
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 55/300 (18%), Positives = 96/300 (32%), Gaps = 31/300 (10%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
++P I P+ L ++ N+ + +L L L N S + F+ L
Sbjct: 47 AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L +L KN+L S L + N V + L + +
Sbjct: 104 LQKLYISKNHLVEIPPNLP---------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE- 153
Query: 314 MGLNQIYGT-IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNV-----PSSL 367
MG N + + P + + LN + +LTG L L L N L
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL 213
Query: 368 GNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDL 427
L L + +N++ + L L L L N L+ +P + +LK L + L
Sbjct: 214 LRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271
Query: 428 SENHFSIEIPVS-------LSACTTLEYLYMEGNSVTGSI--PLALNTLKSIKELDLSRN 478
N+ + ++ V+ + + N V P + +
Sbjct: 272 HTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 15/184 (8%)
Query: 317 NQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNV-----PSSLGNC 370
N+I I + L L + N L P+ L L++ N
Sbjct: 88 NKI-SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGL 146
Query: 371 QNLMLLSVSNNKLT-GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSE 429
+N+ + + N L P L L+ L +S LT IP + L +L L
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYL-RISEAKLT-GIPK--DLPETLNELHLDH 202
Query: 430 NHFSIEIPV-SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFL 488
N I + L + L L + N + +L+ L +++EL L N LS +P L
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260
Query: 489 ENLS 492
+L
Sbjct: 261 PDLK 264
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 52/338 (15%), Positives = 101/338 (29%), Gaps = 72/338 (21%)
Query: 102 LRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLD 161
++L +N++ E+ L L + + N++ ++ LR L L
Sbjct: 56 TTLLDLQNNDIS-ELR------KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108
Query: 162 ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT-GSL 220
IS+N ++ SSL + +NR+ +P + L N+ + + N
Sbjct: 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGF 164
Query: 221 PHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTN 280
+ L L +S + I + L L+ N + I D +
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQA--IELEDL-LRYSK 218
Query: 281 CSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLE 339
+L L NQI I L L L+
Sbjct: 219 LYRL-------------------GLGH---------NQI-RMIENGSLSFLPTLRELHLD 249
Query: 340 YNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT----GALPPQILGIL 395
N+L+ VP+ L + + L ++ + N +T P G+
Sbjct: 250 NNKLS-----------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292
Query: 396 TLSI-LLDLSGNLLT-GSIPTEV-GNLKNLVQLDLSEN 430
+ L N + + + + + +
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 62/344 (18%), Positives = 99/344 (28%), Gaps = 70/344 (20%)
Query: 64 CQWTGVTCGHRH---------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHG 114
C V C T L L+N I L L + L +N +
Sbjct: 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS- 91
Query: 115 EIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174
+I + L LQ + I+ N L +P +L SL L I +N +
Sbjct: 92 KIH------EKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGV 142
Query: 175 IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234
+ ++ I N LE S F L L + + T +P L L L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELH 199
Query: 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIF 294
L N D R L+RL G N + ++
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM----------------------IENGSL 237
Query: 295 GGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT---------G 345
+ L +L + N++ +P + +L L L N +T
Sbjct: 238 SFLPTLRELHLDN---------NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 346 PIPHAIGELRNLQLRGNV-------PSSLGNCQNLMLLSVSNNK 382
+ L N P++ + + + N K
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
+ S L ++P E+ + LDL N S L L + N ++
Sbjct: 38 VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94
Query: 461 PLALNTLKSIKELDLSRNNLSGHIPEFL 488
A + L+ +++L +S+N+L IP L
Sbjct: 95 EKAFSPLRKLQKLYISKNHLV-EIPPNL 121
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 2e-17
Identities = 67/400 (16%), Positives = 109/400 (27%), Gaps = 112/400 (28%)
Query: 99 LSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLS 158
L +L+ N+ + I + + N S + E L + S
Sbjct: 5 LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFS 62
Query: 159 FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG 218
L ++ S SLP N+ P + L + QN
Sbjct: 63 ELQLNRLNLS-------------------------SLPDNLP---PQITVLEITQNALI- 93
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
SLP ++ L+ LD N + LP L
Sbjct: 94 SLPELPAS---LEYLDACDNRL--------STLPEL-----------------------P 119
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
+ L ++ + NQ+ +P L +N
Sbjct: 120 ASLKHL-------------------DVDN---------NQL-TMLPELPALLEYIN---A 147
Query: 339 EYNQLTGPIPHAIGELRNLQLRGN----VPSSLGNCQNLMLLSVSNNKLTGALPPQI--- 391
+ NQLT +P L L +R N +P + + L + S N L +LP
Sbjct: 148 DNNQLTM-LPELPTSLEVLSVRNNQLTFLPELPESLEALDV---STNLLE-SLPAVPVRN 202
Query: 392 LGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451
I N +T IP + +L + L +N S I SLS T +
Sbjct: 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Query: 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491
+ S D + + +
Sbjct: 262 PRIYFSMSDG--QQNTLHRPLADAVTAWFPENKQSDVSQI 299
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 8e-17
Identities = 62/307 (20%), Positives = 102/307 (33%), Gaps = 66/307 (21%)
Query: 195 LPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK-IDFNRLPN 253
LP+N FSL N +G+ S + L + + V + +
Sbjct: 5 LPINNNFSLSQNS----FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L + NL + LP NL I +
Sbjct: 61 FSELQLNRLNLSS-------------------------------LP---DNLPPQITVLE 86
Query: 314 MGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN----VPSSLGN 369
+ N + ++P +L L+ N+L+ +P L++L + N +P
Sbjct: 87 ITQNAL-ISLPELPASLEYLD---ACDNRLST-LPELPASLKHLDVDNNQLTMLPELPAL 141
Query: 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSE 429
L ++ NN+LT LP L + L + N LT +P +L+ LD+S
Sbjct: 142 ---LEYINADNNQLT-MLPELPTS-LEV---LSVRNNQLT-FLPELPESLE---ALDVST 189
Query: 430 NHFSIEIPVSLSACTTLE----YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485
N +P E + N +T IP + +L + L N LS I
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247
Query: 486 EFLENLS 492
E L +
Sbjct: 248 ESLSQQT 254
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-16
Identities = 70/441 (15%), Positives = 131/441 (29%), Gaps = 63/441 (14%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRS 156
LS LR + L+ N + L + L+ +D++ NRL + S + S
Sbjct: 74 FLSELRVLRLSHNRIR--------SLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMAS 122
Query: 157 LSFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
L LD+S N F + F N++ L + + L + L L +
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSY 181
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLD-- 273
+ N +L L + S + L L L L
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241
Query: 274 --------------------------FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
+ +E + + S
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301
Query: 308 TIILFTM----GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTG---PIPHAIGELRNLQLR 360
T + M + +N L + P + L
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361
Query: 361 GN-----VPSSLGNCQNLMLLSVSNNKLTGALPPQ--ILGILTLSILLDLSGNLLT-GSI 412
N V + L L + N L + ++ LD+S N L +
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420
Query: 413 PTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKE 472
++++ L+LS N + + L ++ L + N + SIP + L++++E
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477
Query: 473 LDLSRNNLSGHIPE-FLENLS 492
L+++ N L +P+ + L+
Sbjct: 478 LNVASNQLK-SVPDGVFDRLT 497
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 4e-13
Identities = 62/357 (17%), Positives = 121/357 (33%), Gaps = 22/357 (6%)
Query: 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG 200
NR + VP+ L L +S+N+ S + I +S L ++ NR+ SL ++
Sbjct: 40 NRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVF 96
Query: 201 FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHF-SGQVKIDFNRLPNLFRLNF 259
+LE L V N ++ ++L+ LDLS N F V +F L L L
Sbjct: 97 LFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153
Query: 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS---STIILFTMGL 316
+ + + L ++ + + + L LF++ +
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLML- 375
N + + + LN + L N+ L+ + + +
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273
Query: 376 -------LSVSNNKLTGALPPQILGILTLSI----LLDLSGNLLTGSIPTEVGNLKNLVQ 424
L++ N +T + + ++ + + + S +
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333
Query: 425 LDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
LS + V + ++ +L N T S+ +TLK ++ L L RN L
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 6e-12
Identities = 66/386 (17%), Positives = 124/386 (32%), Gaps = 36/386 (9%)
Query: 122 QLPPS-IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180
+L I LS L+ + ++ NR+ S + L +LD+S N + S ++S
Sbjct: 66 ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMAS 122
Query: 181 LELIYPLENRLEGSLPVNIGFS-LPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH 239
L + N + LPV F L L L + + L +L + L L
Sbjct: 123 LRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVS 180
Query: 240 FSGQ-VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298
+ + + + ++PN L+ + ++ + L + L+ + N
Sbjct: 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH---LQLSNIKLNDENCQR 237
Query: 299 PLSIANLSSTIILFT-MGLNQIYGTIPPEVKNLVNLNGFGLEY-----NQLTGPIPHAIG 352
++ + + + L I T VK +EY +T I
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297
Query: 353 ELRNLQLRGNVPSSLGNCQ-------------NLMLLSVSNNKLTGALPPQILGILTLSI 399
L+ + + N + + +S + + +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFT 356
Query: 400 LLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS 459
L+ + N+ T S+ LK L L L N + L S+
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSL 415
Query: 460 IPLALNTL----KSIKELDLSRNNLS 481
A + +SI L+LS N L+
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLT 441
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 46/348 (13%), Positives = 106/348 (30%), Gaps = 32/348 (9%)
Query: 104 FVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDIS 163
++L S ++ G ++ +L N + S QL ++ D +
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234
Query: 164 ENAFSGMFHSSIFNISSLEL-IYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG---- 218
+ L + + +E + S+ + F +E L++ T
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294
Query: 219 -SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277
+S + +L + + F + ++ + ++ +
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP---- 350
Query: 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFG 337
+ S N+F + + L L N + N++
Sbjct: 351 --SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR-NGL-KNFFKVALMTKNMSSLE 406
Query: 338 LEYNQLT----GPIPHAIGELRNL--------QLRGNVPSSLGNCQNLMLLSVSNNKLTG 385
L ++ L G+V L + +L + NN++
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463
Query: 386 ALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHF 432
++P + + L L +++ N L S+P V L +L + L +N +
Sbjct: 464 SIPKDVTHLQALQEL-NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 4e-15
Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 51/265 (19%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
S+P + S+ L+L N F++L L +L+ N L
Sbjct: 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGT 77
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
T+ L +LS N + T+ L L
Sbjct: 78 TSLKYL-------------------DLSF---------NGVI-TMSSNFLGLEQLEHLDF 108
Query: 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLS 398
+++ L S + +NL+ L +S+ I L+
Sbjct: 109 QHSNLKQMSE---------------FSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSL 152
Query: 399 ILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTT-LEYLYMEGNSV 456
+L ++GN + ++ L+NL LDLS+ ++ + + L+ L M N+
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211
Query: 457 TGSIPLALNTLKSIKELDLSRNNLS 481
L S++ LD S N++
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 57/335 (17%), Positives = 101/335 (30%), Gaps = 87/335 (25%)
Query: 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDI 162
+ S L +P I S+ +++ N+L S +L L+ L +
Sbjct: 10 TEIRCNSKGLT--------SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59
Query: 163 SENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH 222
S N +S F +L+ L + N ++
Sbjct: 60 SSN-----------GLSFK------------GCCSQSDFGTTSLKYLDLSFNGVI-TMSS 95
Query: 223 SLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNC 281
+ L+ LD ++ + F L NL L+ +
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--------------- 140
Query: 282 SKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEY 340
IF G+ L + ++ N P++ L NL L
Sbjct: 141 -------AFNGIFNGLSSLEVLKMAG---------NSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 341 NQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL 400
QL P A L +LQ+ L++S+N +L L +
Sbjct: 185 CQLEQLSPTAFNSLSSLQV----------------LNMSHNNFF-SLDTFPYKCLNSLQV 227
Query: 401 LDLSGNLLTGSIPTEV--GNLKNLVQLDLSENHFS 433
LD S N + + + +L L+L++N F+
Sbjct: 228 LDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 21/184 (11%)
Query: 315 GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN-------VP 364
GL + IP L LE N+L +L L L N
Sbjct: 18 GLTSVPTGIPSSATRLE------LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLV 423
S +L L +S N + + LG+ L L D + L V +L+NL+
Sbjct: 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL-DFQHSNLKQMSEFSVFLSLRNLI 129
Query: 424 QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI-PLALNTLKSIKELDLSRNNLSG 482
LD+S H + + ++LE L M GNS + P L+++ LDLS+ L
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188
Query: 483 HIPE 486
+
Sbjct: 189 QLSP 192
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
L L ++ +NL ++ +L L +DI+ L SL
Sbjct: 99 GLEQLEHLDFQHSNLK-QMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152
Query: 158 SFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216
L ++ N+F F IF + +L + + +LE L SL +L+ L++ NN+
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211
Query: 217 TGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP-NLFRLNFGKNNL 264
++LQ+LD SLNH K + P +L LN +N+
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-09
Identities = 54/270 (20%), Positives = 90/270 (33%), Gaps = 50/270 (18%)
Query: 102 LRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSR--VPESLGQLRSLS 158
+ L SN L LP + L+ L + ++ N L + +S SL
Sbjct: 30 ATRLELESNKLQ--------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81
Query: 159 FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG 218
+LD+S N M S+ + LE + + L+ ++ SL NL L + +
Sbjct: 82 YLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277
+ + S+L++L ++ N F D F L NL L+ + L
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ----------- 189
Query: 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGF 336
L F + L + N+S N ++ K L +L
Sbjct: 190 -----------LSPTAFNSLSSLQVLNMSH---------NNF-FSLDTFPYKCLNSLQVL 228
Query: 337 GLEYNQLT----GPIPHAIGELRNLQLRGN 362
N + + H L L L N
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 9e-15
Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID---FNR 250
S+P + ++ L + N T L NLQ L L+ N + I+ F+
Sbjct: 45 SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSS 98
Query: 251 LPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTII 310
L +L L+ N L + S L L N + + S+ + + +
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFK------PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152
Query: 311 LFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGN 369
+ +G + I + L L ++ + L P SL +
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YE---------------PKSLKS 196
Query: 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV--------GNLKN 421
QN+ L + + L + + + L+L L +E+
Sbjct: 197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255
Query: 422 LVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNL 480
+ +++ ++ L+ + L L N + + L S++++ L N
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 5e-14
Identities = 44/271 (16%), Positives = 96/271 (35%), Gaps = 39/271 (14%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRS 156
L+ + L SN ++ + +L +L+++D++ N L + L S
Sbjct: 74 RCVNLQALVLTSNGIN--------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 157 LSFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
L+FL++ N + + +S+F +++ L+++ + L LE+L + ++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFI 275
P SL + N+ L L + ++I + ++ L +L T +L
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL--- 242
Query: 276 AHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNG 335
+TN ++ ++ + + + L
Sbjct: 243 -----------STGETNSLIKKFTFRNVKITD---------ESLF-QVMKLLNQISGLLE 281
Query: 336 FGLEYNQLTGPIPHAI----GELRNLQLRGN 362
NQL +P I L+ + L N
Sbjct: 282 LEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 46/305 (15%)
Query: 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENR 190
A++++D++ NR+ L + +L L ++ N +
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---------------------- 89
Query: 191 LEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG-QVKIDFN 249
++ + SL +LE L + N + S+L L+L N + F+
Sbjct: 90 ---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146
Query: 250 RLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTI 309
L L L G + T I DF A LT +LE +D + P S+ ++ +
Sbjct: 147 HLTKLQILRVGNMDTFT-KIQRKDF-AGLTFLEELE---IDASDLQSYEPKSLKSIQNVS 201
Query: 310 ILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG 368
L + + Q + ++ L L +L +SL
Sbjct: 202 HL-ILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT--------FHFSELSTGETNSLI 251
Query: 369 NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDL 427
+ +++ L + + I L L+ S N L S+P + L +L ++ L
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLE-LEFSRNQLK-SVPDGIFDRLTSLQKIWL 308
Query: 428 SENHF 432
N +
Sbjct: 309 HTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 48/284 (16%), Positives = 85/284 (29%), Gaps = 57/284 (20%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
S+P L+ ++ LDLS N + D R NL L N + T
Sbjct: 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT------------ 90
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFG 337
++ + F + L +LS N + + K L +L
Sbjct: 91 ----------IEEDSFSSLGSLEHLDLSY---------NYL-SNLSSSWFKPLSSLTFLN 130
Query: 338 LEYNQLT----GPIPHAIGELRNLQLRGNV------PSSLGNCQNLMLLSVSNNKLTGAL 387
L N + + +L+ L++ L L + + L +
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SY 189
Query: 388 PPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSA---- 442
P+ L + L L + ++ L+L + LS
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248
Query: 443 ----CTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSG 482
T + + S+ + LN + + EL+ SRN L
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 11/203 (5%)
Query: 303 ANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--- 358
+ L+ + + N+I I + VNL L N + + L +L+
Sbjct: 48 SGLTEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106
Query: 359 LRGN-----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP 413
L N S +L L++ N + LT +L + I
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 414 TEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKE 472
+ L L +L++ + P SL + + +L + + + ++ S++
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 473 LDLSRNNLSGHIPEFLENLSFNK 495
L+L +L L N
Sbjct: 227 LELRDTDLDTFHFSELSTGETNS 249
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 35/196 (17%), Positives = 74/196 (37%), Gaps = 24/196 (12%)
Query: 317 NQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAI----GELRNLQLRGNVPSSLG--- 368
N I TI + +L +L L YN L+ + + L L L GN +LG
Sbjct: 86 NGI-NTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETS 143
Query: 369 ---NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQ 424
+ L +L V N + + LT L++ + L S + +++N+
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSH 202
Query: 425 LDLSENHFSIEIPVSLSACTTLEYLYMEGN--------SVTGSIPLALNTLKSIKELDLS 476
L L + + + + +++E L + ++ +L + + + ++
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 477 RNNLSGHIPEFLENLS 492
+L + + L +S
Sbjct: 263 DESLF-QVMKLLNQIS 277
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 15/150 (10%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
L+FL + + +++L P S+ ++ + ++ + + + + S+
Sbjct: 172 GLTFLEELEIDASDLQ-SYE------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224
Query: 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRL------EGSLPVNIGFSLPNLEDLSV 211
L++ + S + + LI R + + + L +L
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284
Query: 212 RQNNYTGSLPHS-LSNASNLQLLDLSLNHF 240
+N S+P ++LQ + L N +
Sbjct: 285 SRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 54/264 (20%), Positives = 86/264 (32%), Gaps = 53/264 (20%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
++P + + Q + L N S F NL L N L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR------------ 70
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFG 337
+D F G+ L +LS N ++ P L L+
Sbjct: 71 ----------IDAAAFTGLALLEQLDLSD---------NAQLRSVDPATFHGLGRLHTLH 111
Query: 338 LEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTL 397
L+ L + P L L + +N L ALP L
Sbjct: 112 LDRCGLQE-LG---------------PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN 154
Query: 398 SILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSV 456
L L GN ++ S+P L +L +L L +N + P + L LY+ N++
Sbjct: 155 LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 457 TGSIPLALNTLKSIKELDLSRNNL 480
+ AL L++++ L L+ N
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 45/190 (23%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 303 ANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--- 358
+ + + N+I +P + NL L N L A L L+
Sbjct: 28 VGIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86
Query: 359 LRGNV------PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSI 412
L N P++ L L + L L P + L L L N L ++
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-AL 144
Query: 413 PTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
P + +L NL L L N S + +L+ L + N V P A L +
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 472 ELDLSRNNLS 481
L L NNLS
Sbjct: 205 TLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 16/188 (8%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGN-RLHSRVPESLGQLR 155
L + L SN L ++ + L+ L+ +D++ N +L S P + L
Sbjct: 54 ACRNLTILWLHSNVL--------ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 156 SLSFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQN 214
L L + +F +++L+ +Y +N L+ +LP + L NL L + N
Sbjct: 106 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 163
Query: 215 NYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT---GAIGD 271
+ + +L L L N + F L L L NNL A+
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Query: 272 LDFIAHLT 279
L + +L
Sbjct: 224 LRALQYLR 231
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRS 156
L L ++L L +L P + L+ALQ + + N L + ++ L +
Sbjct: 103 GLGRLHTLHLDRCGLQ--------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216
L+ L + N S + + + SL+ + +NR+ + + L L L + NN
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213
Query: 217 TGSLPHS-LSNASNLQLLDLSLN 238
+ +LP L+ LQ L L+ N
Sbjct: 214 S-ALPTEALAPLRALQYLRLNDN 235
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 16/208 (7%)
Query: 289 LDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPI 347
L N + + +L +L +G N I I L +LN L N LT
Sbjct: 82 LMENNIQMIQADTFRHLHHLEVL-QLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 348 PHAIGELRNLQ---LRGN-----VPSSLGNCQNLMLLSVSN-NKLTGALPPQILGILTLS 398
A L L+ LR N + +LM L + KL + L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNL 198
Query: 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG 458
L+L + +P + L L +L++S NHF P S ++L+ L++ + V+
Sbjct: 199 KYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 459 SIPLALNTLKSIKELDLSRNNLSGHIPE 486
A + L S+ EL+L+ NNLS +P
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPH 283
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 50/265 (18%), Positives = 91/265 (34%), Gaps = 33/265 (12%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
+P + SN + L+L N+ F L +L L G+N++ +G
Sbjct: 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG------AF 119
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFG 337
+ L L N + + LS L+ + N I +IP + +L
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW-LRNNPI-ESIPSYAFNRVPSLMRLD 177
Query: 338 L-EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILT 396
L E +L I + NL L++ + P + ++
Sbjct: 178 LGELKKLEY-IS---------------EGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVG 219
Query: 397 LSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNS 455
L L ++SGN I L +L +L + + S+ + +L L + N+
Sbjct: 220 LEEL-EMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277
Query: 456 VTGSIPLALNTLKSIKELDLSRNNL 480
++ L+ + EL L N
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 27/231 (11%)
Query: 64 CQWTG--VTCGHRH---------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNL 112
C V C R L L +I + +L L + L N++
Sbjct: 52 CSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 113 HGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171
Q+ L++L +++ N L + L L L + N +
Sbjct: 112 R--------QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
Query: 172 HSSIFNISSLELIYPLE-NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL 230
+ + SL + E +LE + L NL+ L++ N +P+ L+ L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGL 220
Query: 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT---GAIGDLDFIAHL 278
+ L++S NHF F+ L +L +L + + A L + L
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 379 SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438
+ L+ +P GI + + L+L N + +L +L L L N
Sbjct: 62 TRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117
Query: 439 SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP----EFLENL 491
+ + +L L + N +T A L ++EL L N + IP + +L
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSL 173
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
L L+++NL N+ P++ L L+ ++++GN P S L SL
Sbjct: 194 GLFNLKYLNLGMCNIKD---------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244
Query: 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQN 214
L + + S + ++ ++SL + N L SLP ++ L L +L + N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
+ + L+ +P + N L+L EN+ + + LE L + NS+
Sbjct: 59 VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115
Query: 461 PLALNTLKSIKELDLSRNNLS 481
A N L S+ L+L N L+
Sbjct: 116 VGAFNGLASLNTLELFDNWLT 136
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 5e-14
Identities = 46/308 (14%), Positives = 103/308 (33%), Gaps = 54/308 (17%)
Query: 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFG 260
+ ++++ + T ++ + +++ + + + + LPN+ +L
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 73
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY 320
N + D+ + +L N L L N+I
Sbjct: 74 GNK-----LTDIKPLTNLKNLGWL-------------------FLDE---------NKI- 99
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLT--GPIPHAIGELRNLQLRGN---VPSSLGNCQNLML 375
+ +K+L L LE+N ++ + H + +L +L L N + L L
Sbjct: 100 KDLSS-LKDLKKLKSLSLEHNGISDINGLVH-LPQLESLYLGNNKITDITVLSRLTKLDT 157
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435
LS+ +N+++ +P L L L LS N ++ + + LKNL L+L +
Sbjct: 158 LSLEDNQISDIVPLAGLTKLQN---LYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNK 212
Query: 436 IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNK 495
S + S+ P ++ ++ ++ +
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270
Query: 496 MNETINDF 503
+ + F
Sbjct: 271 IGKAKARF 278
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 7e-11
Identities = 52/369 (14%), Positives = 103/369 (27%), Gaps = 95/369 (25%)
Query: 129 NLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE 188
+ ++ + + +L S+ + + + +I S++ ++
Sbjct: 19 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS-----------DIKSVQ---GIQ 62
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID- 247
LPN+ L + N T P L+N NL L L N +
Sbjct: 63 Y-------------LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK---DLSS 104
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
L L L+ N I D++ + HL L L +
Sbjct: 105 LKDLKKLKSLSLEHNG-----ISDINGLVHLPQLESL-------------------YLGN 140
Query: 308 TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSL 367
N+I T + L L+ LE NQ++ ++ L
Sbjct: 141 ---------NKI--TDITVLSRLTKLDTLSLEDNQIS-----------DI-------VPL 171
Query: 368 GNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKNLVQL 425
L L +S N ++ + + L L L+L NL +
Sbjct: 172 AGLTKLQNLYLSKNHIS-----DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Query: 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485
++ +S + T + +I + +
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286
Query: 486 EFLENLSFN 494
+ + +S++
Sbjct: 287 KEVYTVSYD 295
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 40/239 (16%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
+L L + L +N + + L+ L + + N++ L L L
Sbjct: 129 HLPQLESLYLGNNKITD---------ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKL 177
Query: 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT 217
L +S+N +IS L L L NL+ L +
Sbjct: 178 QNLYLSKN-----------HISDLR---ALAG-------------LKNLDVLELFSQECL 210
Query: 218 GSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAH 277
+ SN + + I + + + N + F
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVTPEIISDD--GDYEKPNVKWHLPEFTNEVSFIFYQP 268
Query: 278 LTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336
+T F + ++ T+I + P K G+
Sbjct: 269 VTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGW 327
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 56/264 (21%), Positives = 96/264 (36%), Gaps = 53/264 (20%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
+P +S +N +LL+L N F L +L L +N++ T
Sbjct: 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------------ 102
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFG 337
++ F G+ L+ L N++ TIP L L
Sbjct: 103 ----------IEIGAFNGLANLNTLELFD---------NRL-TTIPNGAFVYLSKLKELW 142
Query: 338 LEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTL 397
L N + + + + + + L L +L+ + L+
Sbjct: 143 LRNNPIE-------------SIPSYAFNRIPSLRRLDLGE--LKRLS-YISEGAFEGLSN 186
Query: 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT 457
L+L+ L IP + L L +LDLS NH S P S L+ L+M + +
Sbjct: 187 LRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 458 GSIPLALNTLKSIKELDLSRNNLS 481
A + L+S+ E++L+ NNL+
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 49/251 (19%), Positives = 89/251 (35%), Gaps = 44/251 (17%)
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDF 248
N+++ + VN L +LE L + +N+ + + +NL L+L N + F
Sbjct: 74 NQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132
Query: 249 NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSST 308
L L L N + + + + F + L +L
Sbjct: 133 VYLSKLKELWLRNNPIES----------------------IPSYAFNRIPSLRRLDLGE- 169
Query: 309 IILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIG--ELRNLQLRGN--- 362
L ++ I + L NL L L IP+ +L L L GN
Sbjct: 170 -------LKRL-SYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLS 220
Query: 363 --VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNL 419
P S +L L + +++ + L + ++L+ N LT +P ++ L
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPL 278
Query: 420 KNLVQLDLSEN 430
+L ++ L N
Sbjct: 279 HHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 51/268 (19%), Positives = 101/268 (37%), Gaps = 51/268 (19%)
Query: 102 LRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLD 161
R +NL N + I S +L L+ + ++ N + + + L +L+ L+
Sbjct: 66 TRLLNLHENQIQ-IIK------VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118
Query: 162 ISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221
+ +N + + + + +S L+ ++ N +E S+P +P+L L + + +
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 222 -HSLSNASNLQLLDLSLNHFSGQVKI-DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLT 279
+ SNL+ L+L++ + +I + L L L+ N+L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSA------------- 221
Query: 280 NCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGL 338
+ F G++ L + +QI I NL +L L
Sbjct: 222 ---------IRPGSFQGLMHLQKLWMIQ---------SQI-QVIERNAFDNLQSLVEINL 262
Query: 339 EYNQLTGPIPHAI----GELRNLQLRGN 362
+N LT +PH + L + L N
Sbjct: 263 AHNNLTL-LPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 45/208 (21%), Positives = 72/208 (34%), Gaps = 24/208 (11%)
Query: 69 VTCGHRH---------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYE 119
V C ++ L L I +L L + L+ N++
Sbjct: 48 VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR------ 101
Query: 120 HGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF-N 177
+ L+ L +++ NRL + + L L L + N S F
Sbjct: 102 --TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158
Query: 178 ISSLELIYPLE-NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236
I SL + E RL + L NL L++ N +P+ L+ L LDLS
Sbjct: 159 IPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLS 215
Query: 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNL 264
NH S F L +L +L ++ +
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
LS LR++NLA NL P++ L L +D++GN L + P S L L
Sbjct: 183 GLSNLRYLNLAMCNLREI---------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQN 214
L + ++ + ++ N+ SL I N L LP ++ L +LE + + N
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
+ L +P + N L+L EN I S LE L + N +
Sbjct: 48 VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104
Query: 461 PLALNTLKSIKELDLSRNNLS 481
A N L ++ L+L N L+
Sbjct: 105 IGAFNGLANLNTLELFDNRLT 125
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 3e-13
Identities = 33/183 (18%), Positives = 73/183 (39%), Gaps = 10/183 (5%)
Query: 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN 362
+ + + +G + ++ +L + + LTG I +A +++L +
Sbjct: 20 STFKAYLNG-LLGQSSTANITEAQMNSLTYITLANINVTDLTG-IEYAH-NIKDLTINNI 76
Query: 363 ---VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419
+ + NL L + +T P + G+ +L++L D+S + SI T++ L
Sbjct: 77 HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL-DISHSAHDDSILTKINTL 135
Query: 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNN 479
+ +DLS N +I + L L+ L ++ + V + + +L
Sbjct: 136 PKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQT 192
Query: 480 LSG 482
+ G
Sbjct: 193 IGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 7e-10
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 12/144 (8%)
Query: 353 ELRNLQLRGNVPS--SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--LDLSGNLL 408
N L + + + +L ++++N +T + GI + L ++
Sbjct: 24 AYLNGLLGQSSTANITEAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHA 78
Query: 409 TGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468
T P + L NL +L + + + +LS T+L L + ++ SI +NTL
Sbjct: 79 TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 469 SIKELDLSRNNLSGHIPEFLENLS 492
+ +DLS N I L+ L
Sbjct: 137 KVNSIDLSYNGAITDI-MPLKTLP 159
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-09
Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 33/155 (21%)
Query: 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
+ +++L I +A + + ++ L I+ + ++
Sbjct: 39 TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-----------HATNYN--- 82
Query: 186 PLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK 245
P+ L NLE L + + T +LS ++L LLD+S + +
Sbjct: 83 PISG-------------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 246 IDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTN 280
N LP + ++ N I D+ + L
Sbjct: 130 TKINTLPKVNSIDLSYNGA----ITDIMPLKTLPE 160
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 27/254 (10%), Positives = 61/254 (24%), Gaps = 71/254 (27%)
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID 247
E + N+ + + + + + ++L + L+ + + +
Sbjct: 4 EQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLT 60
Query: 248 -FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
N+ L + + + I+ L+N +L G
Sbjct: 61 GIEYAHNIKDLTINNIH-----ATNYNPISGLSNLERLRIMG------------------ 97
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNV 363
+ P + L +L + ++ I I L + L N
Sbjct: 98 ----------KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Query: 364 ----PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419
L L L++ + + D G + +
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVH-----------------DYRG----------IEDF 180
Query: 420 KNLVQLDLSENHFS 433
L QL
Sbjct: 181 PKLNQLYAFSQTIG 194
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 35/147 (23%)
Query: 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155
+ LS L + + ++ + P++ L++L +DI+ + + + L
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKI-------PNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
++ +D+S N +I +I L+ +LP L+ L+++ +
Sbjct: 137 KVNSIDLSYN-------GAITDIMPLK-------------------TLPELKSLNIQFDG 170
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSG 242
+ + L L G
Sbjct: 171 VHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 64/333 (19%), Positives = 117/333 (35%), Gaps = 66/333 (19%)
Query: 174 SIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLL 233
SI +++ +I+P L N ++ ++N T ++ ++ + L
Sbjct: 2 SITQPTAINVIFPDPA-------------LANAIKIAAGKSNVTDTVT--QADLDGITTL 46
Query: 234 DLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292
+ I+ L NL L N I DL + +LT ++L
Sbjct: 47 SAFGTGVT---TIEGVQYLNNLIGLELKDNQ-----ITDLAPLKNLTKITEL-------- 90
Query: 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHA-I 351
LS N + + L ++ L Q+T P A +
Sbjct: 91 -----------ELSG---------NPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 352 GELRNLQLRGN---VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLL 408
L+ L L N S L NL LS+ N +++ L P L L+ L N +
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKI 185
Query: 409 TGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468
+ I + +L NL+++ L N S P L+ + L + + ++T + P+ N
Sbjct: 186 S-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT-NQPVFYNNNL 240
Query: 469 SIKELDLSRNNLSGHIPEFLENLSFNKMNETIN 501
+ + + +N ++ N T N
Sbjct: 241 VVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 52/299 (17%), Positives = 109/299 (36%), Gaps = 52/299 (17%)
Query: 129 NLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE 188
L+ I + + + L ++ L ++++E ++
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-----------GVTTIE---GVQ 60
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID- 247
L NL L ++ N T P L N + + L+LS N +
Sbjct: 61 Y-------------LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK---NVSA 102
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
L ++ L+ I D+ +A L+N L+ LD N + PL+ L++
Sbjct: 103 IAGLQSIKTLDLTSTQ-----ITDVTPLAGLSN---LQVLYLDLNQITNISPLA--GLTN 152
Query: 308 TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTG-PIPHAIGELRNLQLRGN---V 363
L +G Q+ + + NL L + N+++ ++ L + L+ N
Sbjct: 153 LQYLS-IGNAQV--SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD 209
Query: 364 PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNL 422
S L N NL +++++N +T ++ +++ SG + + ++ G +
Sbjct: 210 VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)
Query: 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155
V L+ L + L N + + NL+ + ++++GN L + ++ L+
Sbjct: 59 VQYLNNLIGLELKDNQITD---------LAPLKNLTKITELELSGNPLKN--VSAIAGLQ 107
Query: 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215
S+ LD++ + + + + +S+L+++Y N++ P+ L NL+ LS+
Sbjct: 108 SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLA---GLTNLQYLSIGNAQ 162
Query: 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLDF 274
+ P L+N S L L N S I LPNL ++ N I D+
Sbjct: 163 VSDLTP--LANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQ-----ISDVSP 212
Query: 275 IAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLN 334
+A+ +N L L +I N + N + G + +
Sbjct: 213 LANTSN---LFIVTLTNQ--------TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261
Query: 335 GFGLEYNQLTGPIPHAIGEL 354
LT + I +
Sbjct: 262 NGTYASPNLTWNLTSFINNV 281
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 53/309 (17%), Positives = 82/309 (26%), Gaps = 32/309 (10%)
Query: 201 FSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260
FS P + S + S LL D + +L RL
Sbjct: 17 FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY 320
+ + + + S L+ L+ G P + + + N +
Sbjct: 77 AARIPSRILFGA---LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSN 380
T + L GL+ + + L L +S+
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIA-----------QAHSLNFSCEQVRVFPALSTLDLSD 182
Query: 381 NKLTG------ALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFS- 433
N G AL P L + L + +G L LDLS N
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 434 IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLE---- 489
S + L L + + +P L + LDLS N L P E
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNPSPDELPQV 298
Query: 490 ---NLSFNK 495
+L N
Sbjct: 299 GNLSLKGNP 307
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 2e-09
Identities = 57/303 (18%), Positives = 84/303 (27%), Gaps = 52/303 (17%)
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLS---NASNLQLL 233
SLE + + +L+ L+VR + S LQ L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 234 DLSLNHFSG--QVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291
L +G + P+L LN + ++A L K
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSW----ATRDAWLAELQQWLKP------- 149
Query: 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPI---- 347
G+ LSIA +V+ L+ L N G
Sbjct: 150 ----GLKVLSIAQ------------AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193
Query: 348 ---PHAIGELRNLQLRGN--------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILT 396
P L+ L LR + L L +S+N L A +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
Query: 397 LSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSV 456
L+LS L +P + L LDLS N P + L ++GN
Sbjct: 254 QLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPF 308
Query: 457 TGS 459
S
Sbjct: 309 LDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 32/207 (15%), Positives = 51/207 (24%), Gaps = 29/207 (14%)
Query: 58 NNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIP 117
+ + W + L + F V L ++L+ N GE
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
Query: 118 YEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177
P L L + L LD+S N+ + +
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
Query: 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSL 237
L L++ +P L + L +LDLS
Sbjct: 251 W------------------------PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSY 283
Query: 238 NHFSGQVKIDFNRLPNLFRLNFGKNNL 264
N D LP + L+ N
Sbjct: 284 NRLDRNPSPDE--LPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 47/290 (16%), Positives = 83/290 (28%), Gaps = 38/290 (13%)
Query: 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLE 192
L+ +D + L+ L+ + + IS L+ + +
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 193 GSLPVNIG-FSLPNLEDLSVRQNNYTGSLPHSLS----NASNLQLLDLSLNHFSGQVKID 247
G+ P + + P+L L++R ++ L++L ++ H
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307
P L L+ N + + + PL L
Sbjct: 169 VRVFPALSTLDLSDNPELG-----------------------ERGLISALCPLKFPTL-Q 204
Query: 308 TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGE----LRNLQLRGNV 363
+ L G+ G V L G L +N L + L +L L
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264
Query: 364 PSSLGNC--QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGS 411
+ L +L +S N+L P L + L L GN S
Sbjct: 265 LKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVG---NLSLKGNPFLDS 311
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 14/173 (8%)
Query: 324 PPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--LRGNVPSSLGNCQNLMLLSVSNN 381
+ L+ ++ L P L +L+ ++ +L +++
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451
Query: 382 KLTGALPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVS 439
LT + + L ++ LDLS N L ++P + L+ L L S+N +E
Sbjct: 452 DLT-----VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA--LENVDG 503
Query: 440 LSACTTLEYLYMEGNSVTG-SIPLALNTLKSIKELDLSRNNLSGHIPEFLENL 491
++ L+ L + N + + L + + L+L N+L E L
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERL 555
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 45/184 (24%)
Query: 57 WNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEI 116
++ S + V L L ++ + ++ L + ++L+ N L
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR--- 476
Query: 117 PYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176
LPP++ L L+ + + N L + + + L L L + N
Sbjct: 477 -----ALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNN----------- 518
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQN------NYTGSLPHSLSNASNL 230
+ I PL + P L L+++ N L L ++
Sbjct: 519 RLQQSAAIQPLVS-------------CPRLVLLNLQGNSLCQEEGIQERLAEML---PSV 562
Query: 231 QLLD 234
+
Sbjct: 563 SSIL 566
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 5e-07
Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 29/237 (12%)
Query: 214 NNYTGSLPHSLSNASNLQLLDLSLN----------HFSGQVKIDFNRLPNLFRLNFGKNN 263
+ + L +LS+ +++ L +
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 394
Query: 264 LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL----NQI 319
L + + + + + + ++ L ++ L +
Sbjct: 395 LDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453
Query: 320 YGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNVPSSL---GNCQNL 373
T+ ++ L+ + L +N+L +P A+ LR L+ N ++ N L
Sbjct: 454 --TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVANLPRL 510
Query: 374 MLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK----NLVQLD 426
L + NN+L + Q L +LL+L GN L L ++ +
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSIL 566
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 19/177 (10%)
Query: 317 NQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAI----GELRNLQLRGNVPSSL---- 367
+I TI ++L +L+ L N + + L+ L +SL
Sbjct: 62 CEI-QTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 368 -GNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNL--- 422
G+ + L L+V++N + P+ LT LDLS N + SI L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178
Query: 423 -VQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478
+ LDLS N + I L+ L ++ N + + L S++++ L N
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 50/242 (20%), Positives = 84/242 (34%), Gaps = 33/242 (13%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID---FNR 250
+P N+ + ++L + N +S + LQ+LDLS I+ +
Sbjct: 21 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQS 74
Query: 251 LPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTII 310
L +L L N + + A+G S L+ + I +L +
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFS------GLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 311 LFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGN 369
L + N I PE NL NL L N++ + L + L
Sbjct: 129 LN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL--------- 178
Query: 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLS 428
+ L +S N + + P + L L L N L S+P + L +L ++ L
Sbjct: 179 ---NLSLDLSLNPMN-FIQPGAFKEIRLKE-LALDTNQLK-SVPDGIFDRLTSLQKIWLH 232
Query: 429 EN 430
N
Sbjct: 233 TN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 347 IPHAI-GELRNLQLRGN-----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL 400
IP + +NL L N S + L +L +S ++ + L+
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLST 80
Query: 401 LDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS 459
L L+GN + S+ L +L +L E + + + TL+ L + N + S
Sbjct: 81 LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-S 138
Query: 460 IPL--ALNTLKSIKELDLSRNNLS 481
L + L +++ LDLS N +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ 162
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 46/200 (23%), Positives = 69/200 (34%), Gaps = 53/200 (26%)
Query: 323 IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN--------VPSSLGNCQ 371
+P KNL L +N L ++ LQ L SL +
Sbjct: 26 LPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSEN 430
L+L + N + +L L+ L L S+ G+LK L +L+++ N
Sbjct: 80 TLIL---TGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134
Query: 431 HF-SIEIPVSLSACTTLEYLYMEGNSVTGSIP------------------LALNTLKSI- 470
S ++P S T LE+L + N + SI L+LN + I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 471 ---------KELDLSRNNLS 481
KEL L N L
Sbjct: 194 PGAFKEIRLKELALDTNQLK 213
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-08
Identities = 53/240 (22%), Positives = 89/240 (37%), Gaps = 45/240 (18%)
Query: 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFS----GMFHSSIFNISSLELIYPLE 188
+N+D++ N L S L LD+S G + S ++S+L L
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTG--- 85
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSL-SNASNLQLLDLSLNHF-SGQVKI 246
N ++ SL + L +L+ L + N SL + + L+ L+++ N S ++
Sbjct: 86 NPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 247 DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS 306
F+ L NL L+ N + + DL L +PL +L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLR---VLHQ-----------------MPLLNLSLD 183
Query: 307 STIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAI----GELRNLQLRGN 362
+ LN + I P + L L+ NQL +P I L+ + L N
Sbjct: 184 -------LSLNPM-NFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 18/190 (9%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRS 156
+ L+ ++L+ + + +LS L + + GN + S + L S
Sbjct: 50 SFPELQVLDLSRCEIQ--------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFS-LPNLEDLSVRQNN 215
L L E + + + I ++ +L+ + N ++ S + FS L NLE L + N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNK 160
Query: 216 YTGSLPH-SLSNASNLQL----LDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIG 270
S+ L + L LDLSLN + F + L L N L + G
Sbjct: 161 IQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 218
Query: 271 DLDFIAHLTN 280
D + L
Sbjct: 219 IFDRLTSLQK 228
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 14/170 (8%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRS 156
+LS L + L N + L LS+LQ + L S +G L++
Sbjct: 74 SLSHLSTLILTGNPIQ--------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 157 LSFLDISENAFSGMFHSSIF-NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVR--- 212
L L+++ N F N+++LE + N+++ S+ L + L++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184
Query: 213 QNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262
N + L+ L L N F+RL +L ++ N
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 323 IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGNVPSSL---GNCQNLMLL 376
+P + L L N L + L L + L G L L
Sbjct: 29 LPKDTTILH------LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82
Query: 377 SVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIE 435
+S+N+L +LP + L++L D+S N LT S+P L L +L L N
Sbjct: 83 DLSHNQLQ-SLPLLGQTLPALTVL-DVSFNRLT-SLPLGALRGLGELQELYLKGNELK-T 138
Query: 436 IPVSLSACTT-LEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRNNLS 481
+P L T LE L + N++T +P LN L+++ L L N+L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 48/204 (23%), Positives = 67/204 (32%), Gaps = 30/204 (14%)
Query: 228 SNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAF 287
+ +L LS N L +LN + L L L L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-----LQVDGTLPV---LGTL 82
Query: 288 GLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGP 346
L N LPL L + +L + N++ ++P + L L L+ N+L
Sbjct: 83 DLSHNQL-QSLPLLGQTLPALTVL-DVSFNRL-TSLPLGALRGLGELQELYLKGNELKT- 138
Query: 347 IPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGN 406
+P G L L LS++NN LT LP +L L L L N
Sbjct: 139 LPP--GLLTPT-------------PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182
Query: 407 LLTGSIPTEVGNLKNLVQLDLSEN 430
L +IP L L N
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 379 SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438
LT ALPP + + +L LS NLL + L QL+L + ++ V
Sbjct: 18 DKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV 72
Query: 439 SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
L L + N + S+PL TL ++ LD+S N L+
Sbjct: 73 D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 20/170 (11%)
Query: 73 HRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSA 132
+ R+T+L L + G L L ++L+ N L LP L A
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ--------SLPLLGQTLPA 101
Query: 133 LQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFS----GMFHSSIFNISSLELIYPLE 188
L +D++ NRL S +L L L L + N G+ LE +
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP----TPKLEKLSLAN 157
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLN 238
N L LP + L NL+ L +++N+ ++P + L L N
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 54/284 (19%), Positives = 102/284 (35%), Gaps = 50/284 (17%)
Query: 224 LSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK 283
+ +L + V N L ++ ++ ++ I + I +L N
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSD-----IKSVQGIQYLPN--- 69
Query: 284 LEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQL 343
+ L+ N + PL+ NL + LF + N++ + +K+L L LE+N +
Sbjct: 70 VTKLFLNGNKLTDIKPLA--NLKNLGWLF-LDENKV-KDLSS-LKDLKKLKSLSLEHNGI 124
Query: 344 TGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--L 401
+ + L + L L + NNK+T I + L+ L L
Sbjct: 125 S------------------DINGLVHLPQLESLYLGNNKIT-----DITVLSRLTKLDTL 161
Query: 402 DLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP 461
L N ++ I + L L L LS+NH I +L+ L+ L +
Sbjct: 162 SLEDNQIS-DIV-PLAGLTKLQNLYLSKNH--ISDLRALAGLKNLDVLELFSQECLNKPI 217
Query: 462 ------LALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNET 499
+ NT+K+ ++ +S N+ ++ T
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 23/226 (10%)
Query: 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKI-DFNRLPNLFRLNFG 260
L +++ + ++ S+ + N+ L L+ N + I L NL L
Sbjct: 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLD 98
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY 320
+N + DL + L L++ L+ N + L +L L+ +G N+I
Sbjct: 99 ENK-----VKDLSSLKDLKK---LKSLSLEHNGISDINGLV--HLPQLESLY-LGNNKI- 146
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNLQLRGN---VPSSLGNCQNLMLL 376
T + L L+ LE NQ++ +P + +L+NL L N +L +NL +L
Sbjct: 147 -TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 205
Query: 377 SVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNL 422
+ + + ++ + + + G+L+T I ++ G+ +
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 251
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 58/297 (19%), Positives = 93/297 (31%), Gaps = 45/297 (15%)
Query: 228 SNLQLLDLSLNHFSGQ-VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286
++Q LD+ S L + L D+ L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAE 60
Query: 287 FGLDTNIFG--GVLPLSIANLSSTIILFTMGL--NQI----YGTIPPEVKNLVNLNGFGL 338
L +N G GV + + + + + L + G + ++ L L L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 339 EYNQLTGPIPHAIGE--------LRNLQLRGNVPSS---------LGNCQNLMLLSVSNN 381
N L + E L LQL S+ L + L+VSNN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180
Query: 382 KLTGA---LPPQILGILTLSIL-LDLSGNLLT----GSIPTEVGNLKNLVQLDLSENHFS 433
+ A + Q L + L L +T + V + +L +L L N
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 434 IE-----IPVSLSACTTLEYLYMEGNSVT----GSIPLALNTLKSIKELDLSRNNLS 481
P L + L L++ +T G + L +S+KEL L+ N L
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 72/415 (17%), Positives = 123/415 (29%), Gaps = 93/415 (22%)
Query: 130 LSALQNIDIAGNRLHSR----VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIY 185
L Q + + L + +L +L+ L++ N
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---------------- 70
Query: 186 PLENRLEGSLPVNIGFSLPN--LEDLSVRQNNYT----GSLPHSLSNASNLQLLDLSLNH 239
G V G P+ ++ LS++ T G L +L LQ L LS N
Sbjct: 71 ------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 240 FSGQ-VKIDFNRL----PNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIF 294
+++ L L +L +L A + L + + N
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 295 G--GVLPLSIANLSSTIILFTMGL--NQI----YGTIPPEVKNLVNLNGFGLEYNQLTGP 346
GV L S L + L + + V + +L L N+L
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 347 IPHAIGE--------LRNLQLRGNVPSS---------LGNCQNLMLLSVSNNKLTGALPP 389
+ LR L + ++ L ++L LS++ N+L
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE--- 299
Query: 390 QILGILTLSIL----------LDLSGNLLTG----SIPTEVGNLKNLVQLDLSENHFSIE 435
G L L + T + + + L++L +S N
Sbjct: 300 ---GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356
Query: 436 IPVSLSA-----CTTLEYLYMEGNSVT----GSIPLALNTLKSIKELDLSRNNLS 481
L + L L++ V+ S+ L S++ELDLS N L
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 29/183 (15%)
Query: 315 GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLM 374
L + ++P L L +N L+ LR P+ L N +L+
Sbjct: 29 QLPNVPQSLPSYTALLD------LSHNNLS--------RLR----AEWTPTRLTNLHSLL 70
Query: 375 LLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFS 433
L S+N L + + + LDLS N L ++ + +L+ L L L NH
Sbjct: 71 L---SHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV 125
Query: 434 IEIPVSLSACTTLEYLYMEGNSVTGSIP----LALNTLKSIKELDLSRNNLSGHIPEFLE 489
+ + L+ LY+ N ++ P N L + LDLS N L L+
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 490 NLS 492
L
Sbjct: 185 KLP 187
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 8e-07
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
Query: 129 NLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF-NISSLELIYPL 187
L+ L ++ ++ N L+ E+ + +L +LD+S N +F ++ +LE++
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP----HSLSNASNLQLLDLSLNHFSGQ 243
N + + N + L+ L + QN + P + L LLDLS N
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 244 VKIDFNRLPNLFRLN 258
D +LP +
Sbjct: 179 PLTDLQKLPAWVKNG 193
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 30/145 (20%), Positives = 44/145 (30%), Gaps = 26/145 (17%)
Query: 317 NQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLML 375
N + I E + NL L N L + + Q L +
Sbjct: 74 NHL-NFISSEAFVPVPNLRYLDLSSNHLHT-LD---------------EFLFSDLQALEV 116
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV----GNLKNLVQLDLSENH 431
L + NN + + + L LS N ++ P E+ L L+ LDLS N
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174
Query: 432 FSIEIPVSLSACTTL--EYLYMEGN 454
L LY+ N
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 33/194 (17%), Positives = 68/194 (35%), Gaps = 31/194 (15%)
Query: 64 CQWTGVTCGHRH---------RRVTKLVLRNQSIGGFLSPYV-GNLSFLRFVNLASNNLH 113
C ++C + L L + ++ + + L+ L + L+ N+L+
Sbjct: 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 114 GEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFS---- 168
+ + L+ +D++ N LH+ L++L L + N
Sbjct: 78 --------FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129
Query: 169 GMFHSSIFNISSLELIYPLENRLEGSLPVNI---GFSLPNLEDLSVRQNNYTGSLPHSLS 225
F +++ L+ +Y +N++ PV + G LP L L + N L
Sbjct: 130 NAFE----DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 226 NASNLQLLDLSLNH 239
L L++
Sbjct: 185 KLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 7/153 (4%)
Query: 133 LQNIDIAGNRLHSRVPE-SLGQLRSLSFLDISENAFSGMFHSSIF-NISSLELIYPLENR 190
+D++ N L E + +L +L L +S N + + S F + +L + N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNH 99
Query: 191 LEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH---FSGQVKID 247
L +L + L LE L + N+ ++ + + LQ L LS N F ++ D
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTN 280
N+LP L L+ N L + DL +
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 16/174 (9%)
Query: 327 VKNLVNLNGFGLEYNQLTGPIP-HAIGELRNLQLRGN---VPSSLGNCQNLMLLSVSNNK 382
K L + F + + + L+ L L N S L + L LSV+ N+
Sbjct: 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR 96
Query: 383 LTGALPPQILGILTLSIL-LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441
L + GI + + L L N L + +LKNL L + N ++ V L
Sbjct: 97 LK-----NLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNN--KLKSIVMLG 147
Query: 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNK 495
+ LE L + GN +T + L LK + +DL+ ++ L
Sbjct: 148 FLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYITN 199
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFG 260
L N ++ + + T + S +Q + ++ + NL L+
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLS 71
Query: 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY 320
N I DL + LT +L ++ N + + A LS + N++
Sbjct: 72 HNQ-----ISDLSPLKDLTKLEELS---VNRNRLKNLNGIPSACLSR----LFLDNNEL- 118
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNLQLRGN---VPSSLGNCQNLMLL 376
+ +L NL + N+L + + +L L L GN L + + +
Sbjct: 119 -RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177
Query: 377 SVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSEN 430
++ K + + + D G ++ P + N + V +
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS---PYYISNGGSYVDGCVLWE 228
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 12/128 (9%)
Query: 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQ 424
N + ++ +T + L+ + + + S+ + NL +
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKE 67
Query: 425 LDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
L LS N I L T LE L + N + + L L L N L
Sbjct: 68 LHLSHNQ--ISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNNELRD-- 120
Query: 485 PEFLENLS 492
+ L +L
Sbjct: 121 TDSLIHLK 128
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 21/176 (11%)
Query: 317 NQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAI----GELRNLQLRGN--------V 363
N++ ++P + L L L N+L +P I L L + N V
Sbjct: 47 NKL-SSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGV 104
Query: 364 PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNL 422
L N L L N+L +LPP++ LT L L N L S+P V L +L
Sbjct: 105 FDQLVNLAELRL---DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159
Query: 423 VQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478
+L L N + T L+ L ++ N + A ++L+ +K L L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 122 QLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAF----SGMFHSSIF 176
LP L+ L+ + + N+L + +L++L L +++N G+F
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD---- 106
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSL-SNASNLQLLDL 235
+ +L + N+L+ SLP + SL L LS+ N SLP + ++L+ L L
Sbjct: 107 QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164
Query: 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTN 280
N + F++L L L N L G D + L
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 54/239 (22%), Positives = 82/239 (34%), Gaps = 55/239 (23%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
++P NI + + L ++ N + + + L+LL L+ N F L N
Sbjct: 30 AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L L N L L +F ++ L+ L
Sbjct: 87 LETLWVTDNKLQA----------------------LPIGVFDQLVNLAELRLDR------ 118
Query: 314 MGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN 372
NQ+ ++PP V +L L L YN+L +P V L + +
Sbjct: 119 ---NQL-KSLPPRVFDSLTKLTYLSLGYNELQS-LPK------------GVFDKLTSLKE 161
Query: 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSEN 430
L L NN+L +P LT L L N L +P +L+ L L L EN
Sbjct: 162 LRL---YNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 28/151 (18%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHS---RVPESLGQ 153
L L + + N L LP + L L + + N+L S RV +SL +
Sbjct: 83 ELKNLETLWVTDNKLQ--------ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 154 LRSLS-----FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLED 208
L LS + + F + +SL+ + N+L+ +P L L+
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKL--------TSLKELRLYNNQLK-RVPEGAFDKLTELKT 185
Query: 209 LSVRQNNYTGSLPH-SLSNASNLQLLDLSLN 238
L + N +P + + L++L L N
Sbjct: 186 LKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 14/184 (7%)
Query: 322 TIPPEV-KNLVNLNGFGLEYNQLTGPIP-HAIGELRNLQ----LRGN-----VPSSLGNC 370
I +L + N + I L L + N P + N
Sbjct: 44 VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103
Query: 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV--GNLKNLVQLDLS 428
NL L +SN + LP +LLD+ N+ +I G V L L+
Sbjct: 104 PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
Query: 429 ENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFL 488
+N + + E + N++ + LD+SR + L
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222
Query: 489 ENLS 492
ENL
Sbjct: 223 ENLK 226
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 37/257 (14%), Positives = 78/257 (30%), Gaps = 25/257 (9%)
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
+++ +P L R+ L + + LE I +N + +
Sbjct: 14 FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHS-LSNASNLQLLDLSLNHFSGQVKIDFNRLPNL 254
++ +LP L ++ + + N + N NLQ L +S +
Sbjct: 71 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130
Query: 255 FRLNFGKNN----LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTII 310
L+ N + + L + L+ N + S N +
Sbjct: 131 VLLDIQDNINIHTIERNSFVGL--------SFESVILWLNKNGI-QEIHNSAFNGTQLDE 181
Query: 311 LFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN-----VP 364
L N + +P +V + ++ + + L+ L+ R +P
Sbjct: 182 LNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP 240
Query: 365 SSLGNCQNLMLLSVSNN 381
+L LM S++
Sbjct: 241 -TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 12/187 (6%)
Query: 76 RRVTKLVLRNQSIGGFLSPYV-GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQ 134
+ K+ + + + V NL L + + N I P + NL LQ
Sbjct: 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN------PEAFQNLPNLQ 107
Query: 135 NIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN--ISSLELIYPLENRLE 192
+ I+ + LDI +N + F +++ +N ++
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 193 GSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRL 251
+ + F+ L++L++ NN LP AS +LD+S L
Sbjct: 168 -EIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225
Query: 252 PNLFRLN 258
L +
Sbjct: 226 KKLRARS 232
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 56/329 (17%), Positives = 100/329 (30%), Gaps = 67/329 (20%)
Query: 1 MLNFISITYLATSVWCFVLFLLDSHSCFGLHSNET-DRLAYLAIKSQLQDPL----GVTK 55
