Citrus Sinensis ID: 041379

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
PLRRPIVKSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF
Secondary Structure (PSIPRED)
cccccEEEEccccccccccEEEEEEEccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccEEEEEEcccccccEEEEEEEccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccc
Coil and Loop (DISEMBL)
plrrpivksfddrtrerpnghcLLVSyqhlmptrytlDVDLKVVVTAdslqskdkkMIACKETKKRLEERFKTSKNRWFFTKLRF
Flexible Loop (DISEMBL)
plrrpivksfddrtrerpnghCLLVSYQHLMPTRYTLDVDLKVVVtadslqskdkkmiacketkkrleerfktsknrwfftklrf
Low Complexity Region (SEG)
PLRRPIVKSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF
Disordered region (IsUnstruct)
*******************GHCLLVSYQHLMPTRYTLDVDLKVVVTADSL**************************RWFFT****
Disordered Region (DISOPRED)
**RR*I**********RPNGHCLLVSYQHLMPTRYTLDVDLKVVVTADS**********CKETKKRLEERFKTSKNRWFFTKLRF
Disordered Region (DISEMBL)
PLRRPIVKSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF
Disordered Region (DISPRO)
PLRRPIVKSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PLRRPIVKSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVDLKVVVTADSxxxxxxxxxxxxxxxxxxxxxFKTSKNRWFFTKLRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q05462	135	60S ribosomal protein L27	N/A	no	0.941	0.592	0.585	3e-27
P51419	135	60S ribosomal protein L27	yes	no	0.941	0.592	0.567	4e-27
Q8LCL3	135	60S ribosomal protein L27	yes	no	0.941	0.592	0.549	3e-25
Q9SKX8	135	60S ribosomal protein L27	no	no	0.941	0.592	0.513	4e-24
P41101	138	60S ribosomal protein L27	N/A	no	0.929	0.572	0.495	1e-20
Q02984	134	60S ribosomal protein L27	N/A	no	0.929	0.589	0.468	5e-18
P61359	136	60S ribosomal protein L27	N/A	no	0.941	0.588	0.375	3e-12
Q7ZV82	136	60S ribosomal protein L27	yes	no	0.941	0.588	0.375	3e-12
P61354	136	60S ribosomal protein L27	yes	no	0.941	0.588	0.375	3e-12
A1XQU5	136	60S ribosomal protein L27	yes	no	0.941	0.588	0.375	3e-12

>sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 69/111 (62%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IVK+FDD TRE+P GHCL                               LV+YQHLMPTR
Sbjct: 25  IVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK  V  D LQSKDKK+ A KETKK LEERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135

Pisum sativum (taxid: 3888)

>sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 69/111 (62%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           I+KSFDD  R+RP GHCL                               LV+YQHLMPTR
Sbjct: 25  IIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK V T D+LQSKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 68/111 (61%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           I+KSFDD T +R  GHCL                               LV+YQHLMPTR
Sbjct: 25  IIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK V T D+L+SKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 68/111 (61%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
           IVKSFDD T E+  GHCL+                               ++YQH+MPTR
Sbjct: 25  IVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLD+DLK VV+AD++ SKDKK+ A KE K + EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135

Arabidopsis thaliana (taxid: 3702)

>sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 67/115 (58%), Gaps = 36/115 (31%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IV++FD+ TR+RP GHCL                               LV+Y H+MPTR
Sbjct: 25  IVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTR 84

Query: 35  YTLDVDLKVVV----TADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLD DLK VV     AD LQ++DKK+ A + TK RL ERFKT KNRWFFTKLRF
Sbjct: 85  YTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138

Solanum tuberosum (taxid: 4113)

>sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 61/111 (54%), Gaps = 32/111 (28%)

Query: 6   IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
           IV++FDD T  RP GH L+V                                Y HLMPTR
Sbjct: 25  IVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVD K V  A++ ++  KK+ A KE KK LEE+FKT KNRWFFTKLRF
Sbjct: 85  YTLDVDFKGVA-AEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134

Pyrobotrys stellata (taxid: 3064)

>sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)

Query: 6   IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
           IVK+ DD T +RP  H L+                                 Y HLMPTR
Sbjct: 25  IVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTR 84

Query: 35  YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           Y++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct: 85  YSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136

Hippocampus comes (taxid: 109280)

>sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)

Query: 6   IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
           IVK+ DD T +RP  H L+                                 Y HLMPTR
Sbjct: 25  IVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTR 84

Query: 35  YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           Y++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct: 85  YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

Danio rerio (taxid: 7955)

>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)

Query: 6   IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
           IVK+ DD T +RP  H L+                                 Y HLMPTR
Sbjct: 25  IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84

