Citrus Sinensis ID: 041388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MAHDRQNNVTKRKRGRPKTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEEEcccccccHHHHcccccccEEEEEEEEccccccccEEEEcccccEEEEEEEEcccccccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEEEEccccccccHHHHHHcccccccEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEcccEEEEEEEcEEEccccccccccHHHHEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHccEEEEEcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHccEEEEEEEcccccHHHHHHHHHHHHHcHHHEEEEEEEccccccHHHHHHHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
mahdrqnnvtkrkrgrpktnrgnadrisslpdsVLCHIlsyiptkhvVATSVIAKRWKNVwtavpnlsfddrlclrppastyvplrgfaDFVHTVLLrtnpakigkfslycsrptnlaRFYDWIATALMREVGEIQLYLgqqsrvelPEAIYSAACLKVLTldsdfsiqvpssgtcfpcvkilsvrlenpnksvtenlfcscpsleelsvtcelhddtpppnliissaTLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFvmhdlhslkiVKLDIMhaewaqvdPYRAIQLLAGINSCKYLYLSAGIMSSVELhrnggrtdrmASTANRAKKLTElgkscpaqeqfgwlesdfdvphclVHTVKnieikgvqgdedeRPLLKYLLQFAAAMEKMLMWAKasvpkenrANLRESILQLprasmkttieik
Flexible Loop (DISEMBL)
mahdrqnnvtkrkrgrpktnrgnadrisslpDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTnpakigkfslycsrptNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFDVPHCLVHTVKNIeikgvqgdedeRPLLKYLLQFAAAMEKMLMWAKASVPKENRANLResilqlprasmkttieik
Low Complexity Region (SEG)
MAHDRQNNVTKRKRGRPKTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK
Disordered region (IsUnstruct)
*******************************DSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVEL***************************PAQEQFGWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKA*****************************
Disordered Region (DISOPRED)
****************************SLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK
Disordered Region (DISEMBL)
***********************ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK
Disordered Region (DISPRO)
************************DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHDRQNNVTKRKRGRPKTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q56XS8	456	F-box/FBD/LRR-repeat prot	yes	no	0.9	0.868	0.261	4e-26
Q9FZ52	449	F-box/FBD/LRR-repeat prot	no	no	0.884	0.866	0.254	1e-24
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.886	0.930	0.264	4e-24
Q9LXR6	457	Putative F-box protein At	no	no	0.865	0.833	0.260	5e-23
Q9FJ30	540	Putative F-box/LRR-repeat	no	no	0.681	0.555	0.287	1e-22
Q9SCQ5	427	Putative FBD-associated F	no	no	0.884	0.911	0.258	4e-22
Q9ZV93	458	F-box/FBD/LRR-repeat prot	no	no	0.915	0.879	0.254	5e-22
Q9LXQ6	427	Putative F-box protein At	no	no	0.893	0.920	0.263	2e-21
Q9M190	532	Putative F-box/LRR-repeat	no	no	0.895	0.740	0.270	2e-21
Q9FFR7	455	Putative F-box/LRR-repeat	no	no	0.665	0.643	0.291	3e-21

>sp|Q56XS8|FDL2_ARATH F-box/FBD/LRR-repeat protein At1g13780 OS=Arabidopsis thaliana GN=At1g13780 PE=2 SV=1

 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 210/466 (45%), Gaps = 70/466 (15%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS LP+S++  IL ++PTK  V TSV++ RWKN+W  VP L  +   C   P      
Sbjct: 10  DRISELPESLISQILLHLPTKASVKTSVLSTRWKNLWLNVPGLDLN---CRDFPFQNNNE 66

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
            +   DF+   L   N +++ KF +  SR   + +F D I  A+ R +  + +      R
Sbjct: 67  -KLLIDFIDRFLQFNNESRLQKFKVDYSR-DKIIKFSDRIGDAISRGIRVLDVESNTYYR 124

Query: 145 ----------VE-LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKS 193
                     +E +P  +YS  C  +++L   +S          PC+K + +R    + S
Sbjct: 125 DADDCIDYPCIEFMPLNLYS--CKTLVSLKLSYSGLEDPGFVYLPCLKFMHLREVRWDSS 182

Query: 194 VT---ENLFCSCPSLEELSVTCELHDDTPPPNLIIS---SATLKTCKLIVRSEDMLFREV 247
            T   E L   CP LEEL     LHDD     L+++   S +LK   +  R +  LFR V
Sbjct: 183 GTMNLEKLVSGCPVLEEL---IYLHDD----KLVVTRVRSRSLKRFSIPFRHKLSLFRRV 235

Query: 248 DYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLD---IMHAEWAQVDP------YR 298
                I AP LE + + +D     V+ +L SL ++ LD   I+   W   DP        
Sbjct: 236 TQTFEIDAPGLEYMSLKADHFDRIVVKNLTSLFMIDLDIKFIVGFGW-MFDPEDLPKRNE 294

Query: 299 AIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTE------------ 346
               L GI+S +++ +S   + +++L+   G   +  + +                    
Sbjct: 295 IRDFLTGISSVRHMVISHNTVKALDLYSKVGLIPKFNNLSRVEAAFPSSLLQFLPAFLES 354

Query: 347 --------LGKSCPAQ--EQFGWLESDFDVPHCLVHTVKNIEIKGV--QGDEDERPLLKY 394
                   L   CP +  E+F  +    +VP C V T++++EIKG+   G++D + +  Y
Sbjct: 355 FPNLKHLILETECPVEVMEKFELV----NVPRCFVSTLEHVEIKGLFDWGEQDMK-IASY 409

Query: 395 LLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK 440
            L+ +A ++K+++         + +++ E + +L + S +  I I+
Sbjct: 410 FLENSAVLKKLILSFMGCPQHYSESDIYEELNKLTKRSPRCQIIIR 455

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 210/460 (45%), Gaps = 71/460 (15%)

Query: 18  KTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRP 77
           K  + N+DRIS+LPDS+LC ILS + TK  V TSV++KRW+N+W  VP L  D       
Sbjct: 8   KEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLD------- 60

Query: 78  PASTYVPLRGFADFVHTVLLRTNPAKIGKFSL-YCSRPTNLARFYDWIATALMREVGEIQ 136
            ++ +     F  FV+  L   N   + +F L Y     + +RF  WI   + R V    
Sbjct: 61  -SNNFPDDDVFVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFN 119

Query: 137 LYL---GQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPN-K 192
           ++         V++P ++YS   L  L L    ++  P S +  PCVKI+ + +   +  
Sbjct: 120 VHNEVDDDDELVKMPLSLYSCERLVNLQL-YRVALDHPESVS-LPCVKIMHLDMVKYDAD 177

Query: 193 SVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT 252
           S  E L   CP LEEL++  + +D      + + S +LK+ K+    +   +   ++++T
Sbjct: 178 STLEILISGCPVLEELTIVRDPNDSLEV--VCVRSQSLKSFKI----DSERYESQNHVVT 231

Query: 253 ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLD-IMHAEWA---QVDPYRAI----QLLA 304
           I AP+LE + +      SF++H++     V +D I + E+    + D    I    + L 
Sbjct: 232 IDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPDDSSKIAMLGKFLT 291

Query: 305 GINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKS----CPA-QEQFGW 359
           G+++   + +S+  +  +    +  + +++   +N ++       +     P   E F  
Sbjct: 292 GLSTVSEMVISSDTLQVI---HDYCKMEQLPQFSNLSRLHAYFEDTWWEMLPTFLESFPN 348

Query: 360 LES---DFD------------VPHCLVHTVKNIEIKG------------VQGDEDERPLL 392
           L S   +FD            VP C + +++ + +K             + G   +R L 
Sbjct: 349 LHSLVMEFDCFPDTEQIDLSYVPQCFLSSLEFVHLKTPYVVNMQKEGRPLTGTSSKRKLA 408

Query: 393 KYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRAS 432
           KY L+  AA++K+ + A          N+ + I  +PR+S
Sbjct: 409 KYFLENGAALKKLTVSASF-------CNIIDEIKAIPRSS 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 197/438 (44%), Gaps = 48/438 (10%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS L D +L  ILS+IP K VVATS+++KRW+++W  V  L +DD          Y  
Sbjct: 2   DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSY----HTGDY-- 55

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
            + F+ FV+  LL  N   I    L             WI  AL R + ++++ +   S 
Sbjct: 56  -KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSN 114

Query: 145 ---VELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFC 200
                LP ++Y++  L+ L L +   + VPSS  C P +K+L ++ ++  + +   +L  
Sbjct: 115 DASFSLPSSLYTSDTLETLRLINFVLLDVPSS-VCLPSLKVLHLKTVDYEDDASLPSLLF 173

Query: 201 SCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLES 260
            CP+LEEL V  E HD     ++     +L+   +I ++     R V     I  P L+ 
Sbjct: 174 GCPNLEELFV--ERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRYV-----IDVPSLKY 226

Query: 261 LEIYSDLLGSFVMHDLHSLK-IVKLDIMHAEWAQVDPYRAIQLLAGIN------SCKYLY 313
           L I  D      ++D+  ++ + +L   H +  Q   ++ ++ L  +       S   + 
Sbjct: 227 LNITDD-----AVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVM 281

Query: 314 LSAGIMSSVELHRN-----GGRTDRMASTANRAKKLTEL--------GKSCPAQEQFGW- 359
             +GI+ S  +H N      G  D + S    + KL  L           C  +   GW 
Sbjct: 282 CPSGIIFSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLIDKQHESGLCGIETPIGWK 341

Query: 360 LESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRA 419
           L S   VP CL+ +++  E  G +G   +R +  Y+L+ AA +       +++   E   
Sbjct: 342 LPS--SVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRTAKFSPESTDVGEKYH 399

Query: 420 NLRESILQLPRASMKTTI 437
            L+E +  +P AS  + +
Sbjct: 400 MLKE-LASVPTASTSSKL 416

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 178/418 (42%), Gaps = 37/418 (8%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           D  S LPD V+ HILS +PTK   +TSV+AK+W+ ++  VP+L F+D   L P       
Sbjct: 7   DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKREK 66

Query: 85  ---LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQ 141
              LR F DFV  VL     + I KFSL      +  R   WI   L R V  + L++  
Sbjct: 67  DGILRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHLALFMDF 126

Query: 142 QSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCS 201
           +    LP  I  +  L  L       + +       P +K L +      +   + L  +
Sbjct: 127 EEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQFQTLLPA 186

Query: 202 CPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESL 261
           CP LEEL +   L+ +    N+I+SS++LK  K  + SED         L+   P L  L
Sbjct: 187 CPVLEELML---LNMEWKDRNVILSSSSLKNLK--ITSEDGCLG----TLSFDTPNLVFL 237

Query: 262 EIYSDLLGSFVMHDLHSLKIVKLD-IMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS 320
           + Y  +   + + +L +L  V ++ ++ A+           L+ GI + +  ++S     
Sbjct: 238 DYYDYVAEDYPIVNLKNLVEVGINLVLTADRINRARDNVWNLIHGIQNAEIFHISPVTFE 297

Query: 321 SVELHRNGGRTDRMASTANRAKKLTE-------LGKSCPAQEQF---GWLESDF----DV 366
            + L        +  +T N    + +       L K+CP  E     G L +      DV
Sbjct: 298 VLSLSCEAMPVFKNLTTLNIRTVMQQGWQAMPLLLKNCPNLETLYLGGLLHTVTNKCGDV 357

Query: 367 PHCLVHT----------VKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVP 414
             C+             V  I+I+G +G   E  ++K+ L F  ++++M +  +   P
Sbjct: 358 CDCIPRKKKGRSLMACPVNKIQIQGFRGTIREVHMIKHFLDFCPSLKEMEIIVETKEP 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 145/334 (43%), Gaps = 34/334 (10%)

Query: 14  RGRPKTNRG-NADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDR 72
           + R K   G + DRIS LPD+++CHILS++PTK   +T+V+AKRWK +   VPNL+FDD 
Sbjct: 2   KSRKKVVVGVSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDS 61

Query: 73  LCLRPPA------STYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIAT 126
           +   P A       +Y     F D V  +  +T    + +F + C    + +   +WI  
Sbjct: 62  IYFHPRARRNKYSKSYESFMSFVDSVLALQAKTK-TPLKRFHVKCEDVVDQSWVLEWIPK 120

Query: 127 ALMREVGEIQL-------YLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVP-SSGTCFP 178
            L R V +I L       Y    S   LP  I+ +  L  L +     + +    G   P
Sbjct: 121 VLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVEGGVSLP 180

Query: 179 CVKILSVRLENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLI-- 236
            +K L +       S+   L   C +LEEL +   +  D+        S ++ T K +  
Sbjct: 181 KLKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMWADSSEDEACHVSVSIPTLKRLNF 240

Query: 237 VRSEDMLFREVDYM-------------LTITAPKLESLEIYSD-LLGSFVMHDLHSLKIV 282
            RSED    E  +              L+   P L  LE YSD ++  +      SL   
Sbjct: 241 CRSEDFYEGEFHFYEDYDEENINEGVSLSFDNPNLVYLE-YSDVIVDKYKQVSFDSLVEA 299

Query: 283 KLDIMHA-EWAQVDPYRAIQLLAGINSCKYLYLS 315
            L +    +  + D     +LL GI++ K LYLS
Sbjct: 300 NLRLRKTPDQDETDKVNVTKLLMGIHNVKILYLS 333

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 195/437 (44%), Gaps = 48/437 (10%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS+L D +L  I+S +PTK VV T +++KRWK +W  VP L FDD   L P  S Y  
Sbjct: 2   DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEP--SYYGR 59

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLY-CSRPTNLARFYDWIATALMREVGEIQL-----Y 138
              + D    VL R    +  KF++  C    ++A    WI   ++R + E+++     Y
Sbjct: 60  FLKYVD-KSMVLNRAQVLETVKFNVGPCCSSEDIA---TWIRIGMVRNMRELEISHCEGY 115

Query: 139 LGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILS-VRLENPNKSVTEN 197
             +   ++LP+++Y+   L+VL L S   + VP    CFP +K L  V +E   K     
Sbjct: 116 FREHRSIKLPKSLYTYEKLEVLKLASTVVLNVP-IDVCFPSLKSLHLVCVEYKTKKSHRR 174

Query: 198 LFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPK 257
           L   CP LEEL V  + ++     +  +   TL++  ++  S ++     D+   + AP 
Sbjct: 175 LLSGCPVLEEL-VLDKSYNSFHVRSFYVEIPTLQSLSILDTSGELY---GDFTFVVNAPA 230

Query: 258 LESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAG 317
           L+    + D  G   + D +  ++V ++I      +V      +LL  + S K L L   
Sbjct: 231 LKYFN-FVDFYGDLCLRD-NMPEVVDVNI------KVIYRNPKKLLGPLKSVKRLSLCLS 282

Query: 318 IMSSVELHRNGGRT-------------DRMASTANRAKKLTELGKSCPAQEQFGWLESDF 364
             +++  H    +              D +      + KL  L       E+  +L+   
Sbjct: 283 PSTTLHNHMEFYQLVHLELCGDALMWWDLLTWMLQSSPKLQVLKIYECKCEEHDYLDDPI 342

Query: 365 D--------VPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASV-PK 415
           +        VP CL+  +   E K     ++E+ ++ Y+L+ A  ++     A + + PK
Sbjct: 343 EEHWEEPSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATFSAASYLYPK 402

Query: 416 ENRANLRESILQLPRAS 432
           E R+     ++ + RAS
Sbjct: 403 EERSRELNELVYMARAS 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 210/475 (44%), Gaps = 72/475 (15%)

Query: 13  KRGRPKTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVP--NLSFD 70
           KR R K +R   D IS+LP+++LC +L Y+PTK VV +SV++ RW+N+W  VP  NLS+ 
Sbjct: 7   KRVRAKGSR-EVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYC 65

Query: 71  DRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPT------------NLA 118
           D             +R    + H   LR   + +G  S  C +               LA
Sbjct: 66  D-----------FHVRNTFSYDHNTFLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLA 114

Query: 119 RFYDWIATALMREVGEIQLYLG------QQSRVELPEAIYSAACLKVLTLDSDFSIQVPS 172
               WI + + R+V     YLG           E+P  +Y+   L  LTLD   S+  P 
Sbjct: 115 LIRRWINSVVSRKVK----YLGVLDDSCDNYEFEMPPTLYTCETLVYLTLDG-LSLASP- 168

Query: 173 SGTCFPCVKILSVRL-ENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLK 231
                P +K L + + +  +    E L   CP LE L++     DD       + S +L 
Sbjct: 169 KFVSLPSLKELHLSIVKFADHMALETLISQCPVLENLNINRSFCDDFEFT--CVRSQSLL 226

Query: 232 TCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEW 291
           +   +  +++ML    D ++ I APKL+ L +    + SF+++DL SL    +D +    
Sbjct: 227 SFTHVADTDEML--NEDLVVAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLI 284

Query: 292 AQ-------VDPYRAIQ-LLAGINSCKYLYLSAGIMSSVE---------LHRNGGRTDRM 334
            +       ++    I+  L GI+S K L +++  +  +          L RN     R+
Sbjct: 285 CKKMFNPNDLNKRNMIRDFLVGISSIKTLIIASSTLEVIYDYSRCEPLPLFRNLSSL-RV 343

Query: 335 ASTANRAKKLTELGKSCPAQEQFGWLESDF---------DVPHCLVHTVKNIEI-KGVQG 384
                + + L    +SCP  +      +++          VP   + +++ ++I + ++G
Sbjct: 344 DFYGYKWEMLPIFLESCPNLKSLVVGSANYREKEGINILSVPRGFLSSLEYVKIERPLKG 403

Query: 385 DEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEI 439
           +  E  L+ YLL+ +  ++K+ +    S+ KE    L+E +  +PR S    + I
Sbjct: 404 EAMEMKLVSYLLENSTILKKLTLCLDDSIKKEESVILKE-LNTIPRLSSACQVVI 457

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXQ6|FB193_ARATH Putative F-box protein At3g44060 OS=Arabidopsis thaliana GN=At3g44060 PE=4 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 187/440 (42%), Gaps = 47/440 (10%)

Query: 30  LPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFA 89
           LPD +L  IL  +PTK  V+TSV++KRW+ ++T   NL F D +  RP       L+ F 
Sbjct: 4   LPDDLLVQILYLLPTKEAVSTSVLSKRWRTLFTRSDNLDFHDPISGRPEDI----LKSFN 59