ML + Y W D S L + L L ++ L V
Sbjct: 201 MLQ--KLLYQIDPNWTS---RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-- 253
Query: 56 SWNNSI----SL-CQWTGVTCGHRHRRVT--------KLVLRNQSIGGFLSPYVGNLSFL 102
N +L C+ +T R ++VT + + V +L L
Sbjct: 254 -QNAKAWNAFNLSCK-ILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LL 308
Query: 103 RFVNLASNNLHGEIPYE-HGQLPPSIGNLSAL--QNIDIAGNRLHSRVPESLGQLRSLSF 159
++++ +L P E P + ++ + N H + L + S
Sbjct: 309 KYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSL 363
Query: 160 LDISENAFSGMFHS-SIF----NISS--LELIYPLENRLEGSLPVNIGFSLPNLEDLSVR 212
+ + MF S+F +I + L LI+ + S + + L + +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 213 QNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN-FGKNNLGTGAIGD 271
T S+ S+ ++L + H + +D +P F + L
Sbjct: 421 PKESTISI-PSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYL------- 469
Query: 272 LD-----FIA-HLTNCSKLEAFGLDTNIF 294
D I HL N E L +F
Sbjct: 470 -DQYFYSHIGHHLKNIEHPERMTLFRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 72/503 (14%), Positives = 138/503 (27%), Gaps = 167/503 (33%)
Query: 113 HGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFH 172
H + +E G+ Q DI L + D+ ++ S
Sbjct: 4 HHHMDFETGEH--------QYQYKDI----LSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 173 SSIFNISSLE-----LIYPLENR--------LEGSLPVNIGF------------SLPNLE 207
I L + L ++ +E L +N F S+
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 208 DLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN-LFRLNFGKNNLGT 266
+ R Y + + N S LQ + +L L L KN L
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQP---------------YLKLRQALLELRPAKNVLID 156
Query: 267 GAIGDLDFIAHLTNCSK-------LEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQI 319
G +G K ++ + + + L++ N +S + M L ++
Sbjct: 157 GVLG----------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKL 205
Query: 320 YGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSL------------ 367
I P + + + ++ I ELR L + L
Sbjct: 206 LYQIDPNWTSRSD-HSSNIKLR-----IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 368 ----GNCQNLML---------LSVSNNK----------LT----------------GALP 388
+C+ L+ LS + LT LP
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 389 PQILGI--LTLSILLDLSGNLLTGSIPT-------EVGNLKNLVQ-----LDLSE--NHF 432
++L LSI+ + + T L +++ L+ +E F
Sbjct: 320 REVLTTNPRRLSII----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 433 --------SIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
S IP L ++ + + + + +N L L + + I
Sbjct: 376 DRLSVFPPSAHIPTI-----LLSLIW--FDVIKSDVMVVVNKLHK-YSL-VEKQPKESTI 426
Query: 485 PEFLENLSFNKMNETINDFCHHK 507
+ ++ + N++ H+
Sbjct: 427 --SIPSIYLELKVKLENEYALHR 447
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Query: 323 IPPEVKNLVNLNGFGLEYNQLTGPIP----HAIGELRNLQLRGNVPSSL-----GNCQNL 373
+P + + LE N + IP +LR + L N S L ++L
Sbjct: 30 LPETITEIR------LEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 374 MLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHF 432
L + NK+T LP + L LL L+ N + + + +L NL L L +N
Sbjct: 83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140
Query: 433 SIEIPVSLSACTTLEYLYMEGN 454
+ S ++ +++ N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 8e-07
Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 20/140 (14%)
Query: 369 NCQNLMLLSV-------------SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
+C+ L + N + +PP +DLS N ++ + +
Sbjct: 17 DCRGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPD 74
Query: 416 V-GNLKNLVQLDLSENHFSIEIPVSL-SACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKE 472
L++L L L N + E+P SL +L+ L + N + + + A L ++
Sbjct: 75 AFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNL 132
Query: 473 LDLSRNNLSGHIPEFLENLS 492
L L N L L
Sbjct: 133 LSLYDNKLQTIAKGTFSPLR 152
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 106 NLASNNLHGEIPYEHGQLPPSI-GNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISE 164
L N + +PP L+ ID++ N++ P++ LRSL+ L +
Sbjct: 38 RLEQNTIK--------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 165 NAF----SGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSL 220
N +F + SL+L+ N++ L V+ L NL LS+ N ++
Sbjct: 90 NKITELPKSLFEG----LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TI 143
Query: 221 PH-SLSNASNLQLLDLSLNHF 240
+ S +Q + L+ N F
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 11/134 (8%)
Query: 134 QNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFS----GMFHSSIFNISSLELIYPLEN 189
I + N + P + + L +D+S N S F + SL + N
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGN 90
Query: 190 RLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH-SLSNASNLQLLDLSLNHFSGQVKIDF 248
++ LP ++ L +L+ L + N L + + NL LL L N K F
Sbjct: 91 KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 249 NRLPNLFRLNFGKN 262
+ L + ++ +N
Sbjct: 149 SPLRAIQTMHLAQN 162
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 32/138 (23%), Positives = 44/138 (31%), Gaps = 17/138 (12%)
Query: 353 ELRNLQLRGN------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--LDLS 404
+R L L + NL LS+ N L + + L L L+LS
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLELS 79
Query: 405 GNLLTGSIPTEVGNLKNLVQLDLSENHF-SIEIPVSLSACTTLEYLYMEGNSVTGSI--- 460
N + G + L NL L+LS N I L L+ L + VT
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139
Query: 461 PLALNTLKSIKELDLSRN 478
L + LD
Sbjct: 140 ESVFKLLPQLTYLDGYDR 157
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 198 NIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257
+ NLE LS+ N S+ +L L+ L+LS N G + + +LPNL L
Sbjct: 43 GLTAEFVNLEFLSL-INVGLISVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100
Query: 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292
N N + D+ + L L++ L
Sbjct: 101 NLSGNK-----LKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
LD + G I NL L L + +L L+ L + N + G +
Sbjct: 31 LDNCKSND-GKIEGLTAEFVNLEFLSLINV--GLISVSNLPKLPKLKKLELSENRIFGGL 87
Query: 461 PLALNTLKSIKELDLSRNNLS 481
+ L ++ L+LS N L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLK 108
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 17/134 (12%)
Query: 353 ELRNLQLRGN------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL--LDLS 404
+++ L L + + + L LS N LT I + L+ L L+LS
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELS 72
Query: 405 GNLLTGSIPTEVGNLKNLVQLDLSENHF-SIEIPVSLSACTTLEYLYMEGNSVTGSI--- 460
N ++G + NL L+LS N + L L+ L + VT
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132
Query: 461 PLALNTLKSIKELD 474
L + LD
Sbjct: 133 ENVFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236
S ++ + +R + LE LS N S+ + L + L+ L+LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST-INVGLTSIAN-LPKLNKLKKLELS 72
Query: 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292
N SG +++ + PNL LN N I DL I L L++ L
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNK-----IKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 401 LDLSGNLLT-GSIPTEVGNLKNLVQLDLSENHF-SIEIPVSLSACTTLEYLYMEGNSVTG 458
L L + G + + L L SI L L+ L + N V+G
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSG 78
Query: 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNK 495
+ + ++ L+LS N + +E L +
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLE 113
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Query: 353 ELRNLQLRGNVPSSLGN----CQNLMLLSVSNNKLTGALPPQILGILTLSIL--LDLSGN 406
R L LRG + N + S+N++ ++ G L L L ++ N
Sbjct: 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKTLLVNNN 74
Query: 407 LLTGSIPTEVGNLKNLVQLDLSENHFS-IEIPVSLSACTTLEYLYMEGNSVTGSI---PL 462
+ L +L +L L+ N + L++ +L YL + N VT
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 134
Query: 463 ALNTLKSIKELDLSR 477
+ + ++ LD +
Sbjct: 135 VIYKVPQVRVLDFQK 149
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 5/102 (4%)
Query: 382 KLTGALPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVS 439
KLT L Q LDL G + I L +D S+N I
Sbjct: 3 KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE--IRKLDG 59
Query: 440 LSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481
L+ L + N + L + EL L+ N+L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 9e-07
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 26/165 (15%)
Query: 315 GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLM 374
+ IP + L L NQ+T P L NL+
Sbjct: 30 RHASVPAGIPTNAQILY------LHDNQITKLEPGVFDSLINLKE--------------- 68
Query: 375 LLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFS 433
L + +N+L ALP + LT +LDL N LT +P+ V L +L +L + N +
Sbjct: 69 -LYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT 125
Query: 434 IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478
E+P + T L +L ++ N + A + L S+ L N
Sbjct: 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 23/129 (17%)
Query: 369 NCQNLMLLSV-------------SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
+C++ SV +N++T L P + L L L N L ++P
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLG-ALPVG 82
Query: 416 V-GNLKNLVQLDLSENHF-SIEIPV--SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIK 471
V +L L LDL N + V L L+ L+M N +T +P + L +
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRL---VHLKELFMCCNKLT-ELPRGIERLTHLT 138
Query: 472 ELDLSRNNL 480
L L +N L
Sbjct: 139 HLALDQNQL 147
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 63/289 (21%)
Query: 224 LSNASNLQLLDLSLNHFSGQ----VKIDFNRLPNLFRLNFGKNNLGTGAIGDL-DFIAHL 278
++ S ++ L L+ + + V ++ + N +GT A L + IA
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
+ E + T +P ++ L ++ + L + L
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALL---------------KCPKLHTVR---L 101
Query: 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT-------------G 385
N + + L L L + NN L
Sbjct: 102 SDNAFGPTAQEPLIDF------------LSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149
Query: 386 ALPPQILGILTLSILLDLSGNLLTG----SIPTEVGNLKNLVQLDLSENHFSIE-----I 436
A+ + L + N L + + L + + +N E +
Sbjct: 150 AVNKKAKNAPPLRSI-ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 437 PVSLSACTTLEYLYMEGNSVT--GSIPLA--LNTLKSIKELDLSRNNLS 481
L+ C L+ L ++ N+ T GS LA L + +++EL L+ LS
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 54/335 (16%), Positives = 108/335 (32%), Gaps = 64/335 (19%)
Query: 204 PNLEDLSVRQNNYTG----SLPHSLSNASNLQLLDLSLNHFSGQVKIDF----------- 248
+++++ + N L ++++ +L++ + S F+G+VK +
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQAL 90
Query: 249 NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSST 308
+ P L + N G I L+ + LE L N G P + A ++
Sbjct: 91 LKCPKLHTVRLSDNAFG--PTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARA 145
Query: 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG 368
+ + KN L N+L + +
Sbjct: 146 LQELAVNKKA---------KNAPPLRSIICGRNRLENGSMKEWAK------------TFQ 184
Query: 369 NCQNLMLLSVSNNKLT--GALPPQILGILTLSIL--LDLSGNLLTG----SIPTEVGNLK 420
+ + L + + N + G + G+ L LDL N T ++ + +
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244
Query: 421 NLVQLDLSENHFS----IEIPVSLSAC--TTLEYLYMEGNSVTGSIPLAL-----NTLKS 469
NL +L L++ S + + S L+ L ++ N + L +
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304
Query: 470 IKELDLSRNNLS---GHIPEFLENLSFNKMNETIN 501
+ L+L+ N S + E E S E
Sbjct: 305 LLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 11/138 (7%)
Query: 354 LRNLQLRGNV------PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNL 407
+ ++++R P +L L L + N L + + +L+++ N
Sbjct: 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141
Query: 408 LTGSIPTEV--GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP-LAL 464
SIP G + L L N F+ + T L+ +Y+ N I A
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200
Query: 465 NTLKS-IKELDLSRNNLS 481
+ S LD+S+ +++
Sbjct: 201 GGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLSEN 430
+ L + L +P L + +S ++ + + NL + +++
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 431 HFSIEIPVS-LSACTTLEYLYMEGNSVTGSIP--LALNTLKSIKELDLSRNNLSGHIPE 486
I L L++L + + P + + L+++ N IP
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLKNLVQLDLS 428
C V+ + +P + + L L L +IP+ NL N+ ++ +S
Sbjct: 10 CHQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63
Query: 429 ENHFSIEIPV-SLSACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRNNLSGHIPE 486
+ ++ S + + ++ + I AL L +K L + L P+
Sbjct: 64 IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122
Query: 487 F 487
Sbjct: 123 L 123
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 20/134 (14%)
Query: 369 NCQNLMLLSV-------------SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
+C N L + +NN+ T I L ++ S N +T I
Sbjct: 17 DCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEG 75
Query: 416 V-GNLKNLVQLDLSENHFSIEIPVSL-SACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKE 472
+ ++ L+ N + + +L+ L + N +T + + L S++
Sbjct: 76 AFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRL 133
Query: 473 LDLSRNNLSGHIPE 486
L L N ++ +
Sbjct: 134 LSLYDNQIT-TVAP 146
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 129 NLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF-NISSLELIYPL 187
L L+ I+ + N++ + ++ + ++ N +F + SL+ +
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLR 113
Query: 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH-SLSNASNLQLLDLSLNHF 240
NR+ + + L ++ LS+ N T ++ + +L L+L N F
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 12/135 (8%)
Query: 134 QNIDIAGNRLHSRVPESL-GQLRSLSFLDISENAFS----GMFHSSIFNISSLELIYPLE 188
+ + N + +L L ++ S N + G F S + I
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----ASGVNEILLTS 90
Query: 189 NRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH-SLSNASNLQLLDLSLNHFSGQVKID 247
NRLE ++ + L +L+ L +R N T + + S S+++LL L N +
Sbjct: 91 NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148
Query: 248 FNRLPNLFRLNFGKN 262
F+ L +L LN N
Sbjct: 149 FDTLHSLSTLNLLAN 163
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 24/138 (17%)
Query: 354 LRNLQLRGNVPSS---LGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL---LDLSGNL 407
++L L N L +NL +LS+ N + +I + ++ L +S N
Sbjct: 50 CKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQ 104
Query: 408 LTGSIPTEVGNLKNLVQLDLSENHFS-IEIPVSLSACTTLEYLYMEGNSVTGSIPLA--- 463
+ S+ + + L NL L +S N + L+A LE L + GN +
Sbjct: 105 IA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162
Query: 464 -------LNTLKSIKELD 474
+ L ++K+LD
Sbjct: 163 SEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460
L LS N + I + + ++NL L L N +I + TLE L++ N + S+
Sbjct: 53 LALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL 108
Query: 461 PLALNTLKSIKELDLSRNNLS 481
+ L +++ L +S N ++
Sbjct: 109 S-GIEKLVNLRVLYMSNNKIT 128
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 362 NVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV-GNLK 420
+ L +NL L + N + L + L L L + + L + +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNS 455
L +L+LS N + +L+ L + GN
Sbjct: 81 RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNP 114
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-05
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 411 SIPTEVGNLKNLVQLDLSENHFSIEIP-VSLSACTTLEYLYMEGNSVTGSIPLALNTLKS 469
+ +NL +L + + L L L + + + P A +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 470 IKELDLSRNNLSGHIPEFLENLS 492
+ L+LS N L + ++ LS
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLS 104
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157
L + + + + + L L+N+ I + L P++ L
Sbjct: 29 GAENLTELYIENQQHLQHLELR------DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRL 191
S L++S NA SL+ + N L
Sbjct: 83 SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 379 SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438
SN L LP GI L L GN T +P E+ N K+L +DLS N S
Sbjct: 18 SNKGLK-VLPK---GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQ 72
Query: 439 SLSACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRNNLSGHIPE 486
S S T L L + N + IP + LKS++ L L N++S +PE
Sbjct: 73 SFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPE 119
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 43/333 (12%), Positives = 89/333 (26%), Gaps = 34/333 (10%)
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT-GSLPH-SLSNASNLQLLD 234
+ LI I +L L+ + R+ + L + + A +L+ L
Sbjct: 85 RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144
Query: 235 LSL-NHFSGQVKIDF-NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292
L + F+ + + L +++ + + LE
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE--KDGKWLHELAQHNTSLEVLNFYMT 202
Query: 293 IFGGVLPLSIANLSST-IILFTMGLNQIYGT----IPPEVKNLVNLNGFGLEYNQLTGPI 347
F + P + ++ L ++ + NL G L +
Sbjct: 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262
Query: 348 PHAIGELRNLQLRG-------NVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL 400
+ R L G +P + L + L ++ +
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSA------------CTTLEY 448
L+ + + K L +L + + C LEY
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382
Query: 449 LYMEGNSVT----GSIPLALNTLKSIKELDLSR 477
+ + + +T SI L L + + L R
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 50/347 (14%), Positives = 103/347 (29%), Gaps = 51/347 (14%)
Query: 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT---GSLPHSLSNASNLQLL 233
N+ L+L + + G + + +L L++ +L ++ NL+ L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216
Query: 234 DLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNI 293
L+ ++ R P L L G L+ C +L +
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276
Query: 294 FGGVLP--------LSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTG 345
LP L+ NLS + + L ++ + L + + +
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQ-SYDLVKL-------LCQCPKLQRLWV-LDYIED 327
Query: 346 PIPHAIGE----LRNLQLRGNVPSSLG---------------NCQNLMLLSVSNNKLTGA 386
+ LR L++ + P + C L + ++T A
Sbjct: 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387
Query: 387 -----------LPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435
+ L I+ L+ L V + K+L +L LS
Sbjct: 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKV 447
Query: 436 IPVSLSACTTLEYLYMEGNSVTG-SIPLALNTLKSIKELDLSRNNLS 481
+ +E L + + + L+ S+++L++
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 61/414 (14%), Positives = 124/414 (29%), Gaps = 43/414 (10%)
Query: 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLH------SRVPESL 151
L+ ++L +++ + P ++L +++I+ R+
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPD---TYTSLVSLNISCLASEVSFSALERLVTRC 210
Query: 152 GQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP--VNIGFSLPNLEDL 209
L+SL + L L L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270
Query: 210 SVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS--GQVKIDFNRLPNLFRLNFGKNNLGTG 267
S + LP S S L L+LS VK+ + P L RL
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL-LCQCPKLQRLWVLDY----- 324
Query: 268 AIGDLDFIAHLTNCSKLE------AFGLDTNIFGGVLPLSIANLSS------TIILFTMG 315
I D + C L + + + ++S +++ F
Sbjct: 325 -IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383
Query: 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLML 375
+ + +N N+ F L + P + L + + +C++L
Sbjct: 384 MTNA--ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-----GFGAIVEHCKDLRR 436
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG-SIPTEVGNLKNLVQLDLSENHFSI 434
LS+S LT + I +L ++ + + + +L +L++ + F
Sbjct: 437 LSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495
Query: 435 E-IPVSLSACTTLEYLYMEGNSVT-GSIPLALNTLKSIKELDLSRNNLSGHIPE 486
+ + + S T+ L+M SV+ G+ L + + + PE
Sbjct: 496 KALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPE 549
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 369 NCQNLMLLSV-------------SNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415
+C L + ++N+L + G L + L+L N LT I
Sbjct: 14 DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPN 72
Query: 416 V-GNLKNLVQLDLSENHFSIEIPVSL-SACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKE 472
++ +L L EN EI + L+ L + N ++ + + L S+
Sbjct: 73 AFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTS 130
Query: 473 LDLSRN 478
L+L+ N
Sbjct: 131 LNLASN 136
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 47/204 (23%), Positives = 66/204 (32%), Gaps = 52/204 (25%)
Query: 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLD 290
+ LDL + F L L LN N L T L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT----------------------LS 75
Query: 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV-KNLVNLNGFGLEYNQLTGPIPH 349
+F + L L++ NQ+ ++P V +L L+ L NQL +P
Sbjct: 76 AGVFDDLTELGTLGLAN---------NQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPS 124
Query: 350 AIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT 409
V L + L L + N+L ++P LT L LS N L
Sbjct: 125 ------------GVFDRLTKLKELRL---NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 410 GSIPTEV-GNLKNLVQLDLSENHF 432
S+P L L + L N F
Sbjct: 169 -SVPHGAFDRLGKLQTITLFGNQF 191
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 3e-04
Identities = 19/177 (10%), Positives = 50/177 (28%), Gaps = 23/177 (12%)
Query: 321 GTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG----------NC 370
+ P + + LN ++ L++L++ N
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 371 QNLMLLSVSNNKLTGALPPQILGILTLSIL-----LDLSGNLLTGSIPT---EVGNLKNL 422
+ L+L + + + L + + E L L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 423 VQLDLSENHFS----IEIPVSLSACTTLEYLYMEGNSVTGSIPLAL-NTLKSIKELD 474
+D+S + + + L+++ M+ N ++ + L +L ++
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.84 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.83 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.83 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.73 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.59 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.52 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.46 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.45 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.45 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.43 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.43 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.41 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.4 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.39 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.38 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.34 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.34 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.23 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.22 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.21 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.2 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.01 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.87 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.86 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.77 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.66 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.53 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.5 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.3 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.26 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.23 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.17 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.38 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.18 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.63 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.36 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-61 Score=513.76 Aligned_cols=478 Identities=28% Similarity=0.450 Sum_probs=313.0
Q ss_pred cCCCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccc---cC----------
Q 041374 27 CFGLHSNETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGF---LS---------- 93 (513)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~---~~---------- 93 (513)
|++..+.+.|+.||++||+++.||. .+.+|..+.+||+|.||.|+ .++|+.|+|+++.+.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 3444457889999999999999988 89999888899999999998 47999999998877764 22
Q ss_pred -------------ccccCCCCCCEEeCCCCCCcccCCC--CC-----------------CCCCcc---------------
Q 041374 94 -------------PYVGNLSFLRFVNLASNNLHGEIPY--EH-----------------GQLPPS--------------- 126 (513)
Q Consensus 94 -------------~~l~~l~~L~~L~L~~n~l~~~~~~--~~-----------------~~l~~~--------------- 126 (513)
..++++++|++|+|++|.++|.+|. .+ +.+|..
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 3556666677777776666654443 21 111111
Q ss_pred -----------------------------------cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC
Q 041374 127 -----------------------------------IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171 (513)
Q Consensus 127 -----------------------------------~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 171 (513)
+..+++|++|++++|.+.+.+|. ++.+++|++|++++|.+++..
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 13445555555666666555555 777888888888888888777
Q ss_pred cccccCCCCCcEEeCCCCcCcc----------------------cCCccccCCCCCCCEEEccCCcccccCcccccCCCC
Q 041374 172 HSSIFNISSLELIYPLENRLEG----------------------SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASN 229 (513)
Q Consensus 172 ~~~~~~l~~L~~L~l~~n~l~~----------------------~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 229 (513)
|..+.++++|++|++++|.+.+ .+|..++..+++|++|++++|++++.+|..++++++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 7777777777777777766654 455555433477777777777777777777777777
Q ss_pred CCeeeCcccccccccccc-ccCCCCCcEEEcCCCCCCCCCCCCch-----------------------------------
Q 041374 230 LQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLD----------------------------------- 273 (513)
Q Consensus 230 L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~----------------------------------- 273 (513)
|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+.
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 888888777777666654 77777777777777766543332221
Q ss_pred ----------hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcC
Q 041374 274 ----------FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQL 343 (513)
Q Consensus 274 ----------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 343 (513)
.+..+..+++|+.|++++|.+.+..|..++.++. ++.++++.|.+.+.+|..+..+++|++|++++|++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 1112233334444444444444444444444443 44444444444444444444555555555555555
Q ss_pred ccCCCccccC---CCCeEEe-----ccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcc
Q 041374 344 TGPIPHAIGE---LRNLQLR-----GNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTE 415 (513)
Q Consensus 344 ~~~~~~~~~~---l~~L~l~-----~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~ 415 (513)
++.+|..+.. ++.|+++ +.+|.++..+++|++|++++|++.|.+|..+..... |++|++++|++++.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEESBCCGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccCCcCChH
Confidence 5555544332 3333332 235555666666666666666666666655544333 366666666665554433
Q ss_pred c----------------------------------------------------------------------cCCCCCCEE
Q 041374 416 V----------------------------------------------------------------------GNLKNLVQL 425 (513)
Q Consensus 416 ~----------------------------------------------------------------------~~l~~L~~L 425 (513)
+ ..+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 2 224567777
Q ss_pred eCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 426 DLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 426 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
|+++|.++|.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|||++|+++|.+|+.+..++.| ++|+++|+++
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 888888877888888888888888888888888888888888888888888888888888888888888 8888888888
Q ss_pred ccCCCC
Q 041374 505 HHKPKV 510 (513)
Q Consensus 505 ~~~p~~ 510 (513)
|.||..
T Consensus 718 g~iP~~ 723 (768)
T 3rgz_A 718 GPIPEM 723 (768)
T ss_dssp EECCSS
T ss_pred ccCCCc
Confidence 888864
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=441.85 Aligned_cols=440 Identities=22% Similarity=0.286 Sum_probs=344.3
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCC--------CCCCCCCCCCCcc---cceeeCCCCCcEEEEEcCCCCCccccCccccCC
Q 041374 31 HSNETDRLAYLAIKSQLQDPLGV--------TKSWNNSISLCQW---TGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNL 99 (513)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~c~~---~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l 99 (513)
+....|+.||.++++++.++... ..+|+.+.++|.| .||.|+.. ++|+.|+|+++++.|.+|+.++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 34567999999999998744322 2379988899999 99999865 899999999999999999999999
Q ss_pred CCCCEEeCCCCCC------cc------cCC---------------------C----------------------------
Q 041374 100 SFLRFVNLASNNL------HG------EIP---------------------Y---------------------------- 118 (513)
Q Consensus 100 ~~L~~L~L~~n~l------~~------~~~---------------------~---------------------------- 118 (513)
++|++|+|++|.+ .+ .+| .
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 9999999999965 22 000 0
Q ss_pred ---------CCCCCCcccCCCCCCCEEEeecCccccc-----------------CccccC--CCCCCCEEEcccccCCcc
Q 041374 119 ---------EHGQLPPSIGNLSALQNIDIAGNRLHSR-----------------VPESLG--QLRSLSFLDISENAFSGM 170 (513)
Q Consensus 119 ---------~~~~l~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~i~~~ 170 (513)
.+..+|+.++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.
T Consensus 185 ~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 1112677788888888888888888875 777877 888888888888888888
Q ss_pred CcccccCCCCCcEEeCCCCc-Ccc-cCCccccCCC------CCCCEEEccCCcccccCcc--cccCCCCCCeeeCccccc
Q 041374 171 FHSSIFNISSLELIYPLENR-LEG-SLPVNIGFSL------PNLEDLSVRQNNYTGSLPH--SLSNASNLQLLDLSLNHF 240 (513)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~n~-l~~-~lp~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~~ 240 (513)
+|..+.++++|++|++++|+ +++ .+|..++ .+ ++|++|++++|+++ .+|. .++++++|++|++++|.+
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 88888888888888888887 776 6777665 44 78888888888888 7777 788888888888888888
Q ss_pred cccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcc-cccccccccccCCcCchhhhccc-cccceEEecccc
Q 041374 241 SGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK-LEAFGLDTNIFGGVLPLSIANLS-STIILFTMGLNQ 318 (513)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~l~~~~ 318 (513)
.+.+| .+..+++|++|++++|.+.. .+..+..+++ |+.|++++|.+. .+|..+.... ..++.+++++|.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQITE-------IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEEE-------CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred ccchh-hhCCCCCCCEEECCCCcccc-------ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 87777 77888888888888887763 2345667777 888888888877 5666555443 137888888888
Q ss_pred ceecCCcccc-------CCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHH
Q 041374 319 IYGTIPPEVK-------NLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQI 391 (513)
Q Consensus 319 ~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~ 391 (513)
+.+..|..+. .+++|++|++++|.++ .+|.. .+..+++|++|++++|+++ .+|...
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---------------~~~~l~~L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKE---------------LFSTGSPLSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTH---------------HHHTTCCCSEEECCSSCCS-BCCSSS
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHH---------------HHccCCCCCEEECCCCCCC-CcCHHH
Confidence 8877777776 6678888888888877 33321 1234678899999999888 777766
Q ss_pred Hhhhc-------ccceEEccCCcCcccCCcccc--CCCCCCEEeCCCCccCccCCccccCCCCCCEEeC------CCCcc
Q 041374 392 LGILT-------LSILLDLSGNLLTGSIPTEVG--NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM------EGNSV 456 (513)
Q Consensus 392 ~~~~~-------~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L------~~n~l 456 (513)
+.... .|++|++++|+++ .+|..+. .+++|++|++++|++.+ +|..+..+++|++|++ ++|++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 65442 5688999999988 6777776 88999999999999986 8888888999999999 45777
Q ss_pred cccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 457 TGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
.+.+|..+..+++|++|++++|++ +.+|..+. +.| .+|+++|++.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 888888898899999999999999 57787655 677 9999999765
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-51 Score=435.83 Aligned_cols=437 Identities=21% Similarity=0.276 Sum_probs=305.7
Q ss_pred CCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCC-----CC--Ccc------------cceeeCCCCCcEEEEEcCCCCCcc
Q 041374 30 LHSNETDRLAYLAIKSQLQDPLGVTKSWNNSI-----SL--CQW------------TGVTCGHRHRRVTKLVLRNQSIGG 90 (513)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~v~c~~~~~~v~~L~l~~~~~~~ 90 (513)
+++...|+.||++||+++.+| +|.... ++ |.| .||.|+. .++|+.|+|+++++.|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 345678999999999999877 564332 45 999 9999986 5899999999999999
Q ss_pred ccCccccCCCCCCEEeC-CCCCCcccCCCCC-------------------------------------------------
Q 041374 91 FLSPYVGNLSFLRFVNL-ASNNLHGEIPYEH------------------------------------------------- 120 (513)
Q Consensus 91 ~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~------------------------------------------------- 120 (513)
.+|+.++++++|++|+| ++|.++|..|...
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 99999999999999999 8887776633210
Q ss_pred -------------CC-------CCcccCCCCCCCEEEeecCcccc-----------------cCccccC--CCCCCCEEE
Q 041374 121 -------------GQ-------LPPSIGNLSALQNIDIAGNRLHS-----------------RVPESLG--QLRSLSFLD 161 (513)
Q Consensus 121 -------------~~-------l~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~l~--~l~~L~~L~ 161 (513)
+. +|..++++++|++|++++|.+++ .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 01 66677777777777777777776 2666666 777777777
Q ss_pred cccccCCccCcccccCCCCCcEEeCCCCc-Ccc-cCCcccc------CCCCCCCEEEccCCcccccCcc--cccCCCCCC
Q 041374 162 ISENAFSGMFHSSIFNISSLELIYPLENR-LEG-SLPVNIG------FSLPNLEDLSVRQNNYTGSLPH--SLSNASNLQ 231 (513)
Q Consensus 162 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~-~lp~~~~------~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~ 231 (513)
+++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+. ..+++|++|++++|.++ .+|. .++++++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 77777777777777777777777777776 665 5665443 13347777777777777 6676 677777777
Q ss_pred eeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcc-cccccccccccCCcCchhhhccc-ccc
Q 041374 232 LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK-LEAFGLDTNIFGGVLPLSIANLS-STI 309 (513)
Q Consensus 232 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~-~~l 309 (513)
+|++++|.+. .+| .++.+++|+.|++++|.+.. ++..+..+++ |+.|++++|.+. .+|..+.... ..+
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred EEECCCCCcc-cch-hhcCCCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 7777777776 555 67777777777777777663 2234566666 777777777776 4555544432 126
Q ss_pred ceEEeccccceecCCccc---c--CCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCc
Q 041374 310 ILFTMGLNQIYGTIPPEV---K--NLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT 384 (513)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~ 384 (513)
+.++++.|.+.+.+|... . ..++|+.|++++|.+. .+|..+ +..+++|+.|++++|.+.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~---------------~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL---------------FATGSPISTIILSNNLMT 710 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH---------------HHTTCCCSEEECCSCCCS
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH---------------HccCCCCCEEECCCCcCC
Confidence 777777777766554321 1 2346777777777776 333221 124567777777777776
Q ss_pred ccChHHHHhhhc-------ccceEEccCCcCcccCCcccc--CCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCC--
Q 041374 385 GALPPQILGILT-------LSILLDLSGNLLTGSIPTEVG--NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEG-- 453 (513)
Q Consensus 385 ~~~p~~~~~~~~-------~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-- 453 (513)
.+|..++.... .|+.|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|++
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred -ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 66666554332 4577777777777 5666665 77777777777777775 677777777777777765
Q ss_pred ----CcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccc
Q 041374 454 ----NSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCH 505 (513)
Q Consensus 454 ----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~ 505 (513)
|++.+.+|..+..+++|+.|+|++|++ +.+|..+. +.| .+||++|++..
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 666667777777777777777777777 56676544 466 77777777653
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=430.28 Aligned_cols=422 Identities=30% Similarity=0.500 Sum_probs=320.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCC---------------CCCCcccCCC-CCCCEEEee
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEH---------------GQLPPSIGNL-SALQNIDIA 139 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---------------~~l~~~~~~l-~~L~~L~l~ 139 (513)
.+++.|++++|.+.+.++..+.++++|++|++++|.+++.+|... +.+|..+... ++|++|+++
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 356666666666666666666666666666666666665544210 1344444332 555555555
Q ss_pred cCcccccCccccCCCCCCCEEEcccccCCccCccc-ccCCCCCcEEeCCCCcCcccCCccccCCCC-CCCEEEccCCccc
Q 041374 140 GNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS-IFNISSLELIYPLENRLEGSLPVNIGFSLP-NLEDLSVRQNNYT 217 (513)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~-~L~~L~l~~n~l~ 217 (513)
+|.+++.+|..++.+++|++|++++|.+++.+|.. +.++++|++|++++|.+.+.+|..+. .++ +|++|++++|.++
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFS 381 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH-HHTTTCSEEECCSSEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH-hhhcCCcEEEccCCCcC
Confidence 55555555555555555555555555555444433 55555566666655555555555554 333 5666666666665
Q ss_pred ccCcccccC--CCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccC
Q 041374 218 GSLPHSLSN--ASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 218 ~~~~~~l~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 295 (513)
+.+|..+.. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI------PSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC------CGGGGGCTTCCEEECCSSCCC
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc------cHHHhcCCCCCEEECCCCccc
Confidence 555555544 667777888888777778888888888888888888877633 356788899999999999999
Q ss_pred CcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccC---CCCeEE-----eccCCccc
Q 041374 296 GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGE---LRNLQL-----RGNVPSSL 367 (513)
Q Consensus 296 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~---l~~L~l-----~~~~~~~l 367 (513)
+.+|..+..++. ++.++++.|++.+.+|..+..+++|++|++++|++++.+|.++.. ++.|++ +|.+|..+
T Consensus 456 ~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 456 GEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp SCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred CcCCHHHcCCCC-ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 999999998887 999999999999999999999999999999999999999987765 455554 44688899
Q ss_pred cCCCCCCEEecccCcCcccChHHHHhh-----------------------------------------------------
Q 041374 368 GNCQNLMLLSVSNNKLTGALPPQILGI----------------------------------------------------- 394 (513)
Q Consensus 368 ~~~~~L~~L~ls~n~l~~~~p~~~~~~----------------------------------------------------- 394 (513)
..+++|+.|++++|.+.|.+|..++..
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 999999999999999999999876542
Q ss_pred ----------------hcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc
Q 041374 395 ----------------LTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 395 ----------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 458 (513)
...++.|++++|+++|.+|..++.+++|+.|++++|.++|.+|..++.+++|+.|||++|+++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 1346789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCc-cccc
Q 041374 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIND-FCHH 506 (513)
Q Consensus 459 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~-l~~~ 506 (513)
.+|..+..++.|++||+++|+++|.+|+. ..+..+ ...+.+|+ ++|.
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 99999999999999999999999999975 334444 55566775 7764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=401.08 Aligned_cols=437 Identities=20% Similarity=0.197 Sum_probs=300.9
Q ss_pred CCCCCCCCc--ccceeeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc
Q 041374 57 WNNSISLCQ--WTGVTCGHR---------HRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP 125 (513)
Q Consensus 57 w~~~~~~c~--~~~v~c~~~---------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 125 (513)
|.+..+.|. +..+.|... ..+++.|++++|.+.+..+..+.++++|++|++++|.+.+. .|.
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~ 75 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-------HED 75 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-------CTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-------Chh
Confidence 333434443 445777532 25799999999999998899999999999999999998843 356
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
.|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+.-+..+. .+++
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~ 154 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEK 154 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTT
T ss_pred hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcc
Confidence 789999999999999999998899999999999999999999988788899999999999999999852223333 4889
Q ss_pred CCEEEccCCcccccCcccccCCCCCC--eeeCcccccccccccc------------------------------------
Q 041374 206 LEDLSVRQNNYTGSLPHSLSNASNLQ--LLDLSLNHFSGQVKID------------------------------------ 247 (513)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~~~~~~~~~------------------------------------ 247 (513)
|++|++++|.+++..+..++.+++|+ .|++++|.+.+..+..
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence 99999999999877777777888777 7777777765443322
Q ss_pred ---------------------------------------ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccc
Q 041374 248 ---------------------------------------FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFG 288 (513)
Q Consensus 248 ---------------------------------------~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~ 288 (513)
|..+++|++|++++|.++. .+..+..+++|+.|+
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l~~l~~L~~L~ 307 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLV 307 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSCCSCTTCCEEE
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhhcccccCCEEE
Confidence 4445566666666665553 224456667777777
Q ss_pred ccccccCCcCchhhhccccccceEEeccccceecCCc-cccCCCCCCEEeccCCcCccCC--Cc---cccCCCCeEEecc
Q 041374 289 LDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPP-EVKNLVNLNGFGLEYNQLTGPI--PH---AIGELRNLQLRGN 362 (513)
Q Consensus 289 l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~l~~L~l~~~ 362 (513)
+++|.+.+..|..+..++. ++.++++.|.+.+.+|. .+..+++|++|++++|.+.+.. +. .+.+++.|+++++
T Consensus 308 l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 308 LSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp CTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred CccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 7777777666666666665 77777777766655544 3666677777777777666443 22 2344555555443
Q ss_pred -----CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc--
Q 041374 363 -----VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE-- 435 (513)
Q Consensus 363 -----~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-- 435 (513)
.|..+..+++|++|++++|.+.+..+...+...+.|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence 3445566666666666666666554444334444456666666666655566666666666666666666542
Q ss_pred -CCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCceEEccCCcccccCCC
Q 041374 436 -IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKPK 509 (513)
Q Consensus 436 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~l~l~~n~l~~~~p~ 509 (513)
.+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|+.+.+++.+++++++|++++.+|.
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGG
T ss_pred ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHh
Confidence 22445666666666666666665556666666666666666666666666666666655666666666655554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=381.50 Aligned_cols=419 Identities=19% Similarity=0.183 Sum_probs=309.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|.++++|++|++++|.+++..|..|++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-------CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 6799999999999998888999999999999999999843 245789999999999999999998899999999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCCC---
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQ--- 231 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--- 231 (513)
+|++|++++|.+++..+..+.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..++.+++|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 99999999999998888889999999999999999985 5788877 899999999999999987777777666554
Q ss_pred -eeeCccccccccccccccCCCCCcEEEcCCCCCCCCC------------------------------------------
Q 041374 232 -LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA------------------------------------------ 268 (513)
Q Consensus 232 -~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~------------------------------------------ 268 (513)
++++++|.+.+..+..+... +|+.|++++|.+.+..
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 78898888876555555444 7888888777653100
Q ss_pred --------CCCc-h-h---------------------hcccCCCcccccccccccccCCcCchhhhccccccceEEeccc
Q 041374 269 --------IGDL-D-F---------------------IAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317 (513)
Q Consensus 269 --------~~~~-~-~---------------------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~ 317 (513)
...+ . . ...+..+++|+.|++++|.+ +.+|. + .++. ++.++++.|
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~-L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPF-LKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSS-CCEEEEESC
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C-CCCc-cceeeccCC
Confidence 0000 0 0 01234445566666666666 44442 2 4443 666666666
Q ss_pred cceecCCccccCCCCCCEEeccCCcCccCC--Ccc---ccCCCCeEEecc----CCccccCCCCCCEEecccCcCcccCh
Q 041374 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPI--PHA---IGELRNLQLRGN----VPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~---~~~l~~L~l~~~----~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
...+.. .+..+++|++|++++|.+++.. +.. +.+++.|+++++ +|..+..+++|+.|++++|++.+..|
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC
Confidence 444333 4456777888888888776542 332 345666666553 45666777888888888887776555
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEeCCCCcccccccccccCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE-IPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 467 (513)
...+...+.|++|++++|++.+..|..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..|..+..+
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 33444445557888888887777777777777788888888777763 57777777777778887777777777777777
Q ss_pred CCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCC
Q 041374 468 KSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKV 510 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~ 510 (513)
++|++|++++|++++.+|..+..++.| ++++++|+++ .+|..
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 777777777777777777777777777 7777777777 55544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=376.04 Aligned_cols=415 Identities=21% Similarity=0.183 Sum_probs=315.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCC--
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQ-- 153 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~-- 153 (513)
.+++.|++++|.+.+..+..|.++++|++|++++|.+++..| ..|+++++|++|++++|.+++..+..+.+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-------TALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-------TTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-------hhhcccccccEeeccccCcccCCcchhccCC
Confidence 567888888888877777778888888888888887774433 23444444444444444444433344444
Q ss_pred ----------------------CCCCCEEEcccccCCccCcccccCCCCCc--EEeCCCCcCcccCCccccCCC------
Q 041374 154 ----------------------LRSLSFLDISENAFSGMFHSSIFNISSLE--LIYPLENRLEGSLPVNIGFSL------ 203 (513)
Q Consensus 154 ----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~l~~n~l~~~lp~~~~~~l------ 203 (513)
+++|++|++++|.+++..+..+..+++|+ .+++++|.+.+..|..+. ..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccc
Confidence 45555555555555544444555555555 555555555432222111 00
Q ss_pred ---------------------------------------------CCCCEEEccCCcccccCcccccCCCCCCeeeCccc
Q 041374 204 ---------------------------------------------PNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLN 238 (513)
Q Consensus 204 ---------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 238 (513)
.+|+++++++|.+++..+..+..+++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 04556666666666555566888999999999999
Q ss_pred cccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCch-hhhccccccceEEeccc
Q 041374 239 HFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPL-SIANLSSTIILFTMGLN 317 (513)
Q Consensus 239 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~l~~l~l~~~ 317 (513)
.+. .+|..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+. .+..++. ++.++++.|
T Consensus 289 ~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n 360 (606)
T 3t6q_A 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLC------QISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LRELDLSHD 360 (606)
T ss_dssp CCS-CCCSSCCSCTTCCEEECTTCCCSBGG------GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT-CCEEECCSS
T ss_pred ccC-CCChhhcccccCCEEECccCCcCcCc------hhhhhccCcCCEEECCCCCcccccchhhhhccCc-CCEEECCCC
Confidence 998 67888999999999999999988632 35677889999999999998866655 4677766 999999999
Q ss_pred cceecC--CccccCCCCCCEEeccCCcCccCCCccc---cCCCCeEEecc-----CC-ccccCCCCCCEEecccCcCccc
Q 041374 318 QIYGTI--PPEVKNLVNLNGFGLEYNQLTGPIPHAI---GELRNLQLRGN-----VP-SSLGNCQNLMLLSVSNNKLTGA 386 (513)
Q Consensus 318 ~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~l~~~-----~~-~~l~~~~~L~~L~ls~n~l~~~ 386 (513)
.+.+.. +..+..+++|++|++++|.+.+..+..+ .+++.|+++++ .+ ..+..+++|++|++++|.+.+.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 998765 7788999999999999999987767655 45666776653 33 3478899999999999999866
Q ss_pred ChHHHHhhhcccceEEccCCcCccc---CCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccc
Q 041374 387 LPPQILGILTLSILLDLSGNLLTGS---IPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLA 463 (513)
Q Consensus 387 ~p~~~~~~~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 463 (513)
.|..+.. .+.|++|++++|++++. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..
T Consensus 441 ~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 441 SEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp CTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred CHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 6665544 45569999999999863 3356889999999999999999888999999999999999999999999999
Q ss_pred ccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 464 LNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 464 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
+..++.| .|++++|++++.+|..+..++.| ++++++|++++..+
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999 99999999999999999999999 99999999987655
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=375.24 Aligned_cols=418 Identities=20% Similarity=0.194 Sum_probs=252.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..++++++|++|++++|.+++..+..|.+++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-------EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-------CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-------CHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 5788889988888887777888888888888888888743 244567777777777777777765445677777
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCccccc--CCCCCCee
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLS--NASNLQLL 233 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L 233 (513)
+|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+. .+++|++|++++|.+++..+..+. .+++|++|
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 777777777777766667777777777777777777754444444 677777777777777655444432 34666666
Q ss_pred eCccccccccccccccCC---------------------------CC--------------------------CcEEEcC
Q 041374 234 DLSLNHFSGQVKIDFNRL---------------------------PN--------------------------LFRLNFG 260 (513)
Q Consensus 234 ~L~~n~~~~~~~~~~~~l---------------------------~~--------------------------L~~L~L~ 260 (513)
++++|.+.+..+..+..+ ++ |++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 666666655544443332 22 4444444
Q ss_pred CCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecccccee-----cCCc----cccCCC
Q 041374 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG-----TIPP----EVKNLV 331 (513)
Q Consensus 261 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~----~~~~~~ 331 (513)
+|.+.+.. +..+..+++|+.|++++|.+.+..|..+..+.. ++.++++.+...+ .+|. .+..++
T Consensus 257 ~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 257 YNNLNVVG------NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp TSCCCEEC------TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT-CCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCCcCccC------cccccCcccccEeeCCCCccCccChhhhcCCCC-ccEEeccchhhhcccccccccccChhhcccCC
Confidence 44443321 123455566666666666666555544443332 3333333221111 1111 233344
Q ss_pred CCCEEeccCCcCccCCCcccc-------------------------------CCCCeEEecc-----CCccccCCCCCCE
Q 041374 332 NLNGFGLEYNQLTGPIPHAIG-------------------------------ELRNLQLRGN-----VPSSLGNCQNLML 375 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~~~~~-------------------------------~l~~L~l~~~-----~~~~l~~~~~L~~ 375 (513)
+|++|++++|.+.+..+..+. .++.|+++++ .|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 444444444444443332222 2333333222 3445666777777
Q ss_pred EecccCcCcccChHHHHhhhcccceEEccCCcCcc--------------------------cCCccccCCCCCCEEeCCC
Q 041374 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG--------------------------SIPTEVGNLKNLVQLDLSE 429 (513)
Q Consensus 376 L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~--------------------------~~~~~~~~l~~L~~L~l~~ 429 (513)
|++++|.+.+.+|...+.....+++|++++|++.+ ..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 77777777666664444444455666666666543 3445556666677777777
Q ss_pred CccCccCCccccCCCCCCEEeCCCCccccccc--------ccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccC
Q 041374 430 NHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP--------LALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETI 500 (513)
Q Consensus 430 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~ 500 (513)
|.+.+..+..+.++++|++|++++|++++..+ ..+..+++|+.|++++|+++...+..|.+++.| .+++++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 77765555566777777777777777664321 125667777777777777774444467778888 888888
Q ss_pred CcccccCC
Q 041374 501 NDFCHHKP 508 (513)
Q Consensus 501 n~l~~~~p 508 (513)
|++++-.|
T Consensus 570 N~l~~l~~ 577 (680)
T 1ziw_A 570 NNLNTLPA 577 (680)
T ss_dssp SCCCCCCT
T ss_pred CCCCcCCH
Confidence 88874433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=368.66 Aligned_cols=421 Identities=19% Similarity=0.190 Sum_probs=333.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .+..|+++++|++|++++|.+++..|..|.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-------CcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 5799999999999998888999999999999999998832 244688999999999999999998888999999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC----
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL---- 230 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---- 230 (513)
+|++|++++|.++...+..+.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..++.+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 99999999999998877779999999999999999985 4688777 89999999999999997777788888888
Q ss_pred CeeeCccccccccccccccCCCCCcEEEcCCCCCCCC-------------------------------CCCCc-------
Q 041374 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTG-------------------------------AIGDL------- 272 (513)
Q Consensus 231 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-------------------------------~~~~~------- 272 (513)
..+++++|.+.+..+..+... +|+.|++++|..... ....+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 889999999887777666555 677777766521100 00000
Q ss_pred --------------hhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccce------------------
Q 041374 273 --------------DFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIY------------------ 320 (513)
Q Consensus 273 --------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~------------------ 320 (513)
..+..+..+++|+.|++++|.+.+ +|.++... .++.++++.|.+.
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~--~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF--GWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC--CCSEEEEESCBCSSCCBCBCSSCCEEEEESC
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC--CccEEeeccCcccccCcccccccCEEeCcCC
Confidence 012334556677777777776653 44444444 2555555555544
Q ss_pred ---ecCCccccCCCCCCEEeccCCcCccCC--Cc---cccCCCCeEEecc----CCccccCCCCCCEEecccCcCcccCh
Q 041374 321 ---GTIPPEVKNLVNLNGFGLEYNQLTGPI--PH---AIGELRNLQLRGN----VPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 321 ---~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~l~~L~l~~~----~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
+..+. ..+++|++|++++|.+++.. +. .+.+++.|+++++ ++..+..+++|++|++++|.+.+..+
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc
Confidence 32222 45677777777777776432 22 3456666776664 34447788999999999998886666
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccC-ccCCccccCCCCCCEEeCCCCcccccccccccCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFS-IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 467 (513)
...+...+.|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 445555666799999999999888888999999999999999997 5789999999999999999999998889999999
Q ss_pred CCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCC
Q 041374 468 KSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKV 510 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~ 510 (513)
++|+.|++++|++++.+|..+..++.| ++++++|++++..|..
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999998888889999999 9999999999998853
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-44 Score=384.51 Aligned_cols=437 Identities=19% Similarity=0.196 Sum_probs=295.9
Q ss_pred CcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcc
Q 041374 64 CQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRL 143 (513)
Q Consensus 64 c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l 143 (513)
|.|..|.+ ...+++.|+|++|.+.+..+..+.++++|++|++++|...+.++ |..|+++++|++|++++|.+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~------~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID------KEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC------TTTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC------HHHhcCCCCCCEEECCCCcC
Confidence 45666665 45789999999999999989999999999999999997664443 55789999999999999999
Q ss_pred cccCccccCCCCCCCEEEcccccCCccCccc--ccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc
Q 041374 144 HSRVPESLGQLRSLSFLDISENAFSGMFHSS--IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221 (513)
Q Consensus 144 ~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (513)
.+..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9988999999999999999999999866654 89999999999999999865554333489999999999999988878
Q ss_pred ccccCC--CCCCeeeCccccccccccccccCCCC------CcEEEcCCCCCCCCCCCCch--------------------
Q 041374 222 HSLSNA--SNLQLLDLSLNHFSGQVKIDFNRLPN------LFRLNFGKNNLGTGAIGDLD-------------------- 273 (513)
Q Consensus 222 ~~l~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~------L~~L~L~~n~~~~~~~~~~~-------------------- 273 (513)
..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+.....+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 777766 78888888888887777666665554 78888877765443221111
Q ss_pred ------------------------------------hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccc
Q 041374 274 ------------------------------------FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLN 317 (513)
Q Consensus 274 ------------------------------------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~ 317 (513)
.+..+..+++|+.|++++|.+.+..+..+..++. ++.++++.|
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N 324 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYN 324 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCC
Confidence 0112233444444444444444444444444443 455555555
Q ss_pred cceecCCccccCCCCCCEEeccCCcCccCCCcc---ccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH-----
Q 041374 318 QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHA---IGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP----- 389 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~----- 389 (513)
.+.+..|..+..+++|++|++++|.+.+..+.. +.+++.|+++++-...+..+++|+.|++++|++. .+|.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~-~l~~~~~~l 403 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTA 403 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCC-CCCCCCTTC
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcc-ccccccccc
Confidence 544444444455555555555555444333322 2334444444443333333344444444444333 2221
Q ss_pred ----------------HHHhhhcccceEEccCCcCcccCCc-cccCCCCCCEEeCCCCccC-----ccCCccccCCCCCC
Q 041374 390 ----------------QILGILTLSILLDLSGNLLTGSIPT-EVGNLKNLVQLDLSENHFS-----IEIPVSLSACTTLE 447 (513)
Q Consensus 390 ----------------~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~ 447 (513)
......+.|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..|..+++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 1112233446777777776643322 2445667777777777765 23345577788888
Q ss_pred EEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
.|+|++|++++..|..+..+++|+.|+|++|++++..|..+. +.| .+|+++|+++|.+|..+.
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence 888888888877777788888888888888888876666655 667 888888888888887653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=368.56 Aligned_cols=424 Identities=19% Similarity=0.224 Sum_probs=244.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEeecCcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIAGNRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 154 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.++ .+|. .|+++++|++|++++|.+.+..|..|.++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS--------QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC--------CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC--------ccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 46777777777777766667777777777777777766 3333 45666666666666666665555556666
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCcccc-CCCCCCCEEEcc---------------------
Q 041374 155 RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIG-FSLPNLEDLSVR--------------------- 212 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~-~~l~~L~~L~l~--------------------- 212 (513)
++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+. ..+++|++|+++
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 6666666666666655555555666666666666555422221110 012333333333
Q ss_pred ------------------------------CCcccccCcccccCCCC--CCeeeCccccccccccccccCCCCCcEEEcC
Q 041374 213 ------------------------------QNNYTGSLPHSLSNASN--LQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 213 ------------------------------~n~l~~~~~~~l~~l~~--L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
+|.+++..|..+..++. |++|++++|.+.+..+..+..+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 33333333333443332 6777777777666666666777777777777
Q ss_pred CCCCCCCCCCCch-----------------------hhc----ccCCCcccccccccccccCCcCchhhhcccc------
Q 041374 261 KNNLGTGAIGDLD-----------------------FIA----HLTNCSKLEAFGLDTNIFGGVLPLSIANLSS------ 307 (513)
Q Consensus 261 ~n~~~~~~~~~~~-----------------------~~~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~------ 307 (513)
+|.+.+..+..+. .+. .+..+++|+.|++++|.+.+..+..+..++.
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 7766543322111 000 3455667777777777776665555444332
Q ss_pred ---------------------ccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCC-ccc---cCCCCeEEecc
Q 041374 308 ---------------------TIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAI---GELRNLQLRGN 362 (513)
Q Consensus 308 ---------------------~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~---~~l~~L~l~~~ 362 (513)
.++.++++.|++.+..|..+..+++|++|++++|.+.+.++ ..+ .+++.|+++++
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 24445555556666666677777777777777777765444 223 33444443332
Q ss_pred -------------------------------CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCccc
Q 041374 363 -------------------------------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGS 411 (513)
Q Consensus 363 -------------------------------~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~ 411 (513)
.|..+..+++|+.|++++|+++ .+++..+.....|++|++++|++++.