Query: 35  YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           Y++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct: 85  YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

Rattus norvegicus (taxid: 10116)

>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 32/112 (28%)

Query: 6   IVKSFDDRTRERPNGHCLLVS-------------------------------YQHLMPTR 34
           IVK+ DD T +RP  H L+                                 Y HLMPTR
Sbjct: 25  IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTR 84

Query: 35  YTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           Y++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct: 85  YSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
118483156	135	unknown [Populus trichocarpa]	0.941	0.592	0.594	6e-27
224060153	135	predicted protein [Populus trichocarpa]	0.941	0.592	0.594	6e-27
357445373	135	60S ribosomal protein L27 [Medicago trun	0.941	0.592	0.594	3e-26
224139584	135	predicted protein [Populus trichocarpa]	0.941	0.592	0.585	3e-26
356556157	135	PREDICTED: 60S ribosomal protein L27-lik	0.941	0.592	0.585	4e-26
225423704	135	PREDICTED: 60S ribosomal protein L27-3 i	0.941	0.592	0.576	5e-26
449460012	135	PREDICTED: 60S ribosomal protein L27-lik	0.941	0.592	0.576	6e-26
449460010	135	PREDICTED: 60S ribosomal protein L27-lik	0.941	0.592	0.585	6e-26
217075660	135	unknown [Medicago truncatula]	0.941	0.592	0.585	1e-25
388519707	135	unknown [Medicago truncatula]	0.941	0.592	0.585	1e-25

>gi|118483156|gb|ABK93484.1| unknown [Populus trichocarpa]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 71/111 (63%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IV+SFDD TR+RP GHCL                               LV+YQHLMPTR
Sbjct: 25  IVRSFDDGTRDRPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKCFIKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVTAD L +KDKK+ ACKETK R EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDVVTADYLSTKDKKITACKETKARFEERFKTGKNRWFFTKLRF 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060153|ref|XP_002300063.1| predicted protein [Populus trichocarpa] gi|118481395|gb|ABK92640.1| unknown [Populus trichocarpa] gi|118483186|gb|ABK93497.1| unknown [Populus trichocarpa] gi|118484849|gb|ABK94291.1| unknown [Populus trichocarpa] gi|222847321|gb|EEE84868.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 71/111 (63%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IV+SFDD TR+RP GHCL                               LV+YQHLMPTR
Sbjct: 25  IVRSFDDGTRDRPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKCFIKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVTAD L +KDKK+ ACKETK R EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDVVTADCLSTKDKKITACKETKARFEERFKTGKNRWFFTKLRF 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445373|ref|XP_003592964.1| 60S ribosomal protein L27 [Medicago truncatula] gi|357445451|ref|XP_003593003.1| 60S ribosomal protein L27 [Medicago truncatula] gi|217071440|gb|ACJ84080.1| unknown [Medicago truncatula] gi|355482012|gb|AES63215.1| 60S ribosomal protein L27 [Medicago truncatula] gi|355482051|gb|AES63254.1| 60S ribosomal protein L27 [Medicago truncatula] gi|388490800|gb|AFK33466.1| unknown [Medicago truncatula]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 69/111 (62%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IVK+FDD TRER  GHCL                               LV+YQHLMPTR
Sbjct: 25  IVKNFDDGTRERAYGHCLVAGIKKYPAKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVT D LQSKDKK+ A KE KKR EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139584|ref|XP_002323180.1| predicted protein [Populus trichocarpa] gi|118483861|gb|ABK93821.1| unknown [Populus trichocarpa] gi|222867810|gb|EEF04941.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 70/111 (63%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IVK FDD TR+RP GHCL                               LV+YQHLMPTR
Sbjct: 25  IVKHFDDGTRDRPYGHCLVAGIKKYPSKVIKKDSTKKTAKKSRVKCFIKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK  VTADSL +KDKK+ ACK+TK R EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDAVTADSLTTKDKKVTACKDTKARFEERFKTGKNRWFFTKLRF 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556157|ref|XP_003546393.1| PREDICTED: 60S ribosomal protein L27-like [Glycine max]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 71/111 (63%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IV++FD+ TRERP GHCL                               LV+YQHLMPTR
Sbjct: 25  IVRTFDEGTRERPYGHCLVAGIKKYPAKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK  VT D LQ+KDKK+ A KETKKRLEERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDAVTPDVLQAKDKKVTALKETKKRLEERFKTGKNRWFFTKLRF 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423704|ref|XP_002277425.1| PREDICTED: 60S ribosomal protein L27-3 isoform 1 [Vitis vinifera]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 70/111 (63%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IV+SFDD TR+RP GHCL                               LV+Y HLMPTR
Sbjct: 25  IVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAKKTAKKSRVKAFIKLVNYNHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVT D+LQS+DKK+ A KETK R EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDVVTVDALQSRDKKVTAAKETKARFEERFKTGKNRWFFTKLRF 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460012|ref|XP_004147740.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] gi|449519545|ref|XP_004166795.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 71/111 (63%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           I+++FDD TR+R  GHCL                               LV+Y+HLMPTR
Sbjct: 25  IIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVT DSLQSKDKK+ A KETKKR EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460010|ref|XP_004147739.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] gi|449519547|ref|XP_004166796.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 71/111 (63%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IV++FDD TR+R  GHCL                               LV+Y+HLMPTR
Sbjct: 25  IVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFVKLVNYRHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVT DSLQSKDKK+ A KETKKR EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075660|gb|ACJ86190.1| unknown [Medicago truncatula]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 69/111 (62%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IVK+FDD TR+R  GHCL                               LV+YQHLMPTR
Sbjct: 25  IVKNFDDGTRDRAYGHCLVAGIKKYPAKVIKKDSAKKTAKKSRVEAFVKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVT D LQSKDKK+ A KE KKR EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519707|gb|AFK47915.1| unknown [Medicago truncatula]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 69/111 (62%), Gaps = 31/111 (27%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IVK+FDD TR+R  GHCL                               LV+YQHLMPTR
Sbjct: 25  IVKNFDDGTRDRAYGHCLVAGIKKYPAKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK VVT D LQSKDKK+ A KE KKR EERFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
TAIR|locus:2129575	135	AT4G15000 [Arabidopsis thalian	0.941	0.592	0.658	7.8e-23
TAIR|locus:2090434	135	AT3G22230 [Arabidopsis thalian	0.941	0.592	0.646	2.1e-22
TAIR|locus:2045467	135	AT2G32220 [Arabidopsis thalian	0.941	0.592	0.585	4.9e-21
ASPGD|ASPL0000016741	135	AN4222 [Emericella nidulans (t	0.952	0.6	0.476	3.8e-14
WB|WBGene00004441	136	rpl-27 [Caenorhabditis elegans	0.894	0.558	0.455	1e-13
POMBASE|SPBC685.07c	136	rpl2701 "60S ribosomal protein	0.835	0.522	0.445	2.4e-12
SGD|S000001052	136	RPL27A "Ribosomal 60S subunit	0.894	0.558	0.443	2.4e-12
SGD|S000002879	136	RPL27B "Ribosomal 60S subunit	0.894	0.558	0.443	2.4e-12
UNIPROTKB|G4ML54	135	MGG_06693 "60S ribosomal prote	0.729	0.459	0.523	3.1e-12
UNIPROTKB|P61355	136	RPL27 "60S ribosomal protein L	0.705	0.441	0.524	3.9e-12