Query: 90  DFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYD-WIATALMREVGEIQLYLGQQS---RV 145
           DFV + L       I KFSL+    T      D WI  AL   V E+ L+L  +S     
Sbjct: 60  DFVDSSLAFQGGKHIKKFSLHTKIKTFEYHVLDRWICNALEHGVSELHLHLMHESWPWLF 119

Query: 146 ELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLF-CSCPS 204
            +P  +++++ L  L+L S          T  P +K+L +           N+F  +CP+
Sbjct: 120 SIPSKVFNSSTLVKLSLGSRLYCPSFPPDTSLPALKVLLLDSILFRDDQLSNVFLAACPA 179

Query: 205 LEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIY 264
           LE+L++    H        +ISS ++K   L V S    +    Y+LT+  P +  L   
Sbjct: 180 LEDLTIHHTYHP------CVISSKSIKKLSLSVNSG---YYGAGYILTLDTPSVVDLYYS 230

Query: 265 SDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQ-------LLAGINSCKYLYLSAG 317
                +  +  L SL  V LD+   E    +  R +Q       L+  I + K L+L+  
Sbjct: 231 DSPRHNAPLFHLDSLAKVTLDLHFIE----NNNREVQNDADVKNLIREICNVKTLHLTCS 286

Query: 318 IMSSVELHRNGG--RTDRMASTANRAKK------LTELGKSCPAQE----------QFGW 359
            +  + ++  GG    + +      +KK      L  L ++ P  E           FG 
Sbjct: 287 TVEVISVYCKGGLPMFNNLVELVFSSKKEGWRVLLPLLLENSPNLETLVLSDLHRYTFGR 346

Query: 360 LESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRA 419
                 +P    + +K + I   QG       + + L     +E M +   A++    + 
Sbjct: 347 RHRFVGIPIPPNNQIKVLRIMQYQGSATVLKHISHFLLNMDCLEVMKVNVAAALDDPKKM 406

Query: 420 NLRESILQLPRASMKTTIEI 439
            L E +L+LP AS K  I++
Sbjct: 407 QLTEDLLKLPTASCKLKIQV 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M190|FBL49_ARATH Putative F-box/LRR-repeat protein At3g42770 OS=Arabidopsis thaliana GN=At3g42770 PE=4 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 195/443 (44%), Gaps = 49/443 (11%)

Query: 27  ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP-- 84
           ++ LPD +L  ILS++PTK   +TS+++KRW+ ++T  PNL FD+ L L+     +    
Sbjct: 1   MNCLPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDNSLLLQSKKRKWNMRN 60

Query: 85  -LRGFADFVHTVLLRTNPAKIGKFSLY-------CSRPTNLARFYDWIATALMREVGEIQ 136
             + F  FV + L       I  FSL         +   ++ R   WI  AL   V E+ 
Sbjct: 61  IQKSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDVNR---WICNALEHGVSELH 117

Query: 137 LYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKIL---SVRLENPNKS 193
           L +    R  LP  I+++  L  L+L +     V  +    P +K+L   S+  E P   
Sbjct: 118 LRIDYTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVPNCISLPSLKVLFLDSIWFEVPQFL 177

Query: 194 VTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTI 253
           +      +CP+LE+L++  + H    P +  ISS T+K  +L V      F  VDY L +
Sbjct: 178 I---FLTACPALEDLTIYQKPHSVGMPYH--ISSKTIK--RLSVTYTCGYF--VDYGLKL 228

Query: 254 -TAPKLESLEIYSDLLGSFVMH-DLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKY 311
              P +  L  YSD +     H +L SL    LDI    +   +     +LL+GI + K 
Sbjct: 229 FNTPSVVDL-YYSDYVRHKYPHMNLDSLPKATLDI---HFLDDNAANVTELLSGIRNVKT 284

Query: 312 LYLSAGIMSSVELHRNG------GRTDRMASTANRAKK--LTELGKSCPAQEQF------ 357
           L+L++  +  + L   G         +   S   R  K  L  L + CP           
Sbjct: 285 LHLTSSTVKVILLCCKGEIPMFENLINLKFSGKTRQWKFLLPLLLEICPNLTTLVLSGLD 344

Query: 358 -GWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKE 416
             W       P+   + VK + I   QG E E  L+ Y +     ++ + ++  + +   
Sbjct: 345 QNWFVGFRTPPN---NQVKMLSIMQYQGSERELKLISYFVLKMECLQVVKVYVSSPMNDL 401

Query: 417 NRANLRESILQLPRASMKTTIEI 439
            +  L E +L+LP+AS K  I++
Sbjct: 402 KKMQLTEDLLKLPKASPKLNIQV 424

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFR7|FBL87_ARATH Putative F-box/LRR-repeat protein At5g41630 OS=Arabidopsis thaliana GN=At5g41630 PE=4 SV=1

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 136/319 (42%), Gaps = 26/319 (8%)

Query: 22  GNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPAST 81
           G  D IS LPD+++ HILS++PT   VAT+V+AKRWK + + V +L FDD LCL P  + 
Sbjct: 9   GGRDIISDLPDALIGHILSFLPTIEAVATTVLAKRWKPLLSFVHSLDFDDSLCLHPAKTN 68

Query: 82  ---YVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLY 138
                    F  FV  VL     A+I KF L      N     DWI   L R+V +I+LY
Sbjct: 69  EEKRTNATSFMRFVDGVLALQGNARINKFRLNGKHIINERWVLDWIQNVLKRDVSDIRLY 128

Query: 139 LG------QQSRVELPEAIYSAACLK--VLTLDSDFSIQVPSSGTCFPCVKILSVRLENP 190
           +         S   LP  I+ +  L   ++  + D +I V       P +K L +     
Sbjct: 129 VSSCSDGFDSSFYHLPPEIFVSQTLVTLIIMFEGDINISV-GREVSLPKLKTLHLYHFKI 187

Query: 191 NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVD-- 248
             S    L   C +LEEL +     D++  P     +  L   K++       + E +  
Sbjct: 188 KLSTFNKLISGCHALEELMMINWKWDESSEPEPCFVTIYLPNLKILEYCRFERYDEANDK 247

Query: 249 YMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI----------MHAEW--AQVDP 296
             L    PK+  LE +  +   +      SL   +L I          +  E+  +  + 
Sbjct: 248 VSLLFHNPKVVYLEFFDSIADRYQQVSFGSLVEARLGIRLTYDQVYNHLETEYYVSSKEK 307

Query: 297 YRAIQLLAGINSCKYLYLS 315
                LL GI + K LYLS
Sbjct: 308 SNVTNLLTGICNVKILYLS 326

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
147812093	607	hypothetical protein VITISV_040899 [Viti	0.909	0.658	0.305	2e-36
224114976	462	predicted protein [Populus trichocarpa]	0.927	0.883	0.279	2e-27
8778383	451	F16A14.1 [Arabidopsis thaliana] gi|46518	0.9	0.878	0.261	3e-24
79343779	456	F-box/FBD/LRR-repeat -containing protein	0.9	0.868	0.261	3e-24
15219959	449	F-box/RNI-like/FBD-like domains-containi	0.884	0.866	0.254	9e-23
22328947	419	F-box/FBD/LRR-repeat protein [Arabidopsi	0.886	0.930	0.264	3e-22
297844280	455	F16A14.1 [Arabidopsis lyrata subsp. lyra	0.909	0.879	0.260	8e-22
297819758	426	F-box family protein [Arabidopsis lyrata	0.897	0.927	0.262	1e-21
296086770	411	unnamed protein product [Vitis vinifera]	0.75	0.802	0.273	2e-21
297844624	452	F-box family protein [Arabidopsis lyrata	0.909	0.884	0.248	3e-21

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 137/448 (30%), Positives = 207/448 (46%), Gaps = 48/448 (10%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           D IS+LPD +LCHILS++PTK  V TS+++KRW+ +W +VP L FDD L L P  ST V 
Sbjct: 10  DIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNP--STLVE 67

Query: 85  LRG----FADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLG 140
           L      F +FV  VL  +  + I KF L   R  NL   Y WI  AL R V E+ L+L 
Sbjct: 68  LEERIIMFQNFVDGVLRHSEVSCIKKFRL-GYRDNNLDSVYSWICIALERRVQELDLHLL 126

Query: 141 QQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLF 199
              RVELP   +    L V+ L     + +P++    P +K L ++ +E  +    + L 
Sbjct: 127 IDWRVELPPMFFICKTLVVVKLSCALFLDIPTT-VWLPSLKALHLKSVEYSDDDSIQKLL 185

Query: 200 CSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLF----REVDYMLTITA 255
             CP LEEL +  E  D+    N  +S+ +LK  ++   ++         + DY + + A
Sbjct: 186 SGCPVLEELVIEREERDNQWVVN--VSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDA 243

Query: 256 PKLESLEIYSDLLGSFVMHDLHSLKIVKLDI-MHAEWAQVDPYRA--------IQLLAGI 306
           P LE L I   L   + + DL SL    +D+   +E  +  P+           +LL  I
Sbjct: 244 PNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGRI 303

Query: 307 NSCKYLYLSAGIMSSVE---------LHRNGGRTDRMASTANRAKKLTELGKSCPAQEQF 357
           ++ K L L+   + S+             N  R + +         L     S P  E  
Sbjct: 304 SNVKCLSLTGVTLDSLSGTIGDYKLPTFHNMTRLEFLFIGGFNWDFLPNFLHSSPNLEAL 363

Query: 358 -------------GWLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEK 404
                        GWL     VP CLV  +K IEI+ + G++ E   ++YLL+ A  +++
Sbjct: 364 VIETGYTNELIPEGWLMP-LQVPACLVLHLKEIEIRRIVGEDYELEAVEYLLKNAEVLQQ 422

Query: 405 MLMWAKASVPKENRANLRESILQLPRAS 432
           M +    S   +     ++ +L LPR S
Sbjct: 423 MTIDCHESYMDQEFCVCKK-LLGLPRGS 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114976|ref|XP_002316907.1| predicted protein [Populus trichocarpa] gi|222859972|gb|EEE97519.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 211/479 (44%), Gaps = 71/479 (14%)

Query: 9   VTKRKRGRPKTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLS 68
           +TK  R R +    N D IS LP+ ++ HILS++PTK  + T +++K W+ +W ++ N  
Sbjct: 1   MTKDDR-RKRCKEVNKDMISDLPNVIIGHILSFLPTKDALCTCILSKSWRELWRSLSNFD 59

Query: 69  FDDRLCLRPPASTYVPLRGFADFVHTV--LLRTNPAKIGKFSLYCSRPTNLARFYDWIAT 126
           FDDR        T+     F +F+     L  +    I KF L  +     +R   WI+ 
Sbjct: 60  FDDR--------TWKSKIIFGNFMDRFCYLHNSRENSITKFRLRVNGSYPSSRMSAWISA 111

Query: 127 ALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR 186
           A+   + E++L++     V LP  I+S   L +L L     I +   G  FPC+K+L ++
Sbjct: 112 AIKDNLEELKLWIYTADHVPLPRRIFSCEKLVILDLGYRIDIDLLGVGVHFPCLKVLHLQ 171

Query: 187 LENP---NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI-ISSATLKTCKLIVRSEDM 242
            E P   + +  E L    P LEEL +    H+D    N++ I S++LK  +LI+R   +
Sbjct: 172 -ELPMLDDHASIEKLLAGSPVLEELKIE---HEDCESRNVLRICSSSLK--RLIIRFPFV 225

Query: 243 LFREVD---YMLTITAPKLESLEIYSDLLGSFVMHDLHSLKI--------VKLDIMHAEW 291
            + E D     LT+  P LE L+     L   V   L+ L+I        + +   H   
Sbjct: 226 AYDEKDPGCRELTLDTPNLELLK-----LTDLVSEKLNMLQIPYSLVEAALSVAYKHVFT 280

Query: 292 AQVDPY--RAIQLLAGINS-CKYLYLSAGIMSSVELH-------------------RNGG 329
            QVD Y   A+QLL  I +  K L L    M +  L                    +N  
Sbjct: 281 IQVDDYIDMAVQLLRPIMTIVKILRLCDTTMRTSPLQTLSDAVHKKLPCVGNLPDFQNLT 340

Query: 330 RTDRMASTANRAKKLTELGKSCPAQEQF-----------GWLESDFDVPHCLVHTVKNIE 378
           R +  AS  +R   L E+ K  P  E F            W   +F VP CL  ++K IE
Sbjct: 341 RLEIEASGNDRWLVLHEILKCSPKLEVFILYKDSTEKTPRWRNPEF-VPRCLRSSLKVIE 399

Query: 379 IKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTI 437
             G + +  E  + +YL++ A  +EKM +     +  + +  + E + +  R S    I
Sbjct: 400 YVGFESELGEIEMAEYLIKNALVLEKMTIEYGWKMIHDFKERVAERLTECRRGSTACRI 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778383|gb|AAF79391.1|AC068197_1 F16A14.1 [Arabidopsis thaliana] gi|46518457|gb|AAS99710.1| At1g13780 [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 210/466 (45%), Gaps = 70/466 (15%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS LP+S++  IL ++PTK  V TSV++ RWKN+W  VP L  +   C   P      
Sbjct: 5   DRISELPESLISQILLHLPTKASVKTSVLSTRWKNLWLNVPGLDLN---CRDFPFQNNNE 61

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
            +   DF+   L   N +++ KF +  SR   + +F D I  A+ R +  + +      R
Sbjct: 62  -KLLIDFIDRFLQFNNESRLQKFKVDYSR-DKIIKFSDRIGDAISRGIRVLDVESNTYYR 119

Query: 145 ----------VE-LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKS 193
                     +E +P  +YS  C  +++L   +S          PC+K + +R    + S
Sbjct: 120 DADDCIDYPCIEFMPLNLYS--CKTLVSLKLSYSGLEDPGFVYLPCLKFMHLREVRWDSS 177

Query: 194 VT---ENLFCSCPSLEELSVTCELHDDTPPPNLIIS---SATLKTCKLIVRSEDMLFREV 247
            T   E L   CP LEEL     LHDD     L+++   S +LK   +  R +  LFR V
Sbjct: 178 GTMNLEKLVSGCPVLEEL---IYLHDD----KLVVTRVRSRSLKRFSIPFRHKLSLFRRV 230

Query: 248 DYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLD---IMHAEWAQVDP------YR 298
                I AP LE + + +D     V+ +L SL ++ LD   I+   W   DP        
Sbjct: 231 TQTFEIDAPGLEYMSLKADHFDRIVVKNLTSLFMIDLDIKFIVGFGW-MFDPEDLPKRNE 289

Query: 299 AIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTE------------ 346
               L GI+S +++ +S   + +++L+   G   +  + +                    
Sbjct: 290 IRDFLTGISSVRHMVISHNTVKALDLYSKVGLIPKFNNLSRVEAAFPSSLLQFLPAFLES 349

Query: 347 --------LGKSCPAQ--EQFGWLESDFDVPHCLVHTVKNIEIKGV--QGDEDERPLLKY 394
                   L   CP +  E+F  +    +VP C V T++++EIKG+   G++D + +  Y
Sbjct: 350 FPNLKHLILETECPVEVMEKFELV----NVPRCFVSTLEHVEIKGLFDWGEQDMK-IASY 404

Query: 395 LLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK 440
            L+ +A ++K+++         + +++ E + +L + S +  I I+
Sbjct: 405 FLENSAVLKKLILSFMGCPQHYSESDIYEELNKLTKRSPRCQIIIR 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79343779|ref|NP_172833.2| F-box/FBD/LRR-repeat -containing protein [Arabidopsis thaliana] gi|75217965|sp|Q56XS8.1|FDL2_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g13780 gi|62320538|dbj|BAD95126.1| hypothetical protein [Arabidopsis thaliana] gi|332190947|gb|AEE29068.1| F-box/FBD/LRR-repeat -containing protein [Arabidopsis thaliana]

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 210/466 (45%), Gaps = 70/466 (15%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS LP+S++  IL ++PTK  V TSV++ RWKN+W  VP L  +   C   P      
Sbjct: 10  DRISELPESLISQILLHLPTKASVKTSVLSTRWKNLWLNVPGLDLN---CRDFPFQNNNE 66

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
            +   DF+   L   N +++ KF +  SR   + +F D I  A+ R +  + +      R
Sbjct: 67  -KLLIDFIDRFLQFNNESRLQKFKVDYSR-DKIIKFSDRIGDAISRGIRVLDVESNTYYR 124

Query: 145 ----------VE-LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKS 193
                     +E +P  +YS  C  +++L   +S          PC+K + +R    + S
Sbjct: 125 DADDCIDYPCIEFMPLNLYS--CKTLVSLKLSYSGLEDPGFVYLPCLKFMHLREVRWDSS 182

Query: 194 VT---ENLFCSCPSLEELSVTCELHDDTPPPNLIIS---SATLKTCKLIVRSEDMLFREV 247
            T   E L   CP LEEL     LHDD     L+++   S +LK   +  R +  LFR V
Sbjct: 183 GTMNLEKLVSGCPVLEEL---IYLHDD----KLVVTRVRSRSLKRFSIPFRHKLSLFRRV 235

Query: 248 DYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLD---IMHAEWAQVDP------YR 298
                I AP LE + + +D     V+ +L SL ++ LD   I+   W   DP        
Sbjct: 236 TQTFEIDAPGLEYMSLKADHFDRIVVKNLTSLFMIDLDIKFIVGFGW-MFDPEDLPKRNE 294

Query: 299 AIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTE------------ 346
               L GI+S +++ +S   + +++L+   G   +  + +                    
Sbjct: 295 IRDFLTGISSVRHMVISHNTVKALDLYSKVGLIPKFNNLSRVEAAFPSSLLQFLPAFLES 354

Query: 347 --------LGKSCPAQ--EQFGWLESDFDVPHCLVHTVKNIEIKGV--QGDEDERPLLKY 394
                   L   CP +  E+F  +    +VP C V T++++EIKG+   G++D + +  Y
Sbjct: 355 FPNLKHLILETECPVEVMEKFELV----NVPRCFVSTLEHVEIKGLFDWGEQDMK-IASY 409