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCcccc
Confidence 3444555666666666666665 33333333344446666666666532
Q ss_pred CC--------ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 412 IP--------TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 412 ~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
.+ ..+..+++|++|++++|.+....+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 11 1245566666666666666632223466666677777777766654455556666777777777776666
Q ss_pred cchhhh-cccCc-eEEccCCcccccCC
Q 041374 484 IPEFLE-NLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 484 ~p~~l~-~l~~l-~l~l~~n~l~~~~p 508 (513)
.|..+. .++.+ .+++++|++...-+
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ChhHhcccccccCEEEccCCCcccCCc
Confidence 665555 56666 77777776665544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=370.17 Aligned_cols=380 Identities=17% Similarity=0.230 Sum_probs=285.6
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcc------------------------------------
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRL------------------------------------ 143 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l------------------------------------ 143 (513)
.+++.|+|+++.+.|. +|++++++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~-------lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-------VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTSCCEEE-------ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCC
T ss_pred CCEEEEEecCcccCCc-------CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccC
Confidence 4788999999999965 456899999999999999854
Q ss_pred ------------------------------------------cccCccccCCCCCCCEEEcccccCCcc-----------
Q 041374 144 ------------------------------------------HSRVPESLGQLRSLSFLDISENAFSGM----------- 170 (513)
Q Consensus 144 ------------------------------------------~~~~p~~l~~l~~L~~L~Ls~n~i~~~----------- 170 (513)
++ +|..++++++|++|++++|.+++.
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccccc
Confidence 23 566667777777777777777664
Q ss_pred ------Cccccc--CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc-ccc-cCcccccCC------CCCCeee
Q 041374 171 ------FHSSIF--NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTG-SLPHSLSNA------SNLQLLD 234 (513)
Q Consensus 171 ------~~~~~~--~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~ 234 (513)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ .+|..++.+ ++|++|+
T Consensus 233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred chhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 666666 777777777777777767776665 67777777777776 666 666666554 6777777
Q ss_pred Cccccccccccc--cccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceE
Q 041374 235 LSLNHFSGQVKI--DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312 (513)
Q Consensus 235 L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 312 (513)
+++|.++ .+|. .++++++|++|++++|.+.+. .+ .+..+++|+.|++++|.+. .+|..+..++..++.+
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~------ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK------LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE------CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc------hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 7777776 5666 677777777777777766642 12 4556667777777777766 5566666655447777
Q ss_pred EeccccceecCCccccCCC--CCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHH
Q 041374 313 TMGLNQIYGTIPPEVKNLV--NLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQ 390 (513)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~ 390 (513)
++++|.+. .+|..+.... +|++|++++|.+.+..|..++... .....+++|++|++++|++. .+|..
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~---------~~~~~~~~L~~L~Ls~N~l~-~lp~~ 451 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD---------PTPFKGINVSSINLSNNQIS-KFPKE 451 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC---------SSCCCCCCEEEEECCSSCCC-SCCTH
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc---------cccccCCCCCEEECcCCccC-cCCHH
Confidence 77777766 5666555543 677777777777665555433110 00115679999999999998 88888
Q ss_pred HHhhhcccceEEccCCcCcccCCccccC-C-------CCCCEEeCCCCccCccCCcccc--CCCCCCEEeCCCCcccccc
Q 041374 391 ILGILTLSILLDLSGNLLTGSIPTEVGN-L-------KNLVQLDLSENHFSIEIPVSLS--ACTTLEYLYMEGNSVTGSI 460 (513)
Q Consensus 391 ~~~~~~~l~~L~l~~n~l~~~~~~~~~~-l-------~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~ 460 (513)
++...+.|++|++++|+++ .+|..... . ++|++|++++|.+. .+|..+. .+++|+.|+|++|++++ +
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence 8877777799999999999 55554332 2 39999999999999 7898887 99999999999999996 8
Q ss_pred cccccCCCCCCEEEC------CCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 461 PLALNTLKSIKELDL------SRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 461 ~~~~~~l~~L~~L~l------~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
|..+..+++|+.|++ ++|++.+.+|..+..++.| ++++++|++ +.+|..+.
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 999999999999999 5688899999999999999 999999999 89998653
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=365.57 Aligned_cols=411 Identities=19% Similarity=0.190 Sum_probs=293.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|.++++|++|++++|.+++..|..|++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-------EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-------ChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 4799999999999998889999999999999999999843 245788999999999999999997777899999
Q ss_pred CCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
+|++|++++|.+++. .+..+.++++|++|++++|.+.+.+|...+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 999999999999874 5678999999999999999865577754444899999999999999988999999999999999
Q ss_pred CccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhh-----------
Q 041374 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIA----------- 303 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~----------- 303 (513)
+++|.+.......+..+++|++|++++|.+.+...... .....+++|+.|++++|.+.+..+..+.
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred cccCcccccchhhHhhcccccEEEccCCcccccccccc---chhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 99998764333334678999999999998876432111 1112233444444444433322221111
Q ss_pred ---------------------------------------------------ccccccceEEeccccceecCCccc-cCCC
Q 041374 304 ---------------------------------------------------NLSSTIILFTMGLNQIYGTIPPEV-KNLV 331 (513)
Q Consensus 304 ---------------------------------------------------~~~~~l~~l~l~~~~~~~~~~~~~-~~~~ 331 (513)
.....++.++++.|.+. .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 01112555555555544 344433 3466
Q ss_pred CCCEEeccCCcCccCCC------ccccCCCCeEEeccCC-------ccccCCCCCCEEecccCcCcccChHHHHhhhccc
Q 041374 332 NLNGFGLEYNQLTGPIP------HAIGELRNLQLRGNVP-------SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLS 398 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~------~~~~~l~~L~l~~~~~-------~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 398 (513)
+|++|++++|.+.+..| ..+.+++.|+++++-. ..+..+++|++|++++|+++ .+|..+.. .+.|
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-~~~L 412 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-PEKM 412 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-CTTC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-cccc
Confidence 66666666666665432 2234555555555422 12455666666666666665 45544332 2334
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 478 (513)
++|++++|+++ .++..+ .++|++|++++|.+++. +..+++|++|++++|+++ .+|. ...+++|+.|++++|
T Consensus 413 ~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 413 RFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp CEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS
T ss_pred cEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC
Confidence 66666666665 233222 24666677777666642 246889999999999998 6776 467899999999999
Q ss_pred CCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 479 NLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 479 ~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
++++.+|..+..++.| .+++++|++++..|
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9998888889999999 99999999988776
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=360.83 Aligned_cols=409 Identities=19% Similarity=0.147 Sum_probs=320.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|+++++|++|++++|.+.+..+..+++++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-------SPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-------ChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 6899999999999998888999999999999999998832 356788999999999999999887778899999
Q ss_pred CCCEEEcccccCCc-cCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC----CEEEccCCcccccCccc-------
Q 041374 156 SLSFLDISENAFSG-MFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL----EDLSVRQNNYTGSLPHS------- 223 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L----~~L~l~~n~l~~~~~~~------- 223 (513)
+|++|++++|.+++ .+|..+.++++|++|++++|++.+..|..+. .+.+| +++++++|.+++..+..
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcceeCcccccCceee
Confidence 99999999999876 4688899999999999999988754443332 22222 24555555444222221
Q ss_pred -------------------------------------------------------------------------ccCCCCC
Q 041374 224 -------------------------------------------------------------------------LSNASNL 230 (513)
Q Consensus 224 -------------------------------------------------------------------------l~~l~~L 230 (513)
+..+++|
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 2334445
Q ss_pred CeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccc
Q 041374 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTII 310 (513)
Q Consensus 231 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 310 (513)
+.|++++|.+. .++ .+..+++|++|++++|.+... + .+ .+++|+.|++++|...+.. .+..++. ++
T Consensus 288 ~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~l-------p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~ 353 (606)
T 3vq2_A 288 SAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQF-------P-TL-DLPFLKSLTLTMNKGSISF--KKVALPS-LS 353 (606)
T ss_dssp SEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSC-------C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTT-CC
T ss_pred CEEEecCccch-hhh-hccccccCCEEEcccccCccc-------c-cC-CCCccceeeccCCcCccch--hhccCCC-CC
Confidence 55555555553 233 566667777777777777331 1 33 7788999999998655443 4445555 89
Q ss_pred eEEeccccceec--CCccccCCCCCCEEeccCCcCccCCCcc---ccCCCCeEEecc-----CC-ccccCCCCCCEEecc
Q 041374 311 LFTMGLNQIYGT--IPPEVKNLVNLNGFGLEYNQLTGPIPHA---IGELRNLQLRGN-----VP-SSLGNCQNLMLLSVS 379 (513)
Q Consensus 311 ~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~l~~~-----~~-~~l~~~~~L~~L~ls 379 (513)
.++++.|.+.+. .|..+..+++|++|++++|.+.+ +|.. +.+++.|+++++ .+ ..+..+++|++|+++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 999999988866 47788889999999999998875 3343 345666666653 34 567889999999999
Q ss_pred cCcCcccChHHHHhhhcccceEEccCCcCcc-cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc
Q 041374 380 NNKLTGALPPQILGILTLSILLDLSGNLLTG-SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 380 ~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 458 (513)
+|.+.+..|..+... +.|++|++++|++++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++
T Consensus 433 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 999997777666554 455999999999987 478889999999999999999998889999999999999999999998
Q ss_pred cccccccCCCCCCEEECCCCCCCcccchhhhccc-Cc-eEEccCCcccccCCC
Q 041374 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS-FN-KMNETINDFCHHKPK 509 (513)
Q Consensus 459 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~l-~l~l~~n~l~~~~p~ 509 (513)
..|..+..+++|++|++++|+++ .+|..+..++ .| ++++++|++.+..|.
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 88999999999999999999999 6888799987 58 999999999886653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=366.73 Aligned_cols=378 Identities=16% Similarity=0.226 Sum_probs=295.7
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEe-ecCccccc--------------------------------
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDI-AGNRLHSR-------------------------------- 146 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l-~~n~l~~~-------------------------------- 146 (513)
.+++.|+|+++.+.|. +|+.++++++|++|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~-------ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~ 395 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-------VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395 (876)
T ss_dssp SCEEEEECTTTCCEEE-------ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred CCEEEEECccCCCCCc-------CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence 5789999999999965 4568899999999999 77754433
Q ss_pred --------------------------------------------CccccCCCCCCCEEEcccccCCc-------------
Q 041374 147 --------------------------------------------VPESLGQLRSLSFLDISENAFSG------------- 169 (513)
Q Consensus 147 --------------------------------------------~p~~l~~l~~L~~L~Ls~n~i~~------------- 169 (513)
+|..++++++|++|++++|.+++
T Consensus 396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475 (876)
T ss_dssp GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence 66677777888888888888777
Q ss_pred ----cCccccc--CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc-ccc-cCcccccCCC-------CCCeee
Q 041374 170 ----MFHSSIF--NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTG-SLPHSLSNAS-------NLQLLD 234 (513)
Q Consensus 170 ----~~~~~~~--~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~ 234 (513)
.+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ .+|..+++++ +|++|+
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence 2677766 788888888888877777777666 77788888888887 776 6676555444 788888
Q ss_pred Cccccccccccc--cccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceE
Q 041374 235 LSLNHFSGQVKI--DFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312 (513)
Q Consensus 235 L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l 312 (513)
+++|.+. .+|. .++++++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .+|..+..++..++.+
T Consensus 555 Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-------LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-------CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred eeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-------ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 8888777 6666 77778888888888877762 11 5667777888888888777 6666676666557778
Q ss_pred EeccccceecCCccccCCCC--CCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHH
Q 041374 313 TMGLNQIYGTIPPEVKNLVN--LNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQ 390 (513)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~ 390 (513)
++++|.+. .+|..+..... |+.|++++|.+.+.+|.....+. ...+++|+.|++++|.+. .+|..
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~-----------~~~~~~L~~L~Ls~N~L~-~lp~~ 691 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD-----------DYKGINASTVTLSYNEIQ-KFPTE 691 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT-----------TCCCCCEEEEECCSSCCC-SCCHH
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc-----------cccCCCcCEEEccCCcCC-ccCHH
Confidence 88887777 66666655543 77888888877765543221111 013458999999999998 89998
Q ss_pred HHhhhcccceEEccCCcCcccCCccccC--------CCCCCEEeCCCCccCccCCcccc--CCCCCCEEeCCCCcccccc
Q 041374 391 ILGILTLSILLDLSGNLLTGSIPTEVGN--------LKNLVQLDLSENHFSIEIPVSLS--ACTTLEYLYMEGNSVTGSI 460 (513)
Q Consensus 391 ~~~~~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~ 460 (513)
++...+.|+.|++++|+++ .+|..+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|++++ +
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 8877777799999999998 66655443 238999999999999 8898887 99999999999999996 8
Q ss_pred cccccCCCCCCEEECCC------CCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 461 PLALNTLKSIKELDLSR------NNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 461 ~~~~~~l~~L~~L~l~~------n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
|..+..+++|+.|+|++ |++.+.+|..+..++.| .+++++|++ +.||..+.
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 99999999999999976 88899999999999999 999999999 89998654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=348.28 Aligned_cols=393 Identities=22% Similarity=0.220 Sum_probs=302.9
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|++++|.+++.. +..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEEC-------TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCccCccC-------hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 57999999999998432 34789999999999999999998888899999999999999999999889999999
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc-cCcccccCCCCCCeeeCccccccccccccccCCCCC----
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNL---- 254 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L---- 254 (513)
+|++|++++|.+. .++......+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|
T Consensus 101 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 9999999999998 5555333389999999999999986 479999999999999999999998888888888888
Q ss_pred cEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc------------------------------------------
Q 041374 255 FRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN------------------------------------------ 292 (513)
Q Consensus 255 ~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n------------------------------------------ 292 (513)
+.+++++|.+.......+. .. +|+.+++++|
T Consensus 180 ~~L~l~~n~l~~~~~~~~~------~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFK------EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp CEEECTTCCCCEECTTTTT------TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred hhcccCCCCceecCHHHhc------cC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 8999999998876543322 11 3444444333
Q ss_pred ----------------ccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCC
Q 041374 293 ----------------IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRN 356 (513)
Q Consensus 293 ----------------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 356 (513)
.+.+..+..+..++. ++.++++.+.+. .+|..+..+ +|++|++++|.+.......+.+++.
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~ 329 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKR 329 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCE
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCc-ccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCE
Confidence 344455666666666 999999999887 578878777 8999999988887332234455555
Q ss_pred eEEeccC-----------------------------CccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCc
Q 041374 357 LQLRGNV-----------------------------PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNL 407 (513)
Q Consensus 357 L~l~~~~-----------------------------~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~ 407 (513)
|+++++. +..+..+++|++|++++|.+.+ ++.. +...+.|++|++++|.
T Consensus 330 L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EETCTTCCEEECTTSE
T ss_pred EeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc-ccccCCCCEEEccCCc
Confidence 5554431 2223344555555555555442 2222 2233344667777776
Q ss_pred CcccCC-ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccc-ccccccccCCCCCCEEECCCCCCCcccc
Q 041374 408 LTGSIP-TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT-GSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 408 l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++. +.+|..+..+++|+.|++++|++++..|
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 665444 35677888888888888888777888888899999999999887 5688888889999999999999998888
Q ss_pred hhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 486 EFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 486 ~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
..+..++.| ++++++|++++..|..++
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 889999999 999999999987776553
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=337.81 Aligned_cols=374 Identities=18% Similarity=0.175 Sum_probs=233.3
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccC-ccccCCCCCCCEEEcccccCCccCcccccCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRV-PESLGQLRSLSFLDISENAFSGMFHSSIFNI 178 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 178 (513)
++|++|++++|.+++. .|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++
T Consensus 30 ~~l~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-------NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSCCCEE-------CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCCccCcC-------ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 4566666666666522 2335566666666666666665333 4456666666666666666666666666666
Q ss_pred CCCcEEeCCCCcCcccCCcc-ccCCCCCCCEEEccCCcccccCccc-ccCCCCCCeeeCccccccccccccccCC--CCC
Q 041374 179 SSLELIYPLENRLEGSLPVN-IGFSLPNLEDLSVRQNNYTGSLPHS-LSNASNLQLLDLSLNHFSGQVKIDFNRL--PNL 254 (513)
Q Consensus 179 ~~L~~L~l~~n~l~~~lp~~-~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~l--~~L 254 (513)
++|++|++++|.+.+.+|.. .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+ .+|
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 66666666666665433322 1225667777777777776555554 5667777777777777766666666554 567
Q ss_pred cEEEcCCCCCCCCCCCCch--hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCC
Q 041374 255 FRLNFGKNNLGTGAIGDLD--FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVN 332 (513)
Q Consensus 255 ~~L~L~~n~~~~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 332 (513)
+.|++++|.+.......+. ....+..+++|+.|++++|.+.+..|..+.... ..++
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~----------------------~~~~ 240 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI----------------------AGTK 240 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT----------------------TTCC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc----------------------cccc
Confidence 7777777766654332211 122334556777777777777766665554431 1234
Q ss_pred CCEEeccCCcCccCCCccccCCCCeEEeccCCcccc--CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcc
Q 041374 333 LNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG--NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG 410 (513)
Q Consensus 333 L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~ 410 (513)
|+.+++++|...+..... ..+ .+..+..+. ..++|+.|++++|.+.+..|..+.. .+.|++|++++|++++
T Consensus 241 L~~L~l~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGH-TNF-----KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINK 313 (455)
T ss_dssp EEEEECTTCTTTSCCTTC-CSS-----CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCE
T ss_pred eeeEeeccccccccccch-hhh-----ccCcccccccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCcccc
Confidence 445555544433221100 000 000001111 2357777888887777555554433 3444788888888777
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhc
Q 041374 411 SIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490 (513)
Q Consensus 411 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 490 (513)
..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 66777777888888888888887666777777888888888888887777777777888888888888887666666777
Q ss_pred ccCc-eEEccCCcccccCCC
Q 041374 491 LSFN-KMNETINDFCHHKPK 509 (513)
Q Consensus 491 l~~l-~l~l~~n~l~~~~p~ 509 (513)
++.| ++++++|++++.+|.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 7788 888888888887773
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=364.09 Aligned_cols=412 Identities=24% Similarity=0.214 Sum_probs=293.4
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCc-cccCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVP-ESLGQLR 155 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~ 155 (513)
+++.|+|++|.+.+..|..+.++++|++|++++|.+++.+|. ...++++++|++|++++|.+.+..+ ..|++++
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-----DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST-----TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc-----CccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 455555555555554455555555555555555555432221 0125566666666666666655433 3456666
Q ss_pred CCCEEEcccccCCccCcccccCC--CCCcEEeCCCCcCcccCCccccCCCC------CCCEEEccCCcccccCcccccC-
Q 041374 156 SLSFLDISENAFSGMFHSSIFNI--SSLELIYPLENRLEGSLPVNIGFSLP------NLEDLSVRQNNYTGSLPHSLSN- 226 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~lp~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~~- 226 (513)
+|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+..|..+. .+. .|++|++++|.+++..+..+..
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 66666666666666555555554 5566666666666555554433 222 3788888888766544433321
Q ss_pred -------------------------------------CCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCC
Q 041374 227 -------------------------------------ASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAI 269 (513)
Q Consensus 227 -------------------------------------l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 269 (513)
.++|++|++++|.+.+..+..+..+++|+.|++++|.+.+...
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 2578888888888887778888888999999999888876433
Q ss_pred CCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCc
Q 041374 270 GDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPH 349 (513)
Q Consensus 270 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 349 (513)
..+..+++|+.|++++|.+.+..+..+..++. ++.++++.|.+.+..+..+..+++|++|++++|.+++.. .
T Consensus 308 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~ 379 (844)
T 3j0a_A 308 ------EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-F 379 (844)
T ss_dssp ------TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-S
T ss_pred ------HHhcCCCCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-C
Confidence 45677888999999999998888888888876 999999999888777778888899999999998887422 1
Q ss_pred cccCCCCeEEeccC----C----------------c------cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEc
Q 041374 350 AIGELRNLQLRGNV----P----------------S------SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDL 403 (513)
Q Consensus 350 ~~~~l~~L~l~~~~----~----------------~------~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l 403 (513)
+..++.|.++++- | . .+..+++|+.|++++|++++..+.........|+.|++
T Consensus 380 -~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 380 -IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp -CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred -CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 4455555555431 1 1 13478999999999999985444333344566799999
Q ss_pred cCCcCc-----ccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCC
Q 041374 404 SGNLLT-----GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478 (513)
Q Consensus 404 ~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 478 (513)
++|.++ +..+..+..+++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 999987 33456688899999999999999988888899999999999999999976666665 89999999999
Q ss_pred CCCcccchhhhcccCc-eEEccCCcccccCC
Q 041374 479 NLSGHIPEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 479 ~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
++++.+|..+. .+ .+++++|++....+
T Consensus 537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 537 QLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred cCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 99999997765 56 99999999887544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=343.91 Aligned_cols=408 Identities=18% Similarity=0.208 Sum_probs=288.7
Q ss_pred EEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCC
Q 041374 79 TKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLS 158 (513)
Q Consensus 79 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 158 (513)
+.++++++++.+ +|..+. ++|++|++++|.+++ ..|..|.++++|++|++++|.+++..|..|.++++|+
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE-------LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC-------CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccc-------cChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 468999999985 666555 899999999999983 2235789999999999999999998899999999999
Q ss_pred EEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC--CeeeC
Q 041374 159 FLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL--QLLDL 235 (513)
Q Consensus 159 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L 235 (513)
+|++++|.++. +|.. .+++|++|++++|.+.+ .+|..+. .+++|++|++++|.+++ ..+..+++| ++|++
T Consensus 73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 99999999985 4544 89999999999999985 4677777 89999999999999985 356777888 99999
Q ss_pred ccccc--cccccccccCCC-CCcEEEcCCCCCCCCCCCC-------------------------chhhcccCCCcccccc
Q 041374 236 SLNHF--SGQVKIDFNRLP-NLFRLNFGKNNLGTGAIGD-------------------------LDFIAHLTNCSKLEAF 287 (513)
Q Consensus 236 ~~n~~--~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~-------------------------~~~~~~l~~~~~L~~L 287 (513)
++|.+ .+..|..+..+. +...+++++|.+.+..... ...+..+..+++|+.|
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence 99998 666666666543 1223344444433211100 0011234455555555
Q ss_pred cccccccCCcCchhhhcc--ccccceEEeccccceecCCccc-----cCCCCCCEEeccCCc------------------
Q 041374 288 GLDTNIFGGVLPLSIANL--SSTIILFTMGLNQIYGTIPPEV-----KNLVNLNGFGLEYNQ------------------ 342 (513)
Q Consensus 288 ~l~~n~~~~~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~------------------ 342 (513)
+++++.+.+..+..+... ...++.+++++|.+.+.+|..+ ..+++|+.+++++|.
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 555555544322222110 1147788888888877777766 555555555554444
Q ss_pred --------CccCC-CccccCCCCeEEecc-----CCccccCCCCCCEEecccCcCcc--cChHHHHhhhcccceEEccCC
Q 041374 343 --------LTGPI-PHAIGELRNLQLRGN-----VPSSLGNCQNLMLLSVSNNKLTG--ALPPQILGILTLSILLDLSGN 406 (513)
Q Consensus 343 --------~~~~~-~~~~~~l~~L~l~~~-----~~~~l~~~~~L~~L~ls~n~l~~--~~p~~~~~~~~~l~~L~l~~n 406 (513)
+.+.. +..+.+++.|+++++ .|.++..+++|++|++++|++.+ .+|..+.. .+.|++|++++|
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N 384 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQN 384 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSS
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCC
Confidence 43222 145566777776553 46667778888888888888774 33444433 444588888888
Q ss_pred cCcccCCc-cccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 407 LLTGSIPT-EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 407 ~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
++++.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 460 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence 88764554 366778888888888888777666554 68888888888887 777777788888888888888884 55
Q ss_pred h-hhhcccCc-eEEccCCcccccCC
Q 041374 486 E-FLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 486 ~-~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
. .+..++.| ++++++|++++..+
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhccCCcccEEECcCCCCcccCC
Confidence 5 47888888 88888888877543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=315.91 Aligned_cols=293 Identities=29% Similarity=0.492 Sum_probs=251.1
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCc--ccceeeCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCCCE
Q 041374 31 HSNETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQ--WTGVTCGHRH--RRVTKLVLRNQSIGG--FLSPYVGNLSFLRF 104 (513)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~~v~c~~~~--~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~ 104 (513)
.|.+.|+.+|++||+++.+|. .+.+|..+.+||. |.||.|+... ++|+.|+++++.+.+ .++..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 478899999999999998886 7899988888998 9999998654 799999999999999 89999999999999
Q ss_pred EeCCC-CCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcE
Q 041374 105 VNLAS-NNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLEL 183 (513)
Q Consensus 105 L~L~~-n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 183 (513)
|++++ |.+.+ .+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++..|..+..+++|++
T Consensus 81 L~L~~~n~l~~-------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 81 LYIGGINNLVG-------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp EEEEEETTEES-------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred eeCCCCCcccc-------cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 99995 88884 45678899999999999999999889999999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCCccccCCCC-CCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCC
Q 041374 184 IYPLENRLEGSLPVNIGFSLP-NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262 (513)
Q Consensus 184 L~l~~n~l~~~lp~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 262 (513)
|++++|.+.+.+|..+. .++ +|++|++++|++++.+|..+..++ |++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 154 L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred EECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 99999999989999888 676 999999999999999999999887 999999999999889999999999999999999
Q ss_pred CCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCc
Q 041374 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQ 342 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 342 (513)
.+++.. ..+..+++|+.|++++|.+.+..|.++..++. ++.+++++|++++.+|.. ..+++|+.+++++|+
T Consensus 232 ~l~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 232 SLAFDL-------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCBG-------GGCCCCTTCCEEECCSSCCEECCCGGGGGCTT-CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ceeeec-------CcccccCCCCEEECcCCcccCcCChHHhcCcC-CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 887532 23556677777777777777666666666654 666666666666666654 555666666666665
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=336.15 Aligned_cols=415 Identities=19% Similarity=0.228 Sum_probs=279.5
Q ss_pred CCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc
Q 041374 63 LCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR 142 (513)
Q Consensus 63 ~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~ 142 (513)
.|.|.++ |+ .+++++.. +|..+. ++|++|++++|.+++. .|..|.++++|++|++++|.
T Consensus 3 ~C~~~~~-c~----------~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~ 61 (549)
T 2z81_A 3 SCDASGV-CD----------GRSRSFTS-IPSGLT--AAMKSLDLSFNKITYI-------GHGDLRACANLQVLILKSSR 61 (549)
T ss_dssp EECTTSE-EE----------CTTSCCSS-CCSCCC--TTCCEEECCSSCCCEE-------CSSTTSSCTTCCEEECTTSC
T ss_pred cCCCCce-EE----------CCCCcccc-ccccCC--CCccEEECcCCccCcc-------ChhhhhcCCcccEEECCCCC
Confidence 4888887 74 34455553 444443 7999999999999843 24578999999999999999
Q ss_pred ccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCc
Q 041374 143 LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLP 221 (513)
Q Consensus 143 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (513)
+.+..|..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+. .+++|++|++++|.+.+.+|
T Consensus 62 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEEC
T ss_pred cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccC
Confidence 999888999999999999999999999988889999999999999999985 3455555 89999999999998544555
Q ss_pred -ccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC--
Q 041374 222 -HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL-- 298 (513)
Q Consensus 222 -~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-- 298 (513)
..+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+.... ...+..+++|+.|++++|.+.+..
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL------EIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH------HHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc------hhhHhhcccccEEEccCCcccccccc
Confidence 57999999999999999999999999999999999999999875421 112346789999999999998753
Q ss_pred chhhhccccccceEEeccccceecCC----ccccCCCCCCEEeccCCcCccCC---------Cccc--------------
Q 041374 299 PLSIANLSSTIILFTMGLNQIYGTIP----PEVKNLVNLNGFGLEYNQLTGPI---------PHAI-------------- 351 (513)
Q Consensus 299 ~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~---------~~~~-------------- 351 (513)
+..+......++.++++.+.+.+..+ ..+..+++|+.+++++|.+.+.. ...+
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 294 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS
T ss_pred ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence 22333333448888888877664322 22233444555555544433210 0111
Q ss_pred ---------------cCCCCeEEecc----CCccc-cCCCCCCEEecccCcCcccChHHH--HhhhcccceEEccCCcCc
Q 041374 352 ---------------GELRNLQLRGN----VPSSL-GNCQNLMLLSVSNNKLTGALPPQI--LGILTLSILLDLSGNLLT 409 (513)
Q Consensus 352 ---------------~~l~~L~l~~~----~~~~l-~~~~~L~~L~ls~n~l~~~~p~~~--~~~~~~l~~L~l~~n~l~ 409 (513)
.+++.|+++++ +|..+ ..+++|++|++++|++.+.+|... ....+.|++|++++|+++
T Consensus 295 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp CGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred hhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 22333333332 22222 234555555555555544333221 112223355555555544
Q ss_pred ccCC--ccccCCCCCCEEeCCCCccCccCCccccCCCCC---------------------CEEeCCCCcccccccccccC
Q 041374 410 GSIP--TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL---------------------EYLYMEGNSVTGSIPLALNT 466 (513)
Q Consensus 410 ~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L---------------------~~L~L~~n~l~~~~~~~~~~ 466 (513)
+..+ ..+..+++|++|++++|++. .+|..+..+++| ++|++++|++++. +..
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~ 449 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF----SLF 449 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC----CCC
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh----ccc
Confidence 2211 22444455555555555544 344444444444 4444444444432 236
Q ss_pred CCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 467 LKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 467 l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
+++|++|++++|+++ .+|+ ...++.| ++++++|++++.+|..++
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 789999999999998 6776 4678888 999999999988876543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=331.87 Aligned_cols=414 Identities=21% Similarity=0.216 Sum_probs=269.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
..++.|||++|.+.+..+..|.++++|++|+|++|+|++- .+.+|.++++|++|+|++|++++..+..|.+++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-------ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 4789999999999998888999999999999999999832 134789999999999999999987778899999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC----
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL---- 230 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---- 230 (513)
+|++|++++|.+++..+..|.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..+..+.++
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhh
Confidence 99999999999998888889999999999999999974 3455555 78999999999999997777766554443
Q ss_pred CeeeCccccccccccccccCCCCCcEEEcCCCCCC-------------------------------CCCCCCch------
Q 041374 231 QLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLG-------------------------------TGAIGDLD------ 273 (513)
Q Consensus 231 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-------------------------------~~~~~~~~------ 273 (513)
..++++.|.+....+..+ ....++.+++.+|... ......+.
T Consensus 204 ~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 356777777664333222 1222333333332111 00000000
Q ss_pred -------------------------------------hhcccCCCcccccccccccccCCcCchhhhccccccceEEecc
Q 041374 274 -------------------------------------FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 274 -------------------------------------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
....+.....++.|++.++.+.+..+..+. .++.+.+..
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~L~~l~l~~ 358 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK----SLKRLTFTS 358 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCT----TCCEEEEES
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccch----hhhhccccc
Confidence 001112223444555555544433222111 123333333
Q ss_pred ccceecCCccccCCCCCCEEeccCCcCccC--CC-----------------------c---cccCCCCeEEecc------
Q 041374 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGP--IP-----------------------H---AIGELRNLQLRGN------ 362 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~-----------------------~---~~~~l~~L~l~~~------ 362 (513)
+..... .....+++|+.++++.|.+... .+ . .+..++.+++.+.
T Consensus 359 n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 359 NKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp CCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 322211 1122345555555555544321 11 1 1122333333221
Q ss_pred CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcC-cccCCccccCCCCCCEEeCCCCccCccCCcccc
Q 041374 363 VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLL-TGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441 (513)
Q Consensus 363 ~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 441 (513)
.+..+..+++++.++++.|.+.+..+. .+.....++.|++++|++ .+..|..+..+++|++|++++|++.+..|..|.
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccc-ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 123345667777777777777644443 334444557778877764 334566777777888888888888777777777
Q ss_pred CCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcc-cCc-eEEccCCcccc
Q 041374 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENL-SFN-KMNETINDFCH 505 (513)
Q Consensus 442 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~l-~l~l~~n~l~~ 505 (513)
++++|++|+|++|++++..|..|..+++|+.||+++|++++..|+.+..+ ++| ++++++|+++.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 78888888888888877777777777888888888888877777777776 467 78888887753
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=327.26 Aligned_cols=407 Identities=18% Similarity=0.190 Sum_probs=290.3
Q ss_pred EEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCC
Q 041374 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157 (513)
Q Consensus 78 v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 157 (513)
.+.++++++++.+ +|..+. ++|++|++++|.+++. .+..|.++++|++|++++|.+++..|..|.++++|
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISEL-------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCC-------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcccc-------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 3789999999987 555443 8999999999999832 23588999999999999999999889999999999
Q ss_pred CEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCC--Ceee
Q 041374 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNL--QLLD 234 (513)
Q Consensus 158 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~ 234 (513)
++|++++|.++.. |.. .+++|++|++++|.+.+ .+|..+. .+++|++|++++|++++. .+..+++| ++|+
T Consensus 103 ~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 103 EYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCIL 175 (562)
T ss_dssp CEEECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEE
T ss_pred CEEECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEE
Confidence 9999999999854 444 89999999999999984 3345666 899999999999999853 34555555 9999
Q ss_pred Cccccc--cccccccccCCC--------------------------CCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 235 LSLNHF--SGQVKIDFNRLP--------------------------NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 235 L~~n~~--~~~~~~~~~~l~--------------------------~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
+++|.+ .+..+..+..+. +|+.+++++|....... ...+..+...+.++.
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l--~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL--MTFLSELTRGPTLLN 253 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH--HHHHHHHHSCSSCEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH--HHHHHHHhccCcceE
Confidence 999998 666666665543 34444444432100000 001112223333333
Q ss_pred ccccccccCCcCchhhhc--cccccceEEeccccceecCCccc-----cCC--------------------------CCC
Q 041374 287 FGLDTNIFGGVLPLSIAN--LSSTIILFTMGLNQIYGTIPPEV-----KNL--------------------------VNL 333 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~-----~~~--------------------------~~L 333 (513)
+++.++.+.+.....+.. ....++.+++++|.+.+.+|..+ ..+ .+|
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 333333332211111000 00136666666666666665544 221 357
Q ss_pred CEEeccCCcCccCCC-ccccCCCCeEEecc-----CCccccCCCCCCEEecccCcCcc--cChHHHHhhhcccceEEccC
Q 041374 334 NGFGLEYNQLTGPIP-HAIGELRNLQLRGN-----VPSSLGNCQNLMLLSVSNNKLTG--ALPPQILGILTLSILLDLSG 405 (513)
Q Consensus 334 ~~L~l~~n~~~~~~~-~~~~~l~~L~l~~~-----~~~~l~~~~~L~~L~ls~n~l~~--~~p~~~~~~~~~l~~L~l~~ 405 (513)
++|++++|.+..... ..+.+++.|+++++ .|..+..+++|++|++++|++.+ .+|..+ ...+.|++|++++
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~L~~L~l~~ 412 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSL 412 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-TTCTTCCEEECTT
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-cCCCCCCEEECCC
Confidence 777777777664332 55677788887664 56777888999999999999874 223333 3445569999999
Q ss_pred CcCcccCCc-cccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCccc
Q 041374 406 NLLTGSIPT-EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484 (513)
Q Consensus 406 n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 484 (513)
|++++.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l 488 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SV 488 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CC
Confidence 999874554 477889999999999999877776654 78999999999998 78877778999999999999998 46
Q ss_pred chh-hhcccCc-eEEccCCcccccCC
Q 041374 485 PEF-LENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 485 p~~-l~~l~~l-~l~l~~n~l~~~~p 508 (513)
|.. +..++.| .+++++|++++..|
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 655 8899999 99999999987654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=323.98 Aligned_cols=387 Identities=20% Similarity=0.226 Sum_probs=290.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|..|+++++|++|++++|.++. +|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-------DISVFKFNQELEYLDLSHNKLVK-ISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-------EGGGGTTCTTCCEEECCSSCCCE-EECC--CCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-------ChHHhhcccCCCEEecCCCceee-cCcc--ccC
Confidence 6899999999999998888999999999999999999833 25688999999999999999986 6665 899
Q ss_pred CCCEEEcccccCCc-cCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC--CEEEccCCcc--cccCcccccC----
Q 041374 156 SLSFLDISENAFSG-MFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL--EDLSVRQNNY--TGSLPHSLSN---- 226 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~---- 226 (513)
+|++|++++|.+++ ..|..+.++++|++|++++|.+.+ ..+. .+++| ++|++++|.+ .+..|..+..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc-ccccceeeEEEeecccccccccccccccccccc
Confidence 99999999999987 478999999999999999999985 2233 56777 9999999998 6666665554
Q ss_pred ----------------------CCCCCeeeCcccc-------ccccccccccCCCCCcEEEcCCCCCCCCCCCCc-----
Q 041374 227 ----------------------ASNLQLLDLSLNH-------FSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDL----- 272 (513)
Q Consensus 227 ----------------------l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----- 272 (513)
+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+.....+
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence 5566777776665 333333 45555555555554443332100000
Q ss_pred ----------------hhhccc-----CCCcccccccccccccCCcCc-hhhhccc--cccceEEeccccceecCCcccc
Q 041374 273 ----------------DFIAHL-----TNCSKLEAFGLDTNIFGGVLP-LSIANLS--STIILFTMGLNQIYGTIPPEVK 328 (513)
Q Consensus 273 ----------------~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~~--~~l~~l~l~~~~~~~~~~~~~~ 328 (513)
..+..+ ..++.|+.+++++|.+ .+| .++..+. ..++.++++.|.+.... ...
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~ 321 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPS 321 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chh
Confidence 011112 4444555555555544 222 3333321 12666666666654322 125
Q ss_pred CCCCCCEEeccCCcCccCCCccc---cCCCCeEEecc-------CCccccCCCCCCEEecccCcCcccChHHHHhhhccc
Q 041374 329 NLVNLNGFGLEYNQLTGPIPHAI---GELRNLQLRGN-------VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLS 398 (513)
Q Consensus 329 ~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~l~~~-------~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 398 (513)
.+++|++|++++|.+++..|..+ .+++.|+++++ +|..+..+++|++|++++|.+.+.+|...+...+.|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 78899999999999998777655 45666677664 234577899999999999999977887766666777
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccc-ccCCCCCCEEECCC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLA-LNTLKSIKELDLSR 477 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~ 477 (513)
++|++++|++++..|..+. ++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence 9999999999887776664 79999999999999 88988889999999999999999 56665 89999999999999
Q ss_pred CCCCcccc
Q 041374 478 NNLSGHIP 485 (513)
Q Consensus 478 n~l~~~~p 485 (513)
|++.+..+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99987654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=315.40 Aligned_cols=376 Identities=24% Similarity=0.271 Sum_probs=266.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCC-------------CCEEEeecCc
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSA-------------LQNIDIAGNR 142 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~-------------L~~L~l~~n~ 142 (513)
.+++.++++++.+ +.+|..++++++|++|++++|.+.|.+| ..++++++ +++|++++|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-------~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-------PGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSC-------TTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-------cccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 5789999999999 7899999999999999999999986655 45555554 5999999999
Q ss_pred ccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcc
Q 041374 143 LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH 222 (513)
Q Consensus 143 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~ 222 (513)
+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+. .+|.. .++|++|++++|++++ +|
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-
Confidence 987 4542 3789999999999987 4543 479999999999998 45532 2689999999999995 77
Q ss_pred cccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhh
Q 041374 223 SLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSI 302 (513)
Q Consensus 223 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 302 (513)
.++++++|++|++++|++.+ +|.. .++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. |..
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l--------~~~~~l~~L~~L~l~~N~l~~l-~~~- 213 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL--------PELQNLPFLTAIYADNNSLKKL-PDL- 213 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECCSSCCSSC-CCC-
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC--------ccccCCCCCCEEECCCCcCCcC-CCC-
Confidence 59999999999999999985 4443 35899999999998762 2478889999999999998863 322
Q ss_pred hccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcccc-CCCCCCEEecccC
Q 041374 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG-NCQNLMLLSVSNN 381 (513)
Q Consensus 303 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~L~~L~ls~n 381 (513)
...++.+++++|.+. .+|. +..+++|++|++++|++++ +|..+.+++.|+++++-...+. ..++|++|++++|
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred ---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCC
Confidence 235999999999988 6674 8899999999999999985 6667788999998876333332 2478999999999
Q ss_pred cCcccChHHHHhhhcccceEEccCCcCcccCCccccCC-CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccc
Q 041374 382 KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL-KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI 460 (513)
Q Consensus 382 ~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 460 (513)
++++ +|. .+..+++|++++|++++ ++ .+ ++|++|++++|.+.+ +|.. +++|++|++++|+++ .+
T Consensus 288 ~l~~-l~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 288 IFSG-LSE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp CCSE-ESC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred ccCc-ccC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 9985 221 12456999999999985 22 23 589999999999985 6654 589999999999998 56
Q ss_pred cccccCCCCCCEEECCCCCCCc--ccchhhhcc-------------cCc-eEEccCCcccc--cCCCCCc
Q 041374 461 PLALNTLKSIKELDLSRNNLSG--HIPEFLENL-------------SFN-KMNETINDFCH--HKPKVFA 512 (513)
Q Consensus 461 ~~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l-------------~~l-~l~l~~n~l~~--~~p~~~~ 512 (513)
|. .+++|++|++++|++++ .+|..+..+ +.| ++|+++|+++| .+|..+.
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 76 47899999999999998 788998888 778 99999999998 8998764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=310.06 Aligned_cols=345 Identities=19% Similarity=0.204 Sum_probs=223.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.+. + .+..+++|++|++++|.++ .+| ++.+++|++|++++|.+++. + ++.++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~--------~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT--------TLD--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS--------CCC--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC--------eEc--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 5678888888887764 3 5778888888888888877 333 67778888888888888773 3 77788
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. + +..+++|++|++++|.+++ ++ +. .+++|++|++++|+..+.+ .+..+++|++|++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 888888888887764 2 7777888888888888774 43 33 6778888888888554444 3667778888888
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|++++ ++ +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+ +| ++.++. ++.++++
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~-L~~L~l~ 241 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ-LTYFDCS 241 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTCTT-CSEEECC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--ccccCC-CCEEEee
Confidence 8887775 33 67777888888888777652 25566677777777776665 22 333333 5555555
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
.|++.+.. ...+++|+.+++++| +|+.|++++|.+.+.+|. ...
T Consensus 242 ~N~l~~~~---~~~l~~L~~L~l~~n------------------------------~L~~L~l~~n~~~~~~~~---~~l 285 (457)
T 3bz5_A 242 VNPLTELD---VSTLSKLTTLHCIQT------------------------------DLLEIDLTHNTQLIYFQA---EGC 285 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTC------------------------------CCSCCCCTTCTTCCEEEC---TTC
T ss_pred CCcCCCcC---HHHCCCCCEEeccCC------------------------------CCCEEECCCCccCCcccc---ccc
Confidence 55554432 223334444444433 333444444443333331 112
Q ss_pred cccceEEccCCcCcccCCc--------cccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCC
Q 041374 396 TLSILLDLSGNLLTGSIPT--------EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 467 (513)
+.|+.|++++|...+.+|. .+..+++|++|++++|.+++ ++ ++.+++|+.|++++|++++ +
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------C
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------c
Confidence 2234444444433322221 13445778888888888876 33 7778888888888888874 2
Q ss_pred CCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCCc
Q 041374 468 KSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~~ 512 (513)
+.|..|++++|.+.|. ..+..+ .+++++|+++|.||..+.
T Consensus 355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 4555667777777765 345566 889999999999998653
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=304.55 Aligned_cols=344 Identities=26% Similarity=0.341 Sum_probs=240.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.. ++ .+..+++|++|++++|.++ .++. +.++++|++|++++|.+.+..+ +..++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~--------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT--------DITP-LKNLTKLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC--------CCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC--------Cchh-hhccccCCEEECCCCccccChh--hcCCC
Confidence 468888888887765 33 4778888899999888877 4444 7888888899988888887544 88888
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++..+ +.++++|++|++++|.+. .++. +. .+++|++|+++ +.+.+. + .+.++++|++|++
T Consensus 113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l 184 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA-LS-GLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDI 184 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG-GT-TCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh-hc-cCCcccEeecC-CcccCc-h-hhccCCCCCEEEC
Confidence 88899988888876643 788888888888888887 3443 33 68888888886 444422 2 3778888888888
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+.+. ..+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+. ..+..++. ++.++++
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~l~ 251 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDIT--------PLGILTNLDELSLNGNQLKDI--GTLASLTN-LTDLDLA 251 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCC--GGGGGCTT-CSEEECC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCcccccc--------cccccCCCCEEECCCCCcccc--hhhhcCCC-CCEEECC
Confidence 88887643 34778888888888888776532 255677788888888877653 23445544 7777777
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+. +. +...
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~------------------~~~l~~L~~L~L~~n~l~~~-~~--~~~l 308 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP------------------LAGLTALTNLELNENQLEDI-SP--ISNL 308 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG------------------GTTCTTCSEEECCSSCCSCC-GG--GGGC
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcccc------------------ccCCCccCeEEcCCCcccCc-hh--hcCC
Confidence 777665443 5666777777777776663211 34456777777777777643 32 2334
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
+.|+.|++++|++++..| +..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..| +..+++|+.|++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 445777777777765444 55677777777777777643 456677777777777777776655 666777777777
Q ss_pred CCCCCCc
Q 041374 476 SRNNLSG 482 (513)
Q Consensus 476 ~~n~l~~ 482 (513)
++|++++
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 7777764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=306.40 Aligned_cols=346 Identities=16% Similarity=0.136 Sum_probs=273.2
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC-cccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF-HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 209 (513)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+. .+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc-CcccCCEE
Confidence 68999999999999988999999999999999999987444 67788999999999999999866666666 88999999
Q ss_pred EccCCcccccCccc--ccCCCCCCeeeCcccccccccccc-ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 210 SVRQNNYTGSLPHS--LSNASNLQLLDLSLNHFSGQVKID-FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 210 ~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+.....+.. + ...+++.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l-~~~~L~~ 184 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN---F-QGKHFTL 184 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG---G-TTCEEEE
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc---c-ccccccc
Confidence 99999998755554 888999999999999998776765 788999999999999887754432211 1 1146677
Q ss_pred ccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcc
Q 041374 287 FGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSS 366 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~ 366 (513)
+++++|.+.+..+.+++.. ....+..+++|++|++++|.+.+..+..+...
T Consensus 185 L~l~~n~l~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------------ 235 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWE-----------------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDA------------ 235 (455)
T ss_dssp EECTTCBCTTCSTTCTTHH-----------------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH------------
T ss_pred cccccCcccccchhhcccc-----------------ccccccccceeeeEecCCCcccccchhhhhcc------------
Confidence 7777776665443332110 01123456789999999999987666544221
Q ss_pred ccCCCCCCEEecccCcCcccC----------hHHHHh-hhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCcc
Q 041374 367 LGNCQNLMLLSVSNNKLTGAL----------PPQILG-ILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~----------p~~~~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 435 (513)
...++|+.|++++|...+.. +..+.. ....+++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 236 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 236 -IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp -TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred -ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 11256777777777543221 111111 124569999999999988999999999999999999999988
Q ss_pred CCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccCCCCC
Q 041374 436 IPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 436 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
.|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..++.| ++++++|++++..|..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 89999999999999999999998889999999999999999999998889999999999 99999999997555443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=315.33 Aligned_cols=388 Identities=21% Similarity=0.226 Sum_probs=282.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++. .|+.|.++++|++|++++|.++. +|.. .++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-------DFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMA 121 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-------CTTTTTTCTTCCEEECTTSCCCE-ECSC--CCT
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-------CHHHhCCCCCCCEEECCCCcCCc-cCcc--ccc
Confidence 6899999999999998888999999999999999999843 25578999999999999999986 6655 899
Q ss_pred CCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC--CEEEccCCcc--cccCcccccC----
Q 041374 156 SLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL--EDLSVRQNNY--TGSLPHSLSN---- 226 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~---- 226 (513)
+|++|++++|.+++. .|..+.++++|++|++++|.+.+. .+. .+++| ++|++++|.+ ++..|..+..
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~-~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL-PVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG-GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh-hhhhceeeEEEeecccccccccCcccccccCcc
Confidence 999999999999875 468999999999999999999842 222 44555 9999999998 6666665554
Q ss_pred ----------------------CCCCCeeeCcccccc----ccccccccCCC---------------------------C
Q 041374 227 ----------------------ASNLQLLDLSLNHFS----GQVKIDFNRLP---------------------------N 253 (513)
Q Consensus 227 ----------------------l~~L~~L~L~~n~~~----~~~~~~~~~l~---------------------------~ 253 (513)
+++|+.+++++|... ......+..++ +
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 345666666665310 00111233333 4
Q ss_pred CcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCc-hhhhcc--ccccceEEeccccceecCCccccCC
Q 041374 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLP-LSIANL--SSTIILFTMGLNQIYGTIPPEVKNL 330 (513)
Q Consensus 254 L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~~ 330 (513)
|++|++++|.+.+..+..+. ......++.|+.+++..+.+ .+| .++... ...++.++++.|.+..... ...+
T Consensus 278 L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l 352 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP 352 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC
T ss_pred ccEEEEeccEeeccccchhh-hcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCC
Confidence 55555555555432221110 00013334444444444443 222 222222 1227778888777643221 1567
Q ss_pred CCCCEEeccCCcCccCCCccc---cCCCCeEEeccC-------CccccCCCCCCEEecccCcCcccChHHHHhhhcccce
Q 041374 331 VNLNGFGLEYNQLTGPIPHAI---GELRNLQLRGNV-------PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSIL 400 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~---~~l~~L~l~~~~-------~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~ 400 (513)
++|++|++++|.+++..|..+ .+++.|+++++- |..+..+++|++|++++|++.+.+|...+.....|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 788888888888887666554 445566666542 2346788999999999999997788876666777899
Q ss_pred EEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccccccc-ccCCCCCCEEECCCCC
Q 041374 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLA-LNTLKSIKELDLSRNN 479 (513)
Q Consensus 401 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~ 479 (513)
|++++|++++..|..+. ++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 99999999877766554 79999999999998 78888889999999999999999 56665 8999999999999999
Q ss_pred CCcccch
Q 041374 480 LSGHIPE 486 (513)
Q Consensus 480 l~~~~p~ 486 (513)
+.+..|.
T Consensus 509 ~~c~c~~ 515 (562)
T 3a79_B 509 WDCTCPG 515 (562)
T ss_dssp BCCCHHH
T ss_pred cCCCcch
Confidence 9876553
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=299.40 Aligned_cols=345 Identities=24% Similarity=0.354 Sum_probs=237.8
Q ss_pred CCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
.+++++.|++.++.+. .+| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.+
T Consensus 44 ~l~~l~~L~l~~~~i~--------~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK--------SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HHHTCCEEECCSSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HhccccEEecCCCCCc--------cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcC
Confidence 4567777888777765 344 36667788888888877776433 7777888888888887776654 777
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 257 (513)
+++|++|++++|.+. .++. +. .+++|++|++++|.+.+ ++ .+..+++|++|++. |.+.+. ..+..+++|++|
T Consensus 111 l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L 182 (466)
T 1o6v_A 111 LTNLTGLTLFNNQIT-DIDP-LK-NLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERL 182 (466)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GT-TCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEE
T ss_pred CCCCCEEECCCCCCC-CChH-Hc-CCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEE
Confidence 788888888887777 3443 33 67778888888877773 33 37777778888775 334322 237777788888
Q ss_pred EcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEe
Q 041374 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFG 337 (513)
Q Consensus 258 ~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 337 (513)
++++|.+... ..+..+++|+.|++++|.+.+..+ ++.++. ++.++++.|.+.+. ..+..+++|++|+
T Consensus 183 ~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 183 DISSNKVSDI--------SVLAKLTNLESLIATNNQISDITP--LGILTN-LDELSLNGNQLKDI--GTLASLTNLTDLD 249 (466)
T ss_dssp ECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ECcCCcCCCC--------hhhccCCCCCEEEecCCccccccc--ccccCC-CCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence 8877776542 235667777888888777776655 444444 77788877777653 3466777788888
Q ss_pred ccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcccc
Q 041374 338 LEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVG 417 (513)
Q Consensus 338 l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~ 417 (513)
+++|.+.+..+ +..+++|++|++++|.+.+ ++. +...+.|++|++++|++++..+ +.
T Consensus 250 l~~n~l~~~~~------------------~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 250 LANNQISNLAP------------------LSGLTKLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp CCSSCCCCCGG------------------GTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred CCCCccccchh------------------hhcCCCCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 88877764321 3445777788888887764 333 3334455778888887775433 66
Q ss_pred CCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eE
Q 041374 418 NLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KM 496 (513)
Q Consensus 418 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l 496 (513)
.+++|+.|++++|.+.+..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..++.| .+
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 77778888888887775544 56777888888888877754 356777788888888888776666 6777777 78
Q ss_pred EccCCcccc
Q 041374 497 NETINDFCH 505 (513)
Q Consensus 497 ~l~~n~l~~ 505 (513)
++++|++++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 888887776
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=293.97 Aligned_cols=350 Identities=22% Similarity=0.244 Sum_probs=252.9
Q ss_pred CCCCCCCCCCC-cccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcc-cCCCC
Q 041374 54 TKSWNNSISLC-QWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPS-IGNLS 131 (513)
Q Consensus 54 ~~~w~~~~~~c-~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~-~~~l~ 131 (513)
+++|..+.+|| .|.+..|.. +.+.+............-..++++++|+++++.++ .+|.. +.+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~-----~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--------~l~~~~~~~l~ 69 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVF-----YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--------KLPAALLDSFR 69 (390)
T ss_dssp ----CCEECBCC------EEE-----ESCEECSSCCCCEESCSSGGGCCCSEEEEESCEES--------EECTHHHHHCC
T ss_pred cCCCCCccceehhhhhhccce-----eeeeeecccccccccccccccCCceEEEecCCchh--------hCChhHhcccc
Confidence 45676665555 455555531 11122222211112222345788999999999877 45554 67889
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+. .+|..++..+++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 9999999999998877778999999999999999999888888899999999999999988 778776557889999999
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 291 (513)
++|.+++..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.. +...++|+.|++++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----------~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----------LAIPIAVEELDASH 214 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----------EECCSSCSEEECCS
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----------cCCCCcceEEECCC
Confidence 99998877777788889999999999888753 35667888888888877654 12223455555555
Q ss_pred cccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC
Q 041374 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ 371 (513)
Q Consensus 292 n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~ 371 (513)
|.+. .. |. ...++|++|++++|.+++. .++..++
T Consensus 215 n~l~-------------------------~~-~~--~~~~~L~~L~l~~n~l~~~------------------~~l~~l~ 248 (390)
T 3o6n_A 215 NSIN-------------------------VV-RG--PVNVELTILKLQHNNLTDT------------------AWLLNYP 248 (390)
T ss_dssp SCCC-------------------------EE-EC--CCCSSCCEEECCSSCCCCC------------------GGGGGCT
T ss_pred Ceee-------------------------ec-cc--cccccccEEECCCCCCccc------------------HHHcCCC
Confidence 5443 22 11 1236788999999988742 2345678
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
+|++|++++|.+.+..|..+.. .+.|++|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 8999999999988665655544 4455999999999884 5666677889999999999888 67777888899999999
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
++|++++. + +..+++|+.|++++|++.+.
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 99998743 3 67788999999999998754
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=300.53 Aligned_cols=303 Identities=21% Similarity=0.234 Sum_probs=201.8
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence 4444444444444444444444455555555555444444444444444444444444444 444443335566666666
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 291 (513)
++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.... ...+..+++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L------- 178 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP------TEALSHLHGL------- 178 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC------HHHHTTCTTC-------
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC------hhHhcccCCC-------
Confidence 666665555555666666666666666666555555666666666666655554321 1122333333
Q ss_pred cccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC
Q 041374 292 NIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ 371 (513)
Q Consensus 292 n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~ 371 (513)
+.++++.|.+.+..+..+..+++|++|++++|...+.++.. .....
T Consensus 179 ------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------------~~~~~ 224 (477)
T 2id5_A 179 ------------------IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN----------------CLYGL 224 (477)
T ss_dssp ------------------CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT----------------TTTTC
T ss_pred ------------------cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc----------------cccCc
Confidence 33334444444444556778889999999999877655432 22335
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
+|++|++++|.++ .+|...+.....|++|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|+|
T Consensus 225 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 225 NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred cccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 8999999999998 677666666677799999999999877788899999999999999999888999999999999999
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
++|++++..+..|..+++|+.|++++|++...