TAIR|locus:2129575 AT4G15000 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 54/82 (65%), Positives = 61/82 (74%)

Query:     6 IVKSFDDRTRERPNGHCL--LVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKET 63
             I K    +T ++    C   LV+YQHLMPTRYTLDVDLK V T D+LQSKDKK+ A KE 
Sbjct:    54 IRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEA 113

Query:    64 KKRLEERFKTSKNRWFFTKLRF 85
             K +LEERFKT KNRWFFTKLRF
Sbjct:   114 KAKLEERFKTGKNRWFFTKLRF 135

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2090434 AT3G22230 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 53/82 (64%), Positives = 61/82 (74%)

Query:     6 IVKSFDDRTRERPNGHCL--LVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKET 63
             I K    +T ++    C   LV+YQHLMPTRYTLDVDLK V T D+L+SKDKK+ A KE 
Sbjct:    54 IRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEA 113

Query:    64 KKRLEERFKTSKNRWFFTKLRF 85
             K +LEERFKT KNRWFFTKLRF
Sbjct:   114 KAKLEERFKTGKNRWFFTKLRF 135

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2045467 AT2G32220 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 48/82 (58%), Positives = 61/82 (74%)

Query:     6 IVKSFDDRTRERPNGHCL--LVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKET 63
             I K    +T ++    C   +++YQH+MPTRYTLD+DLK VV+AD++ SKDKK+ A KE 
Sbjct:    54 IRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEA 113

Query:    64 KKRLEERFKTSKNRWFFTKLRF 85
             K + EERFKT KNRWFFTKLRF
Sbjct:   114 KAKFEERFKTGKNRWFFTKLRF 135

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

ASPGD|ASPL0000016741 AN4222 [Emericella nidulans (taxid:162425)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query:     3 RRPIVKSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACK 61
             RR   K+ + R+R +P     +V+Y HLMPTRYTL+++ LK  VTAD+ +   ++  A K
Sbjct:    54 RRMGKKTVEKRSRIKP--FIKVVNYNHLMPTRYTLELEGLKGTVTADTFKEVSQREEAKK 111