Query: 395 LLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK 440
            L+ +A ++K+++         + +++ E + +L + S +  I I+
Sbjct: 410 FLENSAVLKKLILSFMGCPQHYSESDIYEELNKLTKRSPRCQIIIR 455

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219959|ref|NP_173137.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana] gi|75263252|sp|Q9FZ52.1|FDL3_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g16930 gi|9802769|gb|AAF99838.1|AC051629_5 Hypothetical protein [Arabidopsis thaliana] gi|332191402|gb|AEE29523.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 210/460 (45%), Gaps = 71/460 (15%)

Query: 18  KTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRP 77
           K  + N+DRIS+LPDS+LC ILS + TK  V TSV++KRW+N+W  VP L  D       
Sbjct: 8   KEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLD------- 60

Query: 78  PASTYVPLRGFADFVHTVLLRTNPAKIGKFSL-YCSRPTNLARFYDWIATALMREVGEIQ 136
            ++ +     F  FV+  L   N   + +F L Y     + +RF  WI   + R V    
Sbjct: 61  -SNNFPDDDVFVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFN 119

Query: 137 LYL---GQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPN-K 192
           ++         V++P ++YS   L  L L    ++  P S +  PCVKI+ + +   +  
Sbjct: 120 VHNEVDDDDELVKMPLSLYSCERLVNLQL-YRVALDHPESVS-LPCVKIMHLDMVKYDAD 177

Query: 193 SVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT 252
           S  E L   CP LEEL++  + +D      + + S +LK+ K+    +   +   ++++T
Sbjct: 178 STLEILISGCPVLEELTIVRDPNDSLEV--VCVRSQSLKSFKI----DSERYESQNHVVT 231

Query: 253 ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLD-IMHAEWA---QVDPYRAI----QLLA 304
           I AP+LE + +      SF++H++     V +D I + E+    + D    I    + L 
Sbjct: 232 IDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPDDSSKIAMLGKFLT 291

Query: 305 GINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKS----CPA-QEQFGW 359
           G+++   + +S+  +  +    +  + +++   +N ++       +     P   E F  
Sbjct: 292 GLSTVSEMVISSDTLQVI---HDYCKMEQLPQFSNLSRLHAYFEDTWWEMLPTFLESFPN 348

Query: 360 LES---DFD------------VPHCLVHTVKNIEIKG------------VQGDEDERPLL 392
           L S   +FD            VP C + +++ + +K             + G   +R L 
Sbjct: 349 LHSLVMEFDCFPDTEQIDLSYVPQCFLSSLEFVHLKTPYVVNMQKEGRPLTGTSSKRKLA 408

Query: 393 KYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRAS 432
           KY L+  AA++K+ + A          N+ + I  +PR+S
Sbjct: 409 KYFLENGAALKKLTVSASF-------CNIIDEIKAIPRSS 441

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328947|ref|NP_194364.2| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75244651|sp|Q8H1R7.1|FDL27_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At4g26340 gi|23296372|gb|AAN13055.1| unknown protein [Arabidopsis thaliana] gi|332659787|gb|AEE85187.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 197/438 (44%), Gaps = 48/438 (10%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS L D +L  ILS+IP K VVATS+++KRW+++W  V  L +DD          Y  
Sbjct: 2   DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSY----HTGDY-- 55

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
            + F+ FV+  LL  N   I    L             WI  AL R + ++++ +   S 
Sbjct: 56  -KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSN 114

Query: 145 ---VELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFC 200
                LP ++Y++  L+ L L +   + VPSS  C P +K+L ++ ++  + +   +L  
Sbjct: 115 DASFSLPSSLYTSDTLETLRLINFVLLDVPSS-VCLPSLKVLHLKTVDYEDDASLPSLLF 173

Query: 201 SCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLES 260
            CP+LEEL V  E HD     ++     +L+   +I ++     R V     I  P L+ 
Sbjct: 174 GCPNLEELFV--ERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRYV-----IDVPSLKY 226

Query: 261 LEIYSDLLGSFVMHDLHSLK-IVKLDIMHAEWAQVDPYRAIQLLAGIN------SCKYLY 313
           L I  D      ++D+  ++ + +L   H +  Q   ++ ++ L  +       S   + 
Sbjct: 227 LNITDD-----AVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVM 281

Query: 314 LSAGIMSSVELHRN-----GGRTDRMASTANRAKKLTEL--------GKSCPAQEQFGW- 359
             +GI+ S  +H N      G  D + S    + KL  L           C  +   GW 
Sbjct: 282 CPSGIIFSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLIDKQHESGLCGIETPIGWK 341

Query: 360 LESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRA 419
           L S   VP CL+ +++  E  G +G   +R +  Y+L+ AA +       +++   E   
Sbjct: 342 LPS--SVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRTAKFSPESTDVGEKYH 399

Query: 420 NLRESILQLPRASMKTTI 437
            L+E +  +P AS  + +
Sbjct: 400 MLKE-LASVPTASTSSKL 416

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844280|ref|XP_002890021.1| F16A14.1 [Arabidopsis lyrata subsp. lyrata] gi|297335863|gb|EFH66280.1| F16A14.1 [Arabidopsis lyrata subsp. lyrata]

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 209/460 (45%), Gaps = 60/460 (13%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS LP+S++  IL ++PTK  V TSV++ RWKN+W  VP L  +   C   P      
Sbjct: 6   DRISELPESLISQILLHLPTKDSVKTSVLSTRWKNLWLNVPGLDLN---CRDFPFDNNNE 62

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
            +   DF+   L   N +++ KF +  SR   + +F D I  A+ R +  + +      +
Sbjct: 63  -KVLIDFIDRFLQFNNESRLLKFKVNYSR-DEIIKFSDRIRDAVNRRIRVLDVESNTYYQ 120

Query: 145 ----------VE-LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKS 193
                     +E +P  +Y++  L  L L   FS          PC+K + +R    + S
Sbjct: 121 DADDGLVYPCIEFMPLNLYTSKTLVSLKL--SFSGLADPGFVYMPCLKFMHLREVRWHSS 178

Query: 194 VT---ENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCK-LIVRSEDML--FREV 247
            T   E L   CP LEEL   C   DD     L+++    ++ K   + SE  +  FR V
Sbjct: 179 GTMNLEKLVSGCPVLEELIYLC---DD----ELVVTRVRSRSLKRFSIPSEHSISCFRSV 231

Query: 248 DYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI--MHAEWAQVDPYRAIQ---- 301
                I AP LE + +  D    F++ +L SL ++ LDI  +       DP    +    
Sbjct: 232 AQTFEIDAPGLEYMSLKEDHFDRFMVKNLTSLFMIDLDIKFIFGFGRMFDPEDLAKRNEI 291

Query: 302 --LLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTAN-RAKKLTELGKSCPA-QEQF 357
              L GI+  +++ +S   + ++ ++   G   +  + +  +A+  + L +  PA  E F
Sbjct: 292 RDFLTGISIVRHMIISHQTVKALHIYSKVGSIPKFNNVSRLQAEFPSSLLQFLPAFLESF 351

Query: 358 GWLESDF----------------DVPHCLVHTVKNIEIKGV--QGDEDERPLLKYLLQFA 399
             L+                   +VP C V T++ +EIKG+   G+ED + + +Y L+ +
Sbjct: 352 PNLKHLILKIVYPEEVMEELKLVNVPRCFVSTLERVEIKGLFDWGEEDMK-IARYFLENS 410

Query: 400 AAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEI 439
           A +EK+++         + +++ E + +L + S++  I I
Sbjct: 411 AVLEKLIVCFMGCPQHYSESDIYEELDKLTKRSLRCQIII 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819758|ref|XP_002877762.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297323600|gb|EFH54021.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 193/430 (44%), Gaps = 35/430 (8%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
           DRIS+L D +L  I S +PTK VV T +++KRWK +WT VP L FDD   L P  S Y  
Sbjct: 2   DRISNLSDDLLLKIFSSLPTKDVVVTMLLSKRWKFLWTMVPKLRFDDEFELDP--SYYGR 59

Query: 85  LRGFADFVHTVLLRTNPAKIGKFSLY-CSRPTNLARFYDWIATALMREVGEIQL-----Y 138
              + D    VL R    +  KF +  C    ++A    WI   ++R + E+++     Y
Sbjct: 60  FLKYVD-KSMVLNRAQVLETVKFDVGPCCSSEDIAT---WIRIGMVRHMRELEISHCEAY 115

Query: 139 LGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILS-VRLENPNKSVTEN 197
             +   ++LP+++Y+   L+VL L S   + VP    CFP +K L  V +E   K     
Sbjct: 116 FREHRSIKLPKSLYTYEKLEVLKLASTVVLNVP-IAVCFPSLKSLHLVCVEYKTKKSHRR 174

Query: 198 LFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPK 257
           L   CP LE+L V  + ++     +  +   TL+   ++  S ++     D+   + AP 
Sbjct: 175 LLSGCPVLEDL-VLDKSYNSFHVRSFYVEIPTLQRLSILDTSGELY---GDFTFVVNAPS 230

Query: 258 LESLEIYSDLLGSFVMHD-LHSLKIVKLDIMHAEWAQ-VDPYRAIQLLA-GINSCKYLYL 314
           L+    + D  G   + D +H +    + +++    + + P ++++ L+  +++   L+ 
Sbjct: 231 LKYFN-FVDFYGDLCLRDTMHEVVEANIKVIYKNPKKLLGPLKSVKRLSLCLSASTTLHN 289

Query: 315 SAGIMSSVELHRNGGRT---DRMASTANRAKKLTELG-KSCPAQE--------QFGWLES 362
                  V L   G      D +      + KL  L    C  +E        +  W E 
Sbjct: 290 HMEFYQLVHLELCGDALMWWDLLTWMLESSPKLQVLKLYKCECEEHDYSEDPIEDHWEEP 349

Query: 363 DFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLR 422
              VP CL+  +   E K     E+E+ ++ Y+L+ A  ++     A    PKE R+   
Sbjct: 350 S-SVPECLLFHLNIFEWKYYNAGEEEKKVVAYILKNARQLKTAAFSAPYLYPKEERSWEL 408

Query: 423 ESILQLPRAS 432
             ++ + RAS
Sbjct: 409 NELVYMARAS 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086770|emb|CBI32919.3| unnamed protein product [Vitis vinifera]

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 169/409 (41%), Gaps = 79/409 (19%)

Query: 25  DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPN---LSFDDRLCLRPPAST 81
           DRIS+LPD+VLCHI+S++PTK  V TSV++KRW+ +W ++PN            +P   +
Sbjct: 10  DRISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKPIGDS 69

Query: 82  YVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQ 141
              +  F +FV  VLL  + + I KF L CS     +    WI TAL R V E+ LY   
Sbjct: 70  ERSI-CFKNFVDKVLLHGSISCIRKFRLKCSDHELDSAVNSWICTALERNVQELDLYFDT 128

Query: 142 QSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCS 201
           +  +ELP   +    L VL L                                       
Sbjct: 129 EYPIELPPKFFFCKTLVVLKL--------------------------------------- 149

Query: 202 CPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESL 261
           CP LEEL +     D+    N  +S+ TLK+  +             Y L + AP LE L
Sbjct: 150 CPVLEELVIERWRLDEQWVFN--VSAPTLKSLAIYFSK---------YKLVVDAPNLEYL 198

Query: 262 EIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPY----RAIQLLAGINSCKYLYLS-- 315
            I   +   ++M +L SL    +++        D      R  +LL GI++ K+L LS  
Sbjct: 199 SITDFVSEDYLMSNLSSLVKAYVNVGPTIRGIDDQILYRGRIYELLRGISNVKHLSLSGE 258

Query: 316 -----AGIMSSVEL--HRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWLESDFD--- 365
                +G+    EL    +  R +         + L E   + P  E       + D   
Sbjct: 259 TLHSLSGMFCGYELPAFHSVTRLELEVDYGYGLEFLKEFLDTSPNLEILILENVNKDECE 318

Query: 366 ---------VPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKM 405
                    VP C+   +  +EIK   G + E   +++LL+ A  ++KM
Sbjct: 319 IEEWTLPLQVPTCVELHLNEVEIKKFDGLDYELGAIEFLLKNARVLKKM 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844624|ref|XP_002890193.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336035|gb|EFH66452.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 120/482 (24%), Positives = 216/482 (44%), Gaps = 82/482 (17%)

Query: 4   DRQNNVTKRKRGRPKTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTA 63
           D +N+V +++R        N+DRIS+LPDS+LC ILS + TK  V TSV++KRW+++W  
Sbjct: 2   DVENSVKEKQR--------NSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRSLWLH 53

Query: 64  VPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSL-YCSRPTNLARFYD 122
           VP L  D        ++ +     F  FV+  L+  N   + +F L Y     + +RF  
Sbjct: 54  VPALDLD--------SNNFPDDDVFVSFVNRFLVSENEQHLERFKLIYEVNEHDASRFKS 105

Query: 123 WIATALMREV------GEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTC 176
           WI   + R V       E+          ++P ++YS   L  L L     +  P S + 
Sbjct: 106 WINAVIKRRVCHFNVHNEVDDDDDDDELFKMPLSLYSCESLVNLQL-YRVVLDHPESVS- 163

Query: 177 FPCVKILSVRLENPN-KSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKL 235
            PCVKI+ + +   +  S  E L   C  LEEL++  + +D      + + S +LK+ K+
Sbjct: 164 LPCVKIMHLDMVKYDADSTLERLISGCSVLEELTIVRDPNDSLQV--VCVRSKSLKSFKI 221

Query: 236 IVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLD-IMHAEWA-- 292
               E   +   ++++ I AP+LE + +      SF++H++     V +D I + E+   
Sbjct: 222 ----ECERYESENHVVEIDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDP 277

Query: 293 -QVDPYRAI----QLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTEL 347
            + D    I    + L G+++   + +S+  +  +    +  + +++   +N ++     
Sbjct: 278 LEPDDSSKIAMLGKFLTGLSTVSEMVISSDTLQVI---HDYCKMEQLPQFSNLSRLHAYF 334

Query: 348 GKS----CPA-QEQFGWLES---DFD------------VPHCLVHTVKNIEIKG---VQG 384
             S     P   E F  L S   +FD            VP C + +++ + +K    V  
Sbjct: 335 EDSWWEMLPTFLESFPNLHSLVMEFDCFPDKEQIDLSSVPRCFISSLEFVHLKTPFVVNM 394

Query: 385 DEDERPLL---------KYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKT 435
            ++ RPL          KY L+  AA++K+ + A          N+   I  +PR+S + 
Sbjct: 395 QKEGRPLTGTSSKMKLAKYFLENGAALKKLTVSASF-------CNIINEIKSIPRSSTRC 447

Query: 436 TI 437
            +
Sbjct: 448 QV 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.575	0.563	0.307	7.1e-27
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.888	0.933	0.263	8.3e-27
TAIR|locus:2014859	456	AT1G13780 "AT1G13780" [Arabido	0.768	0.741	0.284	1.5e-26
TAIR|locus:2101674	427	AT3G50710 "AT3G50710" [Arabido	0.895	0.922	0.263	8e-26
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.586	0.563	0.320	3e-23
TAIR|locus:2101635	448	AT3G44810 [Arabidopsis thalian	0.665	0.654	0.292	3.1e-23
TAIR|locus:2075372	472	AT3G03040 "AT3G03040" [Arabido	0.563	0.525	0.337	7.9e-23
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.909	0.751	0.276	8.2e-23
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.568	0.564	0.317	1.2e-22
TAIR|locus:2081408	427	AT3G44060 "AT3G44060" [Arabido	0.645	0.665	0.305	1.5e-22

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 7.1e-27, Sum P(2) = 7.1e-27
 Identities = 85/276 (30%), Positives = 140/276 (50%)

Query:    18 KTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRP 77
             K  + N+DRIS+LPDS+LC ILS + TK  V TSV++KRW+N+W  VP L  D      P
Sbjct:     8 KEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNF--P 65

Query:    78 PASTYVPLRGFADFVHTVLLRTNPAKIGKFSL-YCSRPTNLARFYDWIATALMREVGEIQ 136
                 +V       FV+  L   N   + +F L Y     + +RF  WI   + R V    
Sbjct:    66 DDDVFV------SFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFN 119

Query:   137 LYL---GQQSRVELPEAIYSAACLKVLTLDS-DFSIQVPSSGTCFPCVKILSVRLENPNK 192
             ++         V++P ++YS  C +++ L     ++  P S    PCVKI+ + +   + 
Sbjct:   120 VHNEVDDDDELVKMPLSLYS--CERLVNLQLYRVALDHPES-VSLPCVKIMHLDMVKYDA 176

Query:   193 SVT-ENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYML 251
               T E L   CP LEEL++  + +D      + + S +LK+ K  + SE   +   ++++
Sbjct:   177 DSTLEILISGCPVLEELTIVRDPNDSLEV--VCVRSQSLKSFK--IDSER--YESQNHVV 230

Query:   252 TITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIM 287
             TI AP+LE + +      SF++H++     V +D++
Sbjct:   231 TIDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVI 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 8.3e-27, P = 8.3e-27
 Identities = 115/437 (26%), Positives = 200/437 (45%)

Query:    25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
             DRIS L D +L  ILS+IP K VVATS+++KRW+++W  V  L +DD          Y  
Sbjct:     2 DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSY----HTGDY-- 55

Query:    85 LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
              + F+ FV+  LL  N   I    L             WI  AL R + ++++ +   S 
Sbjct:    56 -KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSN 114

Query:   145 ---VELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFC 200
                  LP ++Y++  L+ L L +   + VPSS  C P +K+L ++ ++  + +   +L  
Sbjct:   115 DASFSLPSSLYTSDTLETLRLINFVLLDVPSS-VCLPSLKVLHLKTVDYEDDASLPSLLF 173

Query:   201 SCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLES 260
              CP+LEEL V  E HD     ++     +L+   +I    D  + + D  + I  P L+ 
Sbjct:   174 GCPNLEELFV--ERHDQDLEMDVTFVVPSLRRLSMI----DKNYGQCDRYV-IDVPSLKY 226

Query:   261 LEIYSDLLGSFVMHDLHSLK-IVKLDIMHAEWAQVDPYRAIQLLAGINSCKY-LYLS--- 315
             L I  D      ++D+  ++ + +L   H +  Q   ++ ++ L  +      L LS   
Sbjct:   227 LNITDD-----AVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVM 281