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999977777888999999999999998754
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=294.73 Aligned_cols=372 Identities=24% Similarity=0.267 Sum_probs=214.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCC-------------CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFL-------------RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR 142 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~ 142 (513)
.+++.|+++++.+.|.+|..++++++| ++|++++|+++ .+|.. .++|++|++++|.
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~--------~lp~~---~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS--------SLPEL---PPHLESLVASCNS 102 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS--------CCCSC---CTTCSEEECCSSC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc--------cCCCC---cCCCCEEEccCCc
Confidence 345666666666666667666666653 77777777666 22321 2467777777777
Q ss_pred ccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcc
Q 041374 143 LHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPH 222 (513)
Q Consensus 143 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~ 222 (513)
+++ +|.. .++|++|++++|.+++... . .++|++|++++|.+. .+| .+. .+++|++|++++|++++ +|.
T Consensus 103 l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~~-lp~ 170 (454)
T 1jl5_A 103 LTE-LPEL---PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLKK-LPD 170 (454)
T ss_dssp CSS-CCCC---CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCSC-CCC
T ss_pred CCc-cccc---cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCcc-cCC
Confidence 666 4432 3567777777776664311 1 156777777777776 366 333 66677777777777663 444
Q ss_pred cccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhh
Q 041374 223 SLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSI 302 (513)
Q Consensus 223 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 302 (513)
.+ ++|++|++++|.+.+ +| .++.+++|++|++++|.+.+... ..++|+.|++++|.+. .+|. +
T Consensus 171 ~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~n~l~-~lp~-~ 233 (454)
T 1jl5_A 171 LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD----------LPLSLESIVAGNNILE-ELPE-L 233 (454)
T ss_dssp CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC----------CCTTCCEEECCSSCCS-SCCC-C
T ss_pred Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC----------CcCcccEEECcCCcCC-cccc-c
Confidence 32 467777777777664 34 46667777777777776654221 1136677777777666 3442 5
Q ss_pred hccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccC-CCCCCEEecccC
Q 041374 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGN-CQNLMLLSVSNN 381 (513)
Q Consensus 303 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~~L~~L~ls~n 381 (513)
+.++. ++.+++++|++.+ +|.. .++|++|++++|.+.+ +|..+.+++.|+++++-...+.. .++|+.|++++|
T Consensus 234 ~~l~~-L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 234 QNLPF-LTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp TTCTT-CCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred CCCCC-CCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC
Confidence 55554 6777777776664 3332 3567777777777664 55555667777766653333322 368999999999
Q ss_pred cCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccc--c
Q 041374 382 KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG--S 459 (513)
Q Consensus 382 ~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 459 (513)
++.+ ++ ..+..+++|++++|++++ +|.. +++|++|++++|.+. .+|. .+++|++|++++|++++ .
T Consensus 308 ~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 308 EIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp CCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred cCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCC
Confidence 8874 33 223456899999999885 5543 588999999999988 5666 47899999999999987 7
Q ss_pred ccccccCC-------------CCCCEEECCCCCCCc--ccchhhhcccCceEEccCCcccccCCCCC
Q 041374 460 IPLALNTL-------------KSIKELDLSRNNLSG--HIPEFLENLSFNKMNETINDFCHHKPKVF 511 (513)
Q Consensus 460 ~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~~l~~l~l~l~~n~l~~~~p~~~ 511 (513)
+|..+..+ ++|+.|++++|++++ .+|..++ .+.+.+|.+.+.+|...
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~-----~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE-----DLRMNSERVVDPYEFAH 436 (454)
T ss_dssp CCTTCCEEECCC-------------------------------------------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh-----heeCcCcccCCccccCH
Confidence 88888777 889999999999987 6776654 66778888888877543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=302.60 Aligned_cols=394 Identities=19% Similarity=0.192 Sum_probs=289.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEeecCcccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIAGNRLHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 154 (513)
.+++.|+|++|++.+..+..|.++++|++|+|++|+++ .+| ..|.++++|++|++++|.+++..+..|+++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~--------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC--------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 58999999999999988889999999999999999998 444 468999999999999999999777789999
Q ss_pred CCCCEEEcccccCCcc-CcccccCCCCCcEEeCCCCcCcccCCccccCCCCC----CCEEEccCCcccccCcccc-----
Q 041374 155 RSLSFLDISENAFSGM-FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN----LEDLSVRQNNYTGSLPHSL----- 224 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~----L~~L~l~~n~l~~~~~~~l----- 224 (513)
++|++|++++|.++.. .|..+..+++|++|++++|++.+..+..+. .+.+ ...++++.|.+....+..+
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc-chhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 9999999999999764 578889999999999999999854443332 2221 2344555554432111111
Q ss_pred -------------------cC---------------------------------------------------------CC
Q 041374 225 -------------------SN---------------------------------------------------------AS 228 (513)
Q Consensus 225 -------------------~~---------------------------------------------------------l~ 228 (513)
.. ..
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 11 11
Q ss_pred CCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchh-------------hcccCCCcccccccccccccC
Q 041374 229 NLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDF-------------IAHLTNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 229 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-------------~~~l~~~~~L~~L~l~~n~~~ 295 (513)
+++.+++.++.+.. ...+.....++.|++.+|.+.......+.. +.....+++|+.++++.|.+.
T Consensus 307 ~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 307 NVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp TCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred cccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccc
Confidence 12222222222211 112334456777777776654433221111 112335678888888888775
Q ss_pred C--cCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCC-ccc---cCCCCeEEec-----cCC
Q 041374 296 G--VLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAI---GELRNLQLRG-----NVP 364 (513)
Q Consensus 296 ~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~---~~l~~L~l~~-----~~~ 364 (513)
. ..+........ ++.+++..+..... +..+..+++|+.+++..++.....+ ..+ ..++.++++. ..+
T Consensus 385 ~~~~~~~~~~~~~~-L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~ 462 (635)
T 4g8a_A 385 FKGCCSQSDFGTIS-LKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462 (635)
T ss_dssp EEEECCHHHHSCSC-CCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cccccccchhhhhh-hhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccc
Confidence 3 34455555555 88888888877654 4557789999999999988765444 233 3444455443 356
Q ss_pred ccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCC
Q 041374 365 SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACT 444 (513)
Q Consensus 365 ~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 444 (513)
..+..++.++.|++++|.+.+.+++..+...+.|++|++++|++++..|..+.++++|++|++++|++.+..|..|..++
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 66778899999999999865554444455556679999999999988899999999999999999999988888999999
Q ss_pred CCCEEeCCCCcccccccccccCC-CCCCEEECCCCCCCc
Q 041374 445 TLEYLYMEGNSVTGSIPLALNTL-KSIKELDLSRNNLSG 482 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~ 482 (513)
+|++|+|++|++++..|..+..+ ++|+.|++++|++..
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999999999999999988 689999999999864
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=300.15 Aligned_cols=312 Identities=24% Similarity=0.284 Sum_probs=243.8
Q ss_pred CCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 98 NLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.+.+++.+++++|.+. .+|. .+.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|.
T Consensus 49 ~l~~l~~l~l~~~~l~--------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR--------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEES--------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCCC--------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 4678899999998876 4444 467889999999999999987778899999999999999999988888888
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcE
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 256 (513)
++++|++|++++|.+. .+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+++|+.
T Consensus 121 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~ 196 (597)
T 3oja_B 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFH 196 (597)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSE
T ss_pred CCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhh
Confidence 9999999999999888 67777655788999999999998877777888889999999999888754 3566778888
Q ss_pred EEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEE
Q 041374 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336 (513)
Q Consensus 257 L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L 336 (513)
|++++|.+.+ +...++|+.|++++|.+. ...+. ..++|+.|
T Consensus 197 L~l~~n~l~~-----------l~~~~~L~~L~ls~n~l~-------------------------~~~~~---~~~~L~~L 237 (597)
T 3oja_B 197 ANVSYNLLST-----------LAIPIAVEELDASHNSIN-------------------------VVRGP---VNVELTIL 237 (597)
T ss_dssp EECCSSCCSE-----------EECCTTCSEEECCSSCCC-------------------------EEECS---CCSCCCEE
T ss_pred hhcccCcccc-----------ccCCchhheeeccCCccc-------------------------ccccc---cCCCCCEE
Confidence 8888877654 222344555555555443 21111 12578899
Q ss_pred eccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccc
Q 041374 337 GLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV 416 (513)
Q Consensus 337 ~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~ 416 (513)
++++|.+++. .++..+++|+.|++++|.+.+..|..+... +.|+.|++++|.+++ +|..+
T Consensus 238 ~L~~n~l~~~------------------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~ 297 (597)
T 3oja_B 238 KLQHNNLTDT------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYG 297 (597)
T ss_dssp ECCSSCCCCC------------------GGGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECTTSCCCE-EECSS
T ss_pred ECCCCCCCCC------------------hhhccCCCCCEEECCCCccCCCCHHHhcCc-cCCCEEECCCCCCCC-CCccc
Confidence 9999988852 235567899999999999987666666544 445999999999885 56666
Q ss_pred cCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCccc
Q 041374 417 GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484 (513)
Q Consensus 417 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 484 (513)
..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.+. + +..+++|+.|++++|++.+..
T Consensus 298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 77889999999999988 6788888889999999999998744 3 667888999999999987543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=288.85 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=245.2
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|+|++|.+++.. +..|.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|.+++
T Consensus 32 ~~l~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN-------QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEEC-------TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCcEEECCCCccceEC-------HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 47788888888877322 34677788888888888888877777888888888888888888777667777888
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
+|++|++++|.+.+..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCEEECCCCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 888888888888754454444 7788888888888888777777888888888888888887666666788888888888
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEecc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLE 339 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (513)
++|.+..... ..+..+++|+.|++++|... +.+|.......+|++|+++
T Consensus 184 ~~n~i~~~~~------~~~~~l~~L~~L~l~~~~~~-------------------------~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 184 RHLNINAIRD------YSFKRLYRLKVLEISHWPYL-------------------------DTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp ESCCCCEECT------TCSCSCTTCCEEEEECCTTC-------------------------CEECTTTTTTCCCSEEEEE
T ss_pred CCCcCcEeCh------hhcccCcccceeeCCCCccc-------------------------cccCcccccCccccEEECc
Confidence 8887765332 23455556666666554433 2333334445689999999
Q ss_pred CCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCC
Q 041374 340 YNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419 (513)
Q Consensus 340 ~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l 419 (513)
+|.+++..+. .+..+++|+.|++++|.+.+. +...+.....|++|++++|++++..+..+..+
T Consensus 233 ~n~l~~~~~~----------------~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 233 HCNLTAVPYL----------------AVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp SSCCCSCCHH----------------HHTTCTTCCEEECCSSCCCEE-CTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred CCcccccCHH----------------HhcCccccCeeECCCCcCCcc-ChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 9998842222 345678999999999999844 44444455566999999999998889999999
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhc
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 490 (513)
++|+.|++++|.+++..+..|..+++|++|++++|++........ -......+.+.++.....-|..+.+
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~~~g 365 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPEFVQG 365 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEESGGGTT
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-HHhhhhccccCccCceeCCchHHcC
Confidence 999999999999997666778999999999999999985432211 1123334555666655555665554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=285.86 Aligned_cols=372 Identities=17% Similarity=0.199 Sum_probs=279.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|++++|.+.+. + ++.+++|++|++++|.+++ ++ ++++++|++|++++|.+++ +| ++.++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~--------~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~ 127 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN--------LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNP 127 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC--------CC--CTTCTTCCEEECCSSCCSC-CC--CTTCT
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce--------ee--cCCCCcCCEEECCCCcCCe-ec--CCCCC
Confidence 6899999999999985 3 8899999999999999983 33 7889999999999999988 44 89999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. .+..+++|++|++++|...+.++ +. .+++|++|++++|++++ +| +..+++|+.|++
T Consensus 128 ~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~-~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 128 LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VT-PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNC 198 (457)
T ss_dssp TCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CT-TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEEC
T ss_pred cCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--cc-cCCcCCEEECCCCccce-ec--cccCCCCCEEEC
Confidence 999999999999985 38899999999999997665663 33 78999999999999995 55 888999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhcccc------cc
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS------TI 309 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~------~l 309 (513)
++|.+++. .++.+++|++|++++|++++.+ +..+++|+.|++++|.+.+..+..+..+.. .+
T Consensus 199 ~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 199 DTNNITKL---DLNQNIQLTFLDCSSNKLTEID---------VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---------CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred cCCcCCee---ccccCCCCCEEECcCCcccccC---------ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence 99999864 4889999999999999998721 677899999999999999876655544331 25
Q ss_pred ceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH
Q 041374 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP 389 (513)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~ 389 (513)
+.++++.|.+.+.+| +..+++|+.|++++|...+.+|.....++.|++ ..+++|++|++++|++++ ++
T Consensus 267 ~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l--------~~~~~L~~L~L~~N~l~~-l~- 334 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL--------SQNPKLVYLYLNNTELTE-LD- 334 (457)
T ss_dssp SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC--------TTCTTCCEEECTTCCCSC-CC-
T ss_pred CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEech--------hhcccCCEEECCCCcccc-cc-
Confidence 666677776666665 456788899999998888777766666665543 345788888888888875 33
Q ss_pred HHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccC-CC
Q 041374 390 QILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNT-LK 468 (513)
Q Consensus 390 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~ 468 (513)
+ ...+.|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..+.. ..
T Consensus 335 -l-~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~ 399 (457)
T 3bz5_A 335 -V-SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFG 399 (457)
T ss_dssp -C-TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTS
T ss_pred -c-ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccC
Confidence 3 333445888888888774 24566777788877654 24456778888888888888876533 34
Q ss_pred CCCEEECCCCCCCcccch--hhhccc----Cc--eEEccCCcccccCCCCC
Q 041374 469 SIKELDLSRNNLSGHIPE--FLENLS----FN--KMNETINDFCHHKPKVF 511 (513)
Q Consensus 469 ~L~~L~l~~n~l~~~~p~--~l~~l~----~l--~l~l~~n~l~~~~p~~~ 511 (513)
.+.......+........ .+.+++ .. .+..+.|.++|+|+.-+
T Consensus 400 ~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~ 450 (457)
T 3bz5_A 400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPF 450 (457)
T ss_dssp CCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEB
T ss_pred ceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccc
Confidence 444444443322111111 112222 11 44445788999987654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=266.55 Aligned_cols=305 Identities=24% Similarity=0.349 Sum_probs=167.6
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
..+++|++|+++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++.. ..+.
T Consensus 41 ~~l~~L~~L~l~~~~i~--------~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~ 107 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA--------SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQ 107 (347)
T ss_dssp HHHTTCSEEECCSSCCC--------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred hhcccccEEEEeCCccc--------cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHc
Confidence 35566667777666665 333 356666777777777766653 32 66667777777777766543 2455
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcE
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 256 (513)
++++|++|++++|.+. .++. +. .+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++
T Consensus 108 ~l~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 108 NLTNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCTTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCCcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 6666666666666655 3333 22 56666666666665443333 35666666666666666553322 555566666
Q ss_pred EEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEE
Q 041374 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGF 336 (513)
Q Consensus 257 L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L 336 (513)
|++++|.+.... .+.. +++|+.+
T Consensus 182 L~l~~n~l~~~~--------~~~~-------------------------------------------------l~~L~~L 204 (347)
T 4fmz_A 182 LSLNYNQIEDIS--------PLAS-------------------------------------------------LTSLHYF 204 (347)
T ss_dssp EECTTSCCCCCG--------GGGG-------------------------------------------------CTTCCEE
T ss_pred EEccCCcccccc--------cccC-------------------------------------------------CCcccee
Confidence 666555543311 0222 3334444
Q ss_pred eccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccc
Q 041374 337 GLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEV 416 (513)
Q Consensus 337 ~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~ 416 (513)
++++|.+.+..+ +..+++|++|++++|.+. .++. +...+.|++|++++|.+++. ..+
T Consensus 205 ~l~~n~l~~~~~------------------~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 205 TAYVNQITDITP------------------VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp ECCSSCCCCCGG------------------GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ecccCCCCCCch------------------hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 444443332110 122344444444444443 2222 22223335555555555421 245
Q ss_pred cCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-e
Q 041374 417 GNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-K 495 (513)
Q Consensus 417 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~ 495 (513)
..+++|++|++++|.+.+ + ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..| +..++.| +
T Consensus 262 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 566667777777776663 2 345666777777777777766666666677777777777777765544 6666666 7
Q ss_pred EEccCCccc
Q 041374 496 MNETINDFC 504 (513)
Q Consensus 496 l~l~~n~l~ 504 (513)
+++++|+|+
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 777777664
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=258.53 Aligned_cols=303 Identities=21% Similarity=0.340 Sum_probs=221.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+... +.+..+++|++|++++|.++ .++. +.++++|++|++++|.++. ++ .+..++
T Consensus 44 ~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~--------~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~ 110 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT--------DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLT 110 (347)
T ss_dssp TTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC--------CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT
T ss_pred ccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc--------cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCC
Confidence 6799999999988764 34889999999999999987 4454 8899999999999999987 44 699999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++..+ +..+++|+.|++++|.....++. +. .+++|++|++++|.+.+. +. +..+++|++|++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LS-NMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GT-TCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEEC
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hh-hCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEc
Confidence 99999999999987644 88999999999999976645444 44 899999999999999854 33 889999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+.+..+ +..+++|+.+++++|.+.... .+..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~------------------ 236 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDIT--------PVANMTRLNSLKIGNNKITDL------------------ 236 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCC------------------
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCc--------hhhcCCcCCEEEccCCccCCC------------------
Confidence 9999985443 888999999999998776521 133444444444444433311
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+. +..+++|++|++++|.+++. ..+..+++|
T Consensus 237 --------~~-~~~l~~L~~L~l~~n~l~~~------------------~~~~~l~~L---------------------- 267 (347)
T 4fmz_A 237 --------SP-LANLSQLTWLEIGTNQISDI------------------NAVKDLTKL---------------------- 267 (347)
T ss_dssp --------GG-GTTCTTCCEEECCSSCCCCC------------------GGGTTCTTC----------------------
T ss_pred --------cc-hhcCCCCCEEECCCCccCCC------------------hhHhcCCCc----------------------
Confidence 11 33444555555555554421 012233444
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
++|++++|++++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..| +..+++|+.|++
T Consensus 268 ---~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 268 ---KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp ---CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred ---CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 5555555555432 245667788888888888877777778888888888888888876555 777888888888
Q ss_pred CCCCCC
Q 041374 476 SRNNLS 481 (513)
Q Consensus 476 ~~n~l~ 481 (513)
++|+|+
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=262.96 Aligned_cols=310 Identities=18% Similarity=0.180 Sum_probs=219.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.++++++.+....+..+.++++|++|++++|.+++. .+..|..+++|++|++++|.+.+..|..|.+++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 5788999999998886666788999999999999998732 234788999999999999999998888899999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.++...+..|.++++|++|++++|.+.+..|..+. .+++|++|++++|++++. .+..+++|+.|++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 999999999999977677789999999999999999954444444 899999999999999854 3667899999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
++|.+.+ +...++|++|++++|.+..... ...++|+.|++++|.+.+. .++..++. ++.++++
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls 256 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLTDT--AWLLNYPG-LVEVDLS 256 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCCCC--GGGGGCTT-CSEEECC
T ss_pred ccccccc-----cCCCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCccc--HHHcCCCC-ccEEECC
Confidence 9998874 3445689999999999876322 2236777888887777643 23333333 4444444
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+|.+.+..|..+..++ +|++|++++|+++ .+|... ...
T Consensus 257 ~n~l~~~~~~~~~~l~----------------------------------------~L~~L~L~~n~l~-~~~~~~-~~l 294 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQ----------------------------------------RLERLYISNNRLV-ALNLYG-QPI 294 (390)
T ss_dssp SSCCCEEESGGGTTCS----------------------------------------SCCEEECCSSCCC-EEECSS-SCC
T ss_pred CCcCCCcChhHccccc----------------------------------------cCCEEECCCCcCc-ccCccc-CCC
Confidence 4444444444444444 4555555555444 222222 112
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccccc
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGS 459 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 459 (513)
+.|++|++++|+++ .+|..+..+++|++|++++|++.+ ++ +..+++|++|++++|++...
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 23355555555554 344445555666666666666652 22 45566677777777766643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=264.39 Aligned_cols=271 Identities=18% Similarity=0.179 Sum_probs=198.8
Q ss_pred CCCcHHHHHHHHHHHhhCC-CCCCCCCCC----CCCCCCCcccceeeCC--------CCCcEEEEEcCCCCCccccCccc
Q 041374 30 LHSNETDRLAYLAIKSQLQ-DPLGVTKSW----NNSISLCQWTGVTCGH--------RHRRVTKLVLRNQSIGGFLSPYV 96 (513)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~~~~v~c~~--------~~~~v~~L~l~~~~~~~~~~~~l 96 (513)
..+...++.++++||.++. ++.++...| ....++|.|.|+.|.. ...+|+.|+++++.+. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 3455678999999999985 887788899 4566899999999942 2368999999999988 567778
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 101 ~~l~~L~~L~L~~n~l~--------~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM--------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp GGGTTCSEEEEESSCCC--------CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hhCCCCCEEECCCCCcc--------chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 88999999999999887 56777888999999999999988 5788899999999999999888888777665
Q ss_pred C---------CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccccccccc
Q 041374 177 N---------ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKID 247 (513)
Q Consensus 177 ~---------l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 247 (513)
. +++|++|++++|.+. .+|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 4 777777777777777 6676655 6777777777777777 35556777777777777777777677767
Q ss_pred ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccc
Q 041374 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV 327 (513)
Q Consensus 248 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 327 (513)
+..+++|++|++++|.+.+.. +..+..+++|+.|++++| .+.+.+|..+
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~------p~~~~~l~~L~~L~L~~n-------------------------~~~~~iP~~l 297 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGC-------------------------VNLSRLPSLI 297 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBC------CTTGGGCTTCCEEECTTC-------------------------TTCCCCCGGG
T ss_pred hcCCCCCCEEECCCCCchhhc------chhhhcCCCCCEEeCCCC-------------------------CchhhccHHH
Confidence 777777777777766655422 233444455555555554 4444555555
Q ss_pred cCCCCCCEEeccCCcCc
Q 041374 328 KNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 328 ~~~~~L~~L~l~~n~~~ 344 (513)
..+++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 55666666666655443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=9e-31 Score=272.13 Aligned_cols=333 Identities=15% Similarity=0.126 Sum_probs=253.6
Q ss_pred CCCCCCCCCCCCCc----ccceeeCC------C----------CCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCC
Q 041374 52 GVTKSWNNSISLCQ----WTGVTCGH------R----------HRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNN 111 (513)
Q Consensus 52 ~~~~~w~~~~~~c~----~~~v~c~~------~----------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 111 (513)
..+.+|.++..||. |..+.|+. . ..+++.++++++.+....+..+.++++|++|++++|.
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~ 86 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC
T ss_pred ccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC
Confidence 34577877666653 55444431 0 0456888999998888777778899999999999999
Q ss_pred CcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcC
Q 041374 112 LHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRL 191 (513)
Q Consensus 112 l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 191 (513)
+++.. |..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.++...+..|.++++|++|++++|.+
T Consensus 87 l~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 87 IEEID-------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp CCEEC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCC-------hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 98432 34788999999999999999998888899999999999999999988777789999999999999999
Q ss_pred cccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCC
Q 041374 192 EGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGD 271 (513)
Q Consensus 192 ~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 271 (513)
.+..|..+. .+++|++|++++|.+++. + +..+++|+.|++++|.+.+ +...++|+.|++++|.+.....
T Consensus 160 ~~~~~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-- 228 (597)
T 3oja_B 160 ERIEDDTFQ-ATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-- 228 (597)
T ss_dssp CBCCTTTTT-TCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC--
T ss_pred CCCChhhhh-cCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccc--
Confidence 965555555 899999999999999854 2 5678999999999998874 3456789999999999876332
Q ss_pred chhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccc
Q 041374 272 LDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAI 351 (513)
Q Consensus 272 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (513)
...++|+.|++++|.+.+. .++..++. ++.+++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 229 -------~~~~~L~~L~L~~n~l~~~--~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l----- 293 (597)
T 3oja_B 229 -------PVNVELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL----- 293 (597)
T ss_dssp -------SCCSCCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-----
T ss_pred -------ccCCCCCEEECCCCCCCCC--hhhccCCC-CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-----
Confidence 1225789999999988863 56666665 88888888888877777788888888888888877741
Q ss_pred cCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCc
Q 041374 352 GELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENH 431 (513)
Q Consensus 352 ~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 431 (513)
|..+..+++|+.|++++|.+. .+|..+.... .|+.|++++|.+++. + +..+++|+.|++++|+
T Consensus 294 ------------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~-~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 294 ------------NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------------ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSC
T ss_pred ------------CcccccCCCCcEEECCCCCCC-ccCcccccCC-CCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCC
Confidence 222344577888888888776 6666654443 347777777777633 2 5566777777777777
Q ss_pred cCc
Q 041374 432 FSI 434 (513)
Q Consensus 432 ~~~ 434 (513)
+.+
T Consensus 357 ~~~ 359 (597)
T 3oja_B 357 WDC 359 (597)
T ss_dssp EEH
T ss_pred CCC
Confidence 654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-30 Score=247.64 Aligned_cols=130 Identities=18% Similarity=0.294 Sum_probs=84.0
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
+.|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..++ ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEE
Confidence 45666666666666655556666666666666666666666666666666666666666665 5665543 5777888
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccc--cccccccCCCCCcEEEcCCCCC
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG--QVKIDFNRLPNLFRLNFGKNNL 264 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~ 264 (513)
+++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 88887776655667777777777777777642 3444455555555555555544
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=249.09 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=94.2
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 180 (513)
++++++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++
T Consensus 34 ~l~~l~~~~~~l~--------~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--------AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCS--------SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCCcc--------ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 5677777777766 4454442 57888888888888766777888888888888888888777777888888
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccc
Q 041374 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 181 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 241 (513)
|++|++++|.+. .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 104 L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 888888888777 6676554 67788888888777554555677777777777777764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=246.43 Aligned_cols=291 Identities=20% Similarity=0.274 Sum_probs=203.3
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.++++++++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEE
T ss_pred CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEE
Confidence 478899999888875 665554 6899999999999988777888889999999998888855566665 788888888
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccc
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
+++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------- 161 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---------------------- 161 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----------------------
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC----------------------
Confidence 8888887 5665543 68888888888887766666777888888887777654311
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC 370 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~ 370 (513)
..+..+..+++|++|++++|.++. +|.. + .
T Consensus 162 -------------------------------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~----------------~--~ 191 (330)
T 1xku_A 162 -------------------------------IENGAFQGMKKLSYIRIADTNITT-IPQG----------------L--P 191 (330)
T ss_dssp -------------------------------BCTTGGGGCTTCCEEECCSSCCCS-CCSS----------------C--C
T ss_pred -------------------------------cChhhccCCCCcCEEECCCCcccc-CCcc----------------c--c
Confidence 112234445566666666666552 2211 1 1
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++|++|++++|++.+..|..+.. .+.|++|++++|++++..+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence 46666677766666444444433 334477777777777666666777788888888888877 6777778888888888
Q ss_pred CCCCcccccccccccC------CCCCCEEECCCCCCCc--ccchhhhcccCc-eEEccCCc
Q 041374 451 MEGNSVTGSIPLALNT------LKSIKELDLSRNNLSG--HIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~p~~l~~l~~l-~l~l~~n~ 502 (513)
+++|++++..+..|+. .+.++.+++++|++.. ..|..+..+..+ .+++++|+
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8888887665555543 3678888888888753 456677888888 88888874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-32 Score=256.59 Aligned_cols=164 Identities=30% Similarity=0.519 Sum_probs=122.2
Q ss_pred CCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC-CCCEEecccCcCcccChHHHHhhhcccceE
Q 041374 323 IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ-NLMLLSVSNNKLTGALPPQILGILTLSILL 401 (513)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L 401 (513)
+|..+..+++|++|++++|.+++.+|..+ ..++ +|++|++++|.+.+.+|..+.... |++|
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----------------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L 202 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDSY----------------GSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFV 202 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGG----------------GCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEE
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHHH----------------hhhhhcCcEEECcCCeeeccCChHHhCCc--ccEE
Confidence 33444555566666666666665444333 2333 677777777777766666655443 5788
Q ss_pred EccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 402 DLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
++++|++++..|..+..+++|+.|++++|.+.+..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 8888888777777888888888999998888865555 777888999999999988888888888889999999999988
Q ss_pred cccchhhhcccCc-eEEccCCc-cccc
Q 041374 482 GHIPEFLENLSFN-KMNETIND-FCHH 506 (513)
Q Consensus 482 ~~~p~~l~~l~~l-~l~l~~n~-l~~~ 506 (513)
|.+|.. ..++.| .+++++|+ ++|.
T Consensus 282 ~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 282 GEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred ccCCCC-ccccccChHHhcCCCCccCC
Confidence 888876 778888 88888887 7764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-34 Score=292.16 Aligned_cols=371 Identities=16% Similarity=0.135 Sum_probs=238.9
Q ss_pred CcEEEEEcCCCCCccccCc-cccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCcccc-CC
Q 041374 76 RRVTKLVLRNQSIGGFLSP-YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESL-GQ 153 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~ 153 (513)
.+++.|+++++++...... .+..+++|++|++++|.++.... ..++..+..+++|++|++++|.+....+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH---HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH---HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 4689999999998765433 37789999999999998874311 1345677888999999999999876444333 23
Q ss_pred CC----CCCEEEcccccCCc----cCcccccCCCCCcEEeCCCCcCcccCCccc----cCCCCCCCEEEccCCccccc--
Q 041374 154 LR----SLSFLDISENAFSG----MFHSSIFNISSLELIYPLENRLEGSLPVNI----GFSLPNLEDLSVRQNNYTGS-- 219 (513)
Q Consensus 154 l~----~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~----~~~l~~L~~L~l~~n~l~~~-- 219 (513)
++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ....++|++|++++|++++.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 79999999999985 457888899999999999999874333322 22356899999999998864
Q ss_pred --CcccccCCCCCCeeeCcccccccccccccc-----CCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccc
Q 041374 220 --LPHSLSNASNLQLLDLSLNHFSGQVKIDFN-----RLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTN 292 (513)
Q Consensus 220 --~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n 292 (513)
++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.... ..++..+..+++|+.|++++|
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHHHHHHHhCCCccEEeccCC
Confidence 355667789999999999998765544443 36689999999998765321 113455667788888888888
Q ss_pred ccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCC
Q 041374 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN 372 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~ 372 (513)
.+.+.....+.. ..+..+++|++|++++|.+++..... ++..+..+++
T Consensus 238 ~l~~~~~~~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~------------l~~~l~~~~~ 285 (461)
T 1z7x_W 238 KLGDVGMAELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGD------------LCRVLRAKES 285 (461)
T ss_dssp BCHHHHHHHHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHH------------HHHHHHHCTT
T ss_pred cCChHHHHHHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHH------------HHHHHhhCCC
Confidence 765432222211 11123456666666666655321110 1222334556
Q ss_pred CCEEecccCcCcccChHHHHhh----hcccceEEccCCcCccc----CCccccCCCCCCEEeCCCCccCccCCccccC--
Q 041374 373 LMLLSVSNNKLTGALPPQILGI----LTLSILLDLSGNLLTGS----IPTEVGNLKNLVQLDLSENHFSIEIPVSLSA-- 442 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~----~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-- 442 (513)
|++|++++|.+.+..+..+... .+.|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 6666666666553333333222 13446666666666543 3344445566666666666665444333321
Q ss_pred ---CCCCCEEeCCCCcccc----cccccccCCCCCCEEECCCCCCCcc
Q 041374 443 ---CTTLEYLYMEGNSVTG----SIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 443 ---l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
.++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 4566666666666664 5566666666666666666666543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=249.54 Aligned_cols=290 Identities=19% Similarity=0.247 Sum_probs=186.3
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
.+++.++++++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEE
T ss_pred ccCCEEECCCCCccc-cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEE
Confidence 378999999999875 666654 7899999999999988888899999999999999998855455555 788999999
Q ss_pred ccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccc
Q 041374 211 VRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
+++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..... .+..+..+ +|+.|+++
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF----EPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS----CTTSSCSC-CCSCCBCC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC----CcccccCC-ccCEEECc
Confidence 9999888 5666554 788999999988886666668888888888888887653110 01112222 34444444
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC 370 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~ 370 (513)
+|.+.+ +|..+. ++|++|++++|.+.+..+.. +..+
T Consensus 181 ~n~l~~--------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~----------------l~~l 216 (332)
T 2ft3_A 181 EAKLTG--------------------------IPKDLP--ETLNELHLDHNKIQAIELED----------------LLRY 216 (332)
T ss_dssp SSBCSS--------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTS----------------STTC
T ss_pred CCCCCc--------------------------cCcccc--CCCCEEECCCCcCCccCHHH----------------hcCC
Confidence 443321 111111 34444455555444322211 2223
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++| ++|++++|++++..+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 217 ~~L-------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 217 SKL-------------------------YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp TTC-------------------------SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCC-------------------------CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 344 55555555555444445566666777777777666 5666666667777777
Q ss_pred CCCCcccccccccccC------CCCCCEEECCCCCCC--cccchhhhcccCc-eEEccCCc
Q 041374 451 MEGNSVTGSIPLALNT------LKSIKELDLSRNNLS--GHIPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~p~~l~~l~~l-~l~l~~n~ 502 (513)
+++|++++..+..+.. .+.|+.|++++|++. +..|..+..++.+ .+++++|+
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7777766555544443 245677777777765 4556667777777 77777664
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-34 Score=291.03 Aligned_cols=341 Identities=15% Similarity=0.076 Sum_probs=219.6
Q ss_pred CCCCCCCEEEcccccCCcc----CcccccCCCCCcEEeCCCCcCcccCCccccCCCC----CCCEEEccCCcccc----c
Q 041374 152 GQLRSLSFLDISENAFSGM----FHSSIFNISSLELIYPLENRLEGSLPVNIGFSLP----NLEDLSVRQNNYTG----S 219 (513)
Q Consensus 152 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~----~L~~L~l~~n~l~~----~ 219 (513)
..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+...++ +|++|++++|.++. .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 3344444444444444321 2233334444444444444443222222221222 56666666666653 3
Q ss_pred CcccccCCCCCCeeeCccccccccccccc-----cCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccccccccccc
Q 041374 220 LPHSLSNASNLQLLDLSLNHFSGQVKIDF-----NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIF 294 (513)
Q Consensus 220 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 294 (513)
++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.++..... .++..+..+++|+.|++++|.+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCCc
Confidence 45566666677777777776654333322 2245677777777766542211 1234455566777777777766
Q ss_pred CCcCchhhhc----cccccceEEeccccceec----CCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCcc
Q 041374 295 GGVLPLSIAN----LSSTIILFTMGLNQIYGT----IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSS 366 (513)
Q Consensus 295 ~~~~~~~~~~----~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~ 366 (513)
.+..+..+.. ....++.+++++|.+.+. ++..+..+++|++|++++|.+.+.....+. +..
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-----------~~~ 251 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC-----------PGL 251 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH-----------HHH
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH-----------HHH
Confidence 5544444332 122477788887777653 466677889999999999988753221110 011
Q ss_pred ccCCCCCCEEecccCcCccc----ChHHHHhhhcccceEEccCCcCcccCCcccc-----CCCCCCEEeCCCCccCcc--
Q 041374 367 LGNCQNLMLLSVSNNKLTGA----LPPQILGILTLSILLDLSGNLLTGSIPTEVG-----NLKNLVQLDLSENHFSIE-- 435 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~----~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~-- 435 (513)
...+++|++|++++|.+++. ++..+.. .+.|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 22468999999999999754 4544433 44569999999999765444333 337999999999999865
Q ss_pred --CCccccCCCCCCEEeCCCCcccccccccccC-----CCCCCEEECCCCCCCc----ccchhhhcccCc-eEEccCCcc
Q 041374 436 --IPVSLSACTTLEYLYMEGNSVTGSIPLALNT-----LKSIKELDLSRNNLSG----HIPEFLENLSFN-KMNETINDF 503 (513)
Q Consensus 436 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~p~~l~~l~~l-~l~l~~n~l 503 (513)
++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..++.| ++++++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 4566778899999999999998766655543 6799999999999996 789999999999 999999999
Q ss_pred ccc
Q 041374 504 CHH 506 (513)
Q Consensus 504 ~~~ 506 (513)
++.
T Consensus 411 ~~~ 413 (461)
T 1z7x_W 411 GDA 413 (461)
T ss_dssp CHH
T ss_pred CHH
Confidence 865
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=238.19 Aligned_cols=179 Identities=19% Similarity=0.264 Sum_probs=98.4
Q ss_pred CCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEE
Q 041374 59 NSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNID 137 (513)
Q Consensus 59 ~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~ 137 (513)
...+.|.|.++ |+ .+++.+.. +|..+. ++|++|++++|.+++ ++. .+.++++|++|+
T Consensus 25 ~~~~~C~~~~~-c~----------~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~ 82 (353)
T 2z80_A 25 QASLSCDRNGI-CK----------GSSGSLNS-IPSGLT--EAVKSLDLSNNRITY--------ISNSDLQRCVNLQALV 82 (353)
T ss_dssp --CCEECTTSE-EE----------CCSTTCSS-CCTTCC--TTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEE
T ss_pred ccCCCCCCCeE-ee----------CCCCCccc-cccccc--ccCcEEECCCCcCcc--------cCHHHhccCCCCCEEE
Confidence 34567888776 53 34444443 333332 467777777777762 222 566777777777
Q ss_pred eecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCc-cccCCCCCCCEEEccCCc-
Q 041374 138 IAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV-NIGFSLPNLEDLSVRQNN- 215 (513)
Q Consensus 138 l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~l~~n~- 215 (513)
+++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+. .+|. ..+..+++|++|++++|.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSS
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcc
Confidence 7777777666666777777777777777776555444556666666666666555 4443 222245555555555552
Q ss_pred ccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcC
Q 041374 216 YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 216 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 333333344444444444444444444333333333333333333
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=233.27 Aligned_cols=255 Identities=21% Similarity=0.273 Sum_probs=165.3
Q ss_pred CCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEee
Q 041374 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIA 139 (513)
Q Consensus 61 ~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~ 139 (513)
.+.|.|.++.|... ++.. +|..+ .++|++|++++|.++ .+|. .+.++++|++|+++
T Consensus 4 ~C~C~~~~l~c~~~------------~l~~-ip~~~--~~~l~~L~L~~n~l~--------~i~~~~~~~l~~L~~L~L~ 60 (306)
T 2z66_A 4 RCSCSGTEIRCNSK------------GLTS-VPTGI--PSSATRLELESNKLQ--------SLPHGVFDKLTQLTKLSLS 60 (306)
T ss_dssp TCEEETTEEECCSS------------CCSS-CCSCC--CTTCCEEECCSSCCC--------CCCTTTTTTCTTCSEEECC
T ss_pred CCeeCCCEEEcCCC------------Cccc-CCCCC--CCCCCEEECCCCccC--------ccCHhHhhccccCCEEECC
Confidence 46688998888642 1211 22222 246677777777665 3333 35666777777777
Q ss_pred cCccccc--CccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccc
Q 041374 140 GNRLHSR--VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT 217 (513)
Q Consensus 140 ~n~l~~~--~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~ 217 (513)
+|.+... .+..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.+..+......+++|++|++++|.++
T Consensus 61 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp SSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence 7766532 24455566777777777776663 34456667777777777777663222123336677777777777776
Q ss_pred ccCcccccCCCCCCeeeCccccccc-cccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCC
Q 041374 218 GSLPHSLSNASNLQLLDLSLNHFSG-QVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 218 ~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------TAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTSCCSB
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH------HHhcCCCCCCEEECCCCccCc
Confidence 6666666677777777777777665 456666777777777777776665322 345566677777777777776
Q ss_pred cCchhhhccccccceEEeccccceecCCccccCCC-CCCEEeccCCcCccC
Q 041374 297 VLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLV-NLNGFGLEYNQLTGP 346 (513)
Q Consensus 297 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~ 346 (513)
..+..+..++. ++.+++++|.+.+..|..+..++ +|++|++++|.+.+.
T Consensus 214 ~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 214 LDTFPYKCLNS-LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCSGGGTTCTT-CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cChhhccCccc-CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 66666666655 77888888888777777777774 888888988888764
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-30 Score=267.57 Aligned_cols=433 Identities=13% Similarity=0.085 Sum_probs=290.6
Q ss_pred CcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCc---ccCCCCCCCC-----CcccCCCCCCCE
Q 041374 64 CQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLH---GEIPYEHGQL-----PPSIGNLSALQN 135 (513)
Q Consensus 64 c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l-----~~~~~~l~~L~~ 135 (513)
.+|.++.+.. -+.+.+.+ .....++..+..+++|++|+++++... +.+|...+.. +.....+++|++
T Consensus 42 k~W~~~~~~~----~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 116 (592)
T 3ogk_B 42 RRWFKIDSET----REHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116 (592)
T ss_dssp HHHHHHHHHH----CCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred HHHHHhhhcc----ccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCe
Confidence 3687775421 12222322 222334455678888999999876432 2222221111 111126889999
Q ss_pred EEeecCcccccCccccCC-CC-CCCEEEccccc-CCc-cCcccccCCCCCcEEeCCCCcCcccCCc---cccCCCCCCCE
Q 041374 136 IDIAGNRLHSRVPESLGQ-LR-SLSFLDISENA-FSG-MFHSSIFNISSLELIYPLENRLEGSLPV---NIGFSLPNLED 208 (513)
Q Consensus 136 L~l~~n~l~~~~p~~l~~-l~-~L~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L~l~~n~l~~~lp~---~~~~~l~~L~~ 208 (513)
|++++|.+++..+..+.. ++ +|++|++++|. ++. ..+....++++|++|++++|.+.+.-.. .+...+++|++
T Consensus 117 L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~ 196 (592)
T 3ogk_B 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196 (592)
T ss_dssp EEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCE
T ss_pred EEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccE
Confidence 999999887665555555 33 49999999886 221 1222334788999999999987644211 12225789999
Q ss_pred EEccCCccc----ccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccc
Q 041374 209 LSVRQNNYT----GSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKL 284 (513)
Q Consensus 209 L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L 284 (513)
|++++|.++ +.++..+.++++|++|++++|.+.+ .+..+..+++|++|+++........ ......+..+++|
T Consensus 197 L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~~~~L 272 (592)
T 3ogk_B 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMNLVFPRKL 272 (592)
T ss_dssp EECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSCCCCCTTC
T ss_pred EEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHHhhccccc
Confidence 999999887 2344556678999999999988875 5677888899999999764322111 1233556777888
Q ss_pred ccccccccccCCcCchhhhccccccceEEeccccceecCC-ccccCCCCCCEEeccCCcCccC-CC---ccccCCCCeEE
Q 041374 285 EAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIP-PEVKNLVNLNGFGLEYNQLTGP-IP---HAIGELRNLQL 359 (513)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~-~~---~~~~~l~~L~l 359 (513)
+.++++++ ..+.+|..+..++. ++.+++++|.+.+... ..+..+++|++|+++ +.+.+. ++ ..+.+++.|++
T Consensus 273 ~~L~l~~~-~~~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 273 CRLGLSYM-GPNEMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp CEEEETTC-CTTTGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccCcccc-chhHHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 88888774 33445566666665 8899998888654433 345778889999988 444332 22 23467888888
Q ss_pred ec-----------c-CC-----ccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEcc----CCcCccc-----CC
Q 041374 360 RG-----------N-VP-----SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLS----GNLLTGS-----IP 413 (513)
Q Consensus 360 ~~-----------~-~~-----~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~----~n~l~~~-----~~ 413 (513)
++ + +. .....+++|++|+++.+.+++..+..+....+.|+.|+++ .|.+++. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 82 1 11 1124589999999988899877777776656667999996 5677653 33
Q ss_pred ccccCCCCCCEEeCCCCc--cCccCCcccc-CCCCCCEEeCCCCccccc-ccccccCCCCCCEEECCCCCCCcc-cchhh
Q 041374 414 TEVGNLKNLVQLDLSENH--FSIEIPVSLS-ACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGH-IPEFL 488 (513)
Q Consensus 414 ~~~~~l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l 488 (513)
..+..+++|++|++++|. +++..+..+. .+++|++|++++|++++. ++..+..+++|++|++++|++++. ++...
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 335678999999998654 5655555443 488999999999999863 455667889999999999998755 45556
Q ss_pred hcccCc-eEEccCCcccccCC
Q 041374 489 ENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 489 ~~l~~l-~l~l~~n~l~~~~p 508 (513)
..++.| ++++++|++++.-.
T Consensus 510 ~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHCSSCCEEEEESCBCCTTCT
T ss_pred HhcCccCeeECcCCcCCHHHH
Confidence 788999 99999999887643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=225.24 Aligned_cols=231 Identities=23% Similarity=0.287 Sum_probs=108.3
Q ss_pred CCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEE
Q 041374 179 SSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258 (513)
Q Consensus 179 ~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 258 (513)
..++.|++++|.+. .+|..++ .+++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555555555555 5555554 4555555555555555 45555555555555555555554 3444444444444444
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEec
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (513)
+++|.+ .+.+|..+... ..+..+..+++|++|++
T Consensus 157 L~~n~~------------------------------~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 157 IRACPE------------------------------LTELPEPLAST----------------DASGEHQGLVNLQSLRL 190 (328)
T ss_dssp EEEETT------------------------------CCCCCSCSEEE----------------C-CCCEEESTTCCEEEE
T ss_pred CCCCCC------------------------------ccccChhHhhc----------------cchhhhccCCCCCEEEC
Confidence 444332 22222221110 11122344556666666
Q ss_pred cCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccC
Q 041374 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGN 418 (513)
Q Consensus 339 ~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~ 418 (513)
++|.++ .+| ..+..+++|++|++++|.+. .+|..+... +.|++|++++|.+.+.+|..+..
T Consensus 191 ~~n~l~-~lp----------------~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 191 EWTGIR-SLP----------------ASIANLQNLKSLKIRNSPLS-ALGPAIHHL-PKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp EEECCC-CCC----------------GGGGGCTTCCEEEEESSCCC-CCCGGGGGC-TTCCEEECTTCTTCCBCCCCTTC
T ss_pred cCCCcC-cch----------------HhhcCCCCCCEEEccCCCCC-cCchhhccC-CCCCEEECcCCcchhhhHHHhcC
Confidence 666555 222 22334455555555555554 233332222 22244444444444444444444
Q ss_pred CCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCC
Q 041374 419 LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478 (513)
Q Consensus 419 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 478 (513)
+++|++|++++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..+
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 444444444444444444444444444444444444444444444444444444444433
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=239.69 Aligned_cols=158 Identities=25% Similarity=0.314 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCCcccceeeC------CCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcc
Q 041374 53 VTKSWNNSISLCQWTGVTCG------HRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPS 126 (513)
Q Consensus 53 ~~~~w~~~~~~c~~~~v~c~------~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~ 126 (513)
.+..|.....+|.|.+..|. -....++.|+++++.+. .+|..+. ++|++|++++|.++ .+|.
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~--------~lp~- 78 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--------SLPA- 78 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS--------CCCC-
T ss_pred HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC--------CCCC-
Confidence 34556666678888664221 01134677777777776 3444443 67777777777766 3443
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L 206 (513)
.+++|++|++++|.+++ +|. .+++|++|++++|.+++... .+++|+.|++++|++. .+|.. +++|
T Consensus 79 --~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L 143 (622)
T 3g06_A 79 --LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGL 143 (622)
T ss_dssp --CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCC----CTTC
T ss_pred --cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCC----CCCC
Confidence 35677777777777665 443 45677777777776664322 3455555555555555 34432 2455
Q ss_pred CEEEccCCcccccCcccccCCCCCCeeeCcccccc
Q 041374 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 241 (513)
++|++++|++++ +|. .+++|+.|++++|.+.
T Consensus 144 ~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 144 QELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 555555555542 232 1234444444444444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=230.18 Aligned_cols=269 Identities=27% Similarity=0.306 Sum_probs=165.5
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
.++++|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.++.. |. .++
T Consensus 40 ~~l~~L~ls~n~L~--------~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~ 101 (622)
T 3g06_A 40 NGNAVLNVGESGLT--------TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPP 101 (622)
T ss_dssp HCCCEEECCSSCCS--------CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCC-CC---CCT
T ss_pred CCCcEEEecCCCcC--------ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcC-CC---CCC
Confidence 46899999999988 5555554 789999999999886 554 568899999999988743 32 556
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
+|++|++++|.+. .+|. .+++|++|++++|+++ .+|.. +++|++|++++|.+.+ +|. .+++|+.|++
T Consensus 102 ~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L 168 (622)
T 3g06_A 102 GLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWA 168 (622)
T ss_dssp TCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence 7777777777776 4554 3456777777777666 34432 3566666666666553 221 2344555555
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEecc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLE 339 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (513)
++|.++. +| ..+++|+.|+++
T Consensus 169 ~~N~l~~--------------------------------------------------------l~---~~~~~L~~L~Ls 189 (622)
T 3g06_A 169 YNNQLTS--------------------------------------------------------LP---MLPSGLQELSVS 189 (622)
T ss_dssp CSSCCSC--------------------------------------------------------CC---CCCTTCCEEECC
T ss_pred CCCCCCC--------------------------------------------------------Cc---ccCCCCcEEECC
Confidence 5544433 11 123445555555
Q ss_pred CCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCC
Q 041374 340 YNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419 (513)
Q Consensus 340 ~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l 419 (513)
+|.+++ +|.. .++|+.|++++|.++ .+|.. .+.|+.|++++|++++ +| ..+
T Consensus 190 ~N~l~~-l~~~-------------------~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 190 DNQLAS-LPTL-------------------PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp SSCCSC-CCCC-------------------CTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCC
T ss_pred CCCCCC-CCCc-------------------cchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCC
Confidence 555542 1111 135555555555554 33321 2334666666666653 33 344
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
++|+.|++++|.+. .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 66777777777766 4554 4566777777777777 6666777777777777777777777776665544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=217.43 Aligned_cols=250 Identities=21% Similarity=0.248 Sum_probs=194.1
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCcc--CcccccCCCC
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGM--FHSSIFNISS 180 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~ 180 (513)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++
T Consensus 10 ~~l~c~~~~l~--------~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLT--------SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCS--------SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CEEEcCCCCcc--------cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 46788888877 5665443 6899999999999975555689999999999999998744 3667778999
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 181 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
|++|++++|.+. .+|..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 80 L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 999999999998 6777766 79999999999999985544 57889999999999999998888888999999999999
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEecc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLE 339 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (513)
++|.+.+. ..+..+..+++|+.|++++|.+.+..|..+..++. ++.+++++|.+.+..+..+..+++|++|+++
T Consensus 158 ~~n~l~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 158 AGNSFQEN-----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp TTCEEGGG-----EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCCccccc-----cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC-CCEEECCCCccCccChhhccCcccCCEeECC
Confidence 99987651 12345677788888888888887777777766665 7777777777776666566677777777777
Q ss_pred CCcCccCCCccccCCCCeEEeccCCccccCC-CCCCEEecccCcCccc
Q 041374 340 YNQLTGPIPHAIGELRNLQLRGNVPSSLGNC-QNLMLLSVSNNKLTGA 386 (513)
Q Consensus 340 ~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~L~~L~ls~n~l~~~ 386 (513)
+|.+.+..+..+ ..+ ++|++|++++|.+.+.
T Consensus 232 ~N~l~~~~~~~~----------------~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 232 LNHIMTSKKQEL----------------QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCBCSSSSC----------------CCCCTTCCEEECTTCCEECS
T ss_pred CCCCcccCHHHH----------------HhhhccCCEEEccCCCeecc
Confidence 777765544433 222 3677777777776644
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-29 Score=263.36 Aligned_cols=401 Identities=14% Similarity=0.070 Sum_probs=264.6
Q ss_pred CcEEEEEcCCCCCc---cccCccc------------cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCC-CC-CCCEEEe
Q 041374 76 RRVTKLVLRNQSIG---GFLSPYV------------GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGN-LS-ALQNIDI 138 (513)
Q Consensus 76 ~~v~~L~l~~~~~~---~~~~~~l------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~-l~-~L~~L~l 138 (513)
.+++.|+++++... +.+|..+ ..+++|++|+|++|.+++.. +..+.. ++ +|++|++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-------~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD-------LDRLAKARADDLETLKL 145 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-------HHHHHHHHGGGCCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHH-------HHHHHHhccccCcEEEC
Confidence 56888888764321 1222222 26888999999988776432 223333 33 4899999
Q ss_pred ecCcc-cc-cCccccCCCCCCCEEEcccccCCcc----CcccccCCCCCcEEeCCCCcCc----ccCCccccCCCCCCCE
Q 041374 139 AGNRL-HS-RVPESLGQLRSLSFLDISENAFSGM----FHSSIFNISSLELIYPLENRLE----GSLPVNIGFSLPNLED 208 (513)
Q Consensus 139 ~~n~l-~~-~~p~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~----~~lp~~~~~~l~~L~~ 208 (513)
++|.. .. .++.....+++|++|++++|.+++. ++..+.++++|+.|++++|.+. +.++..+. .+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~-~~~~L~~ 224 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR-NCRSLVS 224 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH-HCTTCCE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh-hCCCCcE
Confidence 88762 21 1222334678899999999887655 3334567888999999888876 22333333 5788999
Q ss_pred EEccCCcccccCcccccCCCCCCeeeCcccccc---ccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccc
Q 041374 209 LSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFS---GQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLE 285 (513)
Q Consensus 209 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~ 285 (513)
|++++|.+.+ ++..+..+++|++|++++.... ...+..+..+++|+.++++++... ..+..+..+++|+
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-------EMPILFPFAAQIR 296 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-------TGGGGGGGGGGCC
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-------HHHHHHhhcCCCc
Confidence 9999888874 6777888888888888753322 233445677788888888764322 2345566778888
Q ss_pred cccccccccCCcCch-hhhccccccceEEeccccceecCCccccCCCCCCEEeccC-----------CcCccCCC----c
Q 041374 286 AFGLDTNIFGGVLPL-SIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY-----------NQLTGPIP----H 349 (513)
Q Consensus 286 ~L~l~~n~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~----~ 349 (513)
.|++++|.+.+.... .+..+++ ++.+++..+-..+.++.....+++|++|++++ +.+++... .
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~-L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPN-LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTT-CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcC-CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 888888876554432 2345554 88888874333333444445678888888883 45553221 2
Q ss_pred cccCCCCeEEecc-----CCccccC-CCCCCEEecc----cCcCccc-----ChHHHHhhhcccceEEccCCc--CcccC
Q 041374 350 AIGELRNLQLRGN-----VPSSLGN-CQNLMLLSVS----NNKLTGA-----LPPQILGILTLSILLDLSGNL--LTGSI 412 (513)
Q Consensus 350 ~~~~l~~L~l~~~-----~~~~l~~-~~~L~~L~ls----~n~l~~~-----~p~~~~~~~~~l~~L~l~~n~--l~~~~ 412 (513)
...+++.|++..+ .+..+.. +++|+.|+++ .+.+++. ++.. ....+.|++|++++|. +++..
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCCccHHH
Confidence 3567777777443 2233443 8899999997 5566642 2322 3445566999998654 66555
Q ss_pred Ccccc-CCCCCCEEeCCCCccCcc-CCccccCCCCCCEEeCCCCccccc-ccccccCCCCCCEEECCCCCCCcccchhh-
Q 041374 413 PTEVG-NLKNLVQLDLSENHFSIE-IPVSLSACTTLEYLYMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIPEFL- 488 (513)
Q Consensus 413 ~~~~~-~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~l- 488 (513)
+..+. .+++|++|++++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|+.|++++|++++.....+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 44444 488999999999998863 345557889999999999998755 44555678999999999999987644444
Q ss_pred hcccCc
Q 041374 489 ENLSFN 494 (513)
Q Consensus 489 ~~l~~l 494 (513)
..++.+
T Consensus 535 ~~~p~l 540 (592)
T 3ogk_B 535 MARPYW 540 (592)
T ss_dssp GCCTTE
T ss_pred HhCCCc
Confidence 356666
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=226.05 Aligned_cols=236 Identities=20% Similarity=0.181 Sum_probs=162.2
Q ss_pred cCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCch
Q 041374 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLD 273 (513)
Q Consensus 194 ~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 273 (513)
.+|..+. +++++|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++....