Query:    62 ETKKRLEERFKTSKNRWFFTKLRF 85
               KK LE+R+ + KNRWFFT LRF
Sbjct:   112 TIKKALEDRYTSGKNRWFFTPLRF 135

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

WB|WBGene00004441 rpl-27 [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/79 (45%), Positives = 51/79 (64%)

Query:     8 KSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKR 66
             K  + R + +P     +VSY HL+PTRY++DV   K  +  ++L++  KK  A  E K +
Sbjct:    60 KKIEKRNKLKP--FLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSK 117

Query:    67 LEERFKTSKNRWFFTKLRF 85
              EER+KT KN+WFFTKLRF
Sbjct:   118 FEERYKTGKNKWFFTKLRF 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

POMBASE|SPBC685.07c rpl2701 "60S ribosomal protein L27" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 33/74 (44%), Positives = 50/74 (67%)

Query:    13 RTRERPNGHCLLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERF 71
             R+R +P     +V+Y HLMPTRY L++D LK ++TAD+ +   ++  A K  KK  EE++
Sbjct:    65 RSRVKP--FIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKY 122

Query:    72 KTSKNRWFFTKLRF 85
             ++ K+ WFFT LRF
Sbjct:   123 QSGKSAWFFTPLRF 136

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

SGD|S000001052 RPL27A "Ribosomal 60S subunit protein L27A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/79 (44%), Positives = 50/79 (63%)

Query:     8 KSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKR 66
             K    RT+ +P     +V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK 
Sbjct:    60 KKVAKRTKIKP--FIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKA 117

Query:    67 LEERFKTSKNRWFFTKLRF 85
              EER +  KN+WFF+KLRF
Sbjct:   118 FEERHQAGKNQWFFSKLRF 136

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=TAS

SGD|S000002879 RPL27B "Ribosomal 60S subunit protein L27B" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 35/79 (44%), Positives = 50/79 (63%)

Query:     8 KSFDDRTRERPNGHCLLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKR 66
             K    RT+ +P     +V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK 
Sbjct:    60 KKVAKRTKIKP--FIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKA 117

Query:    67 LEERFKTSKNRWFFTKLRF 85
              EER +  KN+WFF+KLRF
Sbjct:   118 FEERHQAGKNQWFFSKLRF 136

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005840 "ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

UNIPROTKB|G4ML54 MGG_06693 "60S ribosomal protein L27-A" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query:    24 LVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTK 82
             +V+Y HLMPTRYTL+++ LK  VT D+ +   ++  A K  KK LEER+ + KNRWFFT 
Sbjct:    73 VVNYNHLMPTRYTLELEGLKGSVTNDTFKEVSQREDAKKNVKKVLEERYTSGKNRWFFTP 132

Query:    83 LRF 85
             L+F
Sbjct:   133 LKF 135

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|P61355 RPL27 "60S ribosomal protein L27" [Gallus gallus (taxid:9031)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 32/61 (52%), Positives = 41/61 (67%)

Query:    26 SYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 84
             +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLR
Sbjct:    76 NYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLR 135

Query:    85 F 85
             F
Sbjct:   136 F 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	85
pfam01777	85	pfam01777, Ribosomal_L27e, Ribosomal L27e protein	3e-22
PTZ00471	134	PTZ00471, PTZ00471, 60S ribosomal protein L27; Pro	2e-12
cd06090	83	cd06090, KOW_RPL27, KOW motif of eukaryotic Riboso	2e-05

>gnl|CDD|201966 pfam01777, Ribosomal_L27e, Ribosomal L27e protein family

 Score = 81.5 bits (202), Expect = 3e-22
 Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 25 VSYQHLMPTRYTLDV-DLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKL 83
          V+Y HLMPTRYT+DV DLK VV+ D+L+   K+  A KE KK+ EER+KT KNRWFFTKL
Sbjct: 24 VNYNHLMPTRYTVDVEDLKKVVSKDALKDPSKRKEARKEVKKKFEERYKTGKNRWFFTKL 83

Query: 84 RF 85
          RF
Sbjct: 84 RF 85

The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. Length = 85

>gnl|CDD|240428 PTZ00471, PTZ00471, 60S ribosomal protein L27; Provisional

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 32/111 (28%)

Query: 6   IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
           IV++FD  ++ERP GH L+                               V+++H +PTR
Sbjct: 25  IVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFLPTR 84