Query:   316 --AGIMSSVELHRN-----GGRTDRMASTANRAKKLTEL---GKS-----CPAQEQFGWL 360
               +GI+ S  +H N      G  D + S    + KL  L    K      C  +   GW 
Sbjct:   282 CPSGIIFSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLIDKQHESGLCGIETPIGW- 340

Query:   361 ESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRAN 420
             +    VP CL+ +++  E  G +G   +R +  Y+L+ AA + +   ++  S     + +
Sbjct:   341 KLPSSVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACL-RTAKFSPESTDVGEKYH 399

Query:   421 LRESILQLPRASMKTTI 437
             + + +  +P AS  + +
Sbjct:   400 MLKELASVPTASTSSKL 416

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014859 AT1G13780 "AT1G13780" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 108/379 (28%), Positives = 174/379 (45%)

Query:    25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
             DRIS LP+S++  IL ++PTK  V TSV++ RWKN+W  VP L  + R    P  +    
Sbjct:    10 DRISELPESLISQILLHLPTKASVKTSVLSTRWKNLWLNVPGLDLNCRDF--PFQNNNEK 67

Query:    85 LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSR 144
             L    DF+   L   N +++ KF +  SR   + +F D I  A+ R +  + +      R
Sbjct:    68 L--LIDFIDRFLQFNNESRLQKFKVDYSRD-KIIKFSDRIGDAISRGIRVLDVESNTYYR 124

Query:   145 ----------VE-LPEAIYSAACLKVLTLDSDFS-IQVPSSGTCFPCVKILSVRLENPNK 192
                       +E +P  +YS  C  +++L   +S ++ P      PC+K + +R    + 
Sbjct:   125 DADDCIDYPCIEFMPLNLYS--CKTLVSLKLSYSGLEDPGF-VYLPCLKFMHLREVRWDS 181

Query:   193 SVT---ENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDY 249
             S T   E L   CP LEEL     LHDD      +  S +LK   +  R +  LFR V  
Sbjct:   182 SGTMNLEKLVSGCPVLEELIY---LHDDKLVVTRV-RSRSLKRFSIPFRHKLSLFRRVTQ 237

Query:   250 MLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAE---WAQVDPY-----RAIQ 301
                I AP LE + + +D     V+ +L SL ++ LDI       W   DP        I+
Sbjct:   238 TFEIDAPGLEYMSLKADHFDRIVVKNLTSLFMIDLDIKFIVGFGW-MFDPEDLPKRNEIR 296

Query:   302 -LLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFGWL 360
               L GI+S +++ +S   + +++L+   G   +     N   ++     S   Q    +L
Sbjct:   297 DFLTGISSVRHMVISHNTVKALDLYSKVGLIPKF----NNLSRVEAAFPSSLLQFLPAFL 352

Query:   361 ESDFDVPHCLVHTVKNIEI 379
             ES  ++ H ++ T   +E+
Sbjct:   353 ESFPNLKHLILETECPVEV 371

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 8.0e-26, P = 8.0e-26
 Identities = 114/432 (26%), Positives = 197/432 (45%)

Query:    25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
             DRIS+L D +L  I+S +PTK VV T +++KRWK +W  VP L FDD   L P  S Y  
Sbjct:     2 DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEP--SYYGR 59

Query:    85 LRGFADFVHTVLLRTNPAKIGKFSLY-CSRPTNLARFYDWIATALMREVGEIQL-----Y 138
                + D    VL R    +  KF++  C    ++A    WI   ++R + E+++     Y
Sbjct:    60 FLKYVD-KSMVLNRAQVLETVKFNVGPCCSSEDIAT---WIRIGMVRNMRELEISHCEGY 115

Query:   139 LGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILS-VRLENPNKSVTEN 197
               +   ++LP+++Y+   L+VL L S   + VP    CFP +K L  V +E   K     
Sbjct:   116 FREHRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRR 174

Query:   198 LFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPK 257
             L   CP LEEL V  + ++     +  +   TL++  ++  S ++     D+   + AP 
Sbjct:   175 LLSGCPVLEEL-VLDKSYNSFHVRSFYVEIPTLQSLSILDTSGELYG---DFTFVVNAPA 230

Query:   258 LESLEIYSDLLGSFVMHD-LHSLKIVKLDIMHAEWAQV-DPYRAIQLLA-GINSCKYLYL 314
             L+    + D  G   + D +  +  V + +++    ++  P ++++ L+  ++    L+ 
Sbjct:   231 LKYFN-FVDFYGDLCLRDNMPEVVDVNIKVIYRNPKKLLGPLKSVKRLSLCLSPSTTLHN 289

Query:   315 SAGIMSSVELHRNGGRT---DRMASTANRAKKLTELG-KSCPAQE--------QFGWLES 362
                    V L   G      D +      + KL  L    C  +E        +  W E 
Sbjct:   290 HMEFYQLVHLELCGDALMWWDLLTWMLQSSPKLQVLKIYECKCEEHDYLDDPIEEHW-EE 348

Query:   363 DFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASV--PKENRAN 420
                VP CL+  +   E K     ++E+ ++ Y+L+ A  + K   ++ AS   PKE R+ 
Sbjct:   349 PSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQL-KTATFSAASYLYPKEERSR 407

Query:   421 LRESILQLPRAS 432
                 ++ + RAS
Sbjct:   408 ELNELVYMARAS 419

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
 Identities = 92/287 (32%), Positives = 140/287 (48%)

Query:    13 KRGRPKTNRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVP--NLSFD 70
             KR R K +R   D IS+LP+++LC +L Y+PTK VV +SV++ RW+N+W  VP  NLS+ 
Sbjct:     7 KRVRAKGSR-EVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYC 65

Query:    71 DRLCLRPPASTYVPLRGFADFVHTVLLRTNPAKIGKFSL-YCSR---PTNLARFYDWIAT 126
             D   +R   S Y     F  FV + +   + + +  F L Y S       LA    WI +
Sbjct:    66 D-FHVRNTFS-Y-DHNTFLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLALIRRWINS 122

Query:   127 ALMREVGEIQLYLG------QQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCV 180
              + R+V     YLG           E+P  +Y+   L  LTLD   S+  P      P +
Sbjct:   123 VVSRKVK----YLGVLDDSCDNYEFEMPPTLYTCETLVYLTLDG-LSLASPKF-VSLPSL 176

Query:   181 KILSVRLEN-PNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRS 239
             K L + +    +    E L   CP LE L++     DD       + S +L +   +  +
Sbjct:   177 KELHLSIVKFADHMALETLISQCPVLENLNINRSFCDDFE--FTCVRSQSLLSFTHVADT 234

Query:   240 EDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI 286
             ++ML    D ++ I APKL+ L +    + SF+++DL SL  V+ DI
Sbjct:   235 DEML--NEDLVVAIDAPKLKYLRLSDHRIASFILNDLASL--VEADI 277

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101635 AT3G44810 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
 Identities = 92/315 (29%), Positives = 143/315 (45%)

Query:    27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP-- 84
             ++ LPD +L H+LS + TK   +TSV++KRW+ ++    NL FDD +   P         
Sbjct:     9 LNCLPDELLVHVLSSLETKQAASTSVLSKRWRTLFAVRRNLDFDDSIISHPEVGEQNMDD 68

Query:    85 -LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQS 143
                 F DFV   L       I KFSL      +  R   WI TAL   V E+ L L   +
Sbjct:    69 VQESFRDFVDKRLAFQGSVPINKFSLIYGDKHDDVRVDRWINTALEHGVSELHLCLTSVT 128

Query:   144 RV--ELPEAIYSAACLKVLTLDSD-FSIQVPSSGTCFPCVKILSVRLENPNKSVTEN-LF 199
             R     P  ++ +  L  LTL ++ F +  PS  TC P +KIL +     ++    N L 
Sbjct:   129 RRLHRFPSNVFRSTTLVKLTLGTNLFIVYFPSD-TCLPVLKILVLDSIWFDRIKFSNVLL 187

Query:   200 CSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVR-SEDM-LFREVDYMLTITAPK 257
               CP+LE+L++  +     P  N ++SS T+K+  ++ + S D   FR V     +  P 
Sbjct:   188 AGCPALEDLTIDQKSFPGLP--N-VVSSKTVKSLSIVYKYSADFDWFRTV----ALDTPN 240

Query:   258 LESLEIYSDLLGSFVMH-DLHSLKIVKLDIMHAEWAQ--VDPYRAIQLLAGINSCKYLYL 314
             L +L +YS        H +L SL    LD+   E      +P     L+  + + + L+L
Sbjct:   241 LVTL-LYSTYARHRYRHCNLESLVNATLDLHFLENCDEAFEP-NVTDLMIAVRNVQMLHL 298

Query:   315 SAGIMSSVELHRNGG 329
             ++     +     GG
Sbjct:   299 TSSATEVISQCCKGG 313

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075372 AT3G03040 "AT3G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
 Identities = 91/270 (33%), Positives = 137/270 (50%)

Query:    25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVP 84
             D +SSLPD V C ILS++ TK   +TSV++K+W+N++  VPNL FDD   L P       
Sbjct:     2 DLLSSLPDEVRCLILSFLTTKESASTSVLSKKWRNLFALVPNLDFDDSEFLHPEEGKRER 61

Query:    85 ---LRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQ 141
                L+ F DFV  VL     + I KFSL C      AR   W+   L R+V +I L +  
Sbjct:    62 DGILQSFMDFVDRVLSLQGNSSIRKFSLKCETGVPPARVNRWLCEVLQRDVSDIDLTIDL 121

Query:   142 QSRVELPEAIYSAACLKVLTLDSDFSIQV-PSS-GTCFPCVKIL---SVRLENPNKSVTE 196
                  LPE ++ +  L  L L S F+I   P + GT  P +K L    VR+   ++ + E
Sbjct:   122 GYGYYLPEELFVSETLVNLKLKSAFNIDWWPGAEGTSLPMLKSLCVYGVRVFCDDE-LQE 180

Query:   197 NLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLI-VRSEDMLFREVDYMLTITA 255
              L C  P LEEL ++     D+      +SSATL T  +  +RSE+   + + +      
Sbjct:   181 LLPCF-PVLEELQMSNMQWLDSDET---VSSATLTTLHITGIRSENP--KSISF----DT 230

Query:   256 PKLESLEIYSDLLGS-FVMHDLHSLKIVKL 284
             P L S  +Y+D +   + + ++ +L + +L
Sbjct:   231 PNLLSF-VYTDFVAEDYPLVNMKNLSLARL 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 8.2e-23, P = 8.2e-23
 Identities = 121/437 (27%), Positives = 197/437 (45%)

Query:    27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPL- 85
             ++ LPD +L  ILS++PTK   +TS+++KRW+ ++T  PNL FD+ L L+     +    
Sbjct:     1 MNCLPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDNSLLLQSKKRKWNMRN 60

Query:    86 --RGFADFVHTVLLRTNPAKIGKFSLYCSRPT-NLARFYD---WIATALMREVGEIQLYL 139
               + F  FV + L       I  FSL       ++    D   WI  AL   V E+ L +
Sbjct:    61 IQKSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDVNRWICNALEHGVSELHLRI 120

Query:   140 GQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKIL---SVRLENPNKSVTE 196
                 R  LP  I+++  L  L+L +     V  +    P +K+L   S+  E P   +  
Sbjct:   121 DYTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVPNCISLPSLKVLFLDSIWFEVPQFLI-- 178

Query:   197 NLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTI-TA 255
                 +CP+LE+L++  + H    P +  ISS T+K  +L V      F  VDY L +   
Sbjct:   179 -FLTACPALEDLTIYQKPHSVGMPYH--ISSKTIK--RLSVTYTCGYF--VDYGLKLFNT 231

Query:   256 PKLESLEIYSDLLGSFVMH-DLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYL 314
             P +  L  YSD +     H +L SL    LDI H  +   +     +LL+GI + K L+L
Sbjct:   232 PSVVDL-YYSDYVRHKYPHMNLDSLPKATLDI-H--FLDDNAANVTELLSGIRNVKTLHL 287

Query:   315 SAGIMSSVELHRNG------GRTDRMASTANRAKK--LTELGKSCPAQEQF--GWLESDF 364
             ++  +  + L   G         +   S   R  K  L  L + CP         L+ ++
Sbjct:   288 TSSTVKVILLCCKGEIPMFENLINLKFSGKTRQWKFLLPLLLEICPNLTTLVLSGLDQNW 347

Query:   365 DVPHCLV--HTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLR 422
              V       + VK + I   QG E E  L+ Y +     ++ + ++  + +    +  L 
Sbjct:   348 FVGFRTPPNNQVKMLSIMQYQGSERELKLISYFVLKMECLQVVKVYVSSPMNDLKKMQLT 407

Query:   423 ESILQLPRASMKTTIEI 439
             E +L+LP+AS K  I++
Sbjct:   408 EDLLKLPKASPKLNIQV 424

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 89/280 (31%), Positives = 138/280 (49%)

Query:    19 TNRG--NADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLR 76
             T RG  + D IS LPD +LC ILS +PTK  V TSV++KRWK    +VP L F+      
Sbjct:     3 TKRGVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFN------ 56

Query:    77 PPASTYVPLRGFADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFY--DWIATALMREVGE 134
                S +     FA  VH  L  +    I K  L   +  +  R Y   WI  A+ R+V  
Sbjct:    57 --VSEFHGYYEFARVVHGFLDTSRETCIHKLKLAFEKKQH-DRSYLTQWIHNAVKRKVQH 113

Query:   135 IQL----YLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVRLEN 189
             + +    YLGQ+    +P ++Y+   L  L L +   + +P       P +K + + ++N
Sbjct:   114 LDIGRWSYLGQEL---IPHSLYTCETLVSLRLHN---VSLPDFDHVSLPRLKTMHL-IDN 166

Query:   190 --PNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREV 247
               PN ++ ENL  SCP LE+L+V+ ++ +      L + S +LK+  L +  +     E 
Sbjct:   167 IYPNDALLENLISSCPVLEDLNVSRDVENIVKV--LRVRSLSLKSLILALDGDRYGDIED 224

Query:   248 D-YMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI 286
             D + + I AP+L  L +  D   SFV+  + S   V +D+
Sbjct:   225 DSWEVVIDAPRLSYLSLRDDQSKSFVLSSVTSPAKVDIDV 264

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081408 AT3G44060 "AT3G44060" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
 Identities = 95/311 (30%), Positives = 148/311 (47%)

Query:    30 LPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLRPPASTYVPLRGFA 89
             LPD +L  IL  +PTK  V+TSV++KRW+ ++T   NL F D +  RP       L+ F 
Sbjct:     4 LPDDLLVQILYLLPTKEAVSTSVLSKRWRTLFTRSDNLDFHDPISGRPEDI----LKSFN 59

Query:    90 DFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYD-WIATALMREVGEIQLYLGQQS---RV 145
             DFV + L       I KFSL+    T      D WI  AL   V E+ L+L  +S     
Sbjct:    60 DFVDSSLAFQGGKHIKKFSLHTKIKTFEYHVLDRWICNALEHGVSELHLHLMHESWPWLF 119

Query:   146 ELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVRLENPNKSVTENLF-CSC 202
              +P  +++++ L  L+L S   +  PS    T  P +K+L +           N+F  +C
Sbjct:   120 SIPSKVFNSSTLVKLSLGS--RLYCPSFPPDTSLPALKVLLLDSILFRDDQLSNVFLAAC 177

Query:   203 PSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLE 262
             P+LE+L++    H    P   +ISS ++K   L V S    +    Y+LT+  P +  L 
Sbjct:   178 PALEDLTI----HHTYHP--CVISSKSIKKLSLSVNSG---YYGAGYILTLDTPSVVDL- 227

Query:   263 IYSDL-LGSFVMHDLHSLKIVKLDIMHAEW--AQVDPYRAIQ-LLAGINSCKYLYLSAGI 318
              YSD    +  +  L SL  V LD+   E    +V     ++ L+  I + K L+L+   
Sbjct:   228 YYSDSPRHNAPLFHLDSLAKVTLDLHFIENNNREVQNDADVKNLIREICNVKTLHLTCST 287

Query:   319 MSSVELHRNGG 329
             +  + ++  GG
Sbjct:   288 VEVISVYCKGG 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
pfam00646	48	pfam00646, F-box, F-box domain	5e-05
pfam08387	51	pfam08387, FBD, FBD	4e-04
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	0.002

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDR 72
            +  LPD +L  ILS +  K ++  S+++KRW+++  ++        
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 16/40 (40%), Positives = 29/40 (72%)

Query: 366 VPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKM 405
           VP CL+ +++ +E +G +G+E+E  L KY+L+ A  ++KM
Sbjct: 8   VPECLLSSLETVEWRGYRGEEEELELAKYILENARVLKKM 47

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 368 HCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQ 427
            CL+ +++ +EIKG +G E+E+ L+KY L+ A  ++K+ +  + S  +E    L+E +L 
Sbjct: 1   ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKE-LLS 59

Query: 428 LPRASMKTTIEIK 440
           LPRAS    ++  
Sbjct: 60  LPRASSSCQVQFL 72

Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.54
KOG4341	483	consensus F-box protein containing LRR [General fu	99.5
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.45
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.05
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.3
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.2
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.1
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.1
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.34
KOG4341	483	consensus F-box protein containing LRR [General fu	97.32
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.12
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.27
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.66
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.47
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.41
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.43
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.33
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	93.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.54
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.25
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.61
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.31
KOG4237	498	consensus Extracellular matrix protein slit, conta	90.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	89.37
PRK15386	426	type III secretion protein GogB; Provisional	88.43
PLN03150	623	hypothetical protein; Provisional	88.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	87.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	87.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	87.43
KOG0617	264	consensus Ras suppressor protein (contains leucine	86.39
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	85.62
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	84.56
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	83.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	83.4
PRK15386	426	type III secretion protein GogB; Provisional	82.31
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	81.06

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=2.1e-16  Score=140.67  Aligned_cols=218  Identities=20%  Similarity=0.221  Sum_probs=139.3