T Consensus 68 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 140 (452)
T 3zyi_A 68 EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS---- 140 (452)
T ss_dssp SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT----
T ss_pred ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh----
Confidence 4554432 466777777777776666667777777777777777766666667777777777777766654322
Q ss_pred hhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccC
Q 041374 274 FIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGE 353 (513)
Q Consensus 274 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 353 (513)
..+..+++|+.|++++|.+. ...+..+..+++|++|++++|+..+.++.
T Consensus 141 --~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---- 189 (452)
T 3zyi_A 141 --GAFEYLSKLRELWLRNNPIE-------------------------SIPSYAFNRVPSLMRLDLGELKKLEYISE---- 189 (452)
T ss_dssp --TTSSSCTTCCEEECCSCCCC-------------------------EECTTTTTTCTTCCEEECCCCTTCCEECT----
T ss_pred --hhhcccCCCCEEECCCCCcc-------------------------eeCHhHHhcCCcccEEeCCCCCCccccCh----
Confidence 22334444444444444333 23334567788899999988654433332
Q ss_pred CCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccC
Q 041374 354 LRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFS 433 (513)
Q Consensus 354 l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 433 (513)
..+..+++|++|++++|++. .+|. + .....|++|++++|++++..|..+..+++|+.|++++|.+.
T Consensus 190 -----------~~~~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 190 -----------GAFEGLFNLKYLNLGMCNIK-DMPN-L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp -----------TTTTTCTTCCEEECTTSCCS-SCCC-C-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred -----------hhccCCCCCCEEECCCCccc-cccc-c-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 23455688899999999887 4443 2 33445588888888888777788888888888888888888
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 434 IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 434 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777788888888888888888888666677778888888888888865
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=224.84 Aligned_cols=247 Identities=22% Similarity=0.210 Sum_probs=176.8
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCC
Q 041374 182 ELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGK 261 (513)
Q Consensus 182 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 261 (513)
+.++..+..+. .+|..+. ++++.|++++|++++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44555555555 6666543 5677788888887766667777788888888888877766667777777777777777
Q ss_pred CCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCC
Q 041374 262 NNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN 341 (513)
Q Consensus 262 n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 341 (513)
|.++.... ..+..+++|+.|++++|.+ ....+..+..+++|++|++++|
T Consensus 122 n~l~~~~~------~~~~~l~~L~~L~L~~N~i-------------------------~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 122 NRLTTIPN------GAFVYLSKLKELWLRNNPI-------------------------ESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp SCCSSCCT------TTSCSCSSCCEEECCSCCC-------------------------CEECTTTTTTCTTCCEEECCCC
T ss_pred CcCCeeCH------hHhhccccCceeeCCCCcc-------------------------cccCHHHhhhCcccCEeCCCCC
Confidence 77665332 2234445555555554443 3333445677888999999986
Q ss_pred cCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCC
Q 041374 342 QLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKN 421 (513)
Q Consensus 342 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~ 421 (513)
+..+.++. ..+..+++|++|++++|+++ .+|. +.....|++|++++|++++..+..+..+++
T Consensus 171 ~~l~~i~~---------------~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 171 KRLSYISE---------------GAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp TTCCEECT---------------TTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCcceeCc---------------chhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCcc
Confidence 54433332 23556688999999999887 5663 233445688888888888777888888888
Q ss_pred CCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 422 LVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 422 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888888888888777888888888888888888888777777788888888888888874
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=227.07 Aligned_cols=247 Identities=17% Similarity=0.186 Sum_probs=169.8
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCC
Q 041374 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNC 281 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~ 281 (513)
.+++|++|++++|++++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ +...
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----------l~~~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----------LLVG 98 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----------EEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----------ccCC
Confidence 44566666666666665555566666666666666666654433 6666666666666665543 1122
Q ss_pred cccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEec
Q 041374 282 SKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRG 361 (513)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~ 361 (513)
++|+.|++++|.+.+ ..+. .+++|++|++++|.+++..+..
T Consensus 99 ~~L~~L~l~~n~l~~-------------------------~~~~---~~~~L~~L~l~~N~l~~~~~~~----------- 139 (317)
T 3o53_A 99 PSIETLHAANNNISR-------------------------VSCS---RGQGKKNIYLANNKITMLRDLD----------- 139 (317)
T ss_dssp TTCCEEECCSSCCSE-------------------------EEEC---CCSSCEEEECCSSCCCSGGGBC-----------
T ss_pred CCcCEEECCCCccCC-------------------------cCcc---ccCCCCEEECCCCCCCCccchh-----------
Confidence 444555554444432 2211 2456788888888777543333
Q ss_pred cCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccc
Q 041374 362 NVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLS 441 (513)
Q Consensus 362 ~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 441 (513)
+..+++|++|++++|.+.+..+..+......|++|++++|.+++. + ....+++|++|++++|.+. .+|..+.
T Consensus 140 -----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 211 (317)
T 3o53_A 140 -----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ 211 (317)
T ss_dssp -----TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGG
T ss_pred -----hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhc
Confidence 344577888888888887655665554555668888888888754 3 2335889999999999998 4566688
Q ss_pred CCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC-cccchhhhcccCc-eEEccCC-cccccCCC
Q 041374 442 ACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS-GHIPEFLENLSFN-KMNETIN-DFCHHKPK 509 (513)
Q Consensus 442 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~l-~l~l~~n-~l~~~~p~ 509 (513)
.+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|.++..++.+ .+++++| .+.|..|.
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 8999999999999998 67888888999999999999998 7788888888888 8888843 46666554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=223.65 Aligned_cols=256 Identities=18% Similarity=0.178 Sum_probs=175.6
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccc
Q 041374 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKL 284 (513)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L 284 (513)
+|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++... ...+..+++|
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L 126 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS------SSWFKPLSSL 126 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC------HHHHTTCTTC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC------HhHhCCCccC
Confidence 4555555555555333334555555555555555555444445555555555555555554321 1224445555
Q ss_pred ccccccccccCCcCc-hhhhccccccceEEeccc-cceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEecc
Q 041374 285 EAFGLDTNIFGGVLP-LSIANLSSTIILFTMGLN-QIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN 362 (513)
Q Consensus 285 ~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~ 362 (513)
+.|++++|.+.+..+ ..+..++. ++.++++.| .+.+..+..+..+++|++|++++|.+.+..|.
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------- 192 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTK-LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK------------- 192 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTT-CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-------------
T ss_pred CEEECCCCCCcccCchhhhccCCC-CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-------------
Confidence 555555555554333 34455554 889999988 46666677888899999999999988865444
Q ss_pred CCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCcccc---CCCCCCEEeCCCCccCc----c
Q 041374 363 VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVG---NLKNLVQLDLSENHFSI----E 435 (513)
Q Consensus 363 ~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~----~ 435 (513)
.+..+++|++|++++|.+. .+|..++...+.+++|++++|++++..+..+. ..+.++.++++++.+.+ .
T Consensus 193 ---~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 193 ---SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ---TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred ---HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 3455688999999999986 77777777677779999999999865544332 45678888888888775 3
Q ss_pred CCccccCCCCCCEEeCCCCccccccccc-ccCCCCCCEEECCCCCCCcccc
Q 041374 436 IPVSLSACTTLEYLYMEGNSVTGSIPLA-LNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 436 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 485 (513)
+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6777889999999999999998 56655 5889999999999999987665
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=211.27 Aligned_cols=224 Identities=21% Similarity=0.217 Sum_probs=116.5
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCC
Q 041374 182 ELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGK 261 (513)
Q Consensus 182 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 261 (513)
+.++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555554 555443 35677777777777755555677777777777777777766666677777777777766
Q ss_pred CC-CCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccC
Q 041374 262 NN-LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY 340 (513)
Q Consensus 262 n~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (513)
|. +..... ..+..+++|+.|++++| .+.+..|..+..+++|++|++++
T Consensus 90 n~~l~~~~~------~~~~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 90 NAQLRSVDP------ATFHGLGRLHTLHLDRC-------------------------GLQELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp CTTCCCCCT------TTTTTCTTCCEEECTTS-------------------------CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCccccCH------HHhcCCcCCCEEECCCC-------------------------cCCEECHhHhhCCcCCCEEECCC
Confidence 65 433211 11222233333333222 22222233344555566666666
Q ss_pred CcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCC
Q 041374 341 NQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK 420 (513)
Q Consensus 341 n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~ 420 (513)
|.+.+..+. .+..+++|++|++++|+++ +..+..+..++
T Consensus 139 n~l~~~~~~----------------~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~ 177 (285)
T 1ozn_A 139 NALQALPDD----------------TFRDLGNLTHLFLHGNRIS-------------------------SVPERAFRGLH 177 (285)
T ss_dssp SCCCCCCTT----------------TTTTCTTCCEEECCSSCCC-------------------------EECTTTTTTCT
T ss_pred CcccccCHh----------------HhccCCCccEEECCCCccc-------------------------ccCHHHhcCcc
Confidence 655532221 1233355555555555554 33333344445
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 421 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+|++|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5555555555555444555555555555555555555444444555555555555555544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=214.41 Aligned_cols=207 Identities=21% Similarity=0.224 Sum_probs=124.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc-ccccCccccCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR-LHSRVPESLGQL 154 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l 154 (513)
.+++.|+++++.+.+..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|. +....|..+..+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-------CHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 3566666666666665555666666666666666666522 13355666666666666665 555445566666
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 155 RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 155 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 66666666666666666666666666666666666666 34433333566666666666666644444466666666666
Q ss_pred CccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCC
Q 041374 235 LSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
+++|.+.+..+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP------TEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------HHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCC------HHHcccCcccCEEeccCCCccC
Confidence 6666666655666666666666666666665422 1334555666666666665554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-25 Score=221.02 Aligned_cols=228 Identities=20% Similarity=0.225 Sum_probs=141.9
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|+|++|.+++. .+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|.+++
T Consensus 75 ~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCccEEECcCCcCceE-------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 5778888888877732 234677778888888888888777777777888888888888887766666677777
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCccccccccccccccCCCCCcEEE
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 258 (513)
+|++|++++|.+. .+|...+..+++|++|++++|...+.++ ..+..+++|++|++++|.+.+. | .+..+++|++|+
T Consensus 148 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELE 224 (452)
T ss_dssp TCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEE
T ss_pred CCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEE
Confidence 7777777777776 4555444466677777776643222333 3455666666666666666532 2 345555555555
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEec
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (513)
+++|.+.+ ..|..+..++. ++.+++++|++.+..+..+..+++|++|++
T Consensus 225 Ls~N~l~~------------------------------~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 225 MSGNHFPE------------------------------IRPGSFHGLSS-LKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp CTTSCCSE------------------------------ECGGGGTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCCcCcc------------------------------cCcccccCccC-CCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 55555544 44444444443 555555555555555555666666666777
Q ss_pred cCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCc
Q 041374 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT 384 (513)
Q Consensus 339 ~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~ 384 (513)
++|++++..+.. +..+++|+.|++++|.+.
T Consensus 274 ~~N~l~~~~~~~----------------~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 274 AHNNLSSLPHDL----------------FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CSSCCSCCCTTS----------------STTCTTCCEEECCSSCEE
T ss_pred CCCcCCccChHH----------------hccccCCCEEEccCCCcC
Confidence 666666332222 233456666666666554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-25 Score=219.12 Aligned_cols=205 Identities=19% Similarity=0.243 Sum_probs=134.6
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
+++++|+|++|++++.. +..|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..++
T Consensus 64 ~~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK-------VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEEC-------TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCcEEEccCCcCCeeC-------HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 67888888888877322 34677788888888888888877777788888888888888888877666777777
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCccccccccccccccCCCCCcEEE
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLN 258 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 258 (513)
+|+.|++++|.+. .++...+..+++|++|++++|...+.++ ..+.++++|++|++++|.+.. +| .+..+++|++|+
T Consensus 137 ~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 137 KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELD 213 (440)
T ss_dssp SCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEE
T ss_pred cCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEE
Confidence 7777777777777 4555444467777777777744332333 356667777777777777662 23 356666666666
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEec
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (513)
+++|.+++... ..+..+++|+.|++++|.+ .+..+..+..+++|++|++
T Consensus 214 Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l-------------------------~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 214 LSGNHLSAIRP------GSFQGLMHLQKLWMIQSQI-------------------------QVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CTTSCCCEECT------TTTTTCTTCCEEECTTCCC-------------------------CEECTTSSTTCTTCCEEEC
T ss_pred CCCCccCccCh------hhhccCccCCEEECCCCce-------------------------eEEChhhhcCCCCCCEEEC
Confidence 66666654322 2344445555555555544 4444455555666666666
Q ss_pred cCCcCcc
Q 041374 339 EYNQLTG 345 (513)
Q Consensus 339 ~~n~~~~ 345 (513)
++|++++
T Consensus 263 ~~N~l~~ 269 (440)
T 3zyj_A 263 AHNNLTL 269 (440)
T ss_dssp TTSCCCC
T ss_pred CCCCCCc
Confidence 6666653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-27 Score=225.89 Aligned_cols=268 Identities=15% Similarity=0.201 Sum_probs=164.4
Q ss_pred CCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccC-----
Q 041374 54 TKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIG----- 128 (513)
Q Consensus 54 ~~~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~----- 128 (513)
...|.....|+.+..+.......+++.+++++|.+ .+|..+... |++|++++|.+... .+|..+.
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~------~~~~~~~~~~~~ 90 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAA------RIPSRILFGALR 90 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEE------ECBHHHHHHHHH
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCC------CcCHHHHHHHHH
Confidence 34565444455554443322224566677777777 455545443 77778888877421 2344443
Q ss_pred --CCCCCCEEEeecCcccccCcccc--CCCCCCCEEEcccccCCccCcccccCC-----CCCcEEeCCCCcCcccCCccc
Q 041374 129 --NLSALQNIDIAGNRLHSRVPESL--GQLRSLSFLDISENAFSGMFHSSIFNI-----SSLELIYPLENRLEGSLPVNI 199 (513)
Q Consensus 129 --~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~lp~~~ 199 (513)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..+
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 67888888888888887777765 7788888888888888877 6666665 778888888887774444444
Q ss_pred cCCCCCCCEEEccCCccccc--Ccccc--cCCCCCCeeeCccccccc---cccccccCCCCCcEEEcCCCCCCCCCCCCc
Q 041374 200 GFSLPNLEDLSVRQNNYTGS--LPHSL--SNASNLQLLDLSLNHFSG---QVKIDFNRLPNLFRLNFGKNNLGTGAIGDL 272 (513)
Q Consensus 200 ~~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 272 (513)
. .+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+
T Consensus 170 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 245 (312)
T 1wwl_A 170 R-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG--- 245 (312)
T ss_dssp C-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC---
T ss_pred c-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc---
Confidence 4 677788888887776643 23333 677777777777777762 122334566777777777777766331
Q ss_pred hhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCc
Q 041374 273 DFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT 344 (513)
Q Consensus 273 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 344 (513)
...+..+++|+.|++++|.+. .+|..+. ..++.+++++|++++. |. +..+++|++|++++|+++
T Consensus 246 --~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 246 --APSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --CSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred --hhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 022334566666666666665 3343332 2255555555555443 33 445555555555555544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-26 Score=218.71 Aligned_cols=252 Identities=19% Similarity=0.166 Sum_probs=132.6
Q ss_pred ccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccc-ccCccccc-------CCCCCCeeeCccccccccccc
Q 041374 175 IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT-GSLPHSLS-------NASNLQLLDLSLNHFSGQVKI 246 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~ 246 (513)
++..++|+.+++++|.+ .+|..+.. .|++|++++|.++ ..+|..+. ++++|++|++++|.+.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 33445666666666666 55655441 2666666666663 34444443 566666666666666655555
Q ss_pred cc--cCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccc----cccceEEeccccce
Q 041374 247 DF--NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLS----STIILFTMGLNQIY 320 (513)
Q Consensus 247 ~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~l~~l~l~~~~~~ 320 (513)
.+ ..+++|++|++++|.+++ . |..+..+. ..++.+++++|++.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~------------------------------~-~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWAT------------------------------R-DAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSS------------------------------S-SSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred HHHHhcCCCccEEEccCCCCcc------------------------------h-hHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 44 555566666655555544 3 33333331 22556666666665
Q ss_pred ecCCccccCCCCCCEEeccCCcCccCC--CccccCCCCeEEeccCCccccCCCCCCEEecccCcCcc--cChHHHHhhhc
Q 041374 321 GTIPPEVKNLVNLNGFGLEYNQLTGPI--PHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTG--ALPPQILGILT 396 (513)
Q Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~--~~p~~~~~~~~ 396 (513)
+..|..+..+++|++|++++|++.+.. +..+ .+..+++|++|++++|++.+ .++..++...+
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISAL--------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHH--------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 555566666777777777777665431 1110 01345667777777776652 22333333333
Q ss_pred ccceEEccCCcCcccCC-ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 397 LSILLDLSGNLLTGSIP-TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 397 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
.|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 44555555555554332 23334455555555555554 4444433 4455555555555433 33 444555555555
Q ss_pred CCCCCC
Q 041374 476 SRNNLS 481 (513)
Q Consensus 476 ~~n~l~ 481 (513)
++|+++
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 555544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=198.81 Aligned_cols=219 Identities=20% Similarity=0.260 Sum_probs=182.1
Q ss_pred CCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEee
Q 041374 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIA 139 (513)
Q Consensus 61 ~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~ 139 (513)
.++|.|.|+.|.-. ..++.++++++++.. +|..+. +++++|++++|+++ .++ ..|.++++|++|+++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~ 69 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS--------SLPSKAFHRLTKLRLLYLN 69 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS--------CCCTTSSSSCTTCCEEECC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC--------eeCHHHhcCCCCCCEEECC
Confidence 47899999988532 356789999998886 454443 68999999999987 333 378899999999999
Q ss_pred cCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccccc
Q 041374 140 GNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGS 219 (513)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~ 219 (513)
+|.++...+..|..+++|++|++++|.++...+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+++.
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 99999866667789999999999999999888888899999999999999998 55555444899999999999999966
Q ss_pred CcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 220 LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 220 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
.+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++.... ..+..+++|+.|++++|.+....
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE------GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH------HHhccccCCCEEEecCCCeeCCC
Confidence 56668899999999999999998777778999999999999999886443 34567888999999999876543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-26 Score=216.12 Aligned_cols=259 Identities=19% Similarity=0.175 Sum_probs=179.2
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
.....+++.+.+...+...+..+++|++|++++|.+++ ..|..+.++++|++|++++|.+++..+ +..+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~ 81 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-------ISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-------CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-------CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC
Confidence 45666777777766666666778899999999998873 223578889999999999999887544 888999
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.+++.. ..++|+.|++++|.+.+ ++.. .+++|++|++++|++++..+..+..+++|++|+++
T Consensus 82 L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 82 LRTLDLNNNYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred CCEEECcCCcccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 999999999887543 34788889998888874 3332 35778888888888887666678888888888888
Q ss_pred cccccccccccc-cCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 237 LNHFSGQVKIDF-NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 237 ~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
+|.+.+..+..+ ..+++|++|++++|.++... ....+++|+.|++++|.+.+.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~l~~L~~L~Ls~N~l~~l------------------ 206 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVVFAKLKTLDLSSNKLAFM------------------ 206 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCCCTTCCEEECCSSCCCEE------------------
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cccccccCCEEECCCCcCCcc------------------
Confidence 888887666665 36788888888888776531 122345555555555544422
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCc-ccChHHHHhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLT-GALPPQILGI 394 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~-~~~p~~~~~~ 394 (513)
|..+..+++|++|++++|.+++ + |..+..+++|+.|++++|.+. +.+|..+...
T Consensus 207 --------~~~~~~l~~L~~L~L~~N~l~~-l----------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 207 --------GPEFQSAAGVTWISLRNNKLVL-I----------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp --------CGGGGGGTTCSEEECTTSCCCE-E----------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred --------hhhhcccCcccEEECcCCcccc-h----------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 2235556677777777777762 2 233445567777777777776 4444444333
Q ss_pred hcccceEEccC
Q 041374 395 LTLSILLDLSG 405 (513)
Q Consensus 395 ~~~l~~L~l~~ 405 (513)
. .++.+++++
T Consensus 262 ~-~L~~l~l~~ 271 (317)
T 3o53_A 262 Q-RVQTVAKQT 271 (317)
T ss_dssp H-HHHHHHHHH
T ss_pred c-cceEEECCC
Confidence 3 336666663
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-27 Score=249.05 Aligned_cols=407 Identities=14% Similarity=0.098 Sum_probs=210.2
Q ss_pred cccCCCCCCEEeCCCCCCcccCC---CCCCC-----CCcccCCCCCCCEEEeecCcccccCccccC-CCCCCCEEEcccc
Q 041374 95 YVGNLSFLRFVNLASNNLHGEIP---YEHGQ-----LPPSIGNLSALQNIDIAGNRLHSRVPESLG-QLRSLSFLDISEN 165 (513)
Q Consensus 95 ~l~~l~~L~~L~L~~n~l~~~~~---~~~~~-----l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n 165 (513)
.+.++++|++|+++++....... ...+. ++.....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45566677777776654322111 00000 001123456777777777766654444443 4667777777776
Q ss_pred -cCCcc-CcccccCCCCCcEEeCCCCcCcccCCcc---ccCCCCCCCEEEccCCc--ccc-cCcccccCCCCCCeeeCcc
Q 041374 166 -AFSGM-FHSSIFNISSLELIYPLENRLEGSLPVN---IGFSLPNLEDLSVRQNN--YTG-SLPHSLSNASNLQLLDLSL 237 (513)
Q Consensus 166 -~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~lp~~---~~~~l~~L~~L~l~~n~--l~~-~~~~~l~~l~~L~~L~L~~ 237 (513)
.++.. ++..+.++++|++|++++|.+.+..+.. +...+++|++|++++|. +.. .++..+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33322 2333346677777777777655322221 12245577777777665 211 1112223457777777777
Q ss_pred ccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccc-cccccccCCcCchhhhccccccceEEecc
Q 041374 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAF-GLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 238 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
|...+.++..+..+++|++|+++.+...-.....-..+..+.++++|+.+ .+.... .+.++..+..++. ++.+++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~-L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSR-LTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTT-CCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCC-CCEEEccC
Confidence 63222355556666777777765443110000000112234455555555 222211 1122222223333 56666665
Q ss_pred ccceecC-CccccCCCCCCEEeccCCcCccCCC----ccccCCCCeEEecc----------CC----ccc-cCCCCCCEE
Q 041374 317 NQIYGTI-PPEVKNLVNLNGFGLEYNQLTGPIP----HAIGELRNLQLRGN----------VP----SSL-GNCQNLMLL 376 (513)
Q Consensus 317 ~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~l~~~----------~~----~~l-~~~~~L~~L 376 (513)
|.+.+.. ...+..+++|++|++++| +.+... ..+.+++.|++.+. +. ..+ ..+++|++|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 5544321 122345566666666655 221111 12344555555321 10 111 236777777
Q ss_pred ecccCcCcccChHHHHhhhcccceEEcc--C----CcCccc-----CCccccCCCCCCEEeCCCCccCccCCccccC-CC
Q 041374 377 SVSNNKLTGALPPQILGILTLSILLDLS--G----NLLTGS-----IPTEVGNLKNLVQLDLSENHFSIEIPVSLSA-CT 444 (513)
Q Consensus 377 ~ls~n~l~~~~p~~~~~~~~~l~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~ 444 (513)
.++.+.+++..+..+....+.|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+.. ++
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 7777777655555555444556777777 3 344421 112245567777777766 555444444443 67
Q ss_pred CCCEEeCCCCcccccccccc-cCCCCCCEEECCCCCCCcccch-hhhcccCc-eEEccCCcccc
Q 041374 445 TLEYLYMEGNSVTGSIPLAL-NTLKSIKELDLSRNNLSGHIPE-FLENLSFN-KMNETINDFCH 505 (513)
Q Consensus 445 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~l-~l~l~~n~l~~ 505 (513)
+|++|++++|.+++..+..+ ..+++|+.|++++|++++..+. ....++.| ++++++|+++.
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 77777777777765555444 5577777777777777544443 34456777 77777777643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=220.02 Aligned_cols=235 Identities=17% Similarity=0.191 Sum_probs=165.1
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcc
Q 041374 204 PNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSK 283 (513)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~ 283 (513)
++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ...++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----------~~~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----------LVGPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----------EECTT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----------CCCCC
Confidence 356666666666665555666666666666666666665443 66666666666666655431 11244
Q ss_pred cccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccC
Q 041374 284 LEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNV 363 (513)
Q Consensus 284 L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~ 363 (513)
|+.|++++|.+.+. .+. .+++|++|++++|.+++..|..
T Consensus 101 L~~L~L~~N~l~~~-------------------------~~~---~l~~L~~L~L~~N~l~~~~~~~------------- 139 (487)
T 3oja_A 101 IETLHAANNNISRV-------------------------SCS---RGQGKKNIYLANNKITMLRDLD------------- 139 (487)
T ss_dssp CCEEECCSSCCCCE-------------------------EEC---CCSSCEEEECCSSCCCSGGGBC-------------
T ss_pred cCEEECcCCcCCCC-------------------------Ccc---ccCCCCEEECCCCCCCCCCchh-------------
Confidence 55555555444322 221 2456788888888877644433
Q ss_pred CccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCC
Q 041374 364 PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSAC 443 (513)
Q Consensus 364 ~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 443 (513)
+..+++|+.|++++|.+.+..|..+....+.|+.|++++|.+++.. ....+++|+.|++++|.+++ +|..+..+
T Consensus 140 ---~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 213 (487)
T 3oja_A 140 ---EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (487)
T ss_dssp ---GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred ---hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCC
Confidence 3445778888888888887777766655566688888888887552 23458899999999999985 55558889
Q ss_pred CCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC-cccchhhhcccCc-eEEcc
Q 041374 444 TTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS-GHIPEFLENLSFN-KMNET 499 (513)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~l-~l~l~ 499 (513)
++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|.++..++.+ .++++
T Consensus 214 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999998 47888888999999999999987 7788888888888 77775
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-27 Score=244.17 Aligned_cols=408 Identities=15% Similarity=0.095 Sum_probs=226.8
Q ss_pred CcEEEEEcCCCCCcccc---------------CccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccC-CCCCCCEEEee
Q 041374 76 RRVTKLVLRNQSIGGFL---------------SPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIG-NLSALQNIDIA 139 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~---------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~-~l~~L~~L~l~ 139 (513)
.+++.++++++...... ......+++|++|++++|.+++.. +..+. .+++|++|+++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~-------~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC-------LELIAKSFKNFKVLVLS 138 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-------HHHHHHHCTTCCEEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHH-------HHHHHHhCCCCcEEeCC
Confidence 56777777775432111 112346778888888888766432 22333 57788888888
Q ss_pred cC-ccccc-CccccCCCCCCCEEEcccccCCccCccccc----CCCCCcEEeCCCCc--CcccCCccccCCCCCCCEEEc
Q 041374 140 GN-RLHSR-VPESLGQLRSLSFLDISENAFSGMFHSSIF----NISSLELIYPLENR--LEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 140 ~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~l~~n~--l~~~lp~~~~~~l~~L~~L~l 211 (513)
+| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|+.|++++|. +.......+...+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 87 34322 333444678888888888887665444333 56688888888776 211111111124578888888
Q ss_pred cCCcccccCcccccCCCCCCeeeCcccc-------ccccccccccCCCCCcEEE-cCCCCCCCCCCCCchhhcccCCCcc
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNH-------FSGQVKIDFNRLPNLFRLN-FGKNNLGTGAIGDLDFIAHLTNCSK 283 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~-L~~n~~~~~~~~~~~~~~~l~~~~~ 283 (513)
++|...+.++..+..+++|++|++..+. +.+ .+..+.++++|+.+. +.+... -.++..+..+++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-------~~l~~~~~~~~~ 290 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-------AYLPAVYSVCSR 290 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-------GGGGGGHHHHTT
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-------hhHHHHHHhhCC
Confidence 8873222366667777788888754432 222 223455566666652 221110 011222234556
Q ss_pred cccccccccccCCcCchh-hhccccccceEEeccccceecCCccccCCCCCCEEeccC---------CcCccCCC----c
Q 041374 284 LEAFGLDTNIFGGVLPLS-IANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY---------NQLTGPIP----H 349 (513)
Q Consensus 284 L~~L~l~~n~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~---------n~~~~~~~----~ 349 (513)
|+.|++++|.+.+..... +..++. ++.+++..+-....++.....+++|++|++.+ +.+++... .
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPK-LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTT-CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCC-cCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 666666666544332222 223333 66666665511111222223356666666632 23332111 1
Q ss_pred cccCCCCeEEeccCC-----ccc-cCCCCCCEEecc--c----CcCcccCh-----HHHHhhhcccceEEccCCcCcccC
Q 041374 350 AIGELRNLQLRGNVP-----SSL-GNCQNLMLLSVS--N----NKLTGALP-----PQILGILTLSILLDLSGNLLTGSI 412 (513)
Q Consensus 350 ~~~~l~~L~l~~~~~-----~~l-~~~~~L~~L~ls--~----n~l~~~~p-----~~~~~~~~~l~~L~l~~n~l~~~~ 412 (513)
...+++.|.+.++-. ..+ ..+++|+.|+++ + +.++ ..| ..+....+.|+.|++++ .+++..
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 234455554433211 122 247788888888 3 3444 221 11233344568888877 666555
Q ss_pred CccccC-CCCCCEEeCCCCccCccCCccc-cCCCCCCEEeCCCCcccccccc-cccCCCCCCEEECCCCCCCcccchhh-
Q 041374 413 PTEVGN-LKNLVQLDLSENHFSIEIPVSL-SACTTLEYLYMEGNSVTGSIPL-ALNTLKSIKELDLSRNNLSGHIPEFL- 488 (513)
Q Consensus 413 ~~~~~~-l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~l- 488 (513)
+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++......+
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH
Confidence 555544 7888888888888876555554 5688888888888888654443 34557888888888888865444444
Q ss_pred hcccCc-eEEccCC
Q 041374 489 ENLSFN-KMNETIN 501 (513)
Q Consensus 489 ~~l~~l-~l~l~~n 501 (513)
..++.+ ...+..+
T Consensus 528 ~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 528 QKMPKLNVEVIDER 541 (594)
T ss_dssp HHCTTEEEEEECSS
T ss_pred HhCCCCEEEEecCC
Confidence 456666 3334433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=216.04 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=173.2
Q ss_pred ccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcc
Q 041374 94 PYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHS 173 (513)
Q Consensus 94 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~ 173 (513)
.....+++|++|+|++|.+++. .|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQI-------SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCC-------CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred HhcccCCCccEEEeeCCcCCCC-------CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 3334556899999999988732 24578888999999999999887555 8888999999999998875532
Q ss_pred cccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccccccccccc-CCC
Q 041374 174 SIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFN-RLP 252 (513)
Q Consensus 174 ~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~ 252 (513)
.++|+.|++++|.+.+ ++.. .+++|++|++++|.+++..|..++.+++|++|++++|.+.+..|..+. .++
T Consensus 98 ----~~~L~~L~L~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 98 ----GPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp ----CTTCCEEECCSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ----CCCcCEEECcCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 3889999999998884 3332 467899999999999987788888899999999999999887777775 789
Q ss_pred CCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCC
Q 041374 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVN 332 (513)
Q Consensus 253 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 332 (513)
+|+.|++++|.+++. .....+++|+.|++++|.+.+..+. +..++. ++.+++++|.+.+ +|..+..+++
T Consensus 170 ~L~~L~Ls~N~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~-L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 170 TLEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAG-VTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp TCCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCCCEECGG-GGGGTT-CSEEECTTSCCCE-ECTTCCCCTT
T ss_pred cccEEecCCCccccc--------cccccCCCCCEEECCCCCCCCCCHh-HcCCCC-ccEEEecCCcCcc-cchhhccCCC
Confidence 999999999988764 2233578888888888888875554 666655 7788888887775 5666777778
Q ss_pred CCEEeccCCcCc
Q 041374 333 LNGFGLEYNQLT 344 (513)
Q Consensus 333 L~~L~l~~n~~~ 344 (513)
|+.+++++|.+.
T Consensus 239 L~~L~l~~N~l~ 250 (487)
T 3oja_A 239 LEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECTTCCBC
T ss_pred CCEEEcCCCCCc
Confidence 888888888776
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=188.84 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=178.0
Q ss_pred CCCCCCCCCCC--cccceeeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCC
Q 041374 54 TKSWNNSISLC--QWTGVTCGHR---------HRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQ 122 (513)
Q Consensus 54 ~~~w~~~~~~c--~~~~v~c~~~---------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 122 (513)
...|.+..+.| .+..+.|... ...++.|+++++.+.+..+..+.++++|++|++++|.++ .
T Consensus 4 ~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~ 75 (270)
T 2o6q_A 4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--------T 75 (270)
T ss_dssp CBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS--------C
T ss_pred cCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC--------e
Confidence 44576665556 4677888642 246899999999999887789999999999999999987 3
Q ss_pred CCc-ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccC
Q 041374 123 LPP-SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGF 201 (513)
Q Consensus 123 l~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~ 201 (513)
++. .|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|...+.
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~ 154 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHcc
Confidence 443 4688999999999999999877778899999999999999999998899999999999999999999 67766555
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCC
Q 041374 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA 268 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 268 (513)
.+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+....
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 8999999999999999766667899999999999999999777777899999999999999987654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=191.41 Aligned_cols=207 Identities=21% Similarity=0.301 Sum_probs=174.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+... ..+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--------I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--------c-hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 5688999999887753 357889999999999998872 2 3688899999999999999987777789999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++..+..+.++++|++|++++|.+. .+|...+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 9999999999999888888899999999999999998 566555447899999999999999776667788999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhcccc
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 307 (513)
++|.+.+..+..+..+++|++|++++|.+.+ .+++++.++++.|.+.|.+|.+++.+..
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCccc-------------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9999998777778999999999999997654 3567888888888888888887766543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=189.08 Aligned_cols=207 Identities=21% Similarity=0.190 Sum_probs=129.9
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
.++.|++++|.+.+..+..+.++++|++|++++|.+++. .+..+.++++|++|++++|.+.+..+..|.++++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-------CHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 567777777777666665667777777777777766522 1224666677777777777776666666777777
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcc-cCCccccCCCCCCCEEEccCCcccccCcccccCCCCCC----
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEG-SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQ---- 231 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---- 231 (513)
|++|++++|.+++..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..+..+++|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 7777777777766666566677777777777776663 2455554 566777777777776655555555555554
Q ss_pred eeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 232 LLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 232 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
.|++++|.+.+..+..+. ..+|++|++++|.++.... ..+..+++|+.|++++|.+.+..
T Consensus 181 ~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT------TTTTTCCSCCEEECCSSCBCCCT
T ss_pred eeecCCCcccccCccccC-CCcccEEECCCCceeecCH------hHhcccccccEEEccCCcccccC
Confidence 666777766644443333 3367777777776654322 22455666666666666666544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=187.68 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=107.7
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.+++
T Consensus 28 ~~l~~L~ls~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEEC-------TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCcccccC-------HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 46888888888877321 22567778888888888888776666778888888888888888777777777777
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc-cCcccccCCCCCCeeeCccccccccccccccCCCCCc---
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG-SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF--- 255 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~--- 255 (513)
+|++|++++|.+.+..+..+. .+++|++|++++|.+++ .+|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred cccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 777777777777733232333 67777777777777764 2466677777777777777777655555554444443
Q ss_pred -EEEcCCCCCC
Q 041374 256 -RLNFGKNNLG 265 (513)
Q Consensus 256 -~L~L~~n~~~ 265 (513)
.|++++|.+.
T Consensus 180 l~L~ls~n~l~ 190 (276)
T 2z62_A 180 LSLDLSLNPMN 190 (276)
T ss_dssp EEEECCSSCCC
T ss_pred eeeecCCCccc
Confidence 5555555444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=182.75 Aligned_cols=192 Identities=20% Similarity=0.272 Sum_probs=162.5
Q ss_pred CCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecC
Q 041374 62 SLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGN 141 (513)
Q Consensus 62 ~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n 141 (513)
.|+.|.|..|.. ..+.++++++.+.. +|..+. +++++|++++|.+++. .+..+.++++|++|++++|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n 69 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATL-------SDATFRGLTKLTWLNLDYN 69 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECTTS
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCcc-------CHhHhcCcccCCEEECCCC
Confidence 577899999952 35578899888875 444443 6899999999999843 2346888999999999999
Q ss_pred cccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc
Q 041374 142 RLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP 221 (513)
Q Consensus 142 ~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (513)
.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++. .+|...+..+++|++|++++|++++..+
T Consensus 70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCH
Confidence 999988888999999999999999999888888999999999999999998 6776655578999999999999996666
Q ss_pred ccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCC
Q 041374 222 HSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 222 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 267 (513)
..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+...
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6788999999999999999977777888999999999999988764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-24 Score=211.52 Aligned_cols=265 Identities=17% Similarity=0.133 Sum_probs=126.2
Q ss_pred EEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCC----ccccCCCC-CCCEEEccCCcccccCcccccCC-----C
Q 041374 159 FLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLP----VNIGFSLP-NLEDLSVRQNNYTGSLPHSLSNA-----S 228 (513)
Q Consensus 159 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp----~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~ 228 (513)
++.++.|.+++.+|..+...++|++|++++|.+.+.-+ ..+. .++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45667777776666666655667777777776663222 2222 455 66666666666665545444443 6
Q ss_pred CCCeeeCccccccccccccc----cCC-CCCcEEEcCCCCCCCCCCCCchhhcccCC-CcccccccccccccCCcCchhh
Q 041374 229 NLQLLDLSLNHFSGQVKIDF----NRL-PNLFRLNFGKNNLGTGAIGDLDFIAHLTN-CSKLEAFGLDTNIFGGVLPLSI 302 (513)
Q Consensus 229 ~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~L~~n~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~ 302 (513)
+|++|++++|.+++..+..+ ... ++|++|++++|.++...... +...+.. +++|+.|++++|.+.+.....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE--FKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH--HHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH--HHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 66666666666654444332 222 55555555555554422110 1111222 1344444444444433222221
Q ss_pred hccccccceEEeccccceecCCccccCCC-CCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC-CCCCEEeccc
Q 041374 303 ANLSSTIILFTMGLNQIYGTIPPEVKNLV-NLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC-QNLMLLSVSN 380 (513)
Q Consensus 303 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~L~~L~ls~ 380 (513)
+..+...+ +|++|++++|.+++..+..+.. .+..+ ++|++|++++
T Consensus 159 ---------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~------------~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 159 ---------------------IQILAAIPANVNSLNLRGNNLASKNCAELAK------------FLASIPASVTSLDLSA 205 (362)
T ss_dssp ---------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHH------------HHHTSCTTCCEEECTT
T ss_pred ---------------------HHHHhcCCccccEeeecCCCCchhhHHHHHH------------HHHhCCCCCCEEECCC
Confidence 11222232 5666666666655433322211 12223 3566666666
Q ss_pred CcCccc----ChHHHHhhhcccceEEccCCcCcccCC----ccccCCCCCCEEeCCCCccCcc-------CCccccCCCC
Q 041374 381 NKLTGA----LPPQILGILTLSILLDLSGNLLTGSIP----TEVGNLKNLVQLDLSENHFSIE-------IPVSLSACTT 445 (513)
Q Consensus 381 n~l~~~----~p~~~~~~~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~-------~~~~~~~l~~ 445 (513)
|.+.+. ++..+....+.|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 665532 233333323344555555555553322 2234445555555555553211 1223444555
Q ss_pred CCEEeCCCCccccc
Q 041374 446 LEYLYMEGNSVTGS 459 (513)
Q Consensus 446 L~~L~L~~n~l~~~ 459 (513)
|+.|++++|++.+.
T Consensus 286 L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 286 IILVDKNGKEIHPS 299 (362)
T ss_dssp EEEECTTSCBCCGG
T ss_pred eEEEecCCCcCCCc
Confidence 55555555555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=186.43 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=164.6
Q ss_pred cccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccc
Q 041374 95 YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174 (513)
Q Consensus 95 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~ 174 (513)
....+++|+.|++++|.++ .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..
T Consensus 36 ~~~~l~~L~~L~l~~~~i~--------~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK--------SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC--------CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccccceeeeeeCCCCcc--------ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH
Confidence 3567889999999999876 333 57889999999999999987 3 47889999999999999999888888
Q ss_pred ccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCC
Q 041374 175 IFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNL 254 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 254 (513)
+.++++|++|++++|++. .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 105 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 899999999999999998 5555544478999999999999997666677889999999999999987777778889999
Q ss_pred cEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccC
Q 041374 255 FRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKN 329 (513)
Q Consensus 255 ~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 329 (513)
++|++++|.+.+... ..+..+++|+.|++++|.+.+..|. ++.+++..|.+.|.+|.+++.
T Consensus 184 ~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~~~~~--------l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNPWDCTCPG--------IRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCCTTT--------THHHHHHHHHTGGGBBCTTSC
T ss_pred CEEECCCCcCCccCH------HHHhCCcCCCEEEccCCCccccCcH--------HHHHHHHHHhCCCcccCcccc
Confidence 999999998876433 3456677888888888766644331 444444455555555554443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=182.81 Aligned_cols=157 Identities=24% Similarity=0.236 Sum_probs=106.5
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+.+++++++++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~--------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT--------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS--------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--
T ss_pred ccccCCccEEECCCCCCC--------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--
Confidence 456677777777777776 4444443 5777788888877776667777778888888888777654332
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
..+++|++|++++|.+. .+|..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..+..|..+++|+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcCCEEECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 56667777777777776 5665554 666777777777777755555666777777777777777655555566666666
Q ss_pred EEEcCCCCCCC
Q 041374 256 RLNFGKNNLGT 266 (513)
Q Consensus 256 ~L~L~~n~~~~ 266 (513)
.|++++|+++.
T Consensus 152 ~L~L~~N~l~~ 162 (290)
T 1p9a_G 152 KLSLANNNLTE 162 (290)
T ss_dssp EEECTTSCCSC
T ss_pred EEECCCCcCCc
Confidence 66666666654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-22 Score=179.70 Aligned_cols=177 Identities=24% Similarity=0.270 Sum_probs=77.8
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCC-CcccCCCCCCCCC-cccCCCCCCCEEEeec-CcccccCccccCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNN-LHGEIPYEHGQLP-PSIGNLSALQNIDIAG-NRLHSRVPESLGQ 153 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~ 153 (513)
.++.|++++|++.+..+..+.++++|++|++++|. ++ .++ ..|.++++|++|++++ |.+++..+..|..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--------QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--------EECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--------eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 34445555555444444444445555555555543 33 111 1344444555555554 4444433344444
Q ss_pred CCCCCEEEcccccCCccCcccccCCCCCc---EEeCCCC-cCcccCCccccCCCCCCC-EEEccCCcccccCcccccCCC
Q 041374 154 LRSLSFLDISENAFSGMFHSSIFNISSLE---LIYPLEN-RLEGSLPVNIGFSLPNLE-DLSVRQNNYTGSLPHSLSNAS 228 (513)
Q Consensus 154 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~lp~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~ 228 (513)
+++|++|++++|.+++ +|. +..+++|+ .|++++| .+. .+|...+..+++|+ +|++++|+++ .+|......+
T Consensus 104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~ 179 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC
T ss_pred CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC
Confidence 4555555555554443 222 44444444 4444444 444 33333222444444 4444444444 2232222224
Q ss_pred CCCeeeCcccc-ccccccccccCC-CCCcEEEcCCCCCC
Q 041374 229 NLQLLDLSLNH-FSGQVKIDFNRL-PNLFRLNFGKNNLG 265 (513)
Q Consensus 229 ~L~~L~L~~n~-~~~~~~~~~~~l-~~L~~L~L~~n~~~ 265 (513)
+|++|++++|+ +.+..+..|..+ ++|+.|++++|.++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 44444444442 443333344444 44444444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-23 Score=204.45 Aligned_cols=257 Identities=17% Similarity=0.176 Sum_probs=152.6
Q ss_pred cCcccccCCCCCCeeeCcccccccccc----ccccCCCCCcEEEcCCCCCCCCCCC---Cc-hhhcccCCCccccccccc
Q 041374 219 SLPHSLSNASNLQLLDLSLNHFSGQVK----IDFNRLPNLFRLNFGKNNLGTGAIG---DL-DFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~---~~-~~~~~l~~~~~L~~L~l~ 290 (513)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+...... .+ .....+..+++|+.|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455566677777777777777765433 3356677777777777644321110 00 112234566677777777
Q ss_pred ccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC
Q 041374 291 TNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC 370 (513)
Q Consensus 291 ~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~ 370 (513)
+|.+.+.... .+|..+..+++|++|++++|.+++..+..++. .+..+
T Consensus 103 ~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------------~l~~l 149 (386)
T 2ca6_A 103 DNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR------------ALQEL 149 (386)
T ss_dssp SCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH------------HHHHH
T ss_pred CCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH------------HHHHH
Confidence 7666642211 12333445666777777777665332222111 11222
Q ss_pred ---------CCCCEEecccCcCcc-cChH--HHHhhhcccceEEccCCcCcc-----cCCccccCCCCCCEEeCCCCccC
Q 041374 371 ---------QNLMLLSVSNNKLTG-ALPP--QILGILTLSILLDLSGNLLTG-----SIPTEVGNLKNLVQLDLSENHFS 433 (513)
Q Consensus 371 ---------~~L~~L~ls~n~l~~-~~p~--~~~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~ 433 (513)
++|++|++++|.+.. .++. ..+...+.|++|++++|+++. ..+..+..+++|++|++++|.++
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 577777777777652 3332 112233345777777777762 22335666777777777777774
Q ss_pred ----ccCCccccCCCCCCEEeCCCCccccc----ccccccC--CCCCCEEECCCCCCCc----ccchhh-hcccCc-eEE
Q 041374 434 ----IEIPVSLSACTTLEYLYMEGNSVTGS----IPLALNT--LKSIKELDLSRNNLSG----HIPEFL-ENLSFN-KMN 497 (513)
Q Consensus 434 ----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~l-~~l~~l-~l~ 497 (513)
..+|..+..+++|++|+|++|++++. ++..+.. +++|+.|++++|++++ .+|..+ .+++.| +++
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 45666677777777777777777654 4555533 7777777777777776 466666 556777 777
Q ss_pred ccCCcccccCC
Q 041374 498 ETINDFCHHKP 508 (513)
Q Consensus 498 l~~n~l~~~~p 508 (513)
+++|++++..|
T Consensus 310 l~~N~l~~~~~ 320 (386)
T 2ca6_A 310 LNGNRFSEEDD 320 (386)
T ss_dssp CTTSBSCTTSH
T ss_pred ccCCcCCcchh
Confidence 77777776654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-23 Score=202.88 Aligned_cols=211 Identities=15% Similarity=0.178 Sum_probs=160.6
Q ss_pred CCcccceeeCCCCCcEEEEEcCCCCCccccCccccCC--CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeec
Q 041374 63 LCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNL--SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG 140 (513)
Q Consensus 63 ~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 140 (513)
|.+|.++.|+. ..++.++++++.+. +..+..+ +++++|++++|.+.+..+ .+..+++|++|++++
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--------~~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--------EHFSPFRVQHMDLSN 102 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--------SCCCCBCCCEEECTT
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--------hhccCCCCCEEEccC
Confidence 45688887752 45788899988776 3445666 889999999998874432 356789999999999
Q ss_pred Cccccc-CccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCC-cCccc-CCccccCCCCCCCEEEccCC-cc
Q 041374 141 NRLHSR-VPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLEN-RLEGS-LPVNIGFSLPNLEDLSVRQN-NY 216 (513)
Q Consensus 141 n~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-lp~~~~~~l~~L~~L~l~~n-~l 216 (513)
|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++..+. .+++|++|++++| .+
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDF 181 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCc
Confidence 998765 7778889999999999999988888888888999999999998 56642 444444 6888999999998 77
Q ss_pred ccc-CcccccCCC-CCCeeeCccc--ccc-ccccccccCCCCCcEEEcCCCC-CCCCCCCCchhhcccCCCccccccccc
Q 041374 217 TGS-LPHSLSNAS-NLQLLDLSLN--HFS-GQVKIDFNRLPNLFRLNFGKNN-LGTGAIGDLDFIAHLTNCSKLEAFGLD 290 (513)
Q Consensus 217 ~~~-~~~~l~~l~-~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~l~~~~~L~~L~l~ 290 (513)
++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++. .+..+..+++|+.|+++
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND------CFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG------GGGGGGGCTTCCEEECT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH------HHHHHhCCCCCCEeeCC
Confidence 753 566677888 8999999988 444 3455666778888888888887 4442 23456667777777777
Q ss_pred ccc
Q 041374 291 TNI 293 (513)
Q Consensus 291 ~n~ 293 (513)
+|.
T Consensus 256 ~~~ 258 (336)
T 2ast_B 256 RCY 258 (336)
T ss_dssp TCT
T ss_pred CCC
Confidence 774
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-23 Score=198.61 Aligned_cols=267 Identities=16% Similarity=0.148 Sum_probs=176.2
Q ss_pred EEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc----ccccCCC-CCCeeeCccccccccccccccCC-----C
Q 041374 183 LIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP----HSLSNAS-NLQLLDLSLNHFSGQVKIDFNRL-----P 252 (513)
Q Consensus 183 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~ 252 (513)
.+.++.|.+.+.+|.... ..++|++|++++|.+++..+ +.+..++ +|++|++++|.+.+..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 356677777766655543 44557777777777775544 5566666 77777777777776655555443 6
Q ss_pred CCcEEEcCCCCCCCCCCCCchhhcccCCC-cccccccccccccCCcCchhhhccccccceEEeccccceecCCccccC-C
Q 041374 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNC-SKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKN-L 330 (513)
Q Consensus 253 ~L~~L~L~~n~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~ 330 (513)
+|++|++++|.++...... +...+..+ ++|+.|++++|.+.+..+..+.. .+.. .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~---------------------~l~~~~ 137 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ---------------------AFSNLP 137 (362)
T ss_dssp TCCEEECCSSCGGGSCHHH--HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH---------------------HHTTSC
T ss_pred CccEEECcCCcCChHHHHH--HHHHHHhCCCCccEEECcCCcCCcHHHHHHHH---------------------HHHhCC
Confidence 7777777777665432211 11223333 45666666665555444333322 1233 3
Q ss_pred CCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCC-CCCEEecccCcCcccChHHHHhh----hcccceEEccC
Q 041374 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQ-NLMLLSVSNNKLTGALPPQILGI----LTLSILLDLSG 405 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~L~~L~ls~n~l~~~~p~~~~~~----~~~l~~L~l~~ 405 (513)
++|++|++++|.+++.....+ +..+..++ +|++|++++|.+.+..+..+... ...|++|++++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDEL------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHH------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred CceeEEEccCCcCCHHHHHHH------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 589999999999886443322 12233344 89999999999987766555432 24679999999
Q ss_pred CcCccc----CCccccC-CCCCCEEeCCCCccCccCC----ccccCCCCCCEEeCCCCcccc-------cccccccCCCC
Q 041374 406 NLLTGS----IPTEVGN-LKNLVQLDLSENHFSIEIP----VSLSACTTLEYLYMEGNSVTG-------SIPLALNTLKS 469 (513)
Q Consensus 406 n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~ 469 (513)
|.+++. ++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .++..+..+++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 999863 3444444 4699999999999986544 345778999999999998443 24456778889
Q ss_pred CCEEECCCCCCCcccc
Q 041374 470 IKELDLSRNNLSGHIP 485 (513)
Q Consensus 470 L~~L~l~~n~l~~~~p 485 (513)
|+.||+++|++.+..|
T Consensus 286 L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 286 IILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEEECTTSCBCCGGGC
T ss_pred eEEEecCCCcCCCcch
Confidence 9999999999986644
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=194.09 Aligned_cols=255 Identities=16% Similarity=0.177 Sum_probs=167.7
Q ss_pred CCCEEEccCCcccccCcccccCC--CCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCc
Q 041374 205 NLEDLSVRQNNYTGSLPHSLSNA--SNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCS 282 (513)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~ 282 (513)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+... ..+..+..++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~-----~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS-----TLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH-----HHHHHHTTBC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH-----HHHHHHhhCC
Confidence 4677888877765 3445555 7788888888877765444 45677777777777765431 1334455566
Q ss_pred ccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCC-cCccCCCccccCCCCeEEec
Q 041374 283 KLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN-QLTGPIPHAIGELRNLQLRG 361 (513)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~l~~ 361 (513)
+|+.|++++|.+.+ ..+..+..+++|++|++++| .+++..
T Consensus 119 ~L~~L~L~~~~l~~-------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~-------------- 159 (336)
T 2ast_B 119 KLQNLSLEGLRLSD-------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFA-------------- 159 (336)
T ss_dssp CCSEEECTTCBCCH-------------------------HHHHHHTTCTTCSEEECTTCBSCCHHH--------------
T ss_pred CCCEEeCcCcccCH-------------------------HHHHHHhcCCCCCEEECCCCCCCCHHH--------------
Confidence 66666666655443 33444556778888888887 455320
Q ss_pred cCCccccCCCCCCEEecccC-cCccc-ChHHHHhhhcccceEEccCC--cCc-ccCCccccCCCCCCEEeCCCCc-cCcc
Q 041374 362 NVPSSLGNCQNLMLLSVSNN-KLTGA-LPPQILGILTLSILLDLSGN--LLT-GSIPTEVGNLKNLVQLDLSENH-FSIE 435 (513)
Q Consensus 362 ~~~~~l~~~~~L~~L~ls~n-~l~~~-~p~~~~~~~~~l~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~ 435 (513)
++..+..+++|++|++++| .+++. ++..+...+..|++|++++| .++ +.++..+..+++|++|++++|. +++.
T Consensus 160 -l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 160 -LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp -HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred -HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 1222445678888888888 77654 34444443315688888888 454 3456666778888888888888 6667
Q ss_pred CCccccCCCCCCEEeCCCCc-ccccccccccCCCCCCEEECCCCCCCcccchhhhccc-Cc-eEEccCCcccccCCCCCc
Q 041374 436 IPVSLSACTTLEYLYMEGNS-VTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS-FN-KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 436 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~l-~l~l~~n~l~~~~p~~~~ 512 (513)
.+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.. .+..+. .+ .+++++|+++|..|....
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 77788888889999998884 44333346777888999999888 4432 333332 24 667788888888887553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-21 Score=178.21 Aligned_cols=203 Identities=22% Similarity=0.184 Sum_probs=131.6
Q ss_pred ccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccc
Q 041374 248 FNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEV 327 (513)
Q Consensus 248 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 327 (513)
+.+++++++++++++.++..+. .+ .+.++.|++++|.+.+..+..+..++. ++.++++.|.+++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-------~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-------DL--PKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-------CC--CTTCCEEECTTSCCSEEEGGGGTTCTT-CCEEECTTSCCCEEECC--
T ss_pred ccccCCccEEECCCCCCCcCCC-------CC--CCCCCEEEcCCCcCCccCHHHhhcCCC-CCEEECCCCccCcccCC--
Confidence 5677888888888887765332 11 146777777777777666666666655 77777777776654332
Q ss_pred cCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCc
Q 041374 328 KNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNL 407 (513)
Q Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~ 407 (513)
..+++|++|++++|.+. . +|..+..+++|++|++++|+++ .+|+..+.....|++|++++|+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~----------------l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-S----------------LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp SCCTTCCEEECCSSCCS-S----------------CCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSC
T ss_pred CCCCcCCEEECCCCcCC-c----------------CchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCC
Confidence 56667777777777666 2 2233445567777777777776 3443333444445777777777
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 408 LTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|+++ .+|..+..++.|+.+++++|++.