Query: 35  YTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           Y +D+  ++    +   +  KK  + +  KK  + R+    +RWFF +LRF
Sbjct: 85  YNMDMSKELRGRINVSDAS-KKARSKQLVKKLFQARYNAGSSRWFFQRLRF 134

Length = 134

>gnl|CDD|240514 cd06090, KOW_RPL27, KOW motif of eukaryotic Ribosomal Protein L27

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 31/64 (48%)

Query: 6  IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
          IVK+ D+ T++RP GH L+                               V+Y HLMPTR
Sbjct: 20 IVKNNDEGTKDRPYGHALVAGIDRYPRKVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTR 79

Query: 35 YTLD 38
          Y++D
Sbjct: 80 YSVD 83

RPL27e has a KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
PTZ00471	134	60S ribosomal protein L27; Provisional	100.0
KOG3418	136	consensus 60S ribosomal protein L27 [Translation,	100.0
PF01777	85	Ribosomal_L27e: Ribosomal L27e protein family; Int	99.98
COG2163	125	RPL14A Ribosomal protein L14E/L6E/L27E [Translatio	98.68
PRK04333	84	50S ribosomal protein L14e; Validated	96.82
PTZ00065	130	60S ribosomal protein L14; Provisional	95.8

>PTZ00471 60S ribosomal protein L27; Provisional

Probab=100.00  E-value=2.3e-48  Score=269.47  Aligned_cols=84  Identities=36%  Similarity=0.688  Sum_probs=83.1

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeeeeccccccccccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTLDVDLKVVVTADS   49 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~vdi~lk~~v~~d~   49 (85)
                      |+||||||++||||+||||||||                               +|||||||||||+||++ +++|++|+
T Consensus        20 GkKaVivk~~ddgt~drpy~halVaGIdryP~kVtk~M~kkki~KRskiK~FvK~vNynHlmPTRY~vdi~-~~~v~~~~   98 (134)
T PTZ00471         20 GRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFLPTRYNMDMS-KELRGRIN   98 (134)
T ss_pred             CcEEEEEeecCCCCccCcCceEEEEeecccchhhhhhccHHHHHHHhccccceEEEeeceecccceeeecc-ccccCHHH
Confidence            89999999999999999999999                               89999999999999999 89999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379           50 LQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF   85 (85)
Q Consensus        50 ~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF   85 (85)
                      |+||++|++|+++++..|||+|++|||+|||+||||
T Consensus        99 ~~d~~~k~~ar~~~k~~feer~k~gKn~wFF~kLrF  134 (134)
T PTZ00471         99 VSDASKKARSKQLVKKLFQARYNAGSSRWFFQRLRF  134 (134)
T ss_pred             hhChHHHHHHHHHHHHHHHHHHhcCccceeeeeccC
Confidence            999999999999999999999999999999999998

>KOG3418 consensus 60S ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.2e-44  Score=246.61  Aligned_cols=85  Identities=54%  Similarity=0.887  Sum_probs=83.9

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeeeecc-cccccccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTLDVD-LKVVVTAD   48 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~vdi~-lk~~v~~d   48 (85)
                      ||||||||++||||+|+||||||                               +|||||||||||+||++ +++++++|
T Consensus        20 g~KaVivk~~Ddg~~d~p~~h~LvAgi~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~hlMptRy~vdv~~~k~v~~kd   99 (136)
T KOG3418|consen   20 GKKAVIVKNIDDGTEDKPYGHALVAGVDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYNHLMPTRYTVDVLALKTVINKD   99 (136)
T ss_pred             CccEEEEeecccCCccCCCceeeeeehhhccccccccccchhhhhcccceeEEEEeecccccCcceEEeehhhhccccHH
Confidence            89999999999999999999999                               99999999999999999 59999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379           49 SLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF   85 (85)
Q Consensus        49 ~~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF   85 (85)
                      ++++|++|..|+++++..|||||++|+|+|||++|||
T Consensus       100 v~~~p~~K~~a~~~~k~kfeer~k~gkn~wff~~lrf  136 (136)
T KOG3418|consen  100 VFRDPVKKGTAIKEAKVKFEERYKTGKNKWFFTKLRF  136 (136)
T ss_pred             hhhChhhhhhhhhHHHHHHHHHHHhCccccccccccC
Confidence            9999999999999999999999999999999999998

>PF01777 Ribosomal_L27e: Ribosomal L27e protein family; InterPro: IPR001141 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.98  E-value=1.4e-35  Score=192.29  Aligned_cols=62  Identities=58%  Similarity=0.991  Sum_probs=53.5