Q ss_pred             CCCCChHHHHHHhcCCCchhhhhhhccccchHHHhccC---CeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhcCCCCc
Q 041388           27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAV---PNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAK  103 (440)
Q Consensus        27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~  103 (440)
                      ...|||||+..||+.|+.+++.+.+.|||||+++-..-   ..+++....         ...    + +...+.++   +
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~---------i~p----~-~l~~l~~r---g  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN---------IHP----D-VLGRLLSR---G  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc---------cCh----h-HHHHHHhC---C
Confidence            57899999999999999999999999999999753321   123332222         011    1 22233333   3


Q ss_pred             eeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--Ccccccccc
Q 041388          104 IGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVK  181 (440)
Q Consensus       104 v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~  181 (440)
                      |..|++.-....+ ..++..... .+.+++++++....-....+-..+..|++|+.|+|. +..++++-  ..+.-.+|+
T Consensus       161 V~v~Rlar~~~~~-prlae~~~~-frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE-g~~LdD~I~~~iAkN~~L~  237 (419)
T KOG2120|consen  161 VIVFRLARSFMDQ-PRLAEHFSP-FRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE-GLRLDDPIVNTIAKNSNLV  237 (419)
T ss_pred             eEEEEcchhhhcC-chhhhhhhh-hhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccc-ccccCcHHHHHHhccccce
Confidence            5555555322222 222222222 223688888865322222333445569999999999 88887764  234457899


Q ss_pred             eEEEE-EE-eCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe--cccccceeEEEeecccccccccccEEEEecCC
Q 041388          182 ILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII--SSATLKTCKLIVRSEDMLFREVDYMLTITAPK  257 (440)
Q Consensus       182 ~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i--~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~  257 (440)
                      .|+|. +. ++ +.+++.++++|..|.+|+|..|....-. ....+  .+++|+.|++. +|-+.-+......+.-.+|+
T Consensus       238 ~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNls-G~rrnl~~sh~~tL~~rcp~  314 (419)
T KOG2120|consen  238 RLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLS-GYRRNLQKSHLSTLVRRCPN  314 (419)
T ss_pred             eeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhh-hhHhhhhhhHHHHHHHhCCc
Confidence            99999 54 66 8889999999999999999999531110 11122  35899999999 87322111112334456899


Q ss_pred             ceEEEEeccc
Q 041388          258 LESLEIYSDL  267 (440)
Q Consensus       258 L~~L~~~~~~  267 (440)
                      |..|+++++.
T Consensus       315 l~~LDLSD~v  324 (419)
T KOG2120|consen  315 LVHLDLSDSV  324 (419)
T ss_pred             eeeecccccc
Confidence            9999998764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.50  E-value=2e-16  Score=146.96  Aligned_cols=343  Identities=17%  Similarity=0.178  Sum_probs=205.2

Q ss_pred             cCC-CCChHHHHHHhcCCCchhhhhhhccccchHHH------hccCCeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhc
Q 041388           26 RIS-SLPDSVLCHILSYIPTKHVVATSVIAKRWKNV------WTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLR   98 (440)
Q Consensus        26 ~is-~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~   98 (440)
                      .++ .||.|++..|||+|+++++.+++.+|+-|..+      |..+.-..|..+.               ...|-..+..
T Consensus        70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv---------------~g~VV~~~~~  134 (483)
T KOG4341|consen   70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV---------------DGGVVENMIS  134 (483)
T ss_pred             cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC---------------CCcceehHhh
Confidence            344 59999999999999999999999999999865      4333322222211               1223334445


Q ss_pred             CCCCceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccc-cccccEEEecCCccccCCC---Cc
Q 041388           99 TNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYS-AACLKVLTLDSDFSIQVPS---SG  174 (440)
Q Consensus        99 ~~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~l~~~~---~~  174 (440)
                      +.|+.+++++++.........+......  -+++++|.+..+.......-..+.. |++|++|.|.+|..+++..   .+
T Consensus       135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~--CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  135 RCGGFLKELSLRGCRAVGDSSLRTFASN--CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             hhccccccccccccccCCcchhhHHhhh--CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence            5566899999998776543333322211  1377888776543211111222323 8888888888655555532   24


Q ss_pred             ccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE-e--cccccceeEEEeeccccccccccc
Q 041388          175 TCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI-I--SSATLKTCKLIVRSEDMLFREVDY  249 (440)
Q Consensus       175 ~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~-i--~~~~L~~L~i~~~~~~~~~~~~~~  249 (440)
                      .+|++|+.|+++ +. ++ +.+++.+..+|..|+.+.+++|.....  +.+. +  ..+-+.++++. .|..+ -+....
T Consensus       213 ~gC~kL~~lNlSwc~qi~-~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~-~c~~l-TD~~~~  287 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQIS-GNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQ-HCNQL-TDEDLW  287 (483)
T ss_pred             HhhhhHHHhhhccCchhh-cCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchh-hhccc-cchHHH
Confidence            578889999988 44 45 677888888888888888888854222  2221 1  22345555555 55111 001111


Q ss_pred             EEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccc------eeEee
Q 041388          250 MLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGI------MSSVE  323 (440)
Q Consensus       250 ~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~------~~~~~  323 (440)
                      .+.-.+-.|+.+.++++...          .+             ...  ..+.+++++|+.|.+....      .+.+.
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~----------~d-------------~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~  342 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDI----------TD-------------EVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLG  342 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCC----------ch-------------HHH--HHHhcCCCceEEEeccccchhhhhhhhhhh
Confidence            22223455666666543210          00             000  5556666777777664321      11111


Q ss_pred             -ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccC-----C---CCCccccccceeEEEEEeeecCcchHHHH
Q 041388          324 -LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLES-----D---FDVPHCLVHTVKNIEIKGVQGDEDERPLL  392 (440)
Q Consensus       324 -~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~-----~---~~~~~c~~~~L~~v~i~~~~~~~~~~~~~  392 (440)
                       .+..|+.|. +-+ .......+.++-.+||.|++|+ ..|.     +   .....|.+.+|+.+++.+......  +..
T Consensus       343 rn~~~Le~l~~e~~-~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~L  419 (483)
T KOG4341|consen  343 RNCPHLERLDLEEC-GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATL  419 (483)
T ss_pred             cCChhhhhhccccc-ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHH
Confidence             455555555 333 1233346899999999999999 5332     2   234468889999999998876544  233


Q ss_pred             HHHHhhccccceEEEEeecCCChhhHH
Q 041388          393 KYLLQFAAAMEKMLMWAKASVPKENRA  419 (440)
Q Consensus       393 ~~ll~~a~~L~~m~i~~~~~~~~~~~~  419 (440)
                      ++ +.++++||++.++......++...
T Consensus       420 e~-l~~c~~Leri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  420 EH-LSICRNLERIELIDCQDVTKEAIS  445 (483)
T ss_pred             HH-HhhCcccceeeeechhhhhhhhhH
Confidence            33 457899999999988876665443

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.45  E-value=2.7e-13  Score=99.04  Aligned_cols=72  Identities=32%  Similarity=0.587  Sum_probs=64.8

Q ss_pred             cccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEeecCCChhhHHHHHHHHhcccCcCCcceEEeC
Q 041388          368 HCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK  440 (440)
Q Consensus       368 ~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~l~~~~r~s~~~~i~~~  440 (440)
                      +|+.+||+.|+|.+|.|..+|+++++||++||+.||+|+|..+....++... +.++|..++|||++|+|.|.
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~-i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLE-ILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHH-HHHHHHhCcCCCCceEEEeC
Confidence            4888999999999999999999999999999999999999998765544444 88999999999999999984

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.05  E-value=2.3e-10  Score=76.73  Aligned_cols=45  Identities=40%  Similarity=0.706  Sum_probs=43.2

Q ss_pred             CCCccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEE
Q 041388          364 FDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMW  408 (440)
Q Consensus       364 ~~~~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~  408 (440)
                      ..+|+|+.+||+.|++.||.|.++|+++++|+++||+.||+|+|.
T Consensus         6 ~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    6 SSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             CCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            568999999999999999999999999999999999999999986

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.68  E-value=1.1e-08  Score=67.75  Aligned_cols=35  Identities=37%  Similarity=0.815  Sum_probs=31.0

Q ss_pred             CCCCChHHHHHHhcCCCchhhhhhhccccchHHHh
Q 041388           27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVW   61 (440)
Q Consensus        27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw   61 (440)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.30  E-value=1.3e-06  Score=96.48  Aligned_cols=149  Identities=16%  Similarity=0.114  Sum_probs=82.2

Q ss_pred             CCcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          130 REVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ..++.|++..+. -...+|..++ .+++|++|+|+++......| ...+++|++|+|. +.+.  ..+...+..++.|+.
T Consensus        93 ~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~--~~~p~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLS--GEIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCccc--ccCChHHhcCCCCCE
Confidence            367777775322 1236777777 58888888888433222333 4567888888888 7665  234445677888888


Q ss_pred             EEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCeeEEEE
Q 041388          208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKL  284 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i  284 (440)
                      |+|.+|...+..+.. --..++|+.|.+. +|   .+........-..++|+.|.++++....   ..+.++++|+.+++
T Consensus       169 L~L~~n~l~~~~p~~-~~~l~~L~~L~L~-~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        169 LDLGGNVLVGKIPNS-LTNLTSLEFLTLA-SN---QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             EECccCcccccCChh-hhhCcCCCeeecc-CC---CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            888876432110011 1134677778777 55   2210000011234566666666543221   12345666666666


Q ss_pred             EEe
Q 041388          285 DIM  287 (440)
Q Consensus       285 ~~~  287 (440)
                      ...
T Consensus       244 ~~n  246 (968)
T PLN00113        244 VYN  246 (968)
T ss_pred             cCc
Confidence            443

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.20  E-value=3.4e-07  Score=60.81  Aligned_cols=37  Identities=38%  Similarity=0.782  Sum_probs=31.2

Q ss_pred             CCCCChHHHHHHhcCCCchhhhhhhccccchHHHhcc
Q 041388           27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTA   63 (440)
Q Consensus        27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~   63 (440)
                      +++||+|++.+|+++|+.+|.++.+.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5679999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.10  E-value=1.5e-06  Score=55.51  Aligned_cols=33  Identities=33%  Similarity=0.731  Sum_probs=31.2

Q ss_pred             CChHHHHHHhcCCCchhhhhhhccccchHHHhc
Q 041388           30 LPDSVLCHILSYIPTKHVVATSVIAKRWKNVWT   62 (440)
Q Consensus        30 LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~   62 (440)
                      ||+|++.+|+++|+.+|+.+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998764

>PLN03210 Resistant to P

Probab=98.10  E-value=4.8e-06  Score=92.94  Aligned_cols=13  Identities=8%  Similarity=0.394  Sum_probs=7.1

Q ss_pred             ccceeEEEEEeee
Q 041388          371 VHTVKNIEIKGVQ  383 (440)
Q Consensus       371 ~~~L~~v~i~~~~  383 (440)
                      ..+|+.+.+.++.
T Consensus       868 l~~L~~L~L~~C~  880 (1153)
T PLN03210        868 FSNLSFLDMNGCN  880 (1153)
T ss_pred             CCCCCEEECCCCC
Confidence            3456666665543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.93  E-value=1.6e-05  Score=87.90  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=40.1

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      +++.|++..+. ....+|..+..+++|++|+|.++..... |.....+++|+.|+|. ..+.  ..+...+..++.|+.|
T Consensus       165 ~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        165 SLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS--GEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC--CcCChhHhcCCCCCEE
Confidence            66677664321 1124555555666666666663322222 2223445566666666 5544  1222334555566666


Q ss_pred             EEeee
Q 041388          209 SVTCE  213 (440)
Q Consensus       209 ~L~~c  213 (440)
                      ++.+|
T Consensus       242 ~L~~n  246 (968)
T PLN00113        242 DLVYN  246 (968)
T ss_pred             ECcCc
Confidence            65554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.76  E-value=7.2e-06  Score=80.55  Aligned_cols=112  Identities=16%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             eeecCccccc-cccccEEEecCCccccCC--CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCC
Q 041388          144 RVELPEAIYS-AACLKVLTLDSDFSIQVP--SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTP  219 (440)
Q Consensus       144 ~~~lp~~l~~-~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~  219 (440)
                      ...+|..+|+ .+.|+.|+|. .-.+...  -.+.++++|+.|.|. ..+.  .--+.++-+|..+|+|+|.......+.
T Consensus       209 ittLp~r~Fk~L~~L~~LdLn-rN~irive~ltFqgL~Sl~nlklqrN~I~--kL~DG~Fy~l~kme~l~L~~N~l~~vn  285 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLN-RNRIRIVEGLTFQGLPSLQNLKLQRNDIS--KLDDGAFYGLEKMEHLNLETNRLQAVN  285 (873)
T ss_pred             ccccCHHHhhhcchhhhhhcc-ccceeeehhhhhcCchhhhhhhhhhcCcc--cccCcceeeecccceeecccchhhhhh
Confidence            4566666666 6777777776 3233222  125566777777777 5443  111123346777777777664321110


Q ss_pred             CCcEEecccccceeEEEeecccccccccccEEEEe----cCCceEEEEeccc
Q 041388          220 PPNLIISSATLKTCKLIVRSEDMLFREVDYMLTIT----APKLESLEIYSDL  267 (440)
Q Consensus       220 ~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~----~p~L~~L~~~~~~  267 (440)
                      .++ -..-..|+.|+++ .+   .    .+.+.++    +|+|+.|.++.+.
T Consensus       286 ~g~-lfgLt~L~~L~lS-~N---a----I~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  286 EGW-LFGLTSLEQLDLS-YN---A----IQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             ccc-ccccchhhhhccc-hh---h----hheeecchhhhcccceeEeccccc
Confidence            000 1123456667666 33   1    2444443    5777777776543

>PLN03210 Resistant to P

Probab=97.57  E-value=0.00028  Score=79.02  Aligned_cols=54  Identities=15%  Similarity=0.117  Sum_probs=24.0

Q ss_pred             cccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          156 CLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       156 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +|+.|.+. ...+...|....+.+|+.|+|. ..+. .  +..-+..++.|+.|+|.+|
T Consensus       590 ~Lr~L~~~-~~~l~~lP~~f~~~~L~~L~L~~s~l~-~--L~~~~~~l~~Lk~L~Ls~~  644 (1153)
T PLN03210        590 KLRLLRWD-KYPLRCMPSNFRPENLVKLQMQGSKLE-K--LWDGVHSLTGLRNIDLRGS  644 (1153)
T ss_pred             ccEEEEec-CCCCCCCCCcCCccCCcEEECcCcccc-c--cccccccCCCCCEEECCCC
Confidence            45555554 2222222222334556666665 4433 1  1111334566666666554

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.54  E-value=4.7e-05  Score=75.03  Aligned_cols=112  Identities=19%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             ecCccccc-cccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388          146 ELPEAIYS-AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP  221 (440)
Q Consensus       146 ~lp~~l~~-~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~  221 (440)
                      ++|..-|. ..++++|.|. .-+++...  .+.+|.+|.+|.|. .+++ . -=...+++.|.||.|.|......-+  +
T Consensus       163 ~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrit-t-Lp~r~Fk~L~~L~~LdLnrN~iriv--e  237 (873)
T KOG4194|consen  163 EIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRIT-T-LPQRSFKRLPKLESLDLNRNRIRIV--E  237 (873)
T ss_pred             cccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCccc-c-cCHHHhhhcchhhhhhccccceeee--h
Confidence            44444444 4678888888 44444432  46677788888888 7776 2 2245677788888888877432111  2


Q ss_pred             cEEec-ccccceeEEEeecccccccccccEEEEecCCceEEEEecc
Q 041388          222 NLIIS-SATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSD  266 (440)
Q Consensus       222 ~l~i~-~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~  266 (440)
                      .+... -++|+.|.+. .+   +++.-....-..+-+++.|.+..+
T Consensus       238 ~ltFqgL~Sl~nlklq-rN---~I~kL~DG~Fy~l~kme~l~L~~N  279 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQ-RN---DISKLDDGAFYGLEKMEHLNLETN  279 (873)
T ss_pred             hhhhcCchhhhhhhhh-hc---CcccccCcceeeecccceeecccc
Confidence            22222 3677777776 44   222111222233455666666443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.38  E-value=6e-05  Score=69.81  Aligned_cols=256  Identities=18%  Similarity=0.111  Sum_probs=131.2

Q ss_pred             HHHHHHHhcCCCCceeeEEEEeeCCCChhhHHHHHHHHHcC--CcEEEEEEE-ccC-ceeecCccccccccccEEEecCC
Q 041388           90 DFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMR--EVGEIQLYL-GQQ-SRVELPEAIYSAACLKVLTLDSD  165 (440)
Q Consensus        90 ~~v~~~L~~~~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~--~l~~L~l~~-~~~-~~~~lp~~l~~~~~L~~L~L~~~  165 (440)
                      .-|-..+....  .+.++.++.  ..-..-.++|+..+.++  .+++.++.- ..+ ...++|..+      +.|     
T Consensus        20 ~~v~~~~~~~~--s~~~l~lsg--nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L------~~l-----   84 (382)
T KOG1909|consen   20 KDVEEELEPMD--SLTKLDLSG--NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL------KML-----   84 (382)
T ss_pred             hhHHHHhcccC--ceEEEeccC--CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH------HHH-----
Confidence            34555555544  377766663  33366678999888873  233333321 111 122333311      000     


Q ss_pred             ccccCCCCcccccccceEEEE-EEeC--CCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccc
Q 041388          166 FSIQVPSSGTCFPCVKILSVR-LENP--NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDM  242 (440)
Q Consensus       166 ~~l~~~~~~~~~~~L~~L~L~-~~~~--~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~  242 (440)
                           .+...++|.|++|+|+ ..+.  +-..+..++++|..|++|.|.+|...... +  ..-+..|..|..       
T Consensus        85 -----~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a-g--~~l~~al~~l~~-------  149 (382)
T KOG1909|consen   85 -----SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA-G--GRLGRALFELAV-------  149 (382)
T ss_pred             -----HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH-H--HHHHHHHHHHHH-------
Confidence                 0013345667777777 5554  23568999999999999999999321100 0  000111111110       


Q ss_pred             cccccccEEEEecCCceEEEEeccccccE-------EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEe
Q 041388          243 LFREVDYMLTITAPKLESLEIYSDLLGSF-------VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLS  315 (440)
Q Consensus       243 ~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-------~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~  315 (440)
                            ....-+.|+|+.|.+..+.....       .+...|.|.++.+..........  .....-++.+++++.|+|.
T Consensus       150 ------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~  221 (382)
T KOG1909|consen  150 ------NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLR  221 (382)
T ss_pred             ------HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecc
Confidence                  11122345566655543322211       12334666666654433321001  0014556789999999998