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 76555555666777777777777776444445566777777777777776 56666666667777777777764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=182.08 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=90.3
Q ss_pred CccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChH---HHHhhhcccce
Q 041374 324 PPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPP---QILGILTLSIL 400 (513)
Q Consensus 324 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~---~~~~~~~~l~~ 400 (513)
+..+..+++|++|++++|++.+.... ..+..+..+++|++|++++|+++ .++. .++.....|++
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGL------------MAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHH------------HTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS
T ss_pred HHHhccCCCCCEEECCCCCCccchhh------------hHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE
Confidence 34455566667777777665431000 00111234567888888888775 3333 23444455688
Q ss_pred EEccCCcCcccCCccccCC---CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 401 LDLSGNLLTGSIPTEVGNL---KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 401 L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
|++++|++++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 8888888876666666555 68888888888887 6676654 6888888888888743 33 56677888888888
Q ss_pred CCCCc
Q 041374 478 NNLSG 482 (513)
Q Consensus 478 n~l~~ 482 (513)
|++++
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 87763
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-23 Score=201.59 Aligned_cols=171 Identities=18% Similarity=0.216 Sum_probs=97.5
Q ss_pred cCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCc---ccccCcccc-------CCCCCCCEEE
Q 041374 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNR---LHSRVPESL-------GQLRSLSFLD 161 (513)
Q Consensus 92 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~---l~~~~p~~l-------~~l~~L~~L~ 161 (513)
++..+..+++|++|+|++|.+++..+. .++..+..+++|++|++++|. +.+.+|..+ ..+++|++|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAAR---WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHH---HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHH---HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 445566677777777777777643221 133346667777777777753 333444443 5677777777
Q ss_pred cccccCCc----cCcccccCCCCCcEEeCCCCcCcccCCccccC---CC---------CCCCEEEccCCccc-ccCc---
Q 041374 162 ISENAFSG----MFHSSIFNISSLELIYPLENRLEGSLPVNIGF---SL---------PNLEDLSVRQNNYT-GSLP--- 221 (513)
Q Consensus 162 Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~---~l---------~~L~~L~l~~n~l~-~~~~--- 221 (513)
+++|.++. .++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|+++ +.++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 77777765 34556666677777777777665322222210 11 56666666666665 2233
Q ss_pred ccccCCCCCCeeeCccccccc-----cccccccCCCCCcEEEcCCCCCC
Q 041374 222 HSLSNASNLQLLDLSLNHFSG-----QVKIDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 222 ~~l~~l~~L~~L~L~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~~~ 265 (513)
..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 244455666666666666552 12224555556666666655543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=169.97 Aligned_cols=181 Identities=20% Similarity=0.267 Sum_probs=158.6
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.+++
T Consensus 14 ~~~~~l~~~~~~l~--------~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD--------SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCCCS--------SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCeEEecCCCCcc--------ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 35678999999887 5565554 5899999999999998888899999999999999999999899999999
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
+|++|++++|.+. .+|...+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 84 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 84 ELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 9999999999999 666655558999999999999999666666889999999999999999777778999999999999
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 297 (513)
++|.+..... ..+..+++|+.|++++|.+...
T Consensus 163 ~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 STNQLQSVPH------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCSCCCT------TTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCccCH------HHHhCCCCCCEEEeeCCceeCC
Confidence 9999987543 3567788999999999998876
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-21 Score=183.04 Aligned_cols=226 Identities=19% Similarity=0.174 Sum_probs=171.2
Q ss_pred CcEEEEEcCCCCCccccCc---cccCCCCCCEEeCCCCCCcccCCCCCCCCCccc--CCCCCCCEEEeecCcccccCc--
Q 041374 76 RRVTKLVLRNQSIGGFLSP---YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSI--GNLSALQNIDIAGNRLHSRVP-- 148 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~--~~l~~L~~L~l~~n~l~~~~p-- 148 (513)
..++.+.+.+..+...... ....+++|++|++++|.+++..| ..+ ..+++|++|++++|.+.+..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMP-------PLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCC-------CCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchh-------hhhhhccCCCCCEEEeecccccchhhhh
Confidence 3577888888777543111 12345679999999999885544 344 788999999999999987554
Q ss_pred --cccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCccc--CC-ccccCCCCCCCEEEccCCcccccCcc-
Q 041374 149 --ESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGS--LP-VNIGFSLPNLEDLSVRQNNYTGSLPH- 222 (513)
Q Consensus 149 --~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--lp-~~~~~~l~~L~~L~l~~n~l~~~~~~- 222 (513)
..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. ++ ......+++|++|++++|+++ .++.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 215 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV 215 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH
Confidence 3455789999999999999988888999999999999999987642 22 222236889999999999987 3333
Q ss_pred ---cccCCCCCCeeeCccccccccccccccCC---CCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCC
Q 041374 223 ---SLSNASNLQLLDLSLNHFSGQVKIDFNRL---PNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGG 296 (513)
Q Consensus 223 ---~l~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 296 (513)
.+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++..+ ..+ .++|+.|++++|.+.+
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-------~~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-------KGL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-------SCC--CSCCSCEECCSCCCCS
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh-------hhh--cCCCCEEECCCCcCCC
Confidence 24678999999999999988777777766 69999999999988532 222 2789999999999987
Q ss_pred cCchhhhccccccceEEecccccee
Q 041374 297 VLPLSIANLSSTIILFTMGLNQIYG 321 (513)
Q Consensus 297 ~~~~~~~~~~~~l~~l~l~~~~~~~ 321 (513)
. |. +..++. ++.+++++|.++.
T Consensus 287 ~-~~-~~~l~~-L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 A-PQ-PDELPE-VDNLTLDGNPFLV 308 (310)
T ss_dssp C-CC-TTSCCC-CSCEECSSTTTSC
T ss_pred C-ch-hhhCCC-ccEEECcCCCCCC
Confidence 5 22 345554 8999999998763
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=165.95 Aligned_cols=177 Identities=22% Similarity=0.271 Sum_probs=81.7
Q ss_pred CCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEee
Q 041374 60 SISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIA 139 (513)
Q Consensus 60 ~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~ 139 (513)
..+.|.|.++.|.... +.. +|..+ .++|++|++++|++++. .+..+.++++|++|+++
T Consensus 3 ~~C~C~~~~v~c~~~~------------l~~-~p~~~--~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~ 60 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQG------------RTS-VPTGI--PAQTTYLDLETNSLKSL-------PNGVFDELTSLTQLYLG 60 (208)
T ss_dssp TTCEEETTEEECCSSC------------CSS-CCSCC--CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECC
T ss_pred CCCEECCCEEEecCCC------------ccC-CCCCC--CCCCcEEEcCCCccCcC-------ChhhhcccccCcEEECC
Confidence 3467899999996421 111 11111 23445555555544411 11123444555555555
Q ss_pred cCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccccc
Q 041374 140 GNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGS 219 (513)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~ 219 (513)
+|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+++.
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCcccee
Confidence 55554433333444555555555555554444444444555555555555554 33333222445555555555555433
Q ss_pred CcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCC
Q 041374 220 LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 220 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
.+..+..+++|++|++++|.+. +.+++|+.|+++.|.+++
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 3333444555555555555433 223344444444444443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=168.60 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=96.2
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCc-ccCCCCCCCEEEeecCc-ccccCccccCCCCCCCEEEccc-ccCCccCcccccC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPP-SIGNLSALQNIDIAGNR-LHSRVPESLGQLRSLSFLDISE-NAFSGMFHSSIFN 177 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~ 177 (513)
+|++|++++|++++ +|. .|.++++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|.+
T Consensus 32 ~l~~L~l~~n~l~~--------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRT--------IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESCCCSE--------ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred cccEEEEeCCcceE--------ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 78888888887772 232 56777888888888886 7665556777788888888887 7777666666777
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCC---EEEccCC-cccccCcccccCCCCCC-eeeCccccccccccccccCCC
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLE---DLSVRQN-NYTGSLPHSLSNASNLQ-LLDLSLNHFSGQVKIDFNRLP 252 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~~~~l~ 252 (513)
+++|++|++++|.+. .+|. +. .+++|+ +|++++| .+++..+..+..+++|+ +|++++|++....+..+.. +
T Consensus 104 l~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp CTTCCEEEEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred CCCCCEEeCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 777777777777666 3554 22 555555 6666666 66544444456666666 6666666665322222222 4
Q ss_pred CCcEEEcCCC
Q 041374 253 NLFRLNFGKN 262 (513)
Q Consensus 253 ~L~~L~L~~n 262 (513)
+|++|++++|
T Consensus 180 ~L~~L~L~~n 189 (239)
T 2xwt_C 180 KLDAVYLNKN 189 (239)
T ss_dssp EEEEEECTTC
T ss_pred CCCEEEcCCC
Confidence 5555555555
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=174.00 Aligned_cols=167 Identities=25% Similarity=0.408 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
+++.|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ ++ .+..+++
T Consensus 42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~--------~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 108 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT--------DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQS 108 (308)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC--------CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC--------CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence 455555555544432 1 3445555555555555544 2232 4455555555555555544 22 3445555
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.+++.. .+..+++|+.|++++|.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD 181 (308)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence 555555555554331 1444445555555554444 2222 22 34444444444444442 222 4444444444444
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCC
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 265 (513)
+|.+.+..+ +..+++|++|++++|.+.
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccC
Confidence 444443221 344444444444444443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=172.19 Aligned_cols=195 Identities=20% Similarity=0.295 Sum_probs=166.1
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
..++++|++|++++|.++ .++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++. ..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~--------~l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT--------TIE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAI 103 (308)
T ss_dssp HHHHHTCCEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGG
T ss_pred HHHcCCcCEEEeeCCCcc--------Cch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhh
Confidence 456889999999999887 455 5888999999999999998744 4 99999999999999999875 368
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
..+++|+.|++++|.+. .++. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 104 ~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp TTCTTCCEEECTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred cCCCCCCEEECCCCCCC-Cchh-hc-CCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 89999999999999998 4554 44 899999999999999854 43 8899999999999999986443 88999999
Q ss_pred EEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecccccee
Q 041374 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG 321 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 321 (513)
.|++++|.+++.. .+..+++|+.|++++|.+.+..+ +..++. ++.+++++|.+++
T Consensus 177 ~L~l~~n~l~~~~--------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~-L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 177 TLKADDNKISDIS--------PLASLPNLIEVHLKNNQISDVSP--LANTSN-LFIVTLTNQTITN 231 (308)
T ss_dssp EEECCSSCCCCCG--------GGGGCTTCCEEECTTSCCCBCGG--GTTCTT-CCEEEEEEEEEEC
T ss_pred EEECCCCccCcCh--------hhcCCCCCCEEEccCCccCcccc--ccCCCC-CCEEEccCCeeec
Confidence 9999999987632 26788999999999999987764 666666 9999999999875
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=161.01 Aligned_cols=181 Identities=21% Similarity=0.248 Sum_probs=153.7
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCc
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLE 182 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 182 (513)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+
T Consensus 10 ~~v~c~~~~l~--------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRT--------SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79 (208)
T ss_dssp TEEECCSSCCS--------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEecCCCcc--------CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcC
Confidence 46777777776 455444 35899999999999987777789999999999999999988778889999999
Q ss_pred EEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCC
Q 041374 183 LIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262 (513)
Q Consensus 183 ~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 262 (513)
+|++++|.+. .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 80 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9999999999 666665558999999999999999766667889999999999999999777777899999999999999
Q ss_pred CCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhcccc
Q 041374 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSS 307 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 307 (513)
.+.. .+++|+.|+++.|.+.+.+|.+++.++.
T Consensus 159 ~~~~-------------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWDC-------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBCC-------------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Ceec-------------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7653 4568899999999999988887776554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=187.65 Aligned_cols=208 Identities=24% Similarity=0.303 Sum_probs=168.8
Q ss_pred CCCCCCCCC-----cccce-eeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCC
Q 041374 56 SWNNSISLC-----QWTGV-TCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGN 129 (513)
Q Consensus 56 ~w~~~~~~c-----~~~~v-~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~ 129 (513)
+|..+..+| .|.++ .|.. .+++.|+++++.+.+ +|..+ +++|++|++++|.++ .+| ..
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~--------~ip---~~ 98 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI--------SLP---EL 98 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--------CCC---CC
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--------ccc---cc
Confidence 454444566 68888 6753 579999999999988 66655 389999999999998 455 44
Q ss_pred CCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEE
Q 041374 130 LSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDL 209 (513)
Q Consensus 130 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L 209 (513)
+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEE
Confidence 7899999999999998 776 665 99999999999998 454 6899999999999998 4776 46899999
Q ss_pred EccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCC-------cEEEcCCCCCCCCCCCCchhhcccCCCc
Q 041374 210 SVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNL-------FRLNFGKNNLGTGAIGDLDFIAHLTNCS 282 (513)
Q Consensus 210 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-------~~L~L~~n~~~~~~~~~~~~~~~l~~~~ 282 (513)
++++|++++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++.. +..+..++
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-------p~~l~~l~ 230 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHI-------PENILSLD 230 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCC-------CGGGGGSC
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceec-------CHHHhcCC
Confidence 999999995 777 65 89999999999998 5555 554 67 9999999998853 34566689
Q ss_pred ccccccccccccCCcCchhhhcccc
Q 041374 283 KLEAFGLDTNIFGGVLPLSIANLSS 307 (513)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~~~ 307 (513)
+|+.|++++|.+.+..|..+..+..
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 9999999999999998888877543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=170.96 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCE-EEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLED-LSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
++++|++++|+|+.+.+..|.++++|++|++++|++.+.+|...+.+++++++ +.+..|+++...|..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444443333334444444444444444433444444434555443 44445566644455566666666666
Q ss_pred CccccccccccccccCCCCCcEEEcC
Q 041374 235 LSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 235 L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
+++|++....+..+....++..+++.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred ccccccccCCchhhcccchhhhhhhc
Confidence 66666654444444444445555543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=171.67 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCCcccceeeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCC
Q 041374 62 SLCQWTGVTCGHRH---------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSA 132 (513)
Q Consensus 62 ~~c~~~~v~c~~~~---------~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~ 132 (513)
+.|.+..|.|.... .+++.|+|++|++....+..|.++++|++|+|++|.+.+.+|. ..|.++++
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~------~~f~~L~~ 80 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------DVFSNLPK 80 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT------TSBCSCTT
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh------hHhhcchh
Confidence 55788888885321 2344555555555443334445555555555555554432221 13444444
Q ss_pred CCE-EEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCC-CcCcccCCccccCCC-CCCCEE
Q 041374 133 LQN-IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLE-NRLEGSLPVNIGFSL-PNLEDL 209 (513)
Q Consensus 133 L~~-L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~lp~~~~~~l-~~L~~L 209 (513)
|++ +.+.+|++....|..|..+++|++|++++|.++...+..+....++..+++.+ +.+. .++...+..+ ..+++|
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVIL 159 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhh
Confidence 433 33334444444444455555555555555555444444444444444444433 2232 3333222222 234445
Q ss_pred EccCCcccccCcccccCCCCCCeeeCcc-ccccccccccccCCCCCcEEEcCCCCCCC
Q 041374 210 SVRQNNYTGSLPHSLSNASNLQLLDLSL-NHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 210 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
++++|+++ .++.......+|+++++.+ |.++...+..|..+++|++|++++|+++.
T Consensus 160 ~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred cccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 55555544 2333333334444444443 33332222334444444444444444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-19 Score=158.34 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=90.2
Q ss_pred CCCCCCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCE
Q 041374 56 SWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQN 135 (513)
Q Consensus 56 ~w~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~ 135 (513)
.|+.+.+.|.|.+|.|... ++. .+|..+. ++|++|++++|.+++. .|..|.++++|++
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~ 68 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKL-------EPGVFDSLINLKE 68 (229)
T ss_dssp CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCC-------CTTTTTTCTTCCE
T ss_pred ccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCcc-------CHHHhhCccCCcE
Confidence 4555778999999999642 222 2232222 6677777777777632 2345666777777
Q ss_pred EEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc
Q 041374 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN 215 (513)
Q Consensus 136 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~ 215 (513)
|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++. .+|..+. .+++|++|++++|+
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQ 146 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSC
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCc
Confidence 777777776655555667777777777777766554444555555555555555544 4444443 44444444444444
Q ss_pred ccccCcccccCCCCCCeeeCccccc
Q 041374 216 YTGSLPHSLSNASNLQLLDLSLNHF 240 (513)
Q Consensus 216 l~~~~~~~l~~l~~L~~L~L~~n~~ 240 (513)
+++..+..+..+++|+.|++++|.+
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 4432223334444444444444443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=154.89 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEc
Q 041374 132 ALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSV 211 (513)
Q Consensus 132 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l 211 (513)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence 3444444444444433334444444444444444444444444444444444555444444 455554445666666666
Q ss_pred cCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCC
Q 041374 212 RQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 266 (513)
++|++++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 6666665556666667777777777777766555566667777777777776544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-18 Score=173.81 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=36.8
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCC-------CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTL-------EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
++|+.|++++|.++ .+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 45555555555554 3444 322 44 66666666665 4555555566666666666666666666555543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=154.33 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=88.3
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
.+++|++++|.+++..+...+...+.|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45666666666664444444444445566777777666555556666677777777777766555555666677777777
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCcccccC
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFCHHK 507 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~~~~ 507 (513)
++|++++..|..|..+++|+.|++++|++++..|..+..++.| ++++++|++++..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 7777766666666666777777777777766666666666666 7777777666543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-18 Score=150.91 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=84.8
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCE
Q 041374 80 KLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSF 159 (513)
Q Consensus 80 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 159 (513)
.++++++.+.. +|..+ .+.+++|++++|.+++..| +..|.++++|++|++++|.+++..+..|..+++|++
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEA------TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECC------CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCc------hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 34455555554 34333 2345677777777763322 123566777777777777777666666777777777
Q ss_pred EEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccc
Q 041374 160 LDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNH 239 (513)
Q Consensus 160 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 239 (513)
|++++|.+++..+..|.++++|++|++++|.+.+..|..+. .+++|++|++++|++++..|..+..+++|++|++++|.
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77777777666555555555555555555555532233332 44555555555555554444444444444444444444
Q ss_pred cc
Q 041374 240 FS 241 (513)
Q Consensus 240 ~~ 241 (513)
+.
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 43
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=159.81 Aligned_cols=150 Identities=26% Similarity=0.348 Sum_probs=70.2
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L 206 (513)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+ ++ .+. .+++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L 136 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQL 136 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCC
Confidence 4444445555555554444222 44445555555555544432 124444455555555554442 22 222 34555
Q ss_pred CEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
++|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.. ..+..+++|+.
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--------~~l~~l~~L~~ 204 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--------RALAGLKNLDV 204 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--------GGGTTCTTCSE
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--------hhhccCCCCCE
Confidence 5555555555432 344555555555555555543322 45555555555555554431 12444455555
Q ss_pred ccccccccC
Q 041374 287 FGLDTNIFG 295 (513)
Q Consensus 287 L~l~~n~~~ 295 (513)
|++++|.+.
T Consensus 205 L~l~~n~i~ 213 (291)
T 1h6t_A 205 LELFSQECL 213 (291)
T ss_dssp EEEEEEEEE
T ss_pred EECcCCccc
Confidence 555555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-18 Score=158.46 Aligned_cols=171 Identities=24% Similarity=0.367 Sum_probs=147.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.+. +.+..+++|++|++++|.++ .++. +.++++|++|++++|.+.+ ++ .+..++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~--------~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~ 112 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT--------DIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLK 112 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC--------CCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC--------CCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCC
Confidence 5689999999998765 35889999999999999998 4444 8899999999999999987 44 489999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+ + ..+. .+++|++|++++|++++..+ +..+++|++|++
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhc-cCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 999999999999875 578899999999999999984 4 3444 78999999999999996544 889999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCC
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGA 268 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 268 (513)
++|.+++. + .+..+++|+.|++++|.+...+
T Consensus 186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 186 SKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 99999864 3 4899999999999999887643
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=163.96 Aligned_cols=175 Identities=21% Similarity=0.258 Sum_probs=128.3
Q ss_pred EEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccC-CCCCCCEEEeecCcccccCccccCCCCCCCE
Q 041374 81 LVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIG-NLSALQNIDIAGNRLHSRVPESLGQLRSLSF 159 (513)
Q Consensus 81 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 159 (513)
++++++++.. +|..+. +.+++|+|++|.+++.. +..+. ++++|++|++++|.+++..+..|..+++|++
T Consensus 23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~-------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLR-------AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEEC-------TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccC-------hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 3444455544 343332 45788888888887322 22455 7888888999888888877778888888999
Q ss_pred EEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccc---cCCCCCCeeeCc
Q 041374 160 LDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSL---SNASNLQLLDLS 236 (513)
Q Consensus 160 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~ 236 (513)
|++++|.++...+..|.++++|+.|++++|.+.+..|..+. .+++|++|++++|++++..+..+ ..+++|+.|+++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 99988888888777888888899999988888844344444 78889999999998884333333 568889999999
Q ss_pred cccccccccccccCCCC--CcEEEcCCCCCCC
Q 041374 237 LNHFSGQVKIDFNRLPN--LFRLNFGKNNLGT 266 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~--L~~L~L~~n~~~~ 266 (513)
+|++....+..+..++. ++.|++++|.+..
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99888666566777776 4788999888765
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=149.21 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=69.2
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
+++.|++++|.+. .++...+.....|++|++++|++++..|..+..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 4555555555554 233222233333455555555555444555555555555555555555333333455555555555
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCCccc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
++|++++..|..|..+++|+.|++++|++++..+..+..++.| ++++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555555555555555555555555555444455555555 5555555543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=149.13 Aligned_cols=153 Identities=18% Similarity=0.298 Sum_probs=79.9
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.++++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--------DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCS--------CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCcc--------ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhc
Confidence 34455555555555554 333 35555556666665554432 22455555666666666655554455555
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCc-ccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNN-YTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
.+++|++|++++|.+.+..|..+. .+++|++|++++|. ++ .+| .+..+++|++|++++|.+.+. + .+..+++|+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~ 184 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLN 184 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCC
T ss_pred CCCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCC
Confidence 555555555555555543444443 45556666666555 33 333 455556666666666655532 2 455555566
Q ss_pred EEEcCCCCCC
Q 041374 256 RLNFGKNNLG 265 (513)
Q Consensus 256 ~L~L~~n~~~ 265 (513)
+|++++|++.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 6665555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=170.15 Aligned_cols=170 Identities=24% Similarity=0.357 Sum_probs=116.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+... +.+..+++|++|+|++|.+. .++. +..+++|+.|+|++|.+.+ +| .+..++
T Consensus 43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~--------~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~ 109 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT--------DIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLK 109 (605)
T ss_dssp TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCC--------CCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCT
T ss_pred CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCC--------CChh-hccCCCCCEEECcCCCCCC-Ch-hhccCC
Confidence 4567777777776653 24677777777777777776 3333 6677777777777777765 33 577777
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+ + ..+. .+++|++|+|++|.+++..| +..+++|+.|+|
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 777777777777653 346677777777777777763 3 3333 67777777777777775444 667777777777
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCC
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 267 (513)
++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 183 SKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77777643 3467777777777777766553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=159.73 Aligned_cols=178 Identities=22% Similarity=0.211 Sum_probs=145.8
Q ss_pred CEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccC-CCCCCCEEEcccccCCccCcccccCCCCC
Q 041374 103 RFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLG-QLRSLSFLDISENAFSGMFHSSIFNISSL 181 (513)
Q Consensus 103 ~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 181 (513)
+.++++++.++ .+|..+. +.+++|++++|.+++..+..+. .+++|++|++++|.+++..+..|.++++|
T Consensus 21 ~~l~c~~~~l~--------~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLP--------NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCS--------SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcC--------ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC
Confidence 57899999887 5565543 4689999999999998777787 89999999999999999988999999999
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccc---cCCCCCcEEE
Q 041374 182 ELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDF---NRLPNLFRLN 258 (513)
Q Consensus 182 ~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~ 258 (513)
++|++++|++. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..+ ..+++|+.|+
T Consensus 91 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 91 RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 99999999998 5666555589999999999999997778889999999999999999986555555 5789999999
Q ss_pred cCCCCCCCCCCCCchhhcccCCCcc--cccccccccccCCc
Q 041374 259 FGKNNLGTGAIGDLDFIAHLTNCSK--LEAFGLDTNIFGGV 297 (513)
Q Consensus 259 L~~n~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~n~~~~~ 297 (513)
+++|.+..... ..+..++. ++.|++++|.+...
T Consensus 170 L~~N~l~~l~~------~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 170 LSSNKLKKLPL------TDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSSCCCCCCH------HHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCCCccCH------HHhhhccHhhcceEEecCCCccCC
Confidence 99999886432 23344444 47788888877643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=146.16 Aligned_cols=151 Identities=20% Similarity=0.269 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++.+.. ++ .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--------~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--------N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--------C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--------c-chhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 468999999999984 44 6899999999999999665 2 34788999999999999999987888999999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCc-CcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeee
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENR-LEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLD 234 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 234 (513)
+|++|++++|.+++..+..+..+++|++|++++|. +. .+| .+. .+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 99999999999998888999999999999999998 65 666 444 79999999999999985 44 688999999999
Q ss_pred Cccccccc
Q 041374 235 LSLNHFSG 242 (513)
Q Consensus 235 L~~n~~~~ 242 (513)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 99998863
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-17 Score=146.26 Aligned_cols=156 Identities=24% Similarity=0.224 Sum_probs=108.5
Q ss_pred cceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccCh
Q 041374 309 IILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 309 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
...++.+.+.+. .+|..+ .++|++|++++|.+.+..+.. +..+++|++|++++|++. .+|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~----------------~~~l~~L~~L~L~~N~l~-~i~ 80 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGV----------------FDSLINLKELYLGSNQLG-ALP 80 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTT----------------TTTCTTCCEEECCSSCCC-CCC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHH----------------hhCccCCcEEECCCCCCC-CcC
Confidence 455666555543 666644 377777777777777544433 344567888888888775 566
Q ss_pred HHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC
Q 041374 389 PQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468 (513)
Q Consensus 389 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 468 (513)
...+.....|++|++++|++++..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 555555555688888888877655556677788888888888777 6777777778888888888887755556677777
Q ss_pred CCCEEECCCCCCCcccc
Q 041374 469 SIKELDLSRNNLSGHIP 485 (513)
Q Consensus 469 ~L~~L~l~~n~l~~~~p 485 (513)
+|+.|++++|++.+..+
T Consensus 160 ~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECTTSCBCTTBG
T ss_pred CCCEEEeeCCCccCCcc
Confidence 88888888887765443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-18 Score=181.11 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHhhCC-CCCCCCCCCCC-CCCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCC
Q 041374 32 SNETDRLAYLAIKSQLQ-DPLGVTKSWNN-SISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLAS 109 (513)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 109 (513)
..+.++.+++++..... ........|.. ....+.|.++.+.. .+++.++|.++.+... +..+ ++.++|+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~ 200 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQAL-----LQHKKLSQ 200 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhH-----hhcCccCc
Confidence 45677788888887764 22333345633 33456787777754 6799999988887763 3322 33344444
Q ss_pred CCCcccCC--CCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCC
Q 041374 110 NNLHGEIP--YEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPL 187 (513)
Q Consensus 110 n~l~~~~~--~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 187 (513)
+.+.+... ..+...++.+..++.|++|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..+.++++|++|+++
T Consensus 201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred ccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 44432110 0001234456667777777777777763 5555556777777777777776 556666666667777777
Q ss_pred CCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccc
Q 041374 188 ENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDF 248 (513)
Q Consensus 188 ~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 248 (513)
+|.+. .+|..+. .+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+.+..|..+
T Consensus 279 ~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 279 HNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666 6666655 5666666666666665 556666666666666666666665555444
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=152.49 Aligned_cols=167 Identities=23% Similarity=0.295 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCC
Q 041374 78 VTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSL 157 (513)
Q Consensus 78 v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 157 (513)
++.++++++.+.+.. .+.++++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ--------SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc--------cch-HHhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence 344455666665433 4667788888888888776 444 57778888888888888877433 7788888
Q ss_pred CEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCcc
Q 041374 158 SFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSL 237 (513)
Q Consensus 158 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 237 (513)
++|++++|.+++..+ +.. ++|+.|++++|++. .++ .+. .+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus 88 ~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~-~~~-~l~-~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 88 EELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELR-DTD-SLI-HLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCS-BSG-GGT-TCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTT
T ss_pred CEEECCCCccCCcCc--ccc-CcccEEEccCCccC-CCh-hhc-CcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCC
Confidence 888888888776432 222 77777777777777 343 333 67778888888877774 33 577777778888887
Q ss_pred ccccccccccccCCCCCcEEEcCCCCCCCC
Q 041374 238 NHFSGQVKIDFNRLPNLFRLNFGKNNLGTG 267 (513)
Q Consensus 238 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 267 (513)
|.+.+. ..+..+++|+.|++++|.+...
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 777754 5567777777777777766553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-17 Score=165.42 Aligned_cols=174 Identities=23% Similarity=0.317 Sum_probs=123.3
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+..+++|++|++++|.+. .++ .+..+++|+.|+|++|.+.+..| +..+++|++|+|++|.+++. ..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l 105 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK--------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSL 105 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC--------CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTS
T ss_pred hhcCCCCCEEECcCCCCC--------CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhh
Confidence 456677777788777766 333 46777788888888877776443 77777888888888877653 357
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCc
Q 041374 176 FNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 255 (513)
..+++|+.|++++|.+. .++ .+. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..+ +..+++|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp TTCTTCCEEECTTSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccCCCCCEEEecCCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 77778888888888777 343 333 677788888888877743 457777788888888887775544 77777888
Q ss_pred EEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCc
Q 041374 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297 (513)
Q Consensus 256 ~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 297 (513)
.|+|++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 179 ~L~Ls~N~i~~l--------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 179 NLYLSKNHISDL--------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCBC--------GGGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCCCCCC--------hHHccCCCCCEEEccCCcCcCC
Confidence 888887777652 3466777778888887776654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=140.16 Aligned_cols=133 Identities=21% Similarity=0.272 Sum_probs=97.1
Q ss_pred CEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCC
Q 041374 334 NGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP 413 (513)
Q Consensus 334 ~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~ 413 (513)
++++++++.++ .+|. .+. +++++|++++|.+.+..+...+.....|++|++++|++++..|
T Consensus 11 ~~l~~s~~~l~-~ip~----------------~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR----------------DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSCCS-SCCS----------------CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCCcC-cCcc----------------CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH
Confidence 77777777775 4433 222 3788888888887744443344455556888888888887777
Q ss_pred ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 414 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 778888888888888888887777777788888888888888887777778888888888888888776554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-17 Score=151.48 Aligned_cols=171 Identities=23% Similarity=0.229 Sum_probs=141.6
Q ss_pred CCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
.+.+++.++++++.++ .++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..
T Consensus 17 ~l~~l~~l~l~~~~i~--------~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT--------DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKD 83 (263)
T ss_dssp HHHHHHHHHHTCSCTT--------SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HHHHHHHHHhcCCCcc--------ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hcc
Confidence 4556777788888877 334 57788999999999999986 55 68899999999999999987765 889
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 257 (513)
+++|+.|++++|++. .+|... . ++|++|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|+.|
T Consensus 84 l~~L~~L~L~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L 155 (263)
T 1xeu_A 84 LTKLEELSVNRNRLK-NLNGIP--S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL 155 (263)
T ss_dssp CSSCCEEECCSSCCS-CCTTCC--C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred CCCCCEEECCCCccC-CcCccc--c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence 999999999999998 566533 2 899999999999985 44 588999999999999999864 3 68889999999
Q ss_pred EcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCc
Q 041374 258 NFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGV 297 (513)
Q Consensus 258 ~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 297 (513)
++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 156 ~L~~N~i~~~--------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--------TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--------HHhccCCCCCEEeCCCCcccCC
Confidence 9999998763 4567788888888888887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-19 Score=179.49 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=61.1
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSR 477 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 477 (513)
++.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 3555666665553 343 555556666666666655 555556666666666666666653 44 555566666666666
Q ss_pred CCCCccc-chhhhcccCc-eEEccCCcccccCC
Q 041374 478 NNLSGHI-PEFLENLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 478 n~l~~~~-p~~l~~l~~l-~l~l~~n~l~~~~p 508 (513)
|++++.+ |..+..++.| .+++++|++++.+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6665544 5555666666 66666666655544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-17 Score=171.73 Aligned_cols=142 Identities=29% Similarity=0.359 Sum_probs=100.5
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCC
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 445 (513)
.+..++.|+.|+|++|.+. .+|..++... .|++|++++|.++ .+|..+..+++|++|+|++|.+. .+|..|+.+++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 3455567777777777776 6666666433 3477777777777 67777777778888888888777 67777777788
Q ss_pred CCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc--eEEccCCcccccCCCCCc
Q 041374 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN--KMNETINDFCHHKPKVFA 512 (513)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l--~l~l~~n~l~~~~p~~~~ 512 (513)
|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+... .+++++|.++|.+|..+.
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 888888888776 667777777888888888888877777777655433 567777777777776553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-19 Score=179.00 Aligned_cols=84 Identities=25% Similarity=0.287 Sum_probs=48.8
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccc-cccccCCCCCCEEECCC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSI-PLALNTLKSIKELDLSR 477 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~ 477 (513)
+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55555555555 445555556666666666666653 44 5566666666666666666444 56666666666666666
Q ss_pred CCCCcccc
Q 041374 478 NNLSGHIP 485 (513)
Q Consensus 478 n~l~~~~p 485 (513)
|++++.+|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 66654433
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=133.31 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=40.6
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCC
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISS 180 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 180 (513)
++++|++++|.+++..+. ..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++
T Consensus 30 ~l~~L~l~~n~i~~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD------GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCSCCCCSBCCS------CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECCCCcCCccCCc------cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 555555555555421110 12445555555555555555544555555555555555555555444443443444
Q ss_pred CcEEeCCCCcCc
Q 041374 181 LELIYPLENRLE 192 (513)
Q Consensus 181 L~~L~l~~n~l~ 192 (513)
|++|++++|++.
T Consensus 104 L~~L~L~~N~l~ 115 (192)
T 1w8a_A 104 LKTLNLYDNQIS 115 (192)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCcCC
Confidence 444443333333
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=130.97 Aligned_cols=137 Identities=19% Similarity=0.156 Sum_probs=104.0
Q ss_pred CCCCEEecccCcCc-ccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 371 QNLMLLSVSNNKLT-GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 371 ~~L~~L~ls~n~l~-~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
++|+.|++++|.+. +.+|..+.. .+.|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 57778888888776 566655433 34458888888887754 667788888888888888886677777778888888
Q ss_pred eCCCCccccc-ccccccCCCCCCEEECCCCCCCcccc---hhhhcccCc-eEEccCCcccccCCCCC
Q 041374 450 YMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIP---EFLENLSFN-KMNETINDFCHHKPKVF 511 (513)
Q Consensus 450 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~l-~l~l~~n~l~~~~p~~~ 511 (513)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..++.| ++++++|.+. ++|.+-
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 8888888753 22678888888889998888886555 478888888 8888888876 556543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=150.29 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=77.7
Q ss_pred CCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCC-EEeCCCCccCccCCccccCCCCCCE
Q 041374 370 CQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLV-QLDLSENHFSIEIPVSLSACTTLEY 448 (513)
Q Consensus 370 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~ 448 (513)
|++|+.+++++|+++ .+|...|.....|+.+++.+| +.......|.++++|+ .+++.+ .+....+.+|.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 567777777777766 666666666666677777776 6555566778888888 888887 666556678888888888
Q ss_pred EeCCCCcccccccccccCCCCCCEEEC
Q 041374 449 LYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 449 L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
+++++|.++...+..|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888888666778888888888764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=131.23 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=89.2
Q ss_pred CCCCCCEEeCCCCCCc-ccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 98 NLSFLRFVNLASNNLH-GEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
..++|++|++++|.++ +. +|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~-------i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGK-------IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp CTTSCSEEECCSCBCBTTB-------CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CcccCCEEECCCCCCChhh-------HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 3477888888888876 33 344567778888888888888764 6677888888888888888776666666
Q ss_pred CCCCCcEEeCCCCcCcccCC--ccccCCCCCCCEEEccCCcccccCc---ccccCCCCCCeeeCcccccc
Q 041374 177 NISSLELIYPLENRLEGSLP--VNIGFSLPNLEDLSVRQNNYTGSLP---HSLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp--~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~~~ 241 (513)
++++|++|++++|.+. .+| ..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 93 ~l~~L~~L~Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HCTTCCEEECBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hCCCCCEEeccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6777777777777666 333 2333 56666666666666663322 24556666666666666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=129.44 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=69.8
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++|++|++++|++. .++...+.....|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 56667777777665 34444334444456667776666644444556666677777777666654445556666677777
Q ss_pred CCCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
+++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77666664444445666666677777666665544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=130.82 Aligned_cols=109 Identities=24% Similarity=0.327 Sum_probs=71.3
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++|++|++++|.+. .+|..+. ....|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 46777777777765 5664333 333447777777777655556666777777777777777655556666777777777
Q ss_pred CCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
|++|++++..+..|..+++|+.|++++|++.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777776444445666777777777777664
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=128.18 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCCCCEEeCCCCCCc-ccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 99 LSFLRFVNLASNNLH-GEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 99 l~~L~~L~L~~n~l~-~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
.++|++|++++|.++ +. +|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~-------~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK-------LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTB-------CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChhH-------HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 355666666666665 22 233455566666666666666553 45566666666666666666545555544
Q ss_pred CCCCcEEeCCCCcCccc-CCccccCCCCCCCEEEccCCcccccCc---ccccCCCCCCeeeC
Q 041374 178 ISSLELIYPLENRLEGS-LPVNIGFSLPNLEDLSVRQNNYTGSLP---HSLSNASNLQLLDL 235 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~-lp~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L 235 (513)
+++|++|++++|.+.+. .+..+. .+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCCEEECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55555555555555421 112222 44444444444444443222 23444444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=126.44 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNIS 179 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 179 (513)
++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.+++
T Consensus 31 ~~l~~L~L~~n~i~--------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFT--------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCSSCCC--------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred CCCCEEECCCCcCc--------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC
Confidence 45666666666665 4455566666666666666666665555566666666666666666655554555555
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNY 216 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 216 (513)
+|+.|++++|.+. .+|...+..+++|++|++++|.+
T Consensus 103 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 103 SLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence 5555555444444 33333222344444444444433
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=125.90 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=89.3
Q ss_pred CCCCEEecccCcCc-ccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEE
Q 041374 371 QNLMLLSVSNNKLT-GALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYL 449 (513)
Q Consensus 371 ~~L~~L~ls~n~l~-~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 449 (513)
++|+.|++++|.+. +.+|..+.. .+.+++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 455543322 33446777777766643 566778888888888888886677777778888888
Q ss_pred eCCCCccccc-ccccccCCCCCCEEECCCCCCCcccc---hhhhcccCc-eEEcc
Q 041374 450 YMEGNSVTGS-IPLALNTLKSIKELDLSRNNLSGHIP---EFLENLSFN-KMNET 499 (513)
Q Consensus 450 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~l-~l~l~ 499 (513)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..++.| .+|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 34778888888888888888876655 467778888 77765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=123.69 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=75.9
Q ss_pred CCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeec
Q 041374 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG 140 (513)
Q Consensus 61 ~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 140 (513)
.+.|.|.++.|.. +++.. +|..+ .++|++|++++|++++. .+..+.++++|++|++++
T Consensus 4 ~C~C~~~~l~~~~------------~~l~~-~p~~~--~~~l~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~ 61 (177)
T 2o6r_A 4 RCSCSGTEIRCNS------------KGLTS-VPTGI--PSSATRLELESNKLQSL-------PHGVFDKLTQLTKLSLSQ 61 (177)
T ss_dssp TCEEETTEEECCS------------SCCSS-CCTTC--CTTCSEEECCSSCCCCC-------CTTTTTTCTTCSEEECCS
T ss_pred CCEeCCCEEEecC------------CCCcc-CCCCC--CCCCcEEEeCCCcccEe-------CHHHhcCcccccEEECCC
Confidence 3557777777642 23332 22222 25677777777776621 122456667777777777
Q ss_pred CcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccc
Q 041374 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTG 218 (513)
Q Consensus 141 n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~ 218 (513)
|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .+|...+..+++|++|++++|.+.+
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 62 NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 7776655555666677777777777666555555555555555555555555 3444333344555555555555443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=125.14 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCC-CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNL-SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~ 174 (513)
+..+++|++|++++|+++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~--------~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP--------VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSCCC--------SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred cCCcCCceEEEeeCCCCc--------hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch
Confidence 455667777777777766 3332 3333 3777777777777663 45667777777777777776554444
Q ss_pred ccCCCCCcEEeCCCCcCcccCCc--cccCCCCCCCEEEccCCcccccCccc----ccCCCCCCeeeCcccccc
Q 041374 175 IFNISSLELIYPLENRLEGSLPV--NIGFSLPNLEDLSVRQNNYTGSLPHS----LSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 175 ~~~l~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~ 241 (513)
+..+++|++|++++|.+. .+|. .+. .+++|++|++++|.++ .+|.. +..+++|+.|++++|...
T Consensus 84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCCEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCCCCCEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 566666666666666664 4554 333 5666666666666665 34442 556666666666666543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=124.63 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=105.7
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+++|+.|++++|.+. .+|. +....+.+++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 345678889999999887 4543 455554669999999999864 578889999999999999985544555889999
Q ss_pred CEEeCCCCcccccccc--cccCCCCCCEEECCCCCCCcccchh----hhcccCc-eEEccCCccc
Q 041374 447 EYLYMEGNSVTGSIPL--ALNTLKSIKELDLSRNNLSGHIPEF----LENLSFN-KMNETINDFC 504 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~l-~l~l~~n~l~ 504 (513)
++|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..++.| .+|++.|.+.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999996 5565 7888999999999999998 45654 8889999 9999998653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=136.66 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=94.2
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCC-EE
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE-YL 449 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L 449 (513)
.+++.+.+.++-.. .....+......|+.+++++|+++......|.++++|+.+++.+| +....+.+|.++++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 45556666554221 222223333566799999999888666678889999999999988 7656667889999999 99
Q ss_pred eCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEE
Q 041374 450 YMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMN 497 (513)
Q Consensus 450 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~ 497 (513)
++.+ .++...+.+|..+++|+.+++++|++....+.+|.+++.| .++
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 9988 7776677889999999999999999987777789988888 665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=115.64 Aligned_cols=110 Identities=24% Similarity=0.251 Sum_probs=91.3
Q ss_pred CCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeC
Q 041374 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYM 451 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 451 (513)
..+.+++++|.++ .+|..+ ...+++|++++|++++..|..+..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4578999999887 677654 355689999999999777888889999999999999998666667788999999999
Q ss_pred CCCcccccccccccCCCCCCEEECCCCCCCcccc
Q 041374 452 EGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIP 485 (513)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 485 (513)
++|++++..+..|..+++|+.|++++|++....+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999986666678889999999999999875543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-12 Score=122.14 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=32.6
Q ss_pred ccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCC-CCCEEECCCCC
Q 041374 414 TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK-SIKELDLSRNN 479 (513)
Q Consensus 414 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 479 (513)
..|.++++|+.+++..+ +......+|.++ +|+.+++++|.+.......|..++ .++.|.+..+.
T Consensus 317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 34445555555555433 333334455555 566666666555544444454443 45555555444
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-16 Score=139.60 Aligned_cols=155 Identities=24% Similarity=0.301 Sum_probs=92.3
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
.....++.++++.+.+.|.+|. +..+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~-l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPP-IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTT-CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCc-HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3445566666666666665543 13555567777777777777777766 55 6667777777777777776 3344455
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCc-ccccCCCCCCeeeCcccccccccccc--------
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKID-------- 247 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~-------- 247 (513)
.+++|+.|++++|.+. .+| .+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..
T Consensus 91 ~~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 91 VADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 5556666666666665 244 233 45666666666666653211 24566666666666666665443331
Q ss_pred --ccCCCCCcEEE
Q 041374 248 --FNRLPNLFRLN 258 (513)
Q Consensus 248 --~~~l~~L~~L~ 258 (513)
+..+++|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 45555555554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-11 Score=118.89 Aligned_cols=119 Identities=15% Similarity=0.098 Sum_probs=69.4
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+..++.+...... ++...+.....|+.+.+.++ +.......|.++++|+.+++.++ +......+|.+|.+|
T Consensus 272 F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 3445566666555432 23333444444566666544 44344556667777777777644 543445677777777
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN 494 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l 494 (513)
+.+++..+ ++.....+|..+++|+.+++.++ +. .+..+|.+++.|
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 77777665 55455566777777777777644 22 234455555554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-13 Score=113.28 Aligned_cols=107 Identities=25% Similarity=0.231 Sum_probs=89.2
Q ss_pred CCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 373 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
-+.++++++.+. .+|..+ ...+++|++++|++++..|..+..+++|++|++++|.+.+..+..|..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 368999999886 777655 3566999999999997778888999999999999999986555567889999999999
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCcc
Q 041374 453 GNSVTGSIPLALNTLKSIKELDLSRNNLSGH 483 (513)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 483 (513)
+|++++..+..|..+++|+.|++++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999866555688899999999999998754
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-16 Score=136.54 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=118.6
Q ss_pred EEEEEcCCCCCccccCc------cccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCcccc
Q 041374 78 VTKLVLRNQSIGGFLSP------YVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESL 151 (513)
Q Consensus 78 v~~L~l~~~~~~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l 151 (513)
++.++++.+.+.+..+. .+..+++|++|++++|.++ .+| .+.++++|++|++++|.+.. +|..+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~--------~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~ 89 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--------KIS-SLSGMENLRILSLGRNLIKK-IENLD 89 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES--------CCC-CHHHHTTCCEEEEEEEEECS-CSSHH
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc--------ccc-ccccCCCCCEEECCCCCccc-ccchh
Confidence 33344444444444443 8889999999999999988 456 78889999999999999985 77777
Q ss_pred CCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCc--cccCCCCCCCEEEccCCcccccCcc-------
Q 041374 152 GQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPV--NIGFSLPNLEDLSVRQNNYTGSLPH------- 222 (513)
Q Consensus 152 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~l~~~~~~------- 222 (513)
..+++|++|++++|.+++. | .+..+++|++|++++|.+. .++. .+. .+++|++|++++|.+.+..|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKIT-NWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECC-CHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCC-chhHHHHHh-cCCCCCEEEecCCccccccccccchHHH
Confidence 7789999999999999874 4 6888999999999999998 4443 344 799999999999999866554
Q ss_pred ---cccCCCCCCeeeCcccccc
Q 041374 223 ---SLSNASNLQLLDLSLNHFS 241 (513)
Q Consensus 223 ---~l~~l~~L~~L~L~~n~~~ 241 (513)
.+..+++|+.|| ++.+.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHhCCCcEEEC--CcccC
Confidence 278899999997 66654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=110.17 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=39.9
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|++. .+|...+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEE
Confidence 34445555555554444444555555555555555554443333444444444444444444 33333222445555555
Q ss_pred ccCCccc
Q 041374 211 VRQNNYT 217 (513)
Q Consensus 211 l~~n~l~ 217 (513)
+++|.++
T Consensus 109 L~~N~~~ 115 (170)
T 3g39_A 109 LLNNPWD 115 (170)
T ss_dssp CCSSCBC
T ss_pred eCCCCCC
Confidence 5555544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=109.64 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=41.4
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLS 210 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~ 210 (513)
++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|++++|++. .+|...+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEE
Confidence 45555555555555544555555555555555555555443333444444444444444444 33333222445555555
Q ss_pred ccCCccc
Q 041374 211 VRQNNYT 217 (513)
Q Consensus 211 l~~n~l~ 217 (513)
+++|.+.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 5555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-11 Score=117.42 Aligned_cols=324 Identities=10% Similarity=0.055 Sum_probs=170.3
Q ss_pred CccccCCCCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC
Q 041374 93 SPYVGNLSFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171 (513)
Q Consensus 93 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 171 (513)
..+|.++.+|+.+.|..+ ++ .+. .+|.+|++|+.+++.++ ++......|.++.+|+.+.+..+ +....
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~--------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VR--------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CC--------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred HHHhhCCCCceEEEeCCC-cc--------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec
Confidence 445666777777776532 32 222 25667777777777543 44444455666666666555433 33333
Q ss_pred cccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCC
Q 041374 172 HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRL 251 (513)
Q Consensus 172 ~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 251 (513)
..+|.++..++........ .+....+..+++|+.+.+.++... .....|.++.+|+.+++..+ +.......|.++
T Consensus 133 ~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp TTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred ceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 4444444333322222111 222233335556666666543322 22334555666666665544 332334445555
Q ss_pred CCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCC
Q 041374 252 PNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLV 331 (513)
Q Consensus 252 ~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 331 (513)
..|+.+.+..+..... .....+..|+.+.+.. . ....-...+..+.
T Consensus 208 ~~L~~i~~~~~~~~i~--------~~~~~~~~l~~i~ip~-------------------------~-~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 208 ILLENMEFPNSLYYLG--------DFALSKTGVKNIIIPD-------------------------S-FTELGKSVFYGCT 253 (394)
T ss_dssp TTCCBCCCCTTCCEEC--------TTTTTTCCCCEEEECT-------------------------T-CCEECSSTTTTCS
T ss_pred cccceeecCCCceEee--------hhhcccCCCceEEECC-------------------------C-ceecccccccccc
Confidence 5555554433321100 0011122233322211 1 1111122344455
Q ss_pred CCCEEeccCCcCccCCCccccCC---CCeEEecc-C-CccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCC
Q 041374 332 NLNGFGLEYNQLTGPIPHAIGEL---RNLQLRGN-V-PSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGN 406 (513)
Q Consensus 332 ~L~~L~l~~n~~~~~~~~~~~~l---~~L~l~~~-~-~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n 406 (513)
.++.+.+..+... .....+... +.+..... + ...+..+.+|+.+.+.++ +. .++...|.....|+.+++.++
T Consensus 254 ~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 254 DLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp SCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred cceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc
Confidence 5555555544222 111222222 22211111 1 123567888999988765 43 566666666666799998754
Q ss_pred cCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEE
Q 041374 407 LLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKEL 473 (513)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 473 (513)
++......|.++++|+.+++..+ +......+|.+|++|+.+++..+ +. .+...|..+++|+.+
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66455678889999999999877 66556778999999999999765 33 345678888888764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-13 Score=131.73 Aligned_cols=118 Identities=20% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCCEEecccCcCcccChHHHHhh----hcccceEEccCCcCccc----CCccccCCCCCCEEeCCCCccCccC----Ccc
Q 041374 372 NLMLLSVSNNKLTGALPPQILGI----LTLSILLDLSGNLLTGS----IPTEVGNLKNLVQLDLSENHFSIEI----PVS 439 (513)
Q Consensus 372 ~L~~L~ls~n~l~~~~p~~~~~~----~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~ 439 (513)
+|+.|++++|.+.+.....+... .+.|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 45566666665543322222221 23346666666655432 2223344555666666666554322 334
Q ss_pred ccCCCCCCEEeCCCCccccc----ccccccCCCCCCEEECCCCCCCcccchhhh
Q 041374 440 LSACTTLEYLYMEGNSVTGS----IPLALNTLKSIKELDLSRNNLSGHIPEFLE 489 (513)
Q Consensus 440 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 489 (513)
+...++|++|+|++|.+++. +...+...++|++|||++|+|++.....+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 44555666666666665532 223333445566666666666544444443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=114.15 Aligned_cols=198 Identities=10% Similarity=0.117 Sum_probs=101.3
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
+|.++ +|+.+++..+ ++......|.+ .+|+.+.+.. .++.+....|.++++|+.+++.+|.+. .++...+ ...+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF-~~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF-VYAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT-TTCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE-eecc
Confidence 34443 4666665544 44444444544 3466666654 455555555666666666666666655 5555555 3456
Q ss_pred CCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccc
Q 041374 206 LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLE 285 (513)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~ 285 (513)
|+.+.+..+ ++..-...|.++++|+.+++..+ +.......|.. .+|+.+.+.. .+..... .++..|++|+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~------~aF~~c~~L~ 274 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIAS------RAFYYCPELA 274 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECT------TTTTTCTTCC
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEECh------hHhhCCCCCC
Confidence 666666533 33333345556666666666543 33333444444 4566665532 2222111 3345555666
Q ss_pred cccccccccC-----CcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCC
Q 041374 286 AFGLDTNIFG-----GVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN 341 (513)
Q Consensus 286 ~L~l~~n~~~-----~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 341 (513)
.+.+.++.+. ......|..+.+ ++.+.+. +.+...-...|..+.+|+.+.+..+
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~-L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPK-LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTT-CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred EEEeCCccccCCcccEECHHHhhCCcc-CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 6655554433 233334444444 5555555 2344444455666677777776543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-13 Score=133.20 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred CCCCEEeccCCcCccCCCccccCCCCeEEeccCCcccc-CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCc
Q 041374 331 VNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLG-NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT 409 (513)
Q Consensus 331 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~ 409 (513)
+.|+++++++|.++......+.. .+. .+++|++|++++|.+.+.....+......+++|++++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAA------------VLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHH------------HHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHH------------HHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 45667777777666332221111 111 22567777777777654444444444445577777777776
Q ss_pred ccCCccc-----cCCCCCCEEeCCCCccCcc----CCccccCCCCCCEEeCCCCccccc----ccccccCCCCCCEEECC
Q 041374 410 GSIPTEV-----GNLKNLVQLDLSENHFSIE----IPVSLSACTTLEYLYMEGNSVTGS----IPLALNTLKSIKELDLS 476 (513)
Q Consensus 410 ~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~ 476 (513)
+.....+ ...++|++|++++|.+++. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|+
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 4433333 2356777777777776542 333445667777777777777643 24455666677777777
Q ss_pred CCCCCcc----cchhhhcccCc-eEEccCCccccc
Q 041374 477 RNNLSGH----IPEFLENLSFN-KMNETINDFCHH 506 (513)
Q Consensus 477 ~n~l~~~----~p~~l~~l~~l-~l~l~~n~l~~~ 506 (513)
+|.|++. ++..+...+.| ++||++|+|+..
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 7777643 33344455667 777777777643
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-09 Score=105.19 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=48.7
Q ss_pred cCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 041374 368 GNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE 447 (513)
Q Consensus 368 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 447 (513)
..|.+|+.+.+.++.. .+....+.....|+.+.+.. .+.......|.++++|+.+++..+ ++.....+|.+|.+|+
T Consensus 262 ~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 3344444444443321 22223333333334444432 233233334555555555555543 3323344555556666
Q ss_pred EEeCCCCcccccccccccCCCCCCEEECCCCC
Q 041374 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNN 479 (513)
Q Consensus 448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 479 (513)
.+.|..+ ++.....+|.++++|+.+++.++.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 6655433 333334455556666666655543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=5e-11 Score=114.86 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=73.7
Q ss_pred EEecccC-cCcccChHHHHhhhcccceEEccC-CcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCC
Q 041374 375 LLSVSNN-KLTGALPPQILGILTLSILLDLSG-NLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452 (513)
Q Consensus 375 ~L~ls~n-~l~~~~p~~~~~~~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 452 (513)
.++.+++ .++ .+|. + .....|++|++++ |.+++..+..+..+++|+.|+|++|.+.+..|..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577776 666 5776 3 3333457888875 77776666677778888888888888877777777788888888888
Q ss_pred CCcccccccccccCCCCCCEEECCCCCCCc
Q 041374 453 GNSVTGSIPLALNTLKSIKELDLSRNNLSG 482 (513)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 482 (513)
+|++++..+..+..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888755555555554 8888888887763
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-11 Score=114.27 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCcccceeeCCCCCcEEEEEcCCC-CCccccCccccCCCCCCEEeCCC-CCCcccCCCCCCCCCcccCCCCCCCEEEeec
Q 041374 63 LCQWTGVTCGHRHRRVTKLVLRNQ-SIGGFLSPYVGNLSFLRFVNLAS-NNLHGEIPYEHGQLPPSIGNLSALQNIDIAG 140 (513)
Q Consensus 63 ~c~~~~v~c~~~~~~v~~L~l~~~-~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 140 (513)
.|.|..+.|. ++ ++.+ +|. +..+++|++|+|++ |.+++. .+..|.++++|++|+|++
T Consensus 7 ~C~~~~v~~~------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-------~~~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHL-------ELRDLRGLGELRNLTIVK 65 (347)
T ss_dssp CSSSSCEECC------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEE-------CGGGSCSCCCCSEEECCS
T ss_pred cccCCEEEcC------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCc-------ChhHhccccCCCEEECCC
Confidence 4777666664 22 3443 444 66666666666664 655521 123455566666666666
Q ss_pred CcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcC
Q 041374 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRL 191 (513)
Q Consensus 141 n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 191 (513)
|.+++..|..|.++++|++|+|++|.+++..+..+..++ |+.|++.+|.+
T Consensus 66 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 666665555556666666666666665544333333332 44444444443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-08 Score=95.93 Aligned_cols=310 Identities=8% Similarity=0.091 Sum_probs=153.2
Q ss_pred ccccCccccCCCC-CCCEEEcccccCCccCcccccCCCCCcEEeCCCCc---CcccCCccccCCCCCCCEEEccCCcccc
Q 041374 143 LHSRVPESLGQLR-SLSFLDISENAFSGMFHSSIFNISSLELIYPLENR---LEGSLPVNIGFSLPNLEDLSVRQNNYTG 218 (513)
Q Consensus 143 l~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~---l~~~lp~~~~~~l~~L~~L~l~~n~l~~ 218 (513)
++..-...|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..+. ++ .+....+..+.+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence 3444445677774 5999999764 777778888899999998887653 43 455555556677777666544 332
Q ss_pred cCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcC
Q 041374 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVL 298 (513)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 298 (513)
.....+..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...... ++. +..|+.+.+..+.