Q ss_pred             Eeecceeeeeeeeeec-ccccccccccccChHHHHHHHHHHHHHHHHHhcCCCceEeeeecCC
Q 041379           24 LVSYQHLMPTRYTLDV-DLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF   85 (85)
Q Consensus        24 vvNynHlmPTRY~vdi-~lk~~v~~d~~~d~~~k~~a~ke~k~~feeryk~gknkwfF~KLrF   85 (85)
                      +|||||||||||+||+ +++++|++|+++||++|++|+++++..|||+|++|||+|||+||||
T Consensus        23 ~iNynHlmPTRY~vd~~~~k~~v~~~~l~~~~~kk~a~k~~k~~feer~k~gKnkwFF~KLrF   85 (85)
T PF01777_consen   23 VINYNHLMPTRYSVDIPDDKTVVNKDALKDPSKKKKAKKEIKKKFEERYKTGKNKWFFQKLRF   85 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             EeeccceEeeeeeeechhhhcccCHHHHhChHHHHHHHHHHHHHHHHHhccCCCcEEeeeccC
Confidence            7999999999999999 4699999999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein, L27 is found in fungi, plants, algae and vertebrates [, ]. The family has a specific signature at the C terminus.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_a 4A1B_N 4A19_N 4A18_N 4A1D_N 3IZR_a.

>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=7.8e-09  Score=71.34  Aligned_cols=74  Identities=23%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE-------Eeecceeeeeeeeeecc------------------------ccccccccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL-------LVSYQHLMPTRYTLDVD------------------------LKVVVTADS   49 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal-------vvNynHlmPTRY~vdi~------------------------lk~~v~~d~   49 (85)
                      |+++|||+.+||+ .-.+.||++       .+|++|++||--.++++                        - +.+..+.
T Consensus        20 Gkk~VIv~~iDd~-~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a~~~~~~~~~~~-~~~~~k~   97 (125)
T COG2163          20 GKKVVIVKIIDDN-FVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAAGVLAKLDKSA-KNLETKK   97 (125)
T ss_pred             CceEEEEEEccCC-EEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHhhhhhccccccc-hhhhhhh
Confidence            8999999999998 667777776       67777777776655442                        1 1233444


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCc
Q 041379           50 LQSKDKKMIACKETKKRLEERFKTSKN   76 (85)
Q Consensus        50 ~~d~~~k~~a~ke~k~~feeryk~gkn   76 (85)
                      ++.+..+-+..+..+..++|+|..|++
T Consensus        98 ~~~~~~~~~r~~~~k~~~~~~~~~~k~  124 (125)
T COG2163          98 VREPLTDAERFKVMKLVKEERLQVGKA  124 (125)
T ss_pred             hhcccchHHHHHHHHHHHHHHhhhhcc
Confidence            566677777777889999999999886

>PRK04333 50S ribosomal protein L14e; Validated

Probab=96.82  E-value=0.002  Score=41.65  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=29.7

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE------------Eeecceeeeeeeeeecc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL------------LVSYQHLMPTRYTLDVD   40 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal------------vvNynHlmPTRY~vdi~   40 (85)
                      |+.||||+.+|+       +++|            .+|.+||.+|-..++++
T Consensus        19 gk~~vIv~i~d~-------~~vlVdg~~~~~~~rk~kn~khl~lt~~ki~~~   63 (84)
T PRK04333         19 GRKCVIVDIIDK-------NFVLVTGPSLTGVKRRRCNIKHLEPTDKKVDIE   63 (84)
T ss_pred             CCEEEEEEEecC-------CEEEEECCCcCCCCCeeechHHEEEeeEEEECC
Confidence            789999999999       7888            99999999999888764

>PTZ00065 60S ribosomal protein L14; Provisional

Probab=95.80  E-value=0.016  Score=40.45  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=30.1

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE------------Eeecceeeeeeeeeeccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL------------LVSYQHLMPTRYTLDVDL   41 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal------------vvNynHlmPTRY~vdi~l   41 (85)
                      |+-||||-.+|.       ..||            +||++||.||-+.++|+-
T Consensus        23 GKL~vIVDIID~-------nRvLVDGP~~tgV~Rq~i~~k~l~LT~~~v~i~r   68 (130)
T PTZ00065         23 GKLCFIVDIVTP-------TRVLVDGAFITGVKRQSIPLKRLKLTDEKIKINR   68 (130)
T ss_pred             CCEEEEEEEEcC-------CeEEEeCCCcCCcceeEEeccceEEccEEEecCC
Confidence            788999999997       5555            899999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
3izr_a	136	Localization Of The Large Subunit Ribosomal Protein		4e-23
3izs_a	136	Localization Of The Large Subunit Ribosomal Protein		1e-12
3zf7_a	133	High-resolution Cryo-electron Microscopy Structure		5e-08