Q ss_pred             ccceeEee---------ecccccccc-ccc--ccchhHHHHHHHhccCCCccccc-cccC-C----CCCcccc--cccee
Q 041388          316 AGIMSSVE---------LHRNGGRTD-RMA--STANRAKKLTELGKSCPAQEQFG-WLES-D----FDVPHCL--VHTVK  375 (440)
Q Consensus       316 ~~~~~~~~---------~f~~L~~L~-~~~--~~~~~~~~l~~lL~~~p~L~~L~-~~~~-~----~~~~~c~--~~~L~  375 (440)
                      .+++..-.         .|++|+.|. ..|  ........+..+-+..|+|+.|. ..+. .    .....|.  ..+|+
T Consensus       222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~  301 (382)
T KOG1909|consen  222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE  301 (382)
T ss_pred             cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence            88665321         566666666 444  12333445566777789999998 5421 1    1111222  45677


Q ss_pred             EEEEEeee
Q 041388          376 NIEIKGVQ  383 (440)
Q Consensus       376 ~v~i~~~~  383 (440)
                      .+.+.|.+
T Consensus       302 kLnLngN~  309 (382)
T KOG1909|consen  302 KLNLNGNR  309 (382)
T ss_pred             HhcCCccc
Confidence            77777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.34  E-value=2.8e-05  Score=74.29  Aligned_cols=39  Identities=5%  Similarity=0.071  Sum_probs=19.5

Q ss_pred             cceeEEEEEeeecC-cchHHHHHHHHhhccccceEEEEeec
Q 041388          372 HTVKNIEIKGVQGD-EDERPLLKYLLQFAAAMEKMLMWAKA  411 (440)
Q Consensus       372 ~~L~~v~i~~~~~~-~~~~~~~~~ll~~a~~L~~m~i~~~~  411 (440)
                      ..|+++.+.+..-. .....++++ +.+.+.|+.+.+....
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~  289 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNK  289 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCC
Confidence            45666666654422 222333343 3333667777665533

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.32  E-value=3.3e-06  Score=79.71  Aligned_cols=60  Identities=15%  Similarity=0.104  Sum_probs=26.6

Q ss_pred             cccccEEEecCCccccCCC---CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          154 AACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      |+++++|.+.++..+++..   .+..++.|+.|.|. +..-++..+..+..+||+|++|.+..|
T Consensus       163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc  226 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC  226 (483)
T ss_pred             CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence            5555555555443333322   12234445555555 332224444444455555555555554

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.31  E-value=0.0002  Score=40.23  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=22.8

Q ss_pred             ccceEEEE-EEeCCCcchhhhhccCC
Q 041388          179 CVKILSVR-LENPNKSVTENLFCSCP  203 (440)
Q Consensus       179 ~L~~L~L~-~~~~~~~~l~~lls~cp  203 (440)
                      +||+|+|. |.+.++..++.++|+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            58999999 99986678999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=6.1e-05  Score=68.36  Aligned_cols=155  Identities=17%  Similarity=0.145  Sum_probs=96.4

Q ss_pred             ceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceee-cCccccccccccEEEecCCccccCCCC---cc-cc
Q 041388          103 KIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVE-LPEAIYSAACLKVLTLDSDFSIQVPSS---GT-CF  177 (440)
Q Consensus       103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~-lp~~l~~~~~L~~L~L~~~~~l~~~~~---~~-~~  177 (440)
                      .++.+++..-.-.  +++.  ...|-.++++++++..+.+.... +-..+.+|+.|..|+|+ +|.+..+..   .. --
T Consensus       211 kLk~lSlEg~~Ld--D~I~--~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls-Wc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  211 KLKNLSLEGLRLD--DPIV--NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS-WCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             hhhhccccccccC--cHHH--HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCch-HhhccchhhhHHHhhhc
Confidence            4666666543322  2221  22334458999998766543222 22233459999999999 666544320   11 13


Q ss_pred             cccceEEEE-E-EeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE--ecccccceeEEEeecccccccccccEEEE
Q 041388          178 PCVKILSVR-L-ENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI--ISSATLKTCKLIVRSEDMLFREVDYMLTI  253 (440)
Q Consensus       178 ~~L~~L~L~-~-~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~--i~~~~L~~L~i~~~~~~~~~~~~~~~l~~  253 (440)
                      +.|+.|+|+ + +.-.+..+..+...||.|-+|+|.+|..-.-  ..+.  ...+.|++|.+. .|+  ++.+ ...+.+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSls-RCY--~i~p-~~~~~l  359 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLS-RCY--DIIP-ETLLEL  359 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehh-hhc--CCCh-HHeeee
Confidence            789999999 3 3333678889999999999999999854111  2222  245889999998 882  2322 233333


Q ss_pred             -ecCCceEEEEecccc
Q 041388          254 -TAPKLESLEIYSDLL  268 (440)
Q Consensus       254 -~~p~L~~L~~~~~~~  268 (440)
                       ..|.|.+|.+.|+..
T Consensus       360 ~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ccCcceEEEEeccccC
Confidence             478888888877643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.12  E-value=0.00028  Score=67.34  Aligned_cols=248  Identities=17%  Similarity=0.116  Sum_probs=140.0

Q ss_pred             ccccccEEEecCCccccCC------CCcccccccceEEEE-EEeCC-Ccc---hhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388          153 SAACLKVLTLDSDFSIQVP------SSGTCFPCVKILSVR-LENPN-KSV---TENLFCSCPSLEELSVTCELHDDTPPP  221 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~L~-~~~~~-~~~---l~~lls~cp~Le~L~L~~c~~~~~~~~  221 (440)
                      ....|+.|.+. ++.+...      .....+++|++|.+. ..+.. ...   +...+..++.|+.|.|.+|........
T Consensus        21 ~l~~L~~l~l~-~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          21 KLLCLQVLRLE-GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHhhccEEeec-CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            36679999999 5555321      123456779999998 66541 122   234556688999999999854211001


Q ss_pred             cEE--ecccccceeEEEeecccccccc-cccEE---EEec-CCceEEEEecccccc-------EEeeCCCCeeEEEEEEe
Q 041388          222 NLI--ISSATLKTCKLIVRSEDMLFRE-VDYML---TITA-PKLESLEIYSDLLGS-------FVMHDLHSLKIVKLDIM  287 (440)
Q Consensus       222 ~l~--i~~~~L~~L~i~~~~~~~~~~~-~~~~l---~~~~-p~L~~L~~~~~~~~~-------~~~~~~~~L~~~~i~~~  287 (440)
                      .+.  ..+++|++|.+. +|   .+.. +...+   .... |+|+.|.++++....       ..+..+++|+.+++..+
T Consensus       100 ~~~~l~~~~~L~~L~ls-~~---~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116         100 VLESLLRSSSLQELKLN-NN---GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             HHHHHhccCcccEEEee-CC---ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence            110  011559999998 76   2210 00111   1123 899999998765431       12345567888877654


Q ss_pred             ecccccCCchhh-hhhhcccccccEEEEeccceeEee---------ecccccccc-cccccchhHHHHHHHhcc----CC
Q 041388          288 HAEWAQVDPYRA-IQLLAGINSCKYLYLSAGIMSSVE---------LHRNGGRTD-RMASTANRAKKLTELGKS----CP  352 (440)
Q Consensus       288 ~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~---------~f~~L~~L~-~~~~~~~~~~~l~~lL~~----~p  352 (440)
                      ....   ..... ...+..+++++.|.++...+....         .+++|++|+ ..+  ......+..+...    .+
T Consensus       176 ~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~~~~l~~~~~~~~~  250 (319)
T cd00116         176 GIGD---AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN--NLTDAGAAALASALLSPNI  250 (319)
T ss_pred             CCch---HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC--cCchHHHHHHHHHHhccCC
Confidence            3211   00011 233445579999999876553211         455677776 433  3333344444444    47


Q ss_pred             Cccccc-cccC----C-CCCcccc--ccceeEEEEEeee-cCcchHHHHHHHHhhccccceEEEEee
Q 041388          353 AQEQFG-WLES----D-FDVPHCL--VHTVKNIEIKGVQ-GDEDERPLLKYLLQFAAAMEKMLMWAK  410 (440)
Q Consensus       353 ~L~~L~-~~~~----~-~~~~~c~--~~~L~~v~i~~~~-~~~~~~~~~~~ll~~a~~L~~m~i~~~  410 (440)
                      .|++|. ..|.    + ....+..  ..+|+.+.+.+-. +.+....+++-+..+.+.|+.+.|...
T Consensus       251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            888888 4331    1 1111111  2568888776433 344456788888888888888877543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.00  E-value=2.6e-05  Score=77.37  Aligned_cols=69  Identities=17%  Similarity=0.149  Sum_probs=39.7

Q ss_pred             ceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEee
Q 041388          143 SRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTC  212 (440)
Q Consensus       143 ~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~  212 (440)
                      ....+|..+..|.+|.+|.+.++.......-...+|+|+.+.++ ..+. ..++..=+-...-|..|+|+.
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK-nsGiP~diF~l~dLt~lDLSh  112 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK-NSGIPTDIFRLKDLTILDLSH  112 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc-cCCCCchhcccccceeeecch
Confidence            34667777777888888888744333333335567778877777 6665 333333233333444444433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=3.9e-05  Score=73.00  Aligned_cols=159  Identities=14%  Similarity=0.105  Sum_probs=72.1

Q ss_pred             ccccccccEEEecCCccccC---CCCcccccccceEEEE-EEeC--CCcchhhhhccCCCcceEEEeeeeCC--CCCCCc
Q 041388          151 IYSAACLKVLTLDSDFSIQV---PSSGTCFPCVKILSVR-LENP--NKSVTENLFCSCPSLEELSVTCELHD--DTPPPN  222 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~~L~L~-~~~~--~~~~l~~lls~cp~Le~L~L~~c~~~--~~~~~~  222 (440)
                      +-.|++++.|+|+++.--..   ......+|+|+.|+|+ ..+.  .+.....   ..++|+.|.|..|...  ++  .+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V--~~  216 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDV--QW  216 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHH--HH
Confidence            33467777777763221111   1123456777777777 5543  1111111   4566667777776321  11  22


Q ss_pred             EEecccccceeEEEeecccccccccccEEEE-ecCCceEEEEecccccc----EEeeCCCCeeEEEEEEeecccccCCch
Q 041388          223 LIISSATLKTCKLIVRSEDMLFREVDYMLTI-TAPKLESLEIYSDLLGS----FVMHDLHSLKIVKLDIMHAEWAQVDPY  297 (440)
Q Consensus       223 l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~-~~p~L~~L~~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~  297 (440)
                      +....|+|+.|.+. .+... +   ...... ....|+.|+++++....    +....+|.|..+.+..+.... ...+.
T Consensus       217 ~~~~fPsl~~L~L~-~N~~~-~---~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s-i~~~d  290 (505)
T KOG3207|consen  217 ILLTFPSLEVLYLE-ANEII-L---IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS-IAEPD  290 (505)
T ss_pred             HHHhCCcHHHhhhh-ccccc-c---eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch-hcCCC
Confidence            33455677777666 33100 0   000000 12356667766654322    234556666655554443321 11110


Q ss_pred             hh-hhhhcccccccEEEEecccee
Q 041388          298 RA-IQLLAGINSCKYLYLSAGIMS  320 (440)
Q Consensus       298 ~~-~~~l~~~~~l~~L~l~~~~~~  320 (440)
                      .. ..-...++.++.|.+..+.+.
T Consensus       291 ~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  291 VESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             ccchhhhcccccceeeecccCccc
Confidence            00 222334566666666655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0003  Score=67.11  Aligned_cols=188  Identities=14%  Similarity=0.073  Sum_probs=114.5

Q ss_pred             CcEEEEEEEccCce-eecCccccccccccEEEecCCccccCCC---CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          131 EVGEIQLYLGQQSR-VELPEAIYSAACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       131 ~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      ++++|++...--.. ..+-..+-..++|+.|+|+ .-++..+.   ....+++||+|.|. |.++ .++++.++..||.|
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSL  224 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhhhhheEEeccCCCC-HHHHHHHHHhCCcH
Confidence            67777774311000 1111122236889999999 44454443   12368999999999 9999 89999999999999


Q ss_pred             ceEEEeeeeCCCCCCCcEEe---cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEe---------
Q 041388          206 EELSVTCELHDDTPPPNLII---SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVM---------  273 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~l~i---~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~---------  273 (440)
                      +.|.|....  ..  ..-..   ...+|+.|++. +.-.+.+  +.....-..|+|+.|.++.+...++-.         
T Consensus       225 ~~L~L~~N~--~~--~~~~~~~~i~~~L~~LdLs-~N~li~~--~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  225 EVLYLEANE--II--LIKATSTKILQTLQELDLS-NNNLIDF--DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             HHhhhhccc--cc--ceecchhhhhhHHhhcccc-CCccccc--ccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence            999998852  12  11111   23689999998 6522222  223445567899999887665444322         


Q ss_pred             eCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee---------Eeeecccccccc
Q 041388          274 HDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS---------SVELHRNGGRTD  332 (440)
Q Consensus       274 ~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~---------~~~~f~~L~~L~  332 (440)
                      ..+|+|+.+.+....... +..    .+-+..+++++.|.+..+++.         ++..++.|..|.
T Consensus       298 ~~f~kL~~L~i~~N~I~~-w~s----l~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN  360 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNIRD-WRS----LNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLN  360 (505)
T ss_pred             cccccceeeecccCcccc-ccc----cchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhc
Confidence            446788877776554421 000    233445566777776555332         233666666666

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.34  E-value=0.00015  Score=73.27  Aligned_cols=131  Identities=17%  Similarity=0.120  Sum_probs=68.2

Q ss_pred             CcEEEEEEEccCce-eecCccccccccccEEEecCCc-cccCC-----CCcccccccceEEEE-EE-eCCCcchhhhhcc
Q 041388          131 EVGEIQLYLGQQSR-VELPEAIYSAACLKVLTLDSDF-SIQVP-----SSGTCFPCVKILSVR-LE-NPNKSVTENLFCS  201 (440)
Q Consensus       131 ~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~~~-~l~~~-----~~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~  201 (440)
                      +++++.+..++... ..+-.....|+.|+.|++++++ .....     .....+++|+.|++. +. ++ |..+..+...
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l~~~  267 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSALASR  267 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHHHhh
Confidence            55555554433211 1122333457788888887421 11111     123355778888888 66 55 7777777777


Q ss_pred             CCCcceEEEeeeeC-CCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEe
Q 041388          202 CPSLEELSVTCELH-DDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIY  264 (440)
Q Consensus       202 cp~Le~L~L~~c~~-~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~  264 (440)
                      ||.||.|.+.+|.. .+.....+.-.+++|++|.+. .|... -+.+...+...+|+|+.|.+.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~-~c~~~-~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLS-GCHGL-TDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeee-cCccc-hHHHHHHHHHhCcchhhhhhh
Confidence            88888888777752 111001222245777777777 66221 011122223345556555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.27  E-value=0.0028  Score=54.44  Aligned_cols=40  Identities=10%  Similarity=0.090  Sum_probs=18.8

Q ss_pred             hhhcccccccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccCCCccccc
Q 041388          301 QLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       301 ~~l~~~~~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ..++.+++++.|++.++.+.                  .....=..++..+|+|+.|.
T Consensus       107 ~~L~~l~~L~~L~L~~NPv~------------------~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  107 EPLSSLPKLRVLSLEGNPVC------------------EKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             GGGGG-TT--EEE-TT-GGG------------------GSTTHHHHHHHH-TT-SEET
T ss_pred             HHHHcCCCcceeeccCCccc------------------chhhHHHHHHHHcChhheeC
Confidence            34556666666666544321                  11223445777889999988

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.19  E-value=0.0044  Score=65.61  Aligned_cols=115  Identities=15%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +..+|.+...  ....+|..+.  ++|+.|+|. +..+...| ..-+++|++|+|. +.+. .  +..-  -.+.|+.|.
T Consensus       179 ~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls-~N~LtsLP-~~l~~nL~~L~Ls~N~Lt-s--LP~~--l~~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKIL--GLTTIPACIP--EQITTLILD-NNELKSLP-ENLQGNIKTLYANSNQLT-S--IPAT--LPDTIQEME  247 (754)
T ss_pred             CceEEEeCCC--CcCcCCcccc--cCCcEEEec-CCCCCcCC-hhhccCCCEEECCCCccc-c--CChh--hhccccEEE
Confidence            4555555321  2334555432  467888888 34444444 2234678888888 6654 1  1111  124677777


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEe-cCCceEEEEecccc
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTIT-APKLESLEIYSDLL  268 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~-~p~L~~L~~~~~~~  268 (440)
                      |.+|....++ ..  + ..+|+.|.+. ++   .+.    .+.-. .++|+.|.++++..
T Consensus       248 Ls~N~L~~LP-~~--l-~s~L~~L~Ls-~N---~L~----~LP~~l~~sL~~L~Ls~N~L  295 (754)
T PRK15370        248 LSINRITELP-ER--L-PSALQSLDLF-HN---KIS----CLPENLPEELRYLSVYDNSI  295 (754)
T ss_pred             CcCCccCcCC-hh--H-hCCCCEEECc-CC---ccC----ccccccCCCCcEEECCCCcc
Confidence            7776432221 11  1 2467777776 44   221    11111 24677777766543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.84  E-value=0.0054  Score=64.34  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=44.7

Q ss_pred             cccccEEEecCCccccC-CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeC
Q 041388          154 AACLKVLTLDSDFSIQV-PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELH  215 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~-~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~  215 (440)
                      -.+|++|+++|.-.+.. .+  ....||+|++|.+. ..+. .+++..+..++|+|..|+|+++..
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~TnI  185 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGTNI  185 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-chhHHHHhhccCccceeecCCCCc
Confidence            35778888875322211 11  23469999999999 8888 566889999999999999999743

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.66  E-value=0.0055  Score=42.62  Aligned_cols=56  Identities=20%  Similarity=0.303  Sum_probs=35.3