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~------aF~-~~~l~~i~ip~~~----- 193 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEER------AFT-GTALTQIHIPAKV----- 193 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTT------TTT-TCCCSEEEECTTC-----
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccc------ccc-ccceeEEEECCcc-----
Confidence 33445677778888887643 33344556777777777777543 2211111 111 1234444332211
Q ss_pred chhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCC--CCeEEeccCCccccCCCCCCEE
Q 041374 299 PLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGEL--RNLQLRGNVPSSLGNCQNLMLL 376 (513)
Q Consensus 299 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l--~~L~l~~~~~~~l~~~~~L~~L 376 (513)
...-...+..+..++............--..+... ....+ ........+..+
T Consensus 194 ---------------------~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 247 (394)
T 4gt6_A 194 ---------------------TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----IRYPSQREDPAF 247 (394)
T ss_dssp ---------------------CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----EECCTTCCCSEE
T ss_pred ---------------------cccccchhhhccccceecccccccccccceeecccccccccc-----cccccccccceE
Confidence 01111233344444444443332221000000000 00000 000111223333
Q ss_pred ecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcc
Q 041374 377 SVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSV 456 (513)
Q Consensus 377 ~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 456 (513)
.+... +. .+....|.....|+.+.+.++... .....+.++++|+.+.+.. .+......+|.+|.+|+.++|.++ +
T Consensus 248 ~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 248 KIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp ECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EcCCc-ce-EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c
Confidence 33221 11 222233333444455555544322 3344555666666666642 333233445666666666666543 4
Q ss_pred cccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCC
Q 041374 457 TGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n 501 (513)
+.....+|..+.+|+.+.+..+ ++.....+|.++..| .+++.+|
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 4334455666666666666433 443334466666666 6666655
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.7e-07 Score=88.74 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=69.0
Q ss_pred ccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCC
Q 041374 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTL 446 (513)
Q Consensus 367 l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 446 (513)
+..+..|+.+.+..+ ++ .+....+.....++.+.+..+ +.......+..+++|+.+.+.++.+......+|.+|.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 344566666666554 22 344444444444566666443 332334456667777777777766664455667777777
Q ss_pred CEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 447 EYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
+.+.|..+ ++.....+|.++++|+.+.+..+ ++.....+|.++.
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77777543 44344556777777777777543 4433344555443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.1e-10 Score=105.92 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=103.0
Q ss_pred CcEEEEEcCCCCCcc-c-------cCccccCCCCCCEEeCCCCCCccc-CC-CCCCCCCcccCCCCCCCEEEeecCcccc
Q 041374 76 RRVTKLVLRNQSIGG-F-------LSPYVGNLSFLRFVNLASNNLHGE-IP-YEHGQLPPSIGNLSALQNIDIAGNRLHS 145 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~-~-------~~~~l~~l~~L~~L~L~~n~l~~~-~~-~~~~~l~~~~~~l~~L~~L~l~~n~l~~ 145 (513)
.+|+.|.+......+ . +..++.++++|+.|.+.+...... +. ...+.+...+..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 457777777655442 1 234456789999999876533210 00 0001344556778899999998873222
Q ss_pred cCccccCCCCCCCEEEcccccCCccCccccc--CCCCCcEEeCCC--CcCccc-----CCccc-cCCCCCCCEEEccCCc
Q 041374 146 RVPESLGQLRSLSFLDISENAFSGMFHSSIF--NISSLELIYPLE--NRLEGS-----LPVNI-GFSLPNLEDLSVRQNN 215 (513)
Q Consensus 146 ~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----lp~~~-~~~l~~L~~L~l~~n~ 215 (513)
++. +. +++|++|++..|.++......+. .+++|+.|+++. +...+. +...+ ...+++|++|++.+|.
T Consensus 187 -l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 333 33 78899999988887654444443 678888887743 111111 11111 1135667777776666
Q ss_pred ccccCccccc---CCCCCCeeeCcccccccccc----ccccCCCCCcEEEcCCCCCCC
Q 041374 216 YTGSLPHSLS---NASNLQLLDLSLNHFSGQVK----IDFNRLPNLFRLNFGKNNLGT 266 (513)
Q Consensus 216 l~~~~~~~l~---~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n~~~~ 266 (513)
+....+..+. .+++|++|+++.|.+.+..+ ..+..+++|+.|+++.|.++.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 6533222222 35566666666666654322 222334555555555555443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=98.16 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=98.2
Q ss_pred ccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHh-hhcccceEEc
Q 041374 325 PEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILG-ILTLSILLDL 403 (513)
Q Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~l~~L~l 403 (513)
..+..+++|++|++++|.-. . ++. + .+++|+.|++..|.+.......+.. ..+.|+.|++
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~----------------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-S----------------IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-B----------------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-e----------------ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 34556778888888776211 0 111 1 1467888888877765443333331 2345588877
Q ss_pred cC--CcCccc-----CCccc--cCCCCCCEEeCCCCccCccCCccc---cCCCCCCEEeCCCCccccc----ccccccCC
Q 041374 404 SG--NLLTGS-----IPTEV--GNLKNLVQLDLSENHFSIEIPVSL---SACTTLEYLYMEGNSVTGS----IPLALNTL 467 (513)
Q Consensus 404 ~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l 467 (513)
+. +...+. +...+ ..+|+|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+
T Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 53 111111 11122 257899999999998875443333 3578999999999998864 34445667
Q ss_pred CCCCEEECCCCCCCcccchhhhc-ccCc-eEEccCCc
Q 041374 468 KSIKELDLSRNNLSGHIPEFLEN-LSFN-KMNETIND 502 (513)
Q Consensus 468 ~~L~~L~l~~n~l~~~~p~~l~~-l~~l-~l~l~~n~ 502 (513)
++|+.|++++|.++...-..+.. + . .++++.|+
T Consensus 307 ~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 307 KHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 89999999999887654444443 2 3 88888876
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-06 Score=83.96 Aligned_cols=302 Identities=11% Similarity=0.064 Sum_probs=170.6
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
++....+|+.+.+.. .++.....+|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .+....+ ...+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF-~~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVF-QGTD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTT-TTCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eecccee-ccCC
Confidence 556677888888864 466655667888889999988654 665666667665 4666555432 32 3444444 2345
Q ss_pred CCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccc
Q 041374 206 LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLE 285 (513)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~ 285 (513)
|+.+.+..+-.. .....+.+. +++.+.+..+ +.......|.....++...+.......
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~------------------- 172 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNY------------------- 172 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSE-------------------
T ss_pred cccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhccccccccccccccccee-------------------
Confidence 666666543211 112222222 3333333221 111222233333444433332221100
Q ss_pred cccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCc
Q 041374 286 AFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365 (513)
Q Consensus 286 ~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~ 365 (513)
...... ..... ......+.....+..+.+...... ....
T Consensus 173 -----------~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------------i~~~ 211 (379)
T 4h09_A 173 -----------VAENYV----------LYNKN---KTILESYPAAKTGTEFTIPSTVKT-----------------VTAY 211 (379)
T ss_dssp -----------EEETTE----------EEETT---SSEEEECCTTCCCSEEECCTTCCE-----------------ECTT
T ss_pred -----------ecccce----------ecccc---cceeccccccccccccccccceeE-----------------Eeec
Confidence 000000 00000 001111223334444433322111 1112
Q ss_pred cccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCC
Q 041374 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTT 445 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 445 (513)
.+..+.+|+.+.+..+ +. .+....+.....|+.+.+..+ ++......+.++.+|+.+.+..+ +......+|.+|++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 3445677888887654 22 444445555566688888765 55455667888999999999765 54345568899999
Q ss_pred CCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCC
Q 041374 446 LEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n 501 (513)
|+.+.+.++.++.....+|.++.+|+.+.+.++ +......+|.++..| .+++..+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 999999999888667788999999999999755 664455689999988 7777543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.3e-08 Score=84.11 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=64.2
Q ss_pred ccCCCCCCEEecccC-cCcccChHHHHh---hhcccceEEccCCcCcccC----CccccCCCCCCEEeCCCCccCcc---
Q 041374 367 LGNCQNLMLLSVSNN-KLTGALPPQILG---ILTLSILLDLSGNLLTGSI----PTEVGNLKNLVQLDLSENHFSIE--- 435 (513)
Q Consensus 367 l~~~~~L~~L~ls~n-~l~~~~p~~~~~---~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~--- 435 (513)
+..+++|++|++++| .+...-...+.. ..+.+++|++++|.+.+.. ...+...+.|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456778888888888 775432222221 1233466677776665432 22333445666666666666543
Q ss_pred -CCccccCCCCCCEEeC--CCCccccc----ccccccCCCCCCEEECCCCCCC
Q 041374 436 -IPVSLSACTTLEYLYM--EGNSVTGS----IPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 436 -~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+...+...++|++|+| ++|.+++. +...+...+.|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555566666666 56666543 2333444466666666666654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-08 Score=85.00 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=49.1
Q ss_pred cceEEccCC-cCccc----CCccccCCCCCCEEeCCCCccCccC----CccccCCCCCCEEeCCCCccccc----ccccc
Q 041374 398 SILLDLSGN-LLTGS----IPTEVGNLKNLVQLDLSENHFSIEI----PVSLSACTTLEYLYMEGNSVTGS----IPLAL 464 (513)
Q Consensus 398 l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 464 (513)
+++|++++| .+.+. +...+...++|++|++++|.+.+.. ...+...++|++|+|++|.+++. +...+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 355555555 54422 2223334455555555555554321 22233345555555555555532 23334
Q ss_pred cCCCCCCEEEC--CCCCCCcc----cchhhhcccCc-eEEccCCcc
Q 041374 465 NTLKSIKELDL--SRNNLSGH----IPEFLENLSFN-KMNETINDF 503 (513)
Q Consensus 465 ~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~l-~l~l~~n~l 503 (513)
...+.|++|+| ++|.|... +.+.+...+.| ++++++|.+
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 44455555555 45555433 22233334455 555555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7e-07 Score=81.04 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=51.5
Q ss_pred cCCCCCCEEeCCCCccCc--cCCccccCCCCCCEEeCCCCcccccccccccCCC--CCCEEECCCCCCCcccch------
Q 041374 417 GNLKNLVQLDLSENHFSI--EIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK--SIKELDLSRNNLSGHIPE------ 486 (513)
Q Consensus 417 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~------ 486 (513)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356777777777777775 3455566777788888888877744 2233333 778888888887765552
Q ss_pred -hhhcccCc-eEE
Q 041374 487 -FLENLSFN-KMN 497 (513)
Q Consensus 487 -~l~~l~~l-~l~ 497 (513)
.+..++.| .||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 34556666 554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-07 Score=78.20 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=65.1
Q ss_pred cceEEccCCcCcccCCccccCCCCCCEEeCCCCc-cCccCCccccCC----CCCCEEeCCCCc-ccccccccccCCCCCC
Q 041374 398 SILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENH-FSIEIPVSLSAC----TTLEYLYMEGNS-VTGSIPLALNTLKSIK 471 (513)
Q Consensus 398 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 471 (513)
++.||+++|.+++.....+..+++|++|+|++|. +++..-..+..+ ++|+.|+|++|. +++..-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 3677777777766656667788999999999985 766555556654 479999999985 8877677788899999
Q ss_pred EEECCCCC-CCc
Q 041374 472 ELDLSRNN-LSG 482 (513)
Q Consensus 472 ~L~l~~n~-l~~ 482 (513)
.|++++|+ ++.
T Consensus 143 ~L~L~~c~~Itd 154 (176)
T 3e4g_A 143 YLFLSDLPGVKE 154 (176)
T ss_dssp EEEEESCTTCCC
T ss_pred EEECCCCCCCCc
Confidence 99999987 553
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-07 Score=84.14 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCCCE--EeCCCCccC---ccCCccccCCCCCCEEeCCCCcccc--cccccccCCCCCCEEECCCCCCCcccchhhhc
Q 041374 418 NLKNLVQ--LDLSENHFS---IEIPVSLSACTTLEYLYMEGNSVTG--SIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490 (513)
Q Consensus 418 ~l~~L~~--L~l~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 490 (513)
..+.|+. ++++.|... ..+......+++|+.|+|++|++.+ .+|..+..+++|+.|+|++|+|.+. +.+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh
Confidence 3344444 666777432 2222233568999999999999997 4567778999999999999999864 33455
Q ss_pred cc--Cc-eEEccCCcccccCC
Q 041374 491 LS--FN-KMNETINDFCHHKP 508 (513)
Q Consensus 491 l~--~l-~l~l~~n~l~~~~p 508 (513)
+. .| ++++++|++++.+|
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCS
T ss_pred cccCCcceEEccCCcCccccC
Confidence 55 78 99999999999777
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.17 E-value=6.8e-07 Score=75.14 Aligned_cols=85 Identities=9% Similarity=-0.021 Sum_probs=72.9
Q ss_pred CCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCc-ccccccccccCC----CCCCEEECCCCC-CCcccchhhhcccC
Q 041374 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNS-VTGSIPLALNTL----KSIKELDLSRNN-LSGHIPEFLENLSF 493 (513)
Q Consensus 420 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~p~~l~~l~~ 493 (513)
..|+.||+++|.+++..-..+..+++|+.|+|++|. +++..-..+..+ ++|+.|+|++|. ++...-..+..++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999998877888999999999999995 887766677765 479999999996 88777778889999
Q ss_pred c-eEEccCCc-cc
Q 041374 494 N-KMNETIND-FC 504 (513)
Q Consensus 494 l-~l~l~~n~-l~ 504 (513)
| +|++++++ ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9 99999985 44
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=62.66 Aligned_cols=85 Identities=11% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCCCCEEecccC-cCcccChHHHH---hhhcccceEEccCCcCcccCCc----cccCCCCCCEEeCCCCccCccC----
Q 041374 369 NCQNLMLLSVSNN-KLTGALPPQIL---GILTLSILLDLSGNLLTGSIPT----EVGNLKNLVQLDLSENHFSIEI---- 436 (513)
Q Consensus 369 ~~~~L~~L~ls~n-~l~~~~p~~~~---~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~---- 436 (513)
..+.|++|+|+++ .+..+-...+. ..-+.++.|++++|++.+.... .+..-+.|++|+|++|.+.+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3466777777764 55422111111 1122235555555555433222 2223345555555555554322
Q ss_pred CccccCCCCCCEEeCCC
Q 041374 437 PVSLSACTTLEYLYMEG 453 (513)
Q Consensus 437 ~~~~~~l~~L~~L~L~~ 453 (513)
.+++..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22333344455555543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=60.66 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=67.2
Q ss_pred cccceEEccCC-cCccc----CCccccCCCCCCEEeCCCCccCccCC----ccccCCCCCCEEeCCCCccccc----ccc
Q 041374 396 TLSILLDLSGN-LLTGS----IPTEVGNLKNLVQLDLSENHFSIEIP----VSLSACTTLEYLYMEGNSVTGS----IPL 462 (513)
Q Consensus 396 ~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~ 462 (513)
+.|++|+++++ ++.+. +.+.+..-+.|+.|+|++|.+.+... +.+...+.|++|+|++|.|++. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34577888775 66532 33445556778888888887764433 3344567788888888887754 333
Q ss_pred cccCCCCCCEEECCCC---CCCc----ccchhhhcccCc-eEEccCCccc
Q 041374 463 ALNTLKSIKELDLSRN---NLSG----HIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 463 ~~~~l~~L~~L~l~~n---~l~~----~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
.+..-+.|++|+|++| .+.. .+.+.+..-+.| +++++.|.+.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4445566888888765 3332 234455666667 7777776543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0042 Score=49.46 Aligned_cols=57 Identities=26% Similarity=0.262 Sum_probs=38.4
Q ss_pred ceEEccCCcCc-ccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccc
Q 041374 399 ILLDLSGNLLT-GSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT 457 (513)
Q Consensus 399 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 457 (513)
..++.+++.++ ..+|..+. ++|++|+|++|.++..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46677777775 24554332 46788888888887544556677788888888887664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0073 Score=48.04 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=6.0
Q ss_pred CCCEEEcccccCC
Q 041374 156 SLSFLDISENAFS 168 (513)
Q Consensus 156 ~L~~L~Ls~n~i~ 168 (513)
+|++|+|++|.|+
T Consensus 32 ~l~~L~Ls~N~l~ 44 (130)
T 3rfe_A 32 DTTELVLTGNNLT 44 (130)
T ss_dssp TCSEEECTTSCCS
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 513 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.004 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 7e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 7e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.003 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.4 bits (220), Expect = 3e-20
Identities = 89/365 (24%), Positives = 134/365 (36%), Gaps = 65/365 (17%)
Query: 33 NETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQ--WTGVTC--GHRHRRVTKLVLRNQSI 88
N D+ A L IK L +P SW + C W GV C + RV L
Sbjct: 4 NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNL------- 55
Query: 89 GGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGN-RLHSRV 147
+L+ NL P +P S+ NL L + I G L +
Sbjct: 56 -----------------DLSGLNLPKPYP-----IPSSLANLPYLNFLYIGGINNLVGPI 93
Query: 148 PESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLE 207
P ++ +L L +L I+ SG + I +L + N L G+LP +I SLPNL
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLV 152
Query: 208 DLSVRQNNYTGSLPHSLSNASNLQLLDLSL-NHFSGQVKIDFNRLPNLFRLNFGKNNLGT 266
++ N +G++P S + S L N +G++ F L F G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212
Query: 267 GAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPE 326
++ + D G L+ +L + N+IYGT+P
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN---------NRIYGTLPQG 263
Query: 327 VKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNK-LTG 385
+ L L+ + +N L G IP GN Q + + +NNK L G
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-----------------QGGNLQRFDVSAYANNKCLCG 306
Query: 386 A-LPP 389
+ LP
Sbjct: 307 SPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 60.9 bits (146), Expect = 9e-11
Identities = 53/270 (19%), Positives = 88/270 (32%), Gaps = 17/270 (6%)
Query: 202 SLPNLEDLSVRQNNYTG--SLPHSLSNASNLQLLDLSLNH-FSGQVKIDFNRLPNLFRLN 258
+ +L + N +P SL+N L L + + G + +L L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 259 FGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQ 318
N+ L I L N G LP SI++L + + + G N+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFS------YNALSGTLPPSISSLPNLVGITFDG-NR 160
Query: 319 IYGTIPPEVKNLVNLNGF------GLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN 372
I G IP + L L + + + +S+ +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220
Query: 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHF 432
+ K + A +G+ LDL N + G++P + LK L L++S N+
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 433 SIEIPVSLSACTTLEYLYMEGNSVTGSIPL 462
EIP + N PL
Sbjct: 281 CGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 35/231 (15%)
Query: 298 LPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNL 357
+P S+ANL L+ G+N + G IPP + L L+ + + ++G IP + +++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 358 --------QLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT 409
L G +P S+ + NL+ ++ N+++GA+P L + +S N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 410 GSIPTEVGNLKNLVQLDLSE----------------------NHFSIEIPVSLSACTTLE 447
G IP NL + + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEF-----LENLSF 493
L + N + G++P L LK + L++S NNL G IP+ + ++
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 76.6 bits (187), Expect = 1e-15
Identities = 61/359 (16%), Positives = 120/359 (33%), Gaps = 16/359 (4%)
Query: 124 PPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLEL 183
S +L + + + S + + L +L+ ++ S N + + + + N++ L
Sbjct: 37 TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVD 92
Query: 184 IYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQ 243
I N + + + +L+N + L+L +++ S
Sbjct: 93 ILM--NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL 150
Query: 244 VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIA 303
+ + + L + I+ L I+
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210
Query: 304 NLSSTII---LFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNLQL 359
+++ I L + LN + +L NL L NQ++ P + +L L+L
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 270
Query: 360 RGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNL 419
N S++ L L+ + L L L N ++ P V +L
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328
Query: 420 KNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478
L +L + N S SL+ T + +L N ++ PLA L I +L L+
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 63.9 bits (154), Expect = 1e-11
Identities = 64/320 (20%), Positives = 109/320 (34%), Gaps = 41/320 (12%)
Query: 203 LPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN 262
L NL ++ N T P L N + L + ++ N + + L +
Sbjct: 65 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122
Query: 263 NLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIIL------FTMGL 316
+ + + + + + ++ L + +
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182
Query: 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGE-LRNLQLRGNV---PSSLGNCQN 372
+ + + L NL NQ++ P I L L L GN +L + N
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN 242
Query: 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIP------------------- 413
L L ++NN+++ P L LT L L N ++ P
Sbjct: 243 LTDLDLANNQISNLAPLSGLTKLTE---LKLGANQISNISPLAGLTALTNLELNENQLED 299
Query: 414 -TEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKE 472
+ + NLKNL L L N+ S P +S+ T L+ L+ N V+ +L L +I
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355
Query: 473 LDLSRNNLSGHIPEFLENLS 492
L N +S P L NL+
Sbjct: 356 LSAGHNQISDLTP--LANLT 373
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 59.6 bits (143), Expect = 3e-10
Identities = 68/381 (17%), Positives = 119/381 (31%), Gaps = 69/381 (18%)
Query: 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIP------------------- 117
+VT L I V L+ L +N ++N L P
Sbjct: 45 QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 102
Query: 118 --------YEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSG 169
G + ++ ++ + +LS L + G
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162
Query: 170 MFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASN 229
+ + +++L + L+ +++ L NLE L N + P +N
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTN 220
Query: 230 LQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGL 289
L L L+ N L NL L+ N + +A L+ +KL L
Sbjct: 221 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--------LAPLSGLTKLTELKL 270
Query: 290 DTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPH 349
N + PL+ L++ L + +KNL L L +N ++ P
Sbjct: 271 GANQISNISPLA--GLTALTNLELNENQLEDISPISNLKNLTYLT---LYFNNISDISP- 324
Query: 350 AIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLT 409
+ + L L +NNK++ L LT L N ++
Sbjct: 325 -----------------VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQIS 364
Query: 410 GSIPTEVGNLKNLVQLDLSEN 430
P + NL + QL L++
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 48.1 bits (113), Expect = 2e-06
Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 52 GVTKSWNNSISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNN 111
G+T N ++ Q ++ + +T L L +I V +L+ L+ + A+N
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNK 340
Query: 112 LHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA 166
+ S+ NL+ + + N++ P L L ++ L +++ A
Sbjct: 341 VSD---------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 67/316 (21%), Positives = 112/316 (35%), Gaps = 30/316 (9%)
Query: 195 LPVNIGFSLPNLED---LSVRQNNYTGSLPHS-LSNASNLQLLDLSLNHFSGQVKIDFNR 250
P+N F+ L + + + N T ++ + L + LQ L + G
Sbjct: 10 TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEY 64
Query: 251 LPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTII 310
L NL ++NF N L I L N +KL + N +ANL++
Sbjct: 65 LNNLTQINFSNNQLTD--------ITPLKNLTKLV--DILMNNNQIADITPLANLTNLTG 114
Query: 311 LFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC 370
L + NL L + ++ + + + L N
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174
Query: 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSEN 430
L L +S+NK++ +L LT L + N ++ P L NL +L L+ N
Sbjct: 175 TTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGN 229
Query: 431 HFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490
+L++ T L L + N ++ P L+ L + EL L N +S P L
Sbjct: 230 QLK--DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 283
Query: 491 LSFNKMNETINDFCHH 506
L+ E +
Sbjct: 284 LTALTNLELNENQLED 299
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 22/168 (13%)
Query: 60 SISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYE 119
S++ Q + +T L L N I + L+ L + L +N + P
Sbjct: 225 SLNGNQLKDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLA 282
Query: 120 -------------HGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENA 166
+ I NL L + + N + P + L L L + N
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK 340
Query: 167 FSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQN 214
S + SS+ N++++ + N++ P+ +L + L +
Sbjct: 341 VSDV--SSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.1 bits (165), Expect = 3e-13
Identities = 53/296 (17%), Positives = 88/296 (29%), Gaps = 28/296 (9%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
+P ++ P+ L ++ N T N NL L L N S F L
Sbjct: 24 KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L RL KN L + L N V L+ I++
Sbjct: 81 LERLYLSKNQLKELPEKMPKTLQELRVHE---------NEITKVRKSVFNGLNQMIVVEL 131
Query: 314 MG-LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGN-----VPSSL 367
+ G + + L+ + +T L L L GN +SL
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL 191
Query: 368 GNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDL 427
NL L +S N ++ + L L + L+ +P + + K + + L
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYL 249
Query: 428 SENHFS------IEIPVSLSACTTLEYLYMEGNSVTGS--IPLALNTLKSIKELDL 475
N+ S P + + + + N V P + + L
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.6 bits (135), Expect = 2e-09
Identities = 56/283 (19%), Positives = 97/283 (34%), Gaps = 31/283 (10%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
+P L + LLDL N + DF L NL L N + + G
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA----- 76
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
KLE L N LP + + + + ++ ++ + ++ +
Sbjct: 77 -PLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT- 133
Query: 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLS 398
L+ G + + L + +++ +T +P + LT
Sbjct: 134 ----------------NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTE- 175
Query: 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG 458
L L GN +T + L NL +L LS N S SL+ L L++ N +
Sbjct: 176 --LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 232
Query: 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETIN 501
+P L K I+ + L NN+S +N + +
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 9e-09
Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 23/202 (11%)
Query: 315 GLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ--------LRGNVPSS 366
GL ++ +PP+ L L+ N++T L+NL + P +
Sbjct: 21 GLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74
Query: 367 LGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLD 426
L L +S N+L LP ++ L L + N +T + L ++ ++
Sbjct: 75 FAPLVKLERLYLSKNQLKE-LPEKMPKTLQE---LRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 427 L--SENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHI 484
L + S + L Y+ + ++T + S+ EL L N ++
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVD 187
Query: 485 PEFLENLSFNKMNETINDFCHH 506
L+ L+ +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISA 209
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.7 bits (125), Expect = 4e-08
Identities = 51/292 (17%), Positives = 88/292 (30%), Gaps = 27/292 (9%)
Query: 64 CQWTGVTCGHRH---------RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHG 114
C V C L L+N I NL L + L +N +
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 115 EIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSS 174
P + L L+ + ++ N+L + L+ L EN + + S
Sbjct: 70 IS-------PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSV 119
Query: 175 IFNISSLELIYPLENRLEGSLPVNIGF-SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLL 233
++ + ++ N L+ S N F + L + + N T ++P L +L L
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 176
Query: 234 DLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNC-SKLEAFGLDTN 292
L N + L NL +L N++ G L HL
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236
Query: 293 IFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLT 344
+ + L + I + P + +G L N +
Sbjct: 237 GLADHKYIQVVYLHNNNI---SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 47/231 (20%), Positives = 80/231 (34%), Gaps = 12/231 (5%)
Query: 289 LDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIP 348
L N + NL + L + N+I P LV L L NQL
Sbjct: 38 LQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96
Query: 349 HAIGELRNLQLRGNVPSSLG-------NCQNLMLLSVSNNKLTGALPPQILGILTLSILL 401
L+ L++ N + + N ++ L + K +G G+ LS +
Sbjct: 97 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI- 155
Query: 402 DLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIP 461
++ +T +IP G +L +L L N + SL L L + NS++
Sbjct: 156 RIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212
Query: 462 LALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKPKVFA 512
+L ++EL L+ N L ++ + N+ F
Sbjct: 213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.4 bits (106), Expect = 8e-06
Identities = 25/119 (21%), Positives = 43/119 (36%)
Query: 393 GILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYME 452
+ + LLDL N +T + NLKNL L L N S P + + LE LY+
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87
Query: 453 GNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKPKVF 511
N + TL+ ++ + + + L + ++ + F
Sbjct: 88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 4e-10
Identities = 49/286 (17%), Positives = 87/286 (30%), Gaps = 28/286 (9%)
Query: 219 SLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHL 278
++P + + Q + L N S F NL L N + +D A
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-----LARIDAAAFT 77
Query: 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGL 338
+ D V P + L L + + P + L L L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH-LDRCGLQELGPGLFRGLAALQYLYL 136
Query: 339 EYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLS 398
+ N L + + NL L + N+++ +P + L
Sbjct: 137 QDNALQALPD----------------DTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSL 179
Query: 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG 458
L L N + P +L L+ L L N+ S +L+ L+YL + N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
Query: 459 SIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFC 504
+++ S + + +P+ L ++ ND
Sbjct: 240 DCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA--NDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 3e-09
Identities = 46/282 (16%), Positives = 79/282 (28%), Gaps = 21/282 (7%)
Query: 136 IDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSL 195
L + VP + + + + N S + +S +L +++ N L
Sbjct: 16 TSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 196 PVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLF 255
+ P + L L L F L L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 256 RLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315
L N L + L L N V + L S + +
Sbjct: 133 YLYLQDNALQALPDD------TFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLH 185
Query: 316 LNQIYGTIPPEVKNLVNLNGFGLEYN---QLTGPIPHAIGELRNLQLRGN----VPSSLG 368
N++ P ++L L L N L + L+ L+L N +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245
Query: 369 NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG 410
L S++++ +LP ++ G L L+ N L G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAGRD----LKRLAANDLQG 283
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 14/276 (5%)
Query: 134 QNIDIAGNRLHSRVPESLGQL--RSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRL 191
Q +D+ G LH P+ G+L + + + + F+ ++ + + +
Sbjct: 3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVI 58
Query: 192 EGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS--LNHFSGQVKIDFN 249
E S I L++LS+ + + ++L+ SNL L+LS ++ +
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118
Query: 250 RLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTI 309
L LN T + ++L G N+ L + + +
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178
Query: 310 ILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY-NQLTGPIPHAIGELRNLQ---LRGNVPS 365
L + E L L L + +GE+ L+ + G VP
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238
Query: 366 SLGN--CQNLMLLSVSNNKLTGALPPQILGILTLSI 399
+ L L ++ + T P I I
Sbjct: 239 GTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 401 LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTG-S 459
LDL+G L + + + ++ + + S ++++ + + + +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62
Query: 460 IPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492
+ L+ ++ L L LS I L S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/245 (13%), Positives = 66/245 (26%), Gaps = 18/245 (7%)
Query: 205 NLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSG-QVKIDFNRLPNLFRLNFGKNN 263
+ ++ L S +Q +DLS + + ++ L L+
Sbjct: 24 GVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 264 LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTI 323
L + L S L L L S + + T
Sbjct: 83 LSD------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 136
Query: 324 PPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKL 383
+ + + R + ++ + + C NL+ L +S++ +
Sbjct: 137 KHVQVAV---------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187
Query: 384 TGALPPQILGILTLSILLDLSG-NLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSA 442
Q L L LS + E+G + L L + + + A
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247
Query: 443 CTTLE 447
L+
Sbjct: 248 LPHLQ 252
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 418 NLKNLVQLDLSENHFSIE----IPVSLSACTTLEYLYMEGNSVTGSIPLAL-----NTLK 468
L L L++ S + +L A +L L + N + + L L
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 469 SIKELDLSRNNLSGHIPEFLENLSFNKMNETI 500
+++L L S + + L+ L +K + +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 8e-06
Identities = 13/113 (11%), Positives = 30/113 (26%), Gaps = 5/113 (4%)
Query: 401 LDLSGNLLTGSIPTEV-GNLKNLVQLDLSENHFSIE----IPVSLSACTTLEYLYMEGNS 455
LD+ L+ + E+ L+ + L + + I +L L L + N
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 456 VTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKP 508
+ + + + +L + T+
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (105), Expect = 1e-05
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 372 NLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTG----SIPTEVGNLKNLVQLDL 427
++ L + +L+ A ++L +L ++ L LT I + + L +L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 428 SENHFSIEIPVSL-----SACTTLEYLYMEGN 454
N + + ++ L ++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (103), Expect = 2e-05
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 421 NLVQLDLSENHFS-IEIPVSLSACTTLEYLYMEGNSVTG----SIPLALNTLKSIKELDL 475
++ LD+ S L + + ++ +T I AL ++ EL+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 476 SRNNLSGH-IPEFLENLSFNKMNETINDFCHH 506
N L + L+ L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.004
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 229 NLQLLDLSLNHFS-GQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAF 287
++Q LD+ S + L + L D+ + L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI--SSALRVNPALAEL 60
Query: 288 GLDTNIFGGVLPLSIANL 305
L +N G V +
Sbjct: 61 NLRSNELGDVGVHCVLQG 78
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 403 LSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPL 462
N + I + +L +L++S N E+P LE L N + +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVP- 320
Query: 463 ALNTLKSIKELDLSRNNLSG--HIPEFLENLSFN 494
+++K+L + N L IPE +E+L N
Sbjct: 321 --ELPQNLKQLHVEYNPLREFPDIPESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 0.001
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 311 LFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSL-GN 369
+ + ++ +L LN + N+L +P L L N + +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELN---VSNNKLIE-LPALPPRLERLIASFNHLAEVPEL 322
Query: 370 CQNLMLLSVSNNKLTGALPPQILGILTLSI 399
QNL L V N L P + L +
Sbjct: 323 PQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 20/197 (10%)
Query: 194 SLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPN 253
+LP ++ + L + +N +L + L L+L LP
Sbjct: 24 ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD--RAELTKLQVDGTLPV 78
Query: 254 LFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFT 313
L L+ N L + + A + LPL +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLD--------VSFNRLTSLPLGALRGLGELQELY 130
Query: 314 MGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ---LRGN----VPSS 366
+ N++ P + L L N LT + L NL L+ N +P
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 367 LGNCQNLMLLSVSNNKL 383
L + N
Sbjct: 191 FFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 44/231 (19%), Positives = 66/231 (28%), Gaps = 31/231 (13%)
Query: 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGK 261
+ + +++ + N T +LP L + +L LS N L +LN
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN--- 61
Query: 262 NNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYG 321
L + L L L+
Sbjct: 62 --LDRAELTKLQVDGTLPVLGTLDLS---------------------HNQLQSLPLLGQT 98
Query: 322 TIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNN 381
V ++ L L G L+ +L+ P L L LS++NN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 382 KLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHF 432
LT LP +L L L L N L +IP L L N +
Sbjct: 159 NLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 6e-04
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 366 SLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQL 425
+ + + ++ LT ALPP + T+ L LS NLL + L QL
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQL 60
Query: 426 DLSENHF 432
+L
Sbjct: 61 NLDRAEL 67
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.004
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 415 EVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELD 474
EV + + ++++ + + + +P L L++ N + L + +L+
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 475 LSRNN-LSGHIPEFLENLSFNKMNETINDFCHH 506
L R + L L ++
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 7e-05
Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 21/236 (8%)
Query: 196 PVNIGFSLPNLE---DLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLP 252
+N+ F P L ++ ++N T ++ + ++ + L + + + L
Sbjct: 8 AINVIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQY--LN 63
Query: 253 NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILF 312
NL L N + A S + + + +
Sbjct: 64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123
Query: 313 TMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN 372
+ + ++ + N++ + L + + + L N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPL---------AGLTNLQYLSIGNAQVSDLTPLANLSK 174
Query: 373 LMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLS 428
L L +NK++ P L L I + L N ++ P + N NL + L+
Sbjct: 175 LTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 7e-05
Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 9/146 (6%)
Query: 351 IGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLS-GNLLT 409
+ EL+ Q+ + + + ++ L ++ +I + L+ + +
Sbjct: 1 LNELKPEQVE-QLKLIMSKRYDGSQQALDLKGL-----RSDPDLVAQNIDVVLNRRSSMA 54
Query: 410 GSIPTEVGNLKNLVQLDLSENHFSI--EIPVSLSACTTLEYLYMEGNSVTGSIPLALNTL 467
++ N+ L+ L+LS N ++ + L+ L + GN + L
Sbjct: 55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 114
Query: 468 KSIKELDLSRNNLSGHIPEFLENLSF 493
++EL L N+LS + +S
Sbjct: 115 LKLEELWLDGNSLSDTFRDQSTYISA 140
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 355 RNLQLRGN---VPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGS 411
R L L V L + L +S+N+L P + L L L +
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56
Query: 412 IPTEVGNLKNLVQLDLSENHF-SIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSI 470
V NL L +L L N L +C L L ++GNS+ + + +
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
Query: 471 KEL 473
+
Sbjct: 117 PSV 119
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIE 435
L +++ LT L L L LDLS N L P + L+ L L + ++E
Sbjct: 3 LHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQA--SDNALE 56
Query: 436 IPVSLSACTTLEYLYMEGNSVTG-SIPLALNTLKSIKELDLSRNNLSG 482
++ L+ L + N + + L + + L+L N+L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.002
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 322 TIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLR------GNVPSSLGNCQNLML 375
T+ ++ L+ + L +N+L P A+ LR L++ + N L
Sbjct: 11 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQE 69
Query: 376 LSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLV 423
L + NN+L + Q L +LL+L GN L L ++
Sbjct: 70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 22/187 (11%)
Query: 64 CQWTGVTCGHRH---------RRVTKLVLR-NQSIGGFLSPYVGNLSFLRFVNLASNNLH 113
C+ T V C R T+L+L N+ G L L + L N L
Sbjct: 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 114 GEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHS 173
G P Q + + N++ + L L L++ +N S +
Sbjct: 68 GIEPNAFEGASHI-------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120
Query: 174 SIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLL 233
S +++SL + ++ + L S+ P + + +Q+
Sbjct: 121 SFEHLNSL--TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIK 175
Query: 234 DLSLNHF 240
DL + F
Sbjct: 176 DLPHSEF 182
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 36.7 bits (83), Expect = 0.003
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 409 TGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLK 468
L L L+L +N S +P S +L L + N + LA +
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAE 149
Query: 469 SIKELDLSRNNLSGHIPEFLENLSFNKMNETINDF 503
+++ L+ P + ++ + ++F
Sbjct: 150 WLRKKSLNGGAARCGAPSKVRDVQIKDLPH--SEF 182
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.003
Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 6/130 (4%)
Query: 382 KLTGALPPQILGILTLSIL--LDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVS 439
KLT L Q LDL G + I L +D S+N I
Sbjct: 2 KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE--IRKLDG 58
Query: 440 LSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSG-HIPEFLENLSFNKMNE 498
L+ L + N + L + EL L+ N+L + L +L
Sbjct: 59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118
Query: 499 TINDFCHHKP 508
+ + +K
Sbjct: 119 ILRNPVTNKK 128
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.68 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.61 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.58 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.5 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.49 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.49 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.44 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.31 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.18 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.17 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.2 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.17 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.86 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.74 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.18 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.14 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=5.6e-38 Score=297.81 Aligned_cols=292 Identities=28% Similarity=0.493 Sum_probs=235.3
Q ss_pred CcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCc--ccceeeCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCCCEE
Q 041374 32 SNETDRLAYLAIKSQLQDPLGVTKSWNNSISLCQ--WTGVTCGHRH--RRVTKLVLRNQSIGG--FLSPYVGNLSFLRFV 105 (513)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~~v~c~~~~--~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~L 105 (513)
|.++|++||++||+++.+|. .+.+|..+.|||. |.||+|+... .||+.|+|+++.+.| .+|..++++++|++|
T Consensus 3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L 81 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccc
Confidence 78999999999999999875 6899998889994 9999998643 489999999999987 478999999999999
Q ss_pred eCCC-CCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEE
Q 041374 106 NLAS-NNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELI 184 (513)
Q Consensus 106 ~L~~-n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 184 (513)
+|++ |+++| .+|+.|+++++|++|++++|++.+..+..+..+++|+++++++|.+.+.+|..+.+++.++.+
T Consensus 82 ~Ls~~N~l~g-------~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l 154 (313)
T d1ogqa_ 82 YIGGINNLVG-------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp EEEEETTEES-------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred cccccccccc-------ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence 9987 78884 456789999999999999999999888889999999999999999999999999999999999
Q ss_pred eCCCCcCcccCCccccCCCCC-CCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCC
Q 041374 185 YPLENRLEGSLPVNIGFSLPN-LEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNN 263 (513)
Q Consensus 185 ~l~~n~l~~~lp~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 263 (513)
++++|.+.+.+|..+. .+.+ ++.+++++|++++..|..+.++..+ .+++.++...+..+..+..+++++.++++++.
T Consensus 155 ~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 232 (313)
T d1ogqa_ 155 TFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred eccccccccccccccc-cccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 9999999999998887 5555 5899999999998888888877554 79999999998899889999999999999887
Q ss_pred CCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCc
Q 041374 264 LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQ 342 (513)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 342 (513)
+.+. +..+..+++++.|++++|.+.+.+|.+++.++. ++.+++++|+++|.+|. +..+++|+.+++++|+
T Consensus 233 l~~~-------~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~-L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 233 LAFD-------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCB-------GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT-CCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred cccc-------ccccccccccccccCccCeecccCChHHhCCCC-CCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 7652 233455566666666666665555555555543 55555555555554443 2344444445555544
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=1e-28 Score=233.50 Aligned_cols=170 Identities=32% Similarity=0.563 Sum_probs=125.0
Q ss_pred eecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCC-CCEEecccCcCcccChHHHHhhhccc
Q 041374 320 YGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQN-LMLLSVSNNKLTGALPPQILGILTLS 398 (513)
Q Consensus 320 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~-L~~L~ls~n~l~~~~p~~~~~~~~~l 398 (513)
.+.+|..+..++.++.+++++|.+.+.+|..+..+ .. ++.+++++|++++..|..+.. ...
T Consensus 138 ~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l----------------~~l~~~l~~~~n~l~~~~~~~~~~-l~~- 199 (313)
T d1ogqa_ 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF----------------SKLFTSMTISRNRLTGKIPPTFAN-LNL- 199 (313)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC----------------CTTCCEEECCSSEEEEECCGGGGG-CCC-
T ss_pred cccCchhhccCcccceeeccccccccccccccccc----------------cccccccccccccccccccccccc-ccc-
Confidence 33445555566667777777776666555443322 33 366777777777666655433 333
Q ss_pred ceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCC
Q 041374 399 ILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRN 478 (513)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 478 (513)
..++++++...+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|++++.+|..+.++++|++|+|++|
T Consensus 200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N 278 (313)
T d1ogqa_ 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence 467888888887888888888899999999998886544 5778889999999999998889999999999999999999
Q ss_pred CCCcccchhhhcccCc-eEEccCCc-cccc-CCC
Q 041374 479 NLSGHIPEFLENLSFN-KMNETIND-FCHH-KPK 509 (513)
Q Consensus 479 ~l~~~~p~~l~~l~~l-~l~l~~n~-l~~~-~p~ 509 (513)
+++|.+|+ +.+++.| .+++++|+ ++|. +|.
T Consensus 279 ~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~ 311 (313)
T d1ogqa_ 279 NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp EEEEECCC-STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred cccccCCC-cccCCCCCHHHhCCCccccCCCCCC
Confidence 99988885 4778888 88888887 6765 554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.7e-26 Score=224.85 Aligned_cols=189 Identities=27% Similarity=0.367 Sum_probs=128.2
Q ss_pred CCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeE
Q 041374 279 TNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ 358 (513)
Q Consensus 279 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 358 (513)
..+++++.+++++|.+.+..|. .... .++.++++.|.+.. ++.+..+++|+.+++++|.+++..
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~~--~~~~-~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~----------- 257 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITPL--GILT-NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA----------- 257 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGGG--GGCT-TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-----------
T ss_pred ccccccceeeccCCccCCCCcc--cccC-CCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC-----------
Confidence 3344445555555544443331 1222 25555666555543 134566778888888888777432
Q ss_pred EeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCc
Q 041374 359 LRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPV 438 (513)
Q Consensus 359 l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 438 (513)
.+..+++|++|+++++++.+ +++ +.. ...++.+++++|.+++ +..+..+++++.|++++|++.+. +
T Consensus 258 -------~~~~~~~L~~L~l~~~~l~~-~~~-~~~-~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~- 323 (384)
T d2omza2 258 -------PLSGLTKLTELKLGANQISN-ISP-LAG-LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S- 323 (384)
T ss_dssp -------GGTTCTTCSEEECCSSCCCC-CGG-GTT-CTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-
T ss_pred -------cccccccCCEeeccCcccCC-CCc-ccc-cccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-
Confidence 13456788888888888873 332 222 3344888888888874 33467788899999999988753 2
Q ss_pred cccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhcccCc-eEEccCC
Q 041374 439 SLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFN-KMNETIN 501 (513)
Q Consensus 439 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l-~l~l~~n 501 (513)
.+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..| +.++++| .+++++|
T Consensus 324 ~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 324 PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 37788899999999998873 44 58888999999999999886554 7888888 9998887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=2.2e-25 Score=216.86 Aligned_cols=340 Identities=23% Similarity=0.285 Sum_probs=215.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
..++.|+++++++... ..+..+++|++|++++|+++ .++ .++++++|++|++++|.+.+.. .++.++
T Consensus 44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~--------~l~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~ 110 (384)
T d2omza2 44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT--------DIT-PLKNLTKLVDILMNNNQIADIT--PLANLT 110 (384)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC--------CCG-GGTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC--------CCc-cccCCccccccccccccccccc--cccccc
Confidence 3577777777777642 34667777888888877776 333 3777777888888777776632 267777
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|+.|+++++.+++..+ ......+.......+.+.. +................... ....+...........
T Consensus 111 ~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 182 (384)
T d2omza2 111 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDI 182 (384)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEEC
T ss_pred ccccccccccccccccc--ccccccccccccccccccc-cccccccccccccccccccc-----hhhhhccccccccccc
Confidence 77777777777665433 2233444444444444331 11111001111111111110 1112223333333333
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEec
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMG 315 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~ 315 (513)
..|... ....+..+++++.+++++|.+.+. .....+++|+.+++++|.+.+. ..+..++. ++.+++.
T Consensus 183 ~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~--------~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~l~ 249 (384)
T d2omza2 183 SSNKVS--DISVLAKLTNLESLIATNNQISDI--------TPLGILTNLDELSLNGNQLKDI--GTLASLTN-LTDLDLA 249 (384)
T ss_dssp CSSCCC--CCGGGGGCTTCSEEECCSSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT-CSEEECC
T ss_pred cccccc--cccccccccccceeeccCCccCCC--------CcccccCCCCEEECCCCCCCCc--chhhcccc-cchhccc
Confidence 333322 233455666677777776665542 1234456677777777766543 23444444 7777777
Q ss_pred cccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhh
Q 041374 316 LNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
.|.+.+..+ +..+++|++++++++++.+.. .+..++.++.+.++.|.+.+ ++ .+ ...
T Consensus 250 ~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~------------------~~~~~~~l~~l~~~~n~l~~-~~-~~-~~~ 306 (384)
T d2omza2 250 NNQISNLAP--LSGLTKLTELKLGANQISNIS------------------PLAGLTALTNLELNENQLED-IS-PI-SNL 306 (384)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCG------------------GGTTCTTCSEEECCSSCCSC-CG-GG-GGC
T ss_pred cCccCCCCc--ccccccCCEeeccCcccCCCC------------------cccccccccccccccccccc-cc-cc-chh
Confidence 777765433 677889999999999887432 13456788999999998874 33 23 344
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
..++.+++++|++++.. .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..| +.++++|+.|+|
T Consensus 307 ~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L 380 (384)
T d2omza2 307 KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380 (384)
T ss_dssp TTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred cccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence 45599999999998643 37889999999999999973 44 68999999999999999996654 889999999999
Q ss_pred CCC
Q 041374 476 SRN 478 (513)
Q Consensus 476 ~~n 478 (513)
++|
T Consensus 381 ~~N 383 (384)
T d2omza2 381 NDQ 383 (384)
T ss_dssp CCE
T ss_pred CCC
Confidence 987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=4e-24 Score=200.96 Aligned_cols=122 Identities=19% Similarity=0.225 Sum_probs=82.4
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
++|+.|++++|...+..+..+... ..+++|++++|.+++..+..+.++++|++|++++|.++ .+|.++..+++|++|+
T Consensus 171 ~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~ 248 (305)
T d1xkua_ 171 PSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248 (305)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred CccCEEECCCCcCCCCChhHhhcc-ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence 456666666666654444443333 33467777777777666667777888888888888887 6777888888888888
Q ss_pred CCCCccccccccc------ccCCCCCCEEECCCCCCC--cccchhhhcccCc
Q 041374 451 MEGNSVTGSIPLA------LNTLKSIKELDLSRNNLS--GHIPEFLENLSFN 494 (513)
Q Consensus 451 L~~n~l~~~~~~~------~~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~l 494 (513)
|++|+|+...... ...+.+|+.|+|++|++. ...|.+|..+...
T Consensus 249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~ 300 (305)
T d1xkua_ 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300 (305)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence 8888887433323 334677888999999875 3445566655443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=2.8e-23 Score=195.10 Aligned_cols=272 Identities=22% Similarity=0.189 Sum_probs=189.8
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcC
Q 041374 181 LELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFG 260 (513)
Q Consensus 181 L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 260 (513)
.+.++.++.+++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 344555555555 6666543 467777777777774333456777777777777777776666667777777777777
Q ss_pred CCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccC
Q 041374 261 KNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEY 340 (513)
Q Consensus 261 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (513)
+|++..... .....++.|+...|.+.+.. +..+.....+..++...
T Consensus 88 ~n~l~~l~~---------~~~~~l~~L~~~~n~l~~l~-------------------------~~~~~~~~~~~~l~~~~ 133 (305)
T d1xkua_ 88 KNQLKELPE---------KMPKTLQELRVHENEITKVR-------------------------KSVFNGLNQMIVVELGT 133 (305)
T ss_dssp SSCCSBCCS---------SCCTTCCEEECCSSCCCBBC-------------------------HHHHTTCTTCCEEECCS
T ss_pred CCccCcCcc---------chhhhhhhhhccccchhhhh-------------------------hhhhhcccccccccccc
Confidence 776654321 11123444444444433322 22233444555666665
Q ss_pred CcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCC
Q 041374 341 NQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLK 420 (513)
Q Consensus 341 n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~ 420 (513)
+...... ..+..+..+++|+.+++++|.+. .+|..+ .+.++.|++++|..++..+..+.+++
T Consensus 134 n~~~~~~--------------~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~ 195 (305)
T d1xkua_ 134 NPLKSSG--------------IENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLN 195 (305)
T ss_dssp SCCCGGG--------------BCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred ccccccC--------------CCccccccccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhccc
Confidence 5433111 12233455678999999999886 566543 45569999999999988888999999
Q ss_pred CCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchh------hhcccCc
Q 041374 421 NLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEF------LENLSFN 494 (513)
Q Consensus 421 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~------l~~l~~l 494 (513)
.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..+++|++|++++|+|+...... ...+..+
T Consensus 196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L 274 (305)
T d1xkua_ 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274 (305)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCC
Confidence 9999999999999888889999999999999999998 77889999999999999999998543333 3456777
Q ss_pred -eEEccCCccc-ccCCC
Q 041374 495 -KMNETINDFC-HHKPK 509 (513)
Q Consensus 495 -~l~l~~n~l~-~~~p~ 509 (513)
.+++++|++. +.+|.
T Consensus 275 ~~L~L~~N~~~~~~~~~ 291 (305)
T d1xkua_ 275 SGVSLFSNPVQYWEIQP 291 (305)
T ss_dssp SEEECCSSSSCGGGSCG
T ss_pred CEEECCCCcCccCcCCH
Confidence 9999999985 56664
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.7e-22 Score=184.46 Aligned_cols=221 Identities=22% Similarity=0.220 Sum_probs=117.6
Q ss_pred eCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCC-C
Q 041374 185 YPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKN-N 263 (513)
Q Consensus 185 ~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~ 263 (513)
+.++.+++ .+|..+. +.+++|+|++|+++...+..|.++++|++|++++|.+....+..+..++.++.+....+ .
T Consensus 17 ~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 17 SCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp ECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 44444555 6665543 45677777777777444456777777777777777777666666666666666654322 2
Q ss_pred CCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcC
Q 041374 264 LGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQL 343 (513)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 343 (513)
+..... ..+..+++|+.|++++|. +....+..+....+|+.+++++|++
T Consensus 93 ~~~l~~------~~~~~l~~L~~L~l~~n~-------------------------~~~~~~~~~~~~~~L~~l~l~~N~l 141 (284)
T d1ozna_ 93 LRSVDP------ATFHGLGRLHTLHLDRCG-------------------------LQELGPGLFRGLAALQYLYLQDNAL 141 (284)
T ss_dssp CCCCCT------TTTTTCTTCCEEECTTSC-------------------------CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccccc------hhhcccccCCEEecCCcc-------------------------cccccccccchhcccchhhhccccc
Confidence 222111 122233333333333322 2222223344455566666666666
Q ss_pred ccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCC
Q 041374 344 TGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLV 423 (513)
Q Consensus 344 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (513)
++..+.. +..+++|+.|++++|.+. .+++..+...+.|+++++++|++++..|..+..+++|+
T Consensus 142 ~~i~~~~----------------f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~ 204 (284)
T d1ozna_ 142 QALPDDT----------------FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (284)
T ss_dssp CCCCTTT----------------TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccChhH----------------hccccchhhcccccCccc-ccchhhhccccccchhhhhhccccccChhHhhhhhhcc
Confidence 5322222 233355666666666655 33333333334445666666666555555555666666
Q ss_pred EEeCCCCccCccCCccccCCCCCCEEeCCCCccc
Q 041374 424 QLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT 457 (513)
Q Consensus 424 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 457 (513)
+|++++|.+.+..+..|+.+++|++|++++|++.