>pdb|3IZR|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 136

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 66/112 (58%), Gaps = 32/112 (28%)
Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IV+ F++ TR+RP GHCL                               LV++ HLMPTR
Sbjct: 25  IVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPTR 84
Query: 35  YTLDVDLKVVVTA-DSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDVDLK V    D+L ++DKK+ ACK  K RLE+RFKT KNRWFFTKLRF
Sbjct: 85  YTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKNRWFFTKLRF 136

>pdb|3IZS|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 32/112 (28%)
Query: 6   IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
           IVK  D+ ++  P GH L+                               V+Y HL+PTR
Sbjct: 25  IVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTR 84
Query: 35  YTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           YTLDV+  K VV+ ++ +   ++  A K  KK  EER +  KN+WFF+KLRF
Sbjct: 85  YTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

>pdb|3ZF7|AA Chain a, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 133

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 40/115 (34%)
Query: 6   IVKSFDDRTRERPNGHCLL-------------------------------VSYQHLMPTR 34
           IV++ D R +ERP GH LL                               V+++H +PTR
Sbjct: 24  IVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSITRRSQVGVFLRVVNHKHFLPTR 83
Query: 35  YTLDVD----LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 85
           Y +D+      ++ V+  S ++K K+++     K+  + R+    NRWFF +LRF
Sbjct: 84  YNMDLSRELRGRINVSDASKKAKSKQLV-----KRLFQARYNAGNNRWFFQRLRF 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
3iz5_A	216	60S ribosomal protein L1 (L1P); eukaryotic ribosom	3e-19
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	6e-19
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	3e-14

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Length = 144

 Score = 62.1 bits (150), Expect = 3e-14
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 42/121 (34%)

Query: 6   IVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTR 34
           IVKS +D T++R  GH L                                V+  H+MPTR
Sbjct: 25  IVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPTR 84

Query: 35  YTLD--VDLKVVVTADSLQSKDKKMIACKETKKRLEERFKT--------SKNRWFFTKLR 84
           Y++    D K +V  D +++  K        KK   E+++T        S  ++FF+KLR
Sbjct: 85  YSVKELCDFKELVKEDKIKNNAKSE-VRDTLKKVFVEKYRTINPEEKSASHTKFFFSKLR 143

Query: 85  F 85
           F
Sbjct: 144 F 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
3iz5_a	136	60S ribosomal protein L27 (L27E); eukaryotic ribos	100.0
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	100.0
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	100.0
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	99.08
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	98.93
2joy_A	96	50S ribosomal protein L14E; protein solution struc	98.88
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	98.66
4a18_F	126	RPL14; ribosome, eukaryotic initiation factor 6, E	98.45
3j21_5	83	50S ribosomal protein L14E; archaea, archaeal, KIN	97.8
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	93.65
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	90.48

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N

Probab=100.00  E-value=1.5e-43  Score=246.97  Aligned_cols=84  Identities=38%  Similarity=0.636  Sum_probs=82.7

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE-------------------------------Eeecceeeeeeeee--eccccccccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL-------------------------------LVSYQHLMPTRYTL--DVDLKVVVTA   47 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal-------------------------------vvNynHlmPTRY~v--di~lk~~v~~   47 (85)
                      |+|||||+++||||+||||+|||                               +|||||||||||+|  |||||++|++
T Consensus        20 GkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pTry~v~~di~lK~~v~~   99 (144)
T 4a18_N           20 GKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKE   99 (144)
T ss_dssp             TCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEEEEECSTTCCHHHHSCH
T ss_pred             CCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEeeEEeeccCchhhccCH
Confidence            89999999999999999999999                               69999999999999  9999999999


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHh--------cCCCceEeeeecCC
Q 041379           48 DSLQSKDKKMIACKETKKRLEERF--------KTSKNRWFFTKLRF   85 (85)
Q Consensus        48 d~~~d~~~k~~a~ke~k~~feery--------k~gknkwfF~KLrF   85 (85)
                      |+|+| ++|++|+++++..|||||        ++|+|+|||+||||
T Consensus       100 d~~~~-~~k~~a~~~~k~~feery~~~~~~~kk~gknkwfF~kLrF  144 (144)
T 4a18_N          100 DKIKN-NAKSEVRDTLKKVFVEKYRTINPEEKSASHTKFFFSKLRF  144 (144)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHCCCCC
T ss_pred             HHhhh-hHhHHHHHHHHHHHHHHhhhccccccccCCceEeeeecCC
Confidence            99999 999999999999999999        99999999999998

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E

Probab=98.93  E-value=9.4e-10  Score=79.45  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=35.7