Q ss_pred             ccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          155 ACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ++|++|.+.++ .+...+  .+.++++|++|++. ..+.  ..-...+.++|.|++|.+.++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcCC
Confidence            46777777743 443322  34567788888887 5554  222345677888888888765

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.48  E-value=0.0075  Score=51.86  Aligned_cols=79  Identities=23%  Similarity=0.203  Sum_probs=23.4

Q ss_pred             CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      ++++|++....   ..--..+. .+.+|+.|+|+ +..+........++.|++|.+. ..+. +-. ..+...||.|++|
T Consensus        20 ~~~~L~L~~n~---I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~l~~L~~L~~L~L~~N~I~-~i~-~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQ---ISTIENLGATLDKLEVLDLS-NNQITKLEGLPGLPRLKTLDLSNNRIS-SIS-EGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-T-TS--S--TT----TT--EEE--SS----S-C-HHHHHH-TT--EE
T ss_pred             ccccccccccc---cccccchhhhhcCCCEEECC-CCCCccccCccChhhhhhcccCCCCCC-ccc-cchHHhCCcCCEE
Confidence            45566664321   11112344 36788889998 5555555546678889999999 7776 211 2334578999999


Q ss_pred             EEeeeeC
Q 041388          209 SVTCELH  215 (440)
Q Consensus       209 ~L~~c~~  215 (440)
                      .+.+...
T Consensus        94 ~L~~N~I  100 (175)
T PF14580_consen   94 YLSNNKI  100 (175)
T ss_dssp             E-TTS--
T ss_pred             ECcCCcC
Confidence            9877543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.006  Score=55.75  Aligned_cols=228  Identities=13%  Similarity=0.166  Sum_probs=126.6

Q ss_pred             cccEEEecCCccccCCC----CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCC-CCCCcEEecccc
Q 041388          156 CLKVLTLDSDFSIQVPS----SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDD-TPPPNLIISSAT  229 (440)
Q Consensus       156 ~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~-~~~~~l~i~~~~  229 (440)
                      -+.-|.+. ++.++...    .......++.|+|. ..+++-..+..++...|+|+.|+|....... +  ..+.....+
T Consensus        46 a~ellvln-~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~n  122 (418)
T KOG2982|consen   46 ALELLVLN-GSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKN  122 (418)
T ss_pred             chhhheec-CCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccc
Confidence            44455566 55554433    12356789999999 8888667889999999999999998753211 1  222234467


Q ss_pred             cceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEee-CC-----CCeeEEEEEEeecccccCCchhh-hhh
Q 041388          230 LKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMH-DL-----HSLKIVKLDIMHAEWAQVDPYRA-IQL  302 (440)
Q Consensus       230 L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~-~~-----~~L~~~~i~~~~~~~~~~~~~~~-~~~  302 (440)
                      |++|.+. +. ...+.. ..+..-+.|.++.|+++.+....+-+. ++     +.+..+....|..     ....+ ..+
T Consensus       123 l~~lVLN-gT-~L~w~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-----~~w~~~~~l  194 (418)
T KOG2982|consen  123 LRVLVLN-GT-GLSWTQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-----QLWLNKNKL  194 (418)
T ss_pred             eEEEEEc-CC-CCChhh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH-----HHHHHHHhH
Confidence            8888886 54 222311 233444578888888776533322110 00     0111111111100     00112 566


Q ss_pred             hcccccccEEEEeccceeEee------ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCC-CC-----Ccc
Q 041388          303 LAGINSCKYLYLSAGIMSSVE------LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESD-FD-----VPH  368 (440)
Q Consensus       303 l~~~~~l~~L~l~~~~~~~~~------~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~-----~~~  368 (440)
                      -+-++++..+.++...++...      +|+.+.-|. .-. .-.+|+.+- -|..+|.|..|. . +.+ .+     .+.
T Consensus       195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~-~~Pl~d~l~~~err  271 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVS-ENPLSDPLRGGERR  271 (418)
T ss_pred             HhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHH-HHcCCchhheeecc-CCcccccccCCcce
Confidence            778999999999888777655      555555554 322 133555544 356688888888 3 223 11     111


Q ss_pred             c-cccceeEEEEEe---ee---cCcchHHHHHHHHh
Q 041388          369 C-LVHTVKNIEIKG---VQ---GDEDERPLLKYLLQ  397 (440)
Q Consensus       369 c-~~~~L~~v~i~~---~~---~~~~~~~~~~~ll~  397 (440)
                      . +...|..|++-+   ..   ..+.|..+++|-.+
T Consensus       272 ~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  272 FLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             EEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence            1 234466666642   11   22457788887654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.42  E-value=0.035  Score=58.91  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +-..|++...  ....+|..+.  ++|+.|.+. ...+...|  ...++|++|+|. ..+. .  +..   ..+.|+.|.
T Consensus       202 ~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~-~N~Lt~LP--~lp~~Lk~LdLs~N~Lt-s--LP~---lp~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGES--GLTTLPDCLP--AHITTLVIP-DNNLTSLP--ALPPELRTLEVSGNQLT-S--LPV---LPPGLLELS  268 (788)
T ss_pred             CCcEEEcCCC--CCCcCCcchh--cCCCEEEcc-CCcCCCCC--CCCCCCcEEEecCCccC-c--ccC---cccccceee
Confidence            4444544322  2345676554  368888888 34444433  124778888888 7665 2  111   236777777


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccc
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDL  267 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~  267 (440)
                      +.++....+     .-..++|+.|.+. ++   .+    ..+....|+|+.|.++++.
T Consensus       269 Ls~N~L~~L-----p~lp~~L~~L~Ls-~N---~L----t~LP~~p~~L~~LdLS~N~  313 (788)
T PRK15387        269 IFSNPLTHL-----PALPSGLCKLWIF-GN---QL----TSLPVLPPGLQELSVSDNQ  313 (788)
T ss_pred             ccCCchhhh-----hhchhhcCEEECc-CC---cc----ccccccccccceeECCCCc
Confidence            776532221     1122456666666 44   22    2222234567777776553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.41  E-value=0.0028  Score=59.08  Aligned_cols=184  Identities=13%  Similarity=0.088  Sum_probs=96.0

Q ss_pred             hhhhhccCCCcceEEEeeeeC-CCCC--CCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE
Q 041388          195 TENLFCSCPSLEELSVTCELH-DDTP--PPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF  271 (440)
Q Consensus       195 l~~lls~cp~Le~L~L~~c~~-~~~~--~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~  271 (440)
                      +...+-+||.|+.|+|++... +...  ...+--++.+|++|.+. +|   ++.......  -+-.|..|.+.      -
T Consensus        84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~-N~---Glg~~ag~~--l~~al~~l~~~------k  151 (382)
T KOG1909|consen   84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN-NC---GLGPEAGGR--LGRALFELAVN------K  151 (382)
T ss_pred             HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh-cC---CCChhHHHH--HHHHHHHHHHH------h
Confidence            455566899999999998631 1110  01122246789999998 88   332111000  00112222211      1


Q ss_pred             EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccC
Q 041388          272 VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSC  351 (440)
Q Consensus       272 ~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~  351 (440)
                      ...+.|.|+.+...-.....  .........++..+.++.+.+..+++.                 ......+..-+..|
T Consensus       152 k~~~~~~Lrv~i~~rNrlen--~ga~~~A~~~~~~~~leevr~~qN~I~-----------------~eG~~al~eal~~~  212 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLEN--GGATALAEAFQSHPTLEEVRLSQNGIR-----------------PEGVTALAEALEHC  212 (382)
T ss_pred             ccCCCcceEEEEeecccccc--ccHHHHHHHHHhccccceEEEeccccc-----------------CchhHHHHHHHHhC
Confidence            12344555544433222211  111011456677788999988776553                 22334566666777


Q ss_pred             CCccccc-cccC----C---CCCccccccceeEEEEEeee-cCcchHHHHHHHHhhccccceEEEEe
Q 041388          352 PAQEQFG-WLES----D---FDVPHCLVHTVKNIEIKGVQ-GDEDERPLLKYLLQFAAAMEKMLMWA  409 (440)
Q Consensus       352 p~L~~L~-~~~~----~---~~~~~c~~~~L~~v~i~~~~-~~~~~~~~~~~ll~~a~~L~~m~i~~  409 (440)
                      |+|+.|. +-+.    +   ....-|...||+++.+..|- -.....++++.+-+.+|.|+.+.+-+
T Consensus       213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g  279 (382)
T KOG1909|consen  213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG  279 (382)
T ss_pred             CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence            7777776 2110    1   11123445567777776554 34455677777777777777776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.39  E-value=0.00061  Score=67.97  Aligned_cols=194  Identities=16%  Similarity=0.134  Sum_probs=91.1

Q ss_pred             eecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCc
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPN  222 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~  222 (440)
                      .-+|..+|....|+.|+|+ .-.+...| ....-.++-.|+|+ ..+.  ..=..++-+..-|-.|+|++.+.+.++ ..
T Consensus        93 sGiP~diF~l~dLt~lDLS-hNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~NrLe~LP-PQ  168 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLS-HNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNRLEMLP-PQ  168 (1255)
T ss_pred             CCCCchhcccccceeeecc-hhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccchhhhcC-HH
Confidence            4567778888888888888 43444433 34445677778887 5553  222333444455556666664322221 00


Q ss_pred             EEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccc----cEEeeCCCCeeEEEEEEeecccccCCchh
Q 041388          223 LIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLG----SFVMHDLHSLKIVKLDIMHAEWAQVDPYR  298 (440)
Q Consensus       223 l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~  298 (440)
                      + -.-..|++|.++ ++.-..+ + ..+ .-+..+|+.|++++..-.    ...+.++.+|.+++++.....    ..  
T Consensus       169 ~-RRL~~LqtL~Ls-~NPL~hf-Q-LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----~v--  237 (1255)
T KOG0444|consen  169 I-RRLSMLQTLKLS-NNPLNHF-Q-LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----IV--  237 (1255)
T ss_pred             H-HHHhhhhhhhcC-CChhhHH-H-Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----cc--
Confidence            0 012346666666 4310000 0 000 112334555666554311    012233445555444332211    00  


Q ss_pred             hhhhhcccccccEEEEeccceeEee----ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388          299 AIQLLAGINSCKYLYLSAGIMSSVE----LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       299 ~~~~l~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                       -+.+-.+++++.|.|+++.+.-+.    ...+|..|+ .-.    -...++.-+-..|.|++|.
T Consensus       238 -Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN----QLt~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  238 -PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN----QLTVLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             -hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc----hhccchHHHhhhHHHHHHH
Confidence             233455667777777777666554    444555444 211    1222333334455566665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.05  E-value=0.025  Score=60.08  Aligned_cols=72  Identities=13%  Similarity=0.124  Sum_probs=36.3

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +++.|++...  ....+|..++  ++|+.|+|. +..+...| ..-.++|+.|.|. +.+. .  +..-+  ...|+.|+
T Consensus       200 ~L~~L~Ls~N--~LtsLP~~l~--~nL~~L~Ls-~N~LtsLP-~~l~~~L~~L~Ls~N~L~-~--LP~~l--~s~L~~L~  268 (754)
T PRK15370        200 QITTLILDNN--ELKSLPENLQ--GNIKTLYAN-SNQLTSIP-ATLPDTIQEMELSINRIT-E--LPERL--PSALQSLD  268 (754)
T ss_pred             CCcEEEecCC--CCCcCChhhc--cCCCEEECC-CCccccCC-hhhhccccEEECcCCccC-c--CChhH--hCCCCEEE
Confidence            5666666432  2235665443  467777777 33444333 1223457777776 5544 1  11111  23566666


Q ss_pred             Eeee
Q 041388          210 VTCE  213 (440)
Q Consensus       210 L~~c  213 (440)
                      +.++
T Consensus       269 Ls~N  272 (754)
T PRK15370        269 LFHN  272 (754)
T ss_pred             CcCC
Confidence            6554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.94  E-value=0.0017  Score=54.47  Aligned_cols=67  Identities=28%  Similarity=0.359  Sum_probs=46.0

Q ss_pred             eeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          144 RVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ....|+.+....+|+.|.++++..-..|+...++|.|+.|++. .++.   .+..-+.++|.||.|+|.+.
T Consensus        45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---cCccccCCCchhhhhhcccc
Confidence            4556777777888888888855544555556678888888888 5543   22333557888888888774

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.86  E-value=0.014  Score=53.40  Aligned_cols=232  Identities=15%  Similarity=0.140  Sum_probs=118.8

Q ss_pred             eecCccccccccccEEEecCCccc---------cCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSI---------QVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l---------~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +.+-..+--|..|+.|..++ ..-         ...+ ....|.+|+++.++ +.   .+.+..+...=|.|+++++++.
T Consensus       172 ~d~~hildf~~~l~~l~vs~-~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s  247 (490)
T KOG1259|consen  172 YDFSHVLDFCTQLVALVVTP-VKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNT  247 (490)
T ss_pred             cchHHHHHhhhheeEEEecC-CCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecc
Confidence            33333333366777777763 110         0011 13357778888777 54   3445566666788888888776


Q ss_pred             eCCCC--------------C-----CCcEEec--c-cccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE
Q 041388          214 LHDDT--------------P-----PPNLIIS--S-ATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF  271 (440)
Q Consensus       214 ~~~~~--------------~-----~~~l~i~--~-~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~  271 (440)
                      .....              .     .+.+...  . ..|+.|+++ .+   .+.+-++++. -+|+++.|.++-+....+
T Consensus       248 ~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS-~N---~I~~iDESvK-L~Pkir~L~lS~N~i~~v  322 (490)
T KOG1259|consen  248 TIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS-GN---LITQIDESVK-LAPKLRRLILSQNRIRTV  322 (490)
T ss_pred             cccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc-cc---chhhhhhhhh-hccceeEEeccccceeee
Confidence            21100              0     0111111  1 245555555 33   1211111211 168888888875433221


Q ss_pred             -EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-cccccch-hHHHHH
Q 041388          272 -VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTAN-RAKKLT  345 (440)
Q Consensus       272 -~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~-~~~~l~  345 (440)
                       .+..+++|+.++++.....    ..   .++-..+.|++.|.+..+.++.++   .+-.|..|+ .-.  +. ..+.+.
T Consensus       323 ~nLa~L~~L~~LDLS~N~Ls----~~---~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N--~Ie~ldeV~  393 (490)
T KOG1259|consen  323 QNLAELPQLQLLDLSGNLLA----EC---VGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSN--QIEELDEVN  393 (490)
T ss_pred             hhhhhcccceEeecccchhH----hh---hhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccccc--chhhHHHhc
Confidence             2455677777776543321    11   344456778888888888888776   344444444 222  22 222332


Q ss_pred             HHhccCCCccccc-cccCCCC-------CccccccceeEEEEEeeecCcchHHHHHHH
Q 041388          346 ELGKSCPAQEQFG-WLESDFD-------VPHCLVHTVKNIEIKGVQGDEDERPLLKYL  395 (440)
Q Consensus       346 ~lL~~~p~L~~L~-~~~~~~~-------~~~c~~~~L~~v~i~~~~~~~~~~~~~~~l  395 (440)
                       -+-+.|+||+|. ..++-..       +..-+-..-.+|.+.+-.+...|+..+..+
T Consensus       394 -~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~~~ELDTV~Vl  450 (490)
T KOG1259|consen  394 -HIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGNQQELDTVLVL  450 (490)
T ss_pred             -ccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCCcchhhhhHHHHH
Confidence             345689999987 3211011       111122334466677777777777766543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.75  E-value=0.0022  Score=66.92  Aligned_cols=57  Identities=16%  Similarity=0.152  Sum_probs=39.0

Q ss_pred             hhhhcccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc
Q 041388          300 IQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       300 ~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ...+.++.+||.|.|+.+.+..++  .+.+|..|+  ..+  +.....+..=...|+.|++|.
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS--GNkL~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS--GNKLTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc--cchhhhhhHHHHhhhhhHHHh
Confidence            456778888888888888887766  566777666  334  334445555555677777777

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.43  E-value=0.0034  Score=65.60  Aligned_cols=66  Identities=17%  Similarity=0.254  Sum_probs=42.7

Q ss_pred             HHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeC
Q 041388          120 FYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENP  190 (440)
Q Consensus       120 ~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~  190 (440)
                      +..|+..++  +++.+.....  ....+|..++...+|++|... ...+.. ++...++.+|++|.|. ..+.
T Consensus       256 lp~wi~~~~--nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~-~nel~yip~~le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  256 LPEWIGACA--NLEALNANHN--RLVALPLRISRITSLVSLSAA-YNELEYIPPFLEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             chHHHHhcc--cceEecccch--hHHhhHHHHhhhhhHHHHHhh-hhhhhhCCCcccccceeeeeeehhcccc
Confidence            447777665  6666666432  235677777777777777777 444443 3445568889999998 6665

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.33  E-value=0.013  Score=54.14  Aligned_cols=37  Identities=38%  Similarity=0.686  Sum_probs=34.9

Q ss_pred             CccCCCCC----hHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388           24 ADRISSLP----DSVLCHILSYIPTKHVVATSVIAKRWKNV   60 (440)
Q Consensus        24 ~D~is~LP----d~lL~~Ils~L~~~d~~rts~lsrrWr~l   60 (440)
                      .|.|..||    |+|-.+|||+|+..++..+-.+||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            48899999    99999999999999999999999999963

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=93.95  E-value=0.12  Score=54.84  Aligned_cols=51  Identities=14%  Similarity=0.080  Sum_probs=28.0

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEe
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LEN  189 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~  189 (440)
                      +++.|.+...  ....+|.   ..++|++|+|++ ..+...|.  ..++|+.|+|. ..+
T Consensus       223 ~L~~L~L~~N--~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~--lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        223 HITTLVIPDN--NLTSLPA---LPPELRTLEVSG-NQLTSLPV--LPPGLLELSIFSNPL  274 (788)
T ss_pred             CCCEEEccCC--cCCCCCC---CCCCCcEEEecC-CccCcccC--cccccceeeccCCch
Confidence            6777766432  2234553   246788888884 34443331  23567777666 543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.54  E-value=0.01  Score=53.23  Aligned_cols=108  Identities=17%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe--ccccc
Q 041388          154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII--SSATL  230 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i--~~~~L  230 (440)
                      ...|..|++. ++.+........+|+||.|.++ ..+.....+.-++..||+|++|.+.+.....+  ..+.-  .-++|
T Consensus        42 ~~~le~ls~~-n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--stl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVI-NVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--STLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhh-ccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--cccchhhhhcch
Confidence            4566667776 5555554445567899999999 75443567788888899999999988533212  22221  12567