T Consensus 205 ~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccccccccccccccccccccCEEEecCCCCC
Confidence 6666666665544455555666666666666555
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.3e-21 Score=179.73 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcc-cccCCccCcccccC
Q 041374 100 SFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDIS-ENAFSGMFHSSIFN 177 (513)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~i~~~~~~~~~~ 177 (513)
+.+++|+|++|+|+ .+| .+|.++++|++|++++|.+....+..+..+..+++++.. .+.++...+..|.+
T Consensus 32 ~~~~~L~Ls~N~i~--------~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 103 (284)
T d1ozna_ 32 AASQRIFLHGNRIS--------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (284)
T ss_dssp TTCSEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCCEEECcCCcCC--------CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 45677777777776 333 256777777777777777777666666667777776654 44555555666666
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 257 (513)
+++|++|++++|.+. .++...+....+|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+++
T Consensus 104 l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l 182 (284)
T d1ozna_ 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (284)
T ss_dssp CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchh
Confidence 777777777776665 3333333355666667777666664444556666666666666666665555556666666666
Q ss_pred EcCCCCCCC
Q 041374 258 NFGKNNLGT 266 (513)
Q Consensus 258 ~L~~n~~~~ 266 (513)
++++|++++
T Consensus 183 ~l~~N~l~~ 191 (284)
T d1ozna_ 183 LLHQNRVAH 191 (284)
T ss_dssp ECCSSCCCE
T ss_pred hhhhccccc
Confidence 665555443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.6e-21 Score=174.63 Aligned_cols=177 Identities=26% Similarity=0.258 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
+++.|+|++|.+.+..+..|.++++|++|+|++|+++ .++ .++.+++|++|++++|+++. .+..+..+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~--------~l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~ 101 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--------KLQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPA 101 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------EEE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTT
T ss_pred CCCEEECcCCcCCCcCHHHhhcccccccccccccccc--------ccc-cccccccccccccccccccc-cccccccccc
Confidence 4556666666665554455556666666666666554 222 23445566666666665554 3445555566
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.+....+..+..+.+++.|++++|.+. .+|...+..+++++++++++|++++..+..+..+++|++|+|+
T Consensus 102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls 180 (266)
T d1p9ag_ 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (266)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccccccccceeecc
Confidence 666666666655555555555566666666666555 4444444455556666666666654444455555666666666
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCC
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 265 (513)
+|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp SSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 66655 44555555555666666655544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=6e-20 Score=168.14 Aligned_cols=168 Identities=23% Similarity=0.265 Sum_probs=74.8
Q ss_pred EcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCC-cccCCCCCCCEEEeecCcccccCccccCCCCCCCEE
Q 041374 82 VLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLP-PSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFL 160 (513)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 160 (513)
+.++++++. +|..+. +++++|+|++|.++ .+| ..|.++++|++|++++|.++. +| .++.+++|++|
T Consensus 16 ~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~--------~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 82 (266)
T d1p9ag_ 16 NCDKRNLTA-LPPDLP--KDTTILHLSENLLY--------TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL 82 (266)
T ss_dssp ECTTSCCSS-CCSCCC--TTCCEEECTTSCCS--------EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred EccCCCCCe-eCcCcC--cCCCEEECcCCcCC--------CcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence 444444443 333332 34555555555554 222 234555555555555555543 22 23445555555
Q ss_pred EcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccc
Q 041374 161 DISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHF 240 (513)
Q Consensus 161 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 240 (513)
++++|+++.. +..+.++++|+.|+++++.+. .++...+..+.++++|++++|.++...+..+..+++++.+++++|++
T Consensus 83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l 160 (266)
T d1p9ag_ 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (266)
T ss_dssp ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccc-ccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence 5555555432 333444444444444444444 23322222444444444444444433333333444444444444444
Q ss_pred cccccccccCCCCCcEEEcCCCCC
Q 041374 241 SGQVKIDFNRLPNLFRLNFGKNNL 264 (513)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~n~~ 264 (513)
++..+..|..+++|++|+|++|++
T Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~N~L 184 (266)
T d1p9ag_ 161 TELPAGLLNGLENLDTLLLQENSL 184 (266)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccCccccccccccceeecccCCC
Confidence 433333344444444444444433
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=1.2e-18 Score=166.63 Aligned_cols=307 Identities=25% Similarity=0.304 Sum_probs=165.8
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCC-C
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNI-S 179 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~ 179 (513)
++++|+|++++++ .+|+. .++|++|++++|+++. +|+. ..+|+.|++++|.++... .+ +
T Consensus 39 ~l~~LdLs~~~L~--------~lp~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~l~-----~lp~ 98 (353)
T d1jl5a_ 39 QAHELELNNLGLS--------SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-----DLPP 98 (353)
T ss_dssp TCSEEECTTSCCS--------CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-----SCCT
T ss_pred CCCEEEeCCCCCC--------CCCCC---CCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccchhh-----hhcc
Confidence 4555666665554 33432 2456666666666653 4433 245666666666655321 11 2
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEc
Q 041374 180 SLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNF 259 (513)
Q Consensus 180 ~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 259 (513)
.|++|++++|.+. .+|. .. .+++|++++++++.+.. .+.. ...+..+.+.++... ....+..++.++.+++
T Consensus 99 ~L~~L~L~~n~l~-~lp~-~~-~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l 169 (353)
T d1jl5a_ 99 LLEYLGVSNNQLE-KLPE-LQ-NSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYA 169 (353)
T ss_dssp TCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEEC
T ss_pred ccccccccccccc-cccc-hh-hhccceeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceeccc
Confidence 4666666666665 5664 23 67888888888888763 3332 345666666555443 2345667777888888
Q ss_pred CCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEecc
Q 041374 260 GKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLE 339 (513)
Q Consensus 260 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (513)
..+......... ...+.+...++.+. .+ ..+..++.++.++++
T Consensus 170 ~~n~~~~~~~~~----------~~~~~l~~~~~~~~--------------------------~~-~~~~~l~~L~~l~l~ 212 (353)
T d1jl5a_ 170 DNNSLKKLPDLP----------LSLESIVAGNNILE--------------------------EL-PELQNLPFLTTIYAD 212 (353)
T ss_dssp CSSCCSSCCCCC----------TTCCEEECCSSCCS--------------------------SC-CCCTTCTTCCEEECC
T ss_pred cccccccccccc----------cccccccccccccc--------------------------cc-ccccccccccccccc
Confidence 777654422100 01111111111111 11 123445666666666
Q ss_pred CCcCccCCCccccCCCCeEEeccCC-ccccCCCCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccC
Q 041374 340 YNQLTGPIPHAIGELRNLQLRGNVP-SSLGNCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGN 418 (513)
Q Consensus 340 ~n~~~~~~~~~~~~l~~L~l~~~~~-~~l~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~ 418 (513)
+|... ..+.....+..+.+..... ........+...++..+.+.+ ++ .........++..+.+.+. ...
T Consensus 213 ~n~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-l~----~l~~~~~~~~~~~~~~~~~----~~~ 282 (353)
T d1jl5a_ 213 NNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSL----CDL 282 (353)
T ss_dssp SSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE-ES----CCCTTCCEEECCSSCCSEE----CCC
T ss_pred ccccc-ccccccccccccccccccccccccccccccccccccccccc-cc----cccchhcccccccCccccc----ccc
Confidence 66544 2333333333333322211 111123455566665554432 11 1112224556666655522 234
Q ss_pred CCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhccc
Q 041374 419 LKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLS 492 (513)
Q Consensus 419 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 492 (513)
+++|++|++++|++. .+|.. +++|++|++++|+++ .+|.. +++|++|++++|++. .+|+....+.
T Consensus 283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~ 347 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVE 347 (353)
T ss_dssp CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCC
T ss_pred CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccC
Confidence 678888899888887 56653 578888888888887 56643 457888888888887 5665444444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=2.4e-17 Score=157.33 Aligned_cols=313 Identities=24% Similarity=0.275 Sum_probs=200.7
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCC
Q 041374 77 RVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRS 156 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 156 (513)
+++.|++++++++. +|+. .++|++|++++|+|+ .+|+. ..+|+.|++++|.++. ++. +. +.
T Consensus 39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~--------~lp~~---~~~L~~L~l~~n~l~~-l~~-lp--~~ 99 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT--------ELPEL---PQSLKSLLVDNNNLKA-LSD-LP--PL 99 (353)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS--------SCCCC---CTTCCEEECCSSCCSC-CCS-CC--TT
T ss_pred CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc--------ccccc---hhhhhhhhhhhcccch-hhh-hc--cc
Confidence 57899999999875 5543 578999999999998 55654 3589999999998875 332 21 46
Q ss_pred CCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCc
Q 041374 157 LSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLS 236 (513)
Q Consensus 157 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 236 (513)
|++|++++|.++.. | .+..+++|+.++++++.+. ..+. ....+..+.+..+... .+..+..++.++.+++.
T Consensus 100 L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 100 LEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYAD 170 (353)
T ss_dssp CCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred cccccccccccccc-c-chhhhccceeecccccccc-cccc----ccccccchhhcccccc--ccccccccccceecccc
Confidence 99999999999855 4 3678999999999999887 4443 3457778888777654 23457788899999999
Q ss_pred cccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccccCCcCchhhhccccccceEEecc
Q 041374 237 LNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGL 316 (513)
Q Consensus 237 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~ 316 (513)
+|..... +. .....+.+....+.+.. ......++.++.+++++|..... +.. ...+....+..
T Consensus 171 ~n~~~~~-~~---~~~~~~~l~~~~~~~~~--------~~~~~~l~~L~~l~l~~n~~~~~-~~~----~~~l~~~~~~~ 233 (353)
T d1jl5a_ 171 NNSLKKL-PD---LPLSLESIVAGNNILEE--------LPELQNLPFLTTIYADNNLLKTL-PDL----PPSLEALNVRD 233 (353)
T ss_dssp SSCCSSC-CC---CCTTCCEEECCSSCCSS--------CCCCTTCTTCCEEECCSSCCSSC-CSC----CTTCCEEECCS
T ss_pred ccccccc-cc---ccccccccccccccccc--------ccccccccccccccccccccccc-ccc----ccccccccccc
Confidence 9877632 21 22334556655554432 13345677788888887765432 211 11144444444
Q ss_pred ccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCC-CCCCEEecccCcCcccChHHHHhhh
Q 041374 317 NQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNC-QNLMLLSVSNNKLTGALPPQILGIL 395 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~L~~L~ls~n~l~~~~p~~~~~~~ 395 (513)
+.+... + .....+...++..+.+.+ +..+ ......++..+.+.+ ++ ..+
T Consensus 234 ~~~~~~-~---~~~~~l~~~~~~~~~~~~---------------------l~~l~~~~~~~~~~~~~~~~-~~----~~~ 283 (353)
T d1jl5a_ 234 NYLTDL-P---ELPQSLTFLDVSENIFSG---------------------LSELPPNLYYLNASSNEIRS-LC----DLP 283 (353)
T ss_dssp SCCSCC-C---CCCTTCCEEECCSSCCSE---------------------ESCCCTTCCEEECCSSCCSE-EC----CCC
T ss_pred cccccc-c---cccccccccccccccccc---------------------cccccchhcccccccCcccc-cc----ccC
Confidence 433321 1 112334444444443331 1111 234456666665542 22 223
Q ss_pred cccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEEC
Q 041374 396 TLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDL 475 (513)
Q Consensus 396 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 475 (513)
+.|++|++++|+++ .+|. .+++|+.|++++|.++ .+|.. +++|++|++++|+++ .+|... ..|+.|.+
T Consensus 284 ~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 284 PSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM 351 (353)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred CCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence 45688888888887 4553 3578889999999887 56653 467899999999987 666533 35666655
Q ss_pred C
Q 041374 476 S 476 (513)
Q Consensus 476 ~ 476 (513)
.
T Consensus 352 ~ 352 (353)
T d1jl5a_ 352 N 352 (353)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=5.9e-22 Score=197.00 Aligned_cols=395 Identities=17% Similarity=0.137 Sum_probs=209.0
Q ss_pred cEEEEEcCCCCCccc-cCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCccccc----Ccccc
Q 041374 77 RVTKLVLRNQSIGGF-LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSR----VPESL 151 (513)
Q Consensus 77 ~v~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~----~p~~l 151 (513)
+++.||++++++++. +...+..++++++|+|++|+++.... ..++..+..+++|++||+++|.++.. +...+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~---~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l 79 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH---HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHH---HHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence 588999999999874 34456678999999999998763211 13344567889999999999988632 22333
Q ss_pred C-CCCCCCEEEcccccCCcc----CcccccCCCCCcEEeCCCCcCcccC----CccccCCCCCCCEEEccCCccccc---
Q 041374 152 G-QLRSLSFLDISENAFSGM----FHSSIFNISSLELIYPLENRLEGSL----PVNIGFSLPNLEDLSVRQNNYTGS--- 219 (513)
Q Consensus 152 ~-~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~l----p~~~~~~l~~L~~L~l~~n~l~~~--- 219 (513)
. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.- ........................
T Consensus 80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
T d1z7xw1 80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159 (460)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence 3 235799999999998754 3455677889999999998876321 111111122333444444333211
Q ss_pred -CcccccCCCCCCeeeCccccccccccc----cc-cCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccccc
Q 041374 220 -LPHSLSNASNLQLLDLSLNHFSGQVKI----DF-NRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNI 293 (513)
Q Consensus 220 -~~~~l~~l~~L~~L~L~~n~~~~~~~~----~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 293 (513)
....+.....++.++++++........ .+ ........+++..+.+..... ......+...+.++.+++.+|.
T Consensus 160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~~l~~~~n~ 237 (460)
T d1z7xw1 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALGSNK 237 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECCSSB
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhh--hcccccccccccccccchhhcc
Confidence 112234456777788777665422111 11 122355667776665543211 1122334455667777777665
Q ss_pred cCCcCc----hhhhccccccceEEeccccceec----CCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCc
Q 041374 294 FGGVLP----LSIANLSSTIILFTMGLNQIYGT----IPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPS 365 (513)
Q Consensus 294 ~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~ 365 (513)
+..... .........++.++++.|.+... ....+...+.++.+++++|.+.+.....+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~------------ 305 (460)
T d1z7xw1 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE------------ 305 (460)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH------------
T ss_pred ccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc------------
Confidence 432211 11111222355555555544321 1222334455566666665554321111100
Q ss_pred cc-cCCCCCCEEecccCcCcccChHHHHh---hhcccceEEccCCcCccc----CCcccc-CCCCCCEEeCCCCccCcc-
Q 041374 366 SL-GNCQNLMLLSVSNNKLTGALPPQILG---ILTLSILLDLSGNLLTGS----IPTEVG-NLKNLVQLDLSENHFSIE- 435 (513)
Q Consensus 366 ~l-~~~~~L~~L~ls~n~l~~~~p~~~~~---~~~~l~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~~~~~- 435 (513)
.+ .....|+.+++++|.+.......+.. ....|++|++++|++++. ++..+. ..+.|++|++++|.+++.
T Consensus 306 ~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 385 (460)
T d1z7xw1 306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 385 (460)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH
Confidence 00 11245666666666655433222221 122346666666666532 122222 345566666666666532
Q ss_pred ---CCccccCCCCCCEEeCCCCcccccccccc----c-CCCCCCEEECCCCCCCcccchhh
Q 041374 436 ---IPVSLSACTTLEYLYMEGNSVTGSIPLAL----N-TLKSIKELDLSRNNLSGHIPEFL 488 (513)
Q Consensus 436 ---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~l~~~~p~~l 488 (513)
+++.+..+++|++|+|++|++++.....+ . ....|+.|++.+|.+....+..+
T Consensus 386 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 23344555666666666666654322222 1 22356666666666654444433
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.5e-21 Score=188.91 Aligned_cols=386 Identities=16% Similarity=0.143 Sum_probs=214.4
Q ss_pred CCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccc----cCccccCCCCCCCEEEcccccCCccCc----
Q 041374 101 FLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHS----RVPESLGQLRSLSFLDISENAFSGMFH---- 172 (513)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~i~~~~~---- 172 (513)
+|++||++++++++. .+.+.+..++++++|+|++|.++. .++..+..+++|++|++++|.++....
T Consensus 3 ~l~~ld~~~~~i~~~------~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~ 76 (460)
T d1z7xw1 3 DIQSLDIQCEELSDA------RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 76 (460)
T ss_dssp EEEEEEEESCCCCHH------HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCEEEeeCCcCChH------HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence 577888888887742 122234566788888888887763 234456677888888888887753221
Q ss_pred cccc-CCCCCcEEeCCCCcCccc----CCccccCCCCCCCEEEccCCcccccCcccc----c-CCCCCCeeeCccccccc
Q 041374 173 SSIF-NISSLELIYPLENRLEGS----LPVNIGFSLPNLEDLSVRQNNYTGSLPHSL----S-NASNLQLLDLSLNHFSG 242 (513)
Q Consensus 173 ~~~~-~l~~L~~L~l~~n~l~~~----lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~-~l~~L~~L~L~~n~~~~ 242 (513)
..+. ...+|+.|++++|.+++. ++..+. .+++|++|++++|.++......+ . .................
T Consensus 77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~-~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 155 (460)
T d1z7xw1 77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 155 (460)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHhcCCCCCCEEECCCCCccccccccccchhh-ccccccccccccccchhhhhhhhhhcccccccccccccccccccch
Confidence 2222 224677777777766532 122222 45667777777776653211111 1 11122222222222211
Q ss_pred c----ccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccC-CCcccccccccccccCCcCc----hhhhccccccceEE
Q 041374 243 Q----VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLT-NCSKLEAFGLDTNIFGGVLP----LSIANLSSTIILFT 313 (513)
Q Consensus 243 ~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~l~~l~ 313 (513)
. ....+...+.++.++++++........ .....+. .......++...+.+..... ..+.... .++.++
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~l~ 232 (460)
T d1z7xw1 156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELA 232 (460)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEE
T ss_pred hhhccccccccccccccccccccccccccccc--ccccccccccccccccccccccccchhhhcccccccccc-cccccc
Confidence 1 011123345666666666544321100 0001111 11123344444443332111 1111222 255666
Q ss_pred ecccccee-----cCCccccCCCCCCEEeccCCcCccCCCccccCCCCeEEeccCCccccCCCCCCEEecccCcCcccCh
Q 041374 314 MGLNQIYG-----TIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQLRGNVPSSLGNCQNLMLLSVSNNKLTGALP 388 (513)
Q Consensus 314 l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~p 388 (513)
+..+.... ...........++.+++++|.+...... .....+...+.++.+++++|.+.+...
T Consensus 233 ~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~------------~~~~~l~~~~~l~~l~l~~n~i~~~~~ 300 (460)
T d1z7xw1 233 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG------------DLCRVLRAKESLKELSLAGNELGDEGA 300 (460)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH------------HHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred hhhccccccccchhhcccccccccccccccccccccccccc------------ccccccccccccccccccccccccccc
Confidence 66554432 1222233455677777777665532111 011223456789999999998864333
Q ss_pred HHH----HhhhcccceEEccCCcCcccCCc----cccCCCCCCEEeCCCCccCcc----CCcccc-CCCCCCEEeCCCCc
Q 041374 389 PQI----LGILTLSILLDLSGNLLTGSIPT----EVGNLKNLVQLDLSENHFSIE----IPVSLS-ACTTLEYLYMEGNS 455 (513)
Q Consensus 389 ~~~----~~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~----~~~~~~-~l~~L~~L~L~~n~ 455 (513)
..+ ......++.++++++.++..... .+...++|++|++++|.+.+. ++..+. ..+.|++|+|++|+
T Consensus 301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~ 380 (460)
T d1z7xw1 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380 (460)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence 332 22334578999999988755333 334567899999999998754 333343 46789999999999
Q ss_pred cccc----ccccccCCCCCCEEECCCCCCCcccchhh----h-cccCc-eEEccCCcccccCC
Q 041374 456 VTGS----IPLALNTLKSIKELDLSRNNLSGHIPEFL----E-NLSFN-KMNETINDFCHHKP 508 (513)
Q Consensus 456 l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l----~-~l~~l-~l~l~~n~l~~~~p 508 (513)
+++. +...+..+++|++||+++|+|+......+ . +...| .+++.+|.+..+.+
T Consensus 381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~ 443 (460)
T d1z7xw1 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443 (460)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred CChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence 9853 45567778999999999999986554443 2 23357 99999999876543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.6e-16 Score=141.45 Aligned_cols=171 Identities=19% Similarity=0.295 Sum_probs=92.0
Q ss_pred cCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCccccc
Q 041374 97 GNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIF 176 (513)
Q Consensus 97 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 176 (513)
..+.+|++|++.+|+++ .++ .++.+++|++|++++|.+++..| +.++++|+++++++|.++.. ..+.
T Consensus 38 ~~l~~L~~L~l~~~~i~--------~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~ 104 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVT--------TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA 104 (227)
T ss_dssp HHHHTCCEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred HHcCCcCEEECCCCCCC--------cch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccc
Confidence 44556666666666655 332 35566666666666666655322 56666666666666665532 2355
Q ss_pred CCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcE
Q 041374 177 NISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFR 256 (513)
Q Consensus 177 ~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 256 (513)
.+++|+.++++++...+ ++. +. ..+.++.+.++++.+... ..+..+++|++|++++|.+.+. ..+.++++|++
T Consensus 105 ~l~~L~~l~l~~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~ 177 (227)
T d1h6ua2 105 GLQSIKTLDLTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTT 177 (227)
T ss_dssp TCTTCCEEECTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred ccccccccccccccccc-cch-hc-cccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhccccccee
Confidence 56666666666655542 211 11 345566666666655422 1245556666666666655432 22555666666
Q ss_pred EEcCCCCCCCCCCCCchhhcccCCCcccccccccccccC
Q 041374 257 LNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDTNIFG 295 (513)
Q Consensus 257 L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 295 (513)
|++++|++.+. ..+..+++|+.|++++|.++
T Consensus 178 L~Ls~n~l~~l--------~~l~~l~~L~~L~Ls~N~lt 208 (227)
T d1h6ua2 178 LKADDNKISDI--------SPLASLPNLIEVHLKNNQIS 208 (227)
T ss_dssp EECCSSCCCCC--------GGGGGCTTCCEEECTTSCCC
T ss_pred cccCCCccCCC--------hhhcCCCCCCEEECcCCcCC
Confidence 66666655431 12344455555555555443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=4.1e-17 Score=141.03 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=116.3
Q ss_pred CCCCcccceeeCCCCCcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeec
Q 041374 61 ISLCQWTGVTCGHRHRRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAG 140 (513)
Q Consensus 61 ~~~c~~~~v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 140 (513)
.+.|.|..|.|+. +++.. +|..+. +++++|+|++|.|++.++ +..|.++++|++|++++
T Consensus 5 ~C~C~~~~v~Cs~------------~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~------~~~f~~l~~L~~L~L~~ 63 (192)
T d1w8aa_ 5 MCHCEGTTVDCTG------------RGLKE-IPRDIP--LHTTELLLNDNELGRISS------DGLFGRLPHLVKLELKR 63 (192)
T ss_dssp TSEEETTEEECTT------------SCCSS-CCSCCC--TTCSEEECCSCCCCSBCC------SCSGGGCTTCCEEECCS
T ss_pred CCEEcCCEEEEeC------------CCcCc-cCCCCC--CCCCEEEeCCCCCccccc------ccccCCCceEeeeeccc
Confidence 3557777777753 34442 444442 678999999999875433 33678889999999999
Q ss_pred CcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccC
Q 041374 141 NRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSL 220 (513)
Q Consensus 141 n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~ 220 (513)
|.+....+..|..+++|++|++++|+++...+..|.++++|++|++++|+++ .+|...+..+++|+++++++|.+....
T Consensus 64 N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~~~ 142 (192)
T d1w8aa_ 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCccccccccccccccccc
Confidence 9998888888888999999999999999888888888888888888888888 666666657888888888888876432
Q ss_pred cccccCCCCCCeeeCcccccccccc
Q 041374 221 PHSLSNASNLQLLDLSLNHFSGQVK 245 (513)
Q Consensus 221 ~~~l~~l~~L~~L~L~~n~~~~~~~ 245 (513)
...+ -...++.+.+..+.+....|
T Consensus 143 ~~~~-~~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 143 HLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp GGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred chHH-HhhhhhhhcccCCCeEeCCC
Confidence 2111 11234455555555554444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=2.7e-16 Score=137.85 Aligned_cols=145 Identities=26% Similarity=0.353 Sum_probs=66.5
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCC
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNL 206 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L 206 (513)
++.+++|++|++++|.+++. + .++.+++|++|++++|++++. + .+.++++|+.+++++|.+. .++ .+. .++++
T Consensus 64 l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~-~~~-~l~-~l~~l 136 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGIS-DIN-GLV-HLPQL 136 (210)
T ss_dssp GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCC-CCG-GGG-GCTTC
T ss_pred HhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c-ccccccccccccccccccc-ccc-ccc-ccccc
Confidence 34444555555555544442 1 134445555555555544432 1 2444445555555544443 222 122 34555
Q ss_pred CEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
+.+++++|.+++ +..+..+++|+++++++|++.+.. .+.++++|++|++++|.++.. ..+..+++|+.
T Consensus 137 ~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l--------~~l~~l~~L~~ 204 (210)
T d1h6ta2 137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL--------RALAGLKNLDV 204 (210)
T ss_dssp CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC--------GGGTTCTTCSE
T ss_pred cccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC--------hhhcCCCCCCE
Confidence 555555555542 123444555555555555554321 245555555555555554321 22444555555
Q ss_pred cccc
Q 041374 287 FGLD 290 (513)
Q Consensus 287 L~l~ 290 (513)
|+++
T Consensus 205 L~Ls 208 (210)
T d1h6ta2 205 LELF 208 (210)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 5543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=4.3e-16 Score=135.36 Aligned_cols=149 Identities=21% Similarity=0.353 Sum_probs=87.8
Q ss_pred CCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccC
Q 041374 98 NLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFN 177 (513)
Q Consensus 98 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 177 (513)
.++++++|+++++.++ .+. .++.+++|++|++++|.+++..| ++++++|++|++++|.+.... .+.+
T Consensus 38 ~l~~l~~L~l~~~~i~--------~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~ 104 (199)
T d2omxa2 38 DLDQVTTLQADRLGIK--------SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLAN 104 (199)
T ss_dssp HHTTCCEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred HhcCCCEEECCCCCCC--------Ccc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccc
Confidence 4556666666666655 222 35556666666666666655322 666666666666666655332 3556
Q ss_pred CCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEE
Q 041374 178 ISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRL 257 (513)
Q Consensus 178 l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 257 (513)
+++|+.++++++.... ++ .+. .+++|+.+++++|++. .++ .+..+++|++|++.+|++++. ..++++++|++|
T Consensus 105 l~~L~~L~l~~~~~~~-~~-~~~-~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L 177 (199)
T d2omxa2 105 LTNLTGLTLFNNQITD-ID-PLK-NLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERL 177 (199)
T ss_dssp CTTCSEEECCSSCCCC-CG-GGT-TCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred cccccccccccccccc-cc-ccc-hhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC--ccccCCCCCCEE
Confidence 6666666666665552 22 122 5666777777777665 233 466666777777777766542 236666777777
Q ss_pred EcCCCCCCC
Q 041374 258 NFGKNNLGT 266 (513)
Q Consensus 258 ~L~~n~~~~ 266 (513)
++++|++++
T Consensus 178 ~ls~N~i~~ 186 (199)
T d2omxa2 178 DISSNKVSD 186 (199)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCCCCC
Confidence 777766654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=6.7e-16 Score=137.29 Aligned_cols=186 Identities=24% Similarity=0.372 Sum_probs=152.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
..++.|++.++++... ..+.++++|++|++++|.+++ ++ .+.++++|+++++++|.++. + ..+..++
T Consensus 41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~--------~~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~ 107 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITD--------LA-PLKNLTKITELELSGNPLKN-V-SAIAGLQ 107 (227)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC--------CG-GGTTCCSCCEEECCSCCCSC-C-GGGTTCT
T ss_pred CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeec--------cc-cccccccccccccccccccc-c-ccccccc
Confidence 4689999999998863 458899999999999999873 22 48899999999999999875 3 3588999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++++++++...+. ..+...+.++.+.++.+.+....+ +. .+++|++|++++|.+... + .+.++++|++|++
T Consensus 108 ~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~L 180 (227)
T d1h6ua2 108 SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKA 180 (227)
T ss_dssp TCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred ccccccccccccccc--chhccccchhhhhchhhhhchhhh--hc-cccccccccccccccccc-h-hhcccccceeccc
Confidence 999999999987654 346778899999999998873322 33 678999999999998743 3 4889999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCcccccccccc
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEAFGLDT 291 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 291 (513)
++|++.+. + .++.+++|++|++++|+++.. ..++++++|+.|++++
T Consensus 181 s~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i--------~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 181 DDNKISDI-S-PLASLPNLIEVHLKNNQISDV--------SPLANTSNLFIVTLTN 226 (227)
T ss_dssp CSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC--------GGGTTCTTCCEEEEEE
T ss_pred CCCccCCC-h-hhcCCCCCCEEECcCCcCCCC--------cccccCCCCCEEEeeC
Confidence 99999753 3 488999999999999998763 2477888898888764
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.7e-16 Score=142.90 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=30.5
Q ss_pred cCCCCCCCEEEeecCcccccC-ccccCCCCCCCEEEccc-ccCCccCcccccCCCCCcEEeCCCCcCc
Q 041374 127 IGNLSALQNIDIAGNRLHSRV-PESLGQLRSLSFLDISE-NAFSGMFHSSIFNISSLELIYPLENRLE 192 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 192 (513)
|.++++|++|++++|.+...+ +..|..+++++++.+.. |.+....+..|.++++|+.++++++++.
T Consensus 49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence 444555555555555444322 22344445555554432 3344444444455555555555555444
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.66 E-value=2e-16 Score=136.66 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=72.1
Q ss_pred CCCCEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEe
Q 041374 371 QNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLY 450 (513)
Q Consensus 371 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 450 (513)
+++++|+|++|++++.++...+.....|++|++++|.+....+..+..+++|++|++++|++.+..+..|.++++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 45666666666665555555555555556666666666655666666666677777777766655555666666777777
Q ss_pred CCCCcccccccccccCCCCCCEEECCCCCCCc
Q 041374 451 MEGNSVTGSIPLALNTLKSIKELDLSRNNLSG 482 (513)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 482 (513)
|++|+|++..+..|..+++|++|+|++|++..
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccccccCHHHhcCCccccccccccccccc
Confidence 77776665556666666667777776666653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1.3e-15 Score=133.46 Aligned_cols=164 Identities=24% Similarity=0.369 Sum_probs=137.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
..++.|+++++.+.+.. .+..+++|++|++++|+++ .++ .++.+++|++|++++|++++ +| .+..++
T Consensus 46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~--------~l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~ 112 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT--------DIK-PLANLKNLGWLFLDENKVKD-LS-SLKDLK 112 (210)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC--------CCG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc--------Ccc-ccccCccccccccccccccc-cc-cccccc
Confidence 35888999999887642 4788999999999999988 334 46889999999999999987 44 588999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|+.|++++|.+... ..+..+++++.+++++|.+.+ .+ ... .+++|+++++++|++++ ++ .+.++++|++|++
T Consensus 113 ~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~-~~-~~~-~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~L 185 (210)
T d1h6ta2 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-IT-VLS-RLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYL 185 (210)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred ccccccccccccccc--ccccccccccccccccccccc-cc-ccc-ccccccccccccccccc-cc-cccCCCCCCEEEC
Confidence 999999999988643 468889999999999999873 32 333 68999999999999984 44 3889999999999
Q ss_pred ccccccccccccccCCCCCcEEEcCC
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRLNFGK 261 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L~L~~ 261 (513)
++|++++ ++ .+..+++|++|++++
T Consensus 186 s~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 SKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 9999974 44 589999999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1.8e-15 Score=131.40 Aligned_cols=160 Identities=26% Similarity=0.373 Sum_probs=133.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCC
Q 041374 76 RRVTKLVLRNQSIGGFLSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLR 155 (513)
Q Consensus 76 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 155 (513)
.+++.|+++++++... ..+..+++|++|++++|+++ .++ .++++++|++|++++|.+.. ++ .+.+++
T Consensus 40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~--------~~~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~ 106 (199)
T d2omxa2 40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT--------DIT-PLKNLTKLVDILMNNNQIAD-IT-PLANLT 106 (199)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC--------CCG-GGTTCTTCCEEECCSSCCCC-CG-GGTTCT
T ss_pred cCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc--------Ccc-cccCCccccccccccccccc-cc-cccccc
Confidence 5688999999988753 35788999999999999988 334 38899999999999999876 33 488999
Q ss_pred CCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCcccccCcccccCCCCCCeeeC
Q 041374 156 SLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDL 235 (513)
Q Consensus 156 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 235 (513)
+|++|++++|.+... ..+..+++|+.+++++|++. .++ .+. .+++|++|++.+|++++ ++ .++++++|++|++
T Consensus 107 ~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~-~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~l 179 (199)
T d2omxa2 107 NLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALS-GLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDI 179 (199)
T ss_dssp TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGT-TCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred ccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccc-ccccccccccccccccC-Cc-cccCCCCCCEEEC
Confidence 999999999988754 45788999999999999987 454 344 78999999999999984 44 4889999999999
Q ss_pred ccccccccccccccCCCCCcEE
Q 041374 236 SLNHFSGQVKIDFNRLPNLFRL 257 (513)
Q Consensus 236 ~~n~~~~~~~~~~~~l~~L~~L 257 (513)
++|++++. + .++++++|++|
T Consensus 180 s~N~i~~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 180 SSNKVSDI-S-VLAKLTNLESL 199 (199)
T ss_dssp CSSCCCCC-G-GGGGCTTCSEE
T ss_pred CCCCCCCC-c-cccCCCCCCcC
Confidence 99999753 3 57888888875
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.1e-15 Score=134.46 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=124.6
Q ss_pred CCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC-cccccCCCCCcEEeCCC-CcCcccCCccccCCCCCCCE
Q 041374 131 SALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF-HSSIFNISSLELIYPLE-NRLEGSLPVNIGFSLPNLED 208 (513)
Q Consensus 131 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~-n~l~~~lp~~~~~~l~~L~~ 208 (513)
+++++|++++|.++...+..|.++++|++|++++|.+...+ +..|.++++++.+.+.. +.+. .++...+..+++|++
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~ 107 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY 107 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccccc
Confidence 47899999999998766667899999999999999887643 55678888888888754 5555 444444447888999
Q ss_pred EEccCCcccccCc-ccccCCCCCCeeeCccccccccccccccCCC-CCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 209 LSVRQNNYTGSLP-HSLSNASNLQLLDLSLNHFSGQVKIDFNRLP-NLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 209 L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
+++++|++....+ ..+..+..+..+...++.+....+..+..++ .++.+++++|+++......+ ..+++
T Consensus 108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-------~~~~l-- 178 (242)
T d1xwdc1 108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-------NGTQL-- 178 (242)
T ss_dssp EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-------TTCCE--
T ss_pred cccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-------cchhh--
Confidence 9998888763322 1233445555555566666555455555543 56777777766654322111 11111
Q ss_pred ccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCcCccCCCccccCCCCeE
Q 041374 287 FGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQ 358 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 358 (513)
.+.+.+.+|+++..-+..+..+++|++|++++|+++...+..+.+++.|+
T Consensus 179 ----------------------~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 228 (242)
T d1xwdc1 179 ----------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 228 (242)
T ss_dssp ----------------------EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred ----------------------hccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccc
Confidence 22233444455533344567788888888888888744334455554443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-15 Score=139.99 Aligned_cols=256 Identities=17% Similarity=0.172 Sum_probs=147.6
Q ss_pred CEEEccCCcccccCcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 207 EDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 207 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
+.+|++++.+.......+.. .....+.+........ ........+|++|+++++.+... .....+..|++|++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~-----~l~~l~~~c~~L~~ 75 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVS-----TLHGILSQCSKLQN 75 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHH-----HHHHHHTTBCCCSE
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHH-----HHHHHHHhCCCccc
Confidence 36778777664222222211 1234555555444321 22233456788888887766542 12233566677777
Q ss_pred ccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCC-cCccCCCccccCCCCeEEeccCCc
Q 041374 287 FGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYN-QLTGPIPHAIGELRNLQLRGNVPS 365 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~l~~~~~~ 365 (513)
|+++++.+.+..+ ..+..+++|++|++++| .+++.... .
T Consensus 76 L~L~~~~l~~~~~-------------------------~~l~~~~~L~~L~Ls~c~~itd~~l~---------------~ 115 (284)
T d2astb2 76 LSLEGLRLSDPIV-------------------------NTLAKNSNLVRLNLSGCSGFSEFALQ---------------T 115 (284)
T ss_dssp EECTTCBCCHHHH-------------------------HHHTTCTTCSEEECTTCBSCCHHHHH---------------H
T ss_pred ccccccCCCcHHH-------------------------HHHhcCCCCcCccccccccccccccc---------------h
Confidence 7777665543333 33455667777777775 34321100 0
Q ss_pred cccCCCCCCEEecccCc-Cccc-ChHHHHhhhcccceEEccCC--cCccc-CCccccCCCCCCEEeCCCCc-cCccCCcc
Q 041374 366 SLGNCQNLMLLSVSNNK-LTGA-LPPQILGILTLSILLDLSGN--LLTGS-IPTEVGNLKNLVQLDLSENH-FSIEIPVS 439 (513)
Q Consensus 366 ~l~~~~~L~~L~ls~n~-l~~~-~p~~~~~~~~~l~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~l~~n~-~~~~~~~~ 439 (513)
-...+++|++|++++|. +++. +...+....+.++.|+++++ .+++. +......+++|++|++++|. +++.....
T Consensus 116 l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~ 195 (284)
T d2astb2 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195 (284)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh
Confidence 12346778888888763 3322 22233334455688888765 34432 22233467888888888864 66667777
Q ss_pred ccCCCCCCEEeCCCC-cccccccccccCCCCCCEEECCCCCCCcccchhhhcccCceEEccCCcccccCCCCC
Q 041374 440 LSACTTLEYLYMEGN-SVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLENLSFNKMNETINDFCHHKPKVF 511 (513)
Q Consensus 440 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~l~l~l~~n~l~~~~p~~~ 511 (513)
+..+++|++|++++| .+++.....+.++++|+.|++++|--.+.++...+.++++ .+..+++++..+..+
T Consensus 196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L--~i~~~~ls~~~~~~~ 266 (284)
T d2astb2 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL--QINCSHFTTIARPTI 266 (284)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS--EESCCCSCCTTCSSC
T ss_pred hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc--cccCccCCCCCCCcc
Confidence 788888888888886 5776666777888888888888873333344444556644 345667776655443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3e-15 Score=137.58 Aligned_cols=217 Identities=20% Similarity=0.200 Sum_probs=126.1
Q ss_pred CCCCCCEEEccCCccccc-CcccccCCCCCCeeeCccccccccccccccCCCCCcEEEcCCCC-CCCCCCCCchhhcccC
Q 041374 202 SLPNLEDLSVRQNNYTGS-LPHSLSNASNLQLLDLSLNHFSGQVKIDFNRLPNLFRLNFGKNN-LGTGAIGDLDFIAHLT 279 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~l~ 279 (513)
...+|++|++++|.++.. +...+.++++|++|+++++.+.+..+..+.++++|++|++++|. ++.. .......
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-----~l~~l~~ 118 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLS 118 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHH
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-----ccchhhH
Confidence 345777888887776533 33445677778888888777766666667777777777777652 2210 0000112
Q ss_pred CCcccccccccccccCCcCchhhhccccccceEEeccccceecCCccccCCCCCCEEeccCCc-CccCCCccccCCCCeE
Q 041374 280 NCSKLEAFGLDTNIFGGVLPLSIANLSSTIILFTMGLNQIYGTIPPEVKNLVNLNGFGLEYNQ-LTGPIPHAIGELRNLQ 358 (513)
Q Consensus 280 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~ 358 (513)
.+++|++|++++|. +++....
T Consensus 119 -------------------------------------------------~~~~L~~L~ls~c~~~~~~~~~--------- 140 (284)
T d2astb2 119 -------------------------------------------------SCSRLDELNLSWCFDFTEKHVQ--------- 140 (284)
T ss_dssp -------------------------------------------------HCTTCCEEECCCCTTCCHHHHH---------
T ss_pred -------------------------------------------------HHHhccccccccccccccccch---------
Confidence 23455555555542 2211000
Q ss_pred EeccCCccc-cCCCCCCEEecccC--cCcccChHHHHhhhcccceEEccCC-cCcccCCccccCCCCCCEEeCCCC-ccC
Q 041374 359 LRGNVPSSL-GNCQNLMLLSVSNN--KLTGALPPQILGILTLSILLDLSGN-LLTGSIPTEVGNLKNLVQLDLSEN-HFS 433 (513)
Q Consensus 359 l~~~~~~~l-~~~~~L~~L~ls~n--~l~~~~p~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~~~ 433 (513)
..+ ..+++|+.|+++++ .+++.....+....+.|++|++++| .+++..+..+.++++|++|++++| .++
T Consensus 141 ------~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~ 214 (284)
T d2astb2 141 ------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214 (284)
T ss_dssp ------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ------hhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence 001 11346666666654 2332222233333445577777775 466666667778888999999886 566
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccccccccCCCCCCEEECCCCCCCcccchhhhc
Q 041374 434 IEIPVSLSACTTLEYLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLSGHIPEFLEN 490 (513)
Q Consensus 434 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 490 (513)
+.....++.+++|+.|++++|--.+.+......+++|+ +..+++++..++.+++
T Consensus 215 ~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268 (284)
T ss_dssp GGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred hHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence 66666778888999999988822223333334566654 4667777666665554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.4e-14 Score=120.54 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=64.2
Q ss_pred ccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccc
Q 041374 96 VGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSI 175 (513)
Q Consensus 96 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 175 (513)
+.+...+++|+|++|+|+ .++..+..+++|++|++++|.++.. +.+..+++|++|++++|.++...+..+
T Consensus 14 ~~n~~~lr~L~L~~n~I~--------~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~ 83 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP--------VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD 83 (162)
T ss_dssp EECTTSCEEEECTTSCCC--------SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred ccCcCcCcEEECCCCCCC--------ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccc
Confidence 345556777777777766 4554455666777777777776653 246666777777777777665544444
Q ss_pred cCCCCCcEEeCCCCcCcccCCc-cccCCCCCCCEEEccCCccc
Q 041374 176 FNISSLELIYPLENRLEGSLPV-NIGFSLPNLEDLSVRQNNYT 217 (513)
Q Consensus 176 ~~l~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~l~~n~l~ 217 (513)
..+++|+.|++++|++. .++. .....+++|+++++++|.++
T Consensus 84 ~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 84 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccccccccceecccccc-ccccccccccccccchhhcCCCccc
Confidence 55555555555555554 2221 11114455555555555544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.5e-14 Score=120.42 Aligned_cols=128 Identities=17% Similarity=0.267 Sum_probs=81.0
Q ss_pred ccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 041374 126 SIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGFSLPN 205 (513)
Q Consensus 126 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~ 205 (513)
.+.++..|++|++++|.++. ++..+..+++|++|++++|.++.. +.+..+++|+.|++++|++. .++..++..+++
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~ 88 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 88 (162)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence 35667788888888888876 455566778888888888887754 34666677777777777776 455544435667
Q ss_pred CCEEEccCCcccccCc--ccccCCCCCCeeeCccccccccc---cccccCCCCCcEEE
Q 041374 206 LEDLSVRQNNYTGSLP--HSLSNASNLQLLDLSLNHFSGQV---KIDFNRLPNLFRLN 258 (513)
Q Consensus 206 L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~~~~~~---~~~~~~l~~L~~L~ 258 (513)
|++|++++|+++. ++ ..+..+++|++|++++|.+.... +..+..+|+|+.||
T Consensus 89 L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 89 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccceeccccccc-cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 7777777776652 22 24556666666666666664221 11244455555544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=8.8e-14 Score=109.88 Aligned_cols=102 Identities=26% Similarity=0.335 Sum_probs=57.0
Q ss_pred CEEecccCcCcccChHHHHhhhcccceEEccCCcCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCC
Q 041374 374 MLLSVSNNKLTGALPPQILGILTLSILLDLSGNLLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEG 453 (513)
Q Consensus 374 ~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 453 (513)
+.|++++|+++ .++. + .....+++|++++|+++ .+|..+..+++|++|++++|.+. .+| .+..+++|++|++++
T Consensus 1 R~L~Ls~n~l~-~l~~-l-~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCC-CCcc-c-ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence 35666666665 3432 2 22333466666666665 44555566666666666666665 233 355666666666666
Q ss_pred Ccccccc-cccccCCCCCCEEECCCCCCC
Q 041374 454 NSVTGSI-PLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 454 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 481 (513)
|++.+.. ...+..+++|+.|++++|+++
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 6665322 234555666666666666654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.49 E-value=1.8e-14 Score=136.52 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=19.4
Q ss_pred cCCCCCCEEeCCCCccCcc----CCccccCCCCCCEEeCCCCcccc
Q 041374 417 GNLKNLVQLDLSENHFSIE----IPVSLSACTTLEYLYMEGNSVTG 458 (513)
Q Consensus 417 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~ 458 (513)
..+++|+.|++++|.+... +...+..+++|++|+|++|.+++
T Consensus 212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~ 257 (344)
T d2ca6a1 212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 257 (344)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred cchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence 3444555555555544322 22233444555555555555543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.5e-13 Score=108.48 Aligned_cols=41 Identities=34% Similarity=0.613 Sum_probs=20.3
Q ss_pred cCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCC
Q 041374 127 IGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFS 168 (513)
Q Consensus 127 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~ 168 (513)
++.+++|++|++++|.++. +|..++.+++|++|++++|.++
T Consensus 16 l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~ 56 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 56 (124)
T ss_dssp GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC
T ss_pred cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc
Confidence 4444555555555555543 3444445555555555555544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.44 E-value=2.1e-15 Score=143.15 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=96.5
Q ss_pred CCCCCCCEEEcccccCCccC----cccccCCCCCcEEeCCCCcCcccCCc------------cccCCCCCCCEEEccCCc
Q 041374 152 GQLRSLSFLDISENAFSGMF----HSSIFNISSLELIYPLENRLEGSLPV------------NIGFSLPNLEDLSVRQNN 215 (513)
Q Consensus 152 ~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~lp~------------~~~~~l~~L~~L~l~~n~ 215 (513)
...++|++|++++|.++... ...+...++|+.|++++|.+...-.. ......+.|+.+.+++|.
T Consensus 90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (344)
T d2ca6a1 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169 (344)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence 34455555555555554332 12233445555555555544311000 001134556666666666
Q ss_pred cccc----CcccccCCCCCCeeeCcccccccc-----ccccccCCCCCcEEEcCCCCCCCCCCCCchhhcccCCCccccc
Q 041374 216 YTGS----LPHSLSNASNLQLLDLSLNHFSGQ-----VKIDFNRLPNLFRLNFGKNNLGTGAIGDLDFIAHLTNCSKLEA 286 (513)
Q Consensus 216 l~~~----~~~~l~~l~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~l~~~~~L~~ 286 (513)
++.. +...+...+.|++|++++|.+... ....+...++|+.|++++|.++..... .....+..+++|+.
T Consensus 170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~--~L~~~l~~~~~L~~ 247 (344)
T d2ca6a1 170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS--ALAIALKSWPNLRE 247 (344)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH--HHHHHGGGCTTCCE
T ss_pred ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc--cccccccccccchh
Confidence 5422 222344556666777766666432 223345566677777766665432111 12244556667777
Q ss_pred ccccccccCCcCchhhhc----c-ccccceEEeccccceec----CCcccc-CCCCCCEEeccCCcCcc
Q 041374 287 FGLDTNIFGGVLPLSIAN----L-SSTIILFTMGLNQIYGT----IPPEVK-NLVNLNGFGLEYNQLTG 345 (513)
Q Consensus 287 L~l~~n~~~~~~~~~~~~----~-~~~l~~l~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~n~~~~ 345 (513)
|++++|.+++.....++. . ...++.+++++|++... +...+. ..++|++|++++|.+..
T Consensus 248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 777777665543333321 1 12356666666665432 222222 45677888888887763
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=9.1e-12 Score=102.44 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCcccCCCCCCCEEEeecC-cccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccC
Q 041374 123 LPPSIGNLSALQNIDIAGN-RLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGF 201 (513)
Q Consensus 123 l~~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~ 201 (513)
.|..+..+++|++|+++++ .++...+..|.++++|+.|++++|+++.+.+..|..+++|++|++++|+++ .+|..++
T Consensus 23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~- 100 (156)
T d2ifga3 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTV- 100 (156)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTT-
T ss_pred CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhh-
Confidence 3444555566666666544 355545555666666666666666666666666666666666666666666 6666666
Q ss_pred CCCCCCEEEccCCccc
Q 041374 202 SLPNLEDLSVRQNNYT 217 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~ 217 (513)
...+|++|++++|.+.
T Consensus 101 ~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 101 QGLSLQELVLSGNPLH 116 (156)
T ss_dssp CSCCCCEEECCSSCCC
T ss_pred ccccccccccCCCccc
Confidence 3446778888877764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.6e-11 Score=98.79 Aligned_cols=110 Identities=17% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCCCCCEEecccCcCcccChHHHHhhhcccceEEccCC-cCcccCCccccCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 041374 369 NCQNLMLLSVSNNKLTGALPPQILGILTLSILLDLSGN-LLTGSIPTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLE 447 (513)
Q Consensus 369 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 447 (513)
.+...+.++.+++.+. +.|..+.... .+++|++++| .++...+..|.++++|+.|++++|++....+.+|..+++|+
T Consensus 6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 83 (156)
T d2ifga3 6 CPHGSSGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (156)
T ss_dssp CCSSSSCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CcCCCCeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence 3455677888888776 5666554443 4488899766 47766667788899999999999999877778889999999
Q ss_pred EEeCCCCcccccccccccCCCCCCEEECCCCCCC
Q 041374 448 YLYMEGNSVTGSIPLALNTLKSIKELDLSRNNLS 481 (513)
Q Consensus 448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 481 (513)
+|+|++|+++ .+|...-....|+.|+|++|++.
T Consensus 84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence 9999999998 44444334457999999999884
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.18 E-value=1.5e-13 Score=118.43 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=58.5
Q ss_pred CCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccCcccccCCCCCcEEeCCCCcCcccCCccccC
Q 041374 122 QLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMFHSSIFNISSLELIYPLENRLEGSLPVNIGF 201 (513)
Q Consensus 122 ~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~ 201 (513)
.++.++..+++|++|++++|.++. ++ .+..+++|++|++++|.++ .+|....
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-------------------------~i~~~~~- 90 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-------------------------KIENLDA- 90 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-------------------------SCSSHHH-
T ss_pred hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-------------------------ccccccc-
Confidence 344455566666666666666554 22 3555566666666666554 3332221
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCeeeCcccccccccc-ccccCCCCCcEEEcCCCCCC
Q 041374 202 SLPNLEDLSVRQNNYTGSLPHSLSNASNLQLLDLSLNHFSGQVK-IDFNRLPNLFRLNFGKNNLG 265 (513)
Q Consensus 202 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~ 265 (513)
.+++|++|++++|.++. ++ .+..+++|++|++++|++..... ..+..+++|+.|++++|.+.
T Consensus 91 ~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccccccccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 23345555555555552 22 34455555666666555543211 23455556666666655543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.17 E-value=7.6e-14 Score=120.27 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=80.0
Q ss_pred cCccccCCCCCCEEeCCCCCCcccCCCCCCCCCcccCCCCCCCEEEeecCcccccCccccCCCCCCCEEEcccccCCccC
Q 041374 92 LSPYVGNLSFLRFVNLASNNLHGEIPYEHGQLPPSIGNLSALQNIDIAGNRLHSRVPESLGQLRSLSFLDISENAFSGMF 171 (513)
Q Consensus 92 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 171 (513)
++..+..+++|++|++++|.|+ .++ .+.++++|++|++++|.++. +|..+..+++|++|++++|.++..
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~--------~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l- 108 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIE--------KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL- 108 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEES--------CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH-
T ss_pred hhhHHhcccccceeECcccCCC--------Ccc-cccCCccccChhhccccccc-cccccccccccccccccccccccc-
Confidence 4457888999999999999987 454 58889999999999999976 555555567899999999998754
Q ss_pred cccccCCCCCcEEeCCCCcCcccCCc-cccCCCCCCCEEEccCCccc
Q 041374 172 HSSIFNISSLELIYPLENRLEGSLPV-NIGFSLPNLEDLSVRQNNYT 217 (513)
Q Consensus 172 ~~~~~~l~~L~~L~l~~n~l~~~lp~-~~~~~l~~L~~L~l~~n~l~ 217 (513)
..+..+++|+.|++++|++. .++. .....+++|++|++++|.+.
T Consensus 109 -~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 109 -SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred -ccccccccccccccccchhc-cccccccccCCCccceeecCCCccc
Confidence 33555666666666666665 2321 11124556666666665544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.4e-08 Score=81.21 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=32.7
Q ss_pred cCCCCCCCEEEcccccCCccC--cccccCCCCCcEEeCCCCcCcccCCccccCCCCCCCEEEccCCccc
Q 041374 151 LGQLRSLSFLDISENAFSGMF--HSSIFNISSLELIYPLENRLEGSLPVNIGFSLPNLEDLSVRQNNYT 217 (513)
Q Consensus 151 l~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~ 217 (513)
+..+++|++|++++|+++... +..+..+++|+.|++++|.+. .++........+|+++++++|.+.
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence 344566666666666665442 233444555555555555554 333211112334555555555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.9e-07 Score=76.50 Aligned_cols=60 Identities=32% Similarity=0.329 Sum_probs=24.5
Q ss_pred cceEEccCCcCcccC--CccccCCCCCCEEeCCCCccCccCCccccCCCCCCEEeCCCCccc
Q 041374 398 SILLDLSGNLLTGSI--PTEVGNLKNLVQLDLSENHFSIEIPVSLSACTTLEYLYMEGNSVT 457 (513)
Q Consensus 398 l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 457 (513)
|++|++++|+++..- +..+..+++|+.|++++|.+....+..+.....|+.|++++|++.
T Consensus 67 L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 67 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp CCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred CCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 344555555444211 122333445555555555444221112222334444555555444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.86 E-value=9.2e-06 Score=66.52 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=39.9
Q ss_pred CCCCCCEEecccC-cCcccChHHHHh---hhcccceEEccCCcCcccCC----ccccCCCCCCEEeCCCCccCccC----
Q 041374 369 NCQNLMLLSVSNN-KLTGALPPQILG---ILTLSILLDLSGNLLTGSIP----TEVGNLKNLVQLDLSENHFSIEI---- 436 (513)
Q Consensus 369 ~~~~L~~L~ls~n-~l~~~~p~~~~~---~~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~---- 436 (513)
+.++|++|+|+++ .+..+.-..++. ....+++|++++|.+.+... ..+...+.|++|++++|.+.+..
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4577888888764 343222222211 12224555555555543211 12223455555555555554322
Q ss_pred CccccCCCCCCEEeCCCCc
Q 041374 437 PVSLSACTTLEYLYMEGNS 455 (513)
Q Consensus 437 ~~~~~~l~~L~~L~L~~n~ 455 (513)
...+...++|++|++++|.
T Consensus 93 ~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhCCcCCEEECCCCc
Confidence 1233444555555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.74 E-value=1.4e-05 Score=65.38 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=61.0
Q ss_pred cccceEEccCC-cCccc----CCccccCCCCCCEEeCCCCccCccC----CccccCCCCCCEEeCCCCccccc----ccc
Q 041374 396 TLSILLDLSGN-LLTGS----IPTEVGNLKNLVQLDLSENHFSIEI----PVSLSACTTLEYLYMEGNSVTGS----IPL 462 (513)
Q Consensus 396 ~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~ 462 (513)
+.+++|+++++ .++.. +...+...+.|++|++++|.+.... ...+...+.|++|+|++|.+++. +-.
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 44577777763 35432 2234455666777777777665332 23344556777777777776643 233
Q ss_pred cccCCCCCCEEECCCCCCCcc-------cchhhhcccCc-eEEccCCc
Q 041374 463 ALNTLKSIKELDLSRNNLSGH-------IPEFLENLSFN-KMNETIND 502 (513)
Q Consensus 463 ~~~~l~~L~~L~l~~n~l~~~-------~p~~l~~l~~l-~l~l~~n~ 502 (513)
.+...+.|++|++++|.+... +...+..-+.+ .++++.+.
T Consensus 95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 445556677777777654421 33444555666 67766654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.18 E-value=9.7e-05 Score=60.13 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=47.5
Q ss_pred CCCCCEEecccC-cCcccChHHHHh---hhcccceEEccCCcCcccCC----ccccCCCCCCEEeCCCCccCccC----C
Q 041374 370 CQNLMLLSVSNN-KLTGALPPQILG---ILTLSILLDLSGNLLTGSIP----TEVGNLKNLVQLDLSENHFSIEI----P 437 (513)
Q Consensus 370 ~~~L~~L~ls~n-~l~~~~p~~~~~---~~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~----~ 437 (513)
.++|++|+++++ .++...-..++. ..+.+++|++++|.++.... ..+...+.++.+++++|.+.... .
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~ 95 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 95 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence 456666666652 343222212221 12223445555554432211 12233455555666555554321 2
Q ss_pred ccccCCCCCCEEeCC--CCcccc----cccccccCCCCCCEEECCCCC
Q 041374 438 VSLSACTTLEYLYME--GNSVTG----SIPLALNTLKSIKELDLSRNN 479 (513)
Q Consensus 438 ~~~~~l~~L~~L~L~--~n~l~~----~~~~~~~~l~~L~~L~l~~n~ 479 (513)
..+...++|+.++|+ +|.+.. .+...+...+.|+.|+++.+.
T Consensus 96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 334445555554442 344432 233334445556666655443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.14 E-value=0.00014 Score=59.12 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=81.6
Q ss_pred hhhcccceEEccC-CcCccc----CCccccCCCCCCEEeCCCCccCccCC----ccccCCCCCCEEeCCCCccccc----
Q 041374 393 GILTLSILLDLSG-NLLTGS----IPTEVGNLKNLVQLDLSENHFSIEIP----VSLSACTTLEYLYMEGNSVTGS---- 459 (513)
Q Consensus 393 ~~~~~l~~L~l~~-n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~---- 459 (513)
...+.+++|++++ +.++.. +...+...+.|++|++++|.+..... ..+...++++.+++++|.+...
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 3345569999998 457543 33445678999999999999875433 3456779999999999998754
Q ss_pred ccccccCCCCCCEEECC--CCCCCc----ccchhhhcccCc-eEEccCCccc
Q 041374 460 IPLALNTLKSIKELDLS--RNNLSG----HIPEFLENLSFN-KMNETINDFC 504 (513)
Q Consensus 460 ~~~~~~~l~~L~~L~l~--~n~l~~----~~p~~l~~l~~l-~l~l~~n~l~ 504 (513)
+...+...+.|+.++|+ +|.+.. .+.+.++..+.+ +++++.+...
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~ 145 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 145 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence 34566778899987665 566754 345567788888 9999887643
|