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE-------------Eeecceeeeeeeeeecc-cc-ccccccccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL-------------LVSYQHLMPTRYTLDVD-LK-VVVTADSLQ   51 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal-------------vvNynHlmPTRY~vdi~-lk-~~v~~d~~~   51 (85)
                      |+|||+||++|+       ||+|             .+|++|+|||||.|||+ ++ ..+|.+-|+
T Consensus        60 GKrvV~LKql~s-------gllLVtGP~~vn~vplrrvn~~~vi~TstkvDis~vki~~~~d~YF~  118 (191)
T 4a18_E           60 GKRVVFLKQLKS-------GLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFG  118 (191)
T ss_dssp             TBEEEEEEECTT-------SCEEEECCTTTSSCCSEEECGGGEEEEEEECCCTTCCGGGCCGGGSC
T ss_pred             CCEEEEEEecCC-------CeEEEecCccccCCceEEEeeeeEEeeeeEeecccccccccCHHHhc
Confidence            899999999998       7888             89999999999999987 43 225544443

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A

Probab=98.88  E-value=1.5e-09  Score=70.43  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=30.5

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE-------------Eeecceeeeeeeeeecc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL-------------LVSYQHLMPTRYTLDVD   40 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal-------------vvNynHlmPTRY~vdi~   40 (85)
                      |++||||+.+|+       +|+|             .+|++|||||+|.+|++
T Consensus        19 Gk~~VIv~~iD~-------~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~   64 (96)
T 2joy_A           19 GSKCVIVDIIDD-------NFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQ   64 (96)
T ss_dssp             CCEEEEEEECSS-------SCEEEECCTTTTCCCCEEESCSSCEEEEEECCCC
T ss_pred             CCEEEEEEEeCC-------CEEEEECCcccCCcCCEEEchHHEEEeeEEEeCC
Confidence            899999999999       5888             89999999999999965

>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7

Probab=98.45  E-value=1.4e-07  Score=64.33  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.7

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE---------Eeecceeeeeeeeee-ccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL---------LVSYQHLMPTRYTLD-VDL   41 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal---------vvNynHlmPTRY~vd-i~l   41 (85)
                      |++||||..+|+       +|||         ++|++||+||.|.++ |+-
T Consensus        22 GklavIVdIID~-------nrvLVdGp~V~Rq~~n~k~l~LT~~~v~~i~r   65 (126)
T 4a18_F           22 GKLAVIVNIINQ-------NRILIDGEHIVRQVIPIRRVHLTKFQIDNVEL   65 (126)
T ss_dssp             TEEEEEEEEETT-------TEEEEEETTEEEEEEEGGGEEEEEEECTTCCT
T ss_pred             CCEEEEEEEecC-------CeEEEeCCCcccceeeccceEEcceeccccCC
Confidence            789999999999       6999         899999999999998 874

>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=97.80  E-value=2.2e-05  Score=49.68  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE------------Eeecceeeeeeeeeecc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL------------LVSYQHLMPTRYTLDVD   40 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal------------vvNynHlmPTRY~vdi~   40 (85)
                      |++||||+++|+       +|||            .+|..||-||-+.++++
T Consensus        19 Gk~~vIv~iiD~-------~~vlV~g~~~~~v~rk~kn~khl~lt~~~i~~~   63 (83)
T 3j21_5           19 GQKVVVVDIIDK-------NFVLVTGAGLNKVKRRRMNIKHIEPLPQKIDIP   63 (83)
T ss_dssp             CCCEEEEEECSS-------SCEEEECCTTTTCCCEEESCSSCEEEEEECCCC
T ss_pred             CCEEEEEEEcCC-------CEEEEECCccCccCCeEechHHEEEeeEEEECC
Confidence            789999999999       6888            79999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d2joya1	96	Ribosomal protein L14e {Sulfolobus solfataricus [T	98.25

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.25  E-value=4.4e-07  Score=57.59  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             CCeEeEEeecCCCCCCCCCceeE-------------Eeecceeeeeeeeeeccc
Q 041379            1 PLRRPIVKSFDDRTRERPNGHCL-------------LVSYQHLMPTRYTLDVDL   41 (85)
Q Consensus         1 ~~KAVIvk~~ddgt~~rpy~hal-------------vvNynHlmPTRY~vdi~l   41 (85)
                      |+.||||+.+|+       +++|             ++|++||+||.+.+||+-
T Consensus        19 GK~~vIvdiid~-------~rvLVdGP~~~tgV~r~~in~k~l~lT~~~i~i~~   65 (96)
T d2joya1          19 GSKCVIVDIIDD-------NFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQK   65 (96)
T ss_dssp             CCEEEEEEECSS-------SCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCS
T ss_pred             CCEEEEEEEecC-------CeEEEecccccCCcccEEEchHHEEeccEEEEccC
Confidence            899999999999       5777             999999999999999863