Q ss_pred             ceeEEEeecccccccccccEEEEecCCceEEEEec
Q 041388          231 KTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYS  265 (440)
Q Consensus       231 ~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~  265 (440)
                      .+|.+. +|..-+...-.+.+-.-.|+|.+|...+
T Consensus       119 ~~Ldl~-n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLF-NCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcc-cCCccccccHHHHHHHHhhhhccccccc
Confidence            888887 7722111000112222357777776654

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.41  E-value=0.068  Score=51.41  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             CCCCChHHHHHHhcCCC-chhhhhhhccccchHHHhcc
Q 041388           27 ISSLPDSVLCHILSYIP-TKHVVATSVIAKRWKNVWTA   63 (440)
Q Consensus        27 is~LPd~lL~~Ils~L~-~~d~~rts~lsrrWr~lw~~   63 (440)
                      -++||+|+|..|..+|+ .-|.+|.+.||+.||.....
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            35799999999999998 78999999999999987554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.25  E-value=0.19  Score=45.62  Aligned_cols=215  Identities=12%  Similarity=-0.006  Sum_probs=106.5

Q ss_pred             eeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEcc----C-ceeecCccccccccccEEEecCCccccCCCCccccc
Q 041388          104 IGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQ----Q-SRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFP  178 (440)
Q Consensus       104 v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~----~-~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~  178 (440)
                      +..+.++.  ..-......|+...++ +++.|.+.+-.    + ...++|..+               .+-.+ ....||
T Consensus        32 ~~evdLSG--NtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L---------------~~Ll~-aLlkcp   92 (388)
T COG5238          32 LVEVDLSG--NTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNL---------------VMLLK-ALLKCP   92 (388)
T ss_pred             eeEEeccC--CcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHH---------------HHHHH-HHhcCC
Confidence            55555553  4446677899988877 46666554311    1 111222210               00000 123445


Q ss_pred             ccceEEEE-EEeC--CCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEec
Q 041388          179 CVKILSVR-LENP--NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITA  255 (440)
Q Consensus       179 ~L~~L~L~-~~~~--~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~  255 (440)
                      +|++.+|+ ..|.  ....+..++++-..|+.|.+.+|.....  ..=+| ...|.+|..             ..-.-+.
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~--aG~ri-gkal~~la~-------------nKKaa~k  156 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI--AGGRI-GKALFHLAY-------------NKKAADK  156 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc--chhHH-HHHHHHHHH-------------HhhhccC
Confidence            55555555 3332  2456788889999999999999832111  00011 111222211             1223457


Q ss_pred             CCceEEEEeccccccE-------EeeCCCCeeEEEEEEeecccccCCchhh--hhhhcccccccEEEEeccceeEee---
Q 041388          256 PKLESLEIYSDLLGSF-------VMHDLHSLKIVKLDIMHAEWAQVDPYRA--IQLLAGINSCKYLYLSAGIMSSVE---  323 (440)
Q Consensus       256 p~L~~L~~~~~~~~~~-------~~~~~~~L~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~l~~L~l~~~~~~~~~---  323 (440)
                      |.|+++.+..+.....       .+..--.|..+.+.......  .. ..+  ..-++.+.+++.|+|..+++....   
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp--eg-v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP--EG-VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc--ch-hHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            7788777744332211       11122356666664433321  10 011  233467889999999888665322   


Q ss_pred             ------ecccccccc-cccccchhHHHHHHHhcc-----CCCccccc
Q 041388          324 ------LHRNGGRTD-RMASTANRAKKLTELGKS-----CPAQEQFG  358 (440)
Q Consensus       324 ------~f~~L~~L~-~~~~~~~~~~~l~~lL~~-----~p~L~~L~  358 (440)
                            .+++|+.|. .-|  -....+...+++.     .|+|..|.
T Consensus       234 La~al~~W~~lrEL~lnDC--lls~~G~~~v~~~f~e~~~p~l~~L~  278 (388)
T COG5238         234 LADALCEWNLLRELRLNDC--LLSNEGVKSVLRRFNEKFVPNLMPLP  278 (388)
T ss_pred             HHHHhcccchhhhccccch--hhccccHHHHHHHhhhhcCCCccccc
Confidence                  677788777 322  1122223333333     58888887

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.96  E-value=0.072  Score=49.09  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCccCCCCChHHHHHHhc-----CCCchhhhhhhccccchHH
Q 041388           23 NADRISSLPDSVLCHILS-----YIPTKHVVATSVIAKRWKN   59 (440)
Q Consensus        23 ~~D~is~LPd~lL~~Ils-----~L~~~d~~rts~lsrrWr~   59 (440)
                      +.+.|+.||||||..||.     .++.+++.++|+|||.|+.
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            346688999999999986     4568999999999999985

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.61  E-value=0.051  Score=54.86  Aligned_cols=105  Identities=20%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             CcEEEEEEEc-c--C-ceeecCccccccccccEEEecCCccccCCC---CcccccccceEEEE-EE-eCCCcchhhhhcc
Q 041388          131 EVGEIQLYLG-Q--Q-SRVELPEAIYSAACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LE-NPNKSVTENLFCS  201 (440)
Q Consensus       131 ~l~~L~l~~~-~--~-~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~  201 (440)
                      .++++++..+ .  . .....+.....|++|++|++.++..+.+..   .+..+++|++|++. +. ++ +.++..+...
T Consensus       215 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt-~~gl~~i~~~  293 (482)
T KOG1947|consen  215 NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT-DEGLVSIAER  293 (482)
T ss_pred             hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc-hhHHHHHHHh
Confidence            7888887541 1  1 111122233348999999999544455533   12348999999988 76 66 8999999999


Q ss_pred             CCCcceEEEeeeeCCCCC-CCcEEecccccceeEEE
Q 041388          202 CPSLEELSVTCELHDDTP-PPNLIISSATLKTCKLI  236 (440)
Q Consensus       202 cp~Le~L~L~~c~~~~~~-~~~l~i~~~~L~~L~i~  236 (440)
                      ||.|++|+|.+|....-. ...+...++.|+.|.+.
T Consensus       294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            999999999999642110 01222345667776665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.31  E-value=0.026  Score=51.26  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             ccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388          229 TLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN  307 (440)
Q Consensus       229 ~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~  307 (440)
                      +.++|+.+ +|   +++  +.++....|.|+.|.++-+...+. .+..|.+|+++++.-....    + ++...++++++
T Consensus        20 ~vkKLNcw-g~---~L~--DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~----s-ldEL~YLknlp   88 (388)
T KOG2123|consen   20 NVKKLNCW-GC---GLD--DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE----S-LDELEYLKNLP   88 (388)
T ss_pred             Hhhhhccc-CC---Ccc--HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc----c-HHHHHHHhcCc
Confidence            46778777 77   442  244555678888888876543321 2344444444444221110    0 00034444555


Q ss_pred             cccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccCCCccccc
Q 041388          308 SCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       308 ~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      +|+.|.|..+                -|+.......=..+|+..|||++|.
T Consensus        89 sLr~LWL~EN----------------PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDEN----------------PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccC----------------CcccccchhHHHHHHHHcccchhcc
Confidence            5555544221                1101222334456888999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=90.01  E-value=0.035  Score=52.83  Aligned_cols=50  Identities=16%  Similarity=0.104  Sum_probs=35.3

Q ss_pred             hhhhcccccccEEEEeccceeEee--ecccccccc-------cccccchhHHHHHHHhcc
Q 041388          300 IQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD-------RMASTANRAKKLTELGKS  350 (440)
Q Consensus       300 ~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~-------~~~~~~~~~~~l~~lL~~  350 (440)
                      ...++++++++.|.|.++-+..+.  .|..+..|.       -|+ ......|+..-++.
T Consensus       315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~-CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN-CNCRLAWLGEWLRK  373 (498)
T ss_pred             HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc-CccchHHHHHHHhh
Confidence            567789999999999999888776  566555544       233 34556677776665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=89.37  E-value=0.33  Score=51.22  Aligned_cols=124  Identities=15%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             CCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc--cccccchhHHHHHHHhcc
Q 041388          276 LHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD--RMASTANRAKKLTELGKS  350 (440)
Q Consensus       276 ~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~--~~~~~~~~~~~l~~lL~~  350 (440)
                      +|+|+.+.+....-.  ..++   .++.+++++|..|+|++..+..+.   .+.||+.|.  .+.  -.+...+..++. 
T Consensus       147 LPsL~sL~i~~~~~~--~~dF---~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe--~e~~~~l~~LF~-  218 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFD--NDDF---SQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLE--FESYQDLIDLFN-  218 (699)
T ss_pred             CcccceEEecCceec--chhH---HHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCC--CCchhhHHHHhc-
Confidence            455555555443321  1122   566778888888888887777666   455555444  111  112223333332 


Q ss_pred             CCCccccc-cccCC-------CCCccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEE
Q 041388          351 CPAQEQFG-WLESD-------FDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMW  408 (440)
Q Consensus       351 ~p~L~~L~-~~~~~-------~~~~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~  408 (440)
                      ..+|+.|. .....       ...-+|... |-++++-++.|+.-.-++++-+++.=++|+++...
T Consensus       219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  219 LKKLRVLDISRDKNNDDTKIIEQYLECGMV-LPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             ccCCCeeeccccccccchHHHHHHHHhccc-CccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            45555555 21111       112255422 55666666777777778888888888888888754

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.43  E-value=0.54  Score=46.02  Aligned_cols=56  Identities=13%  Similarity=0.023  Sum_probs=34.5

Q ss_pred             hccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE-EecCCceEEEEecc
Q 041388          199 FCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSD  266 (440)
Q Consensus       199 ls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~  266 (440)
                      +..|+.++.|.+.+|..     ..+..-.++|++|.+. +|..      ...+. .-.++|++|.++++
T Consensus        48 ~~~~~~l~~L~Is~c~L-----~sLP~LP~sLtsL~Ls-nc~n------LtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDI-----ESLPVLPNELTEITIE-NCNN------LTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCC-----cccCCCCCCCcEEEcc-CCCC------cccCCchhhhhhhheEccCc
Confidence            34578899999998843     3333223478889888 7721      11111 11358888888765

>PLN03150 hypothetical protein; Provisional

Probab=88.33  E-value=0.48  Score=49.74  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             cccEEEecCCcccc-C-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388          156 CLKVLTLDSDFSIQ-V-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT  232 (440)
Q Consensus       156 ~L~~L~L~~~~~l~-~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~  232 (440)
                      .++.|+|.+ ..+. . ++....+++|+.|+|. ..+.  ..+...+..++.|+.|+|.++...+..+..+ -..++|+.
T Consensus       419 ~v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRI  494 (623)
T ss_pred             EEEEEECCC-CCccccCCHHHhCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCE
Confidence            377788883 3332 2 3345578899999999 8776  3455567889999999999875422100111 13478999


Q ss_pred             eEEEeec
Q 041388          233 CKLIVRS  239 (440)
Q Consensus       233 L~i~~~~  239 (440)
                      |.+. ++
T Consensus       495 L~Ls-~N  500 (623)
T PLN03150        495 LNLN-GN  500 (623)
T ss_pred             EECc-CC
Confidence            9998 65

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=87.94  E-value=0.7  Score=40.26  Aligned_cols=58  Identities=24%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             cccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          154 AACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      .+.|..|.|++ -++.. .+ ....+|+|++|.|. ..+..-++++. +.+||.|++|++.+-
T Consensus        63 l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   63 LPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             ccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence            56777788873 33333 23 23356778888888 66652333333 457888888887764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=87.52  E-value=1.3  Score=30.49  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=37.2

Q ss_pred             CcEEEEEEEccCceeecCccccc-cccccEEEecCCccccC-CC-CcccccccceEEEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYS-AACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR  186 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~  186 (440)
                      +++.|++..+  ....+|...|. +++|++|+++ +..+.. ++ .+.++++|+.|++.
T Consensus         2 ~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~   57 (61)
T PF13855_consen    2 NLESLDLSNN--KLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLS   57 (61)
T ss_dssp             TESEEEETSS--TESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEET
T ss_pred             cCcEEECCCC--CCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCc
Confidence            4566666432  35677876665 9999999999 444433 32 46789999999986

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=87.43  E-value=0.3  Score=31.33  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=19.1

Q ss_pred             ccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          179 CVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       179 ~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      +|++|+|. ..+.   .+...++.||.|+.|++.++.
T Consensus         2 ~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQIT---DLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-S---SHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCc---ccCchHhCCCCCCEEEecCCC
Confidence            45666666 5544   244446677777777777753

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=86.39  E-value=0.067  Score=45.11  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=43.7

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeC
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENP  190 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~  190 (440)
                      +++.|.+.+  ....++|..+.+.++|+.|.++ --++.. |..+++||.|+.|+|. ..+.
T Consensus        57 nlevln~~n--nqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   57 NLEVLNLSN--NQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             hhhhhhccc--chhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhccccccc
Confidence            455555543  2357899999999999999999 555544 4468899999999999 7776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=85.62  E-value=0.16  Score=55.15  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=36.9

Q ss_pred             cccccEEEecCCcc-ccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          154 AACLKVLTLDSDFS-IQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       154 ~~~L~~L~L~~~~~-l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      |+.|++|-+.++.. +...+  .+.++|.|+.|+|+ +.--  ..+..-++..-+|+.|++.++.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~  606 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTG  606 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCC
Confidence            66777777764321 33322  25567788888887 4422  3455667777788888887753

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.88  E-value=0.67  Score=40.36  Aligned_cols=60  Identities=13%  Similarity=0.139  Sum_probs=38.1

Q ss_pred             cccceeEEEEEeee-cCcchHHHHHHHHhhccccceEEEEeecCCCh-hhHHHHHHHHhcccCcCCcceEEe
Q 041388          370 LVHTVKNIEIKGVQ-GDEDERPLLKYLLQFAAAMEKMLMWAKASVPK-ENRANLRESILQLPRASMKTTIEI  439 (440)
Q Consensus       370 ~~~~L~~v~i~~~~-~~~~~~~~~~~ll~~a~~L~~m~i~~~~~~~~-~~~~~~~~~l~~~~r~s~~~~i~~  439 (440)
                      +..||+.+++.|+. -++..++.+..    .++|+++.|+..+.... +..+.++++.      =++|+|++
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~L~~----lknLr~L~l~~l~~v~~~e~~~~~Le~a------LP~c~I~~  210 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLACLLK----LKNLRRLHLYDLPYVANLELVQRQLEEA------LPKCDIVG  210 (221)
T ss_pred             cccchheeeccCCCeechhHHHHHHH----hhhhHHHHhcCchhhhchHHHHHHHHHh------Ccccceec
Confidence            56778888887665 55666655543    47888888888776543 4433244443      36777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=84.56  E-value=0.42  Score=30.61  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=16.0

Q ss_pred             cccEEEecCCccccCCCC-cccccccceEEEE-EEeC
Q 041388          156 CLKVLTLDSDFSIQVPSS-GTCFPCVKILSVR-LENP  190 (440)
Q Consensus       156 ~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~L~-~~~~  190 (440)
                      +|++|+|. ...+...+. ...+++|+.|+++ ..+.
T Consensus         2 ~L~~L~l~-~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLS-NNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEET-SSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEcc-CCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            45555555 333333332 4455666666665 4443

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=83.98  E-value=0.37  Score=47.48  Aligned_cols=159  Identities=19%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             ccccccEEEecCCccccCCCCccccc--ccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388          153 SAACLKVLTLDSDFSIQVPSSGTCFP--CVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT  229 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~~~~~~~~--~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~  229 (440)
                      ..+.++.|.+. ...+...+....+.  +|+.|++. ..+. +  +..-+..+|.|+.|.+.++....+  .......+.
T Consensus       114 ~~~~l~~L~l~-~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~--l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~~~  187 (394)
T COG4886         114 ELTNLTSLDLD-NNNITDIPPLIGLLKSNLKELDLSDNKIE-S--LPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSN  187 (394)
T ss_pred             cccceeEEecC-CcccccCccccccchhhcccccccccchh-h--hhhhhhccccccccccCCchhhhh--hhhhhhhhh
Confidence            34678888888 44444433244443  89999999 6655 2  113467899999999999754333  222226688


Q ss_pred             cceeEEEeecccccccccccEEEE--ecCC-ceEEEEeccc-ccc-EEeeCCCCeeEEEEEEeecccccCCchhhhhhhc
Q 041388          230 LKTCKLIVRSEDMLFREVDYMLTI--TAPK-LESLEIYSDL-LGS-FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLA  304 (440)
Q Consensus       230 L~~L~i~~~~~~~~~~~~~~~l~~--~~p~-L~~L~~~~~~-~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~  304 (440)
                      |+.|.++ ++   .+    ..+..  ..++ |++|.+.+.. ... ..+.+...+..+.+.....    ...   ...+.
T Consensus       188 L~~L~ls-~N---~i----~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~---~~~~~  252 (394)
T COG4886         188 LNNLDLS-GN---KI----SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL----EDL---PESIG  252 (394)
T ss_pred             hhheecc-CC---cc----ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee----eec---cchhc
Confidence            8999888 65   23    22222  2444 8888887662 111 1233333333333111110    000   24556


Q ss_pred             ccccccEEEEeccceeEee---ecccccccc
Q 041388          305 GINSCKYLYLSAGIMSSVE---LHRNGGRTD  332 (440)
Q Consensus       305 ~~~~l~~L~l~~~~~~~~~---~f~~L~~L~  332 (440)
                      .+++++.|.++.+.+..+.   ...+|+.|.
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~  283 (394)
T COG4886         253 NLSNLETLDLSNNQISSISSLGSLTNLRELD  283 (394)
T ss_pred             cccccceeccccccccccccccccCccCEEe
Confidence            7777888888877776655   344444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.40  E-value=0.29  Score=45.12  Aligned_cols=166  Identities=14%  Similarity=0.087  Sum_probs=93.9

Q ss_pred             ccccccEEEecCCccccCCC-Cc-ccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee--CCCCCCCcEEecc
Q 041388          153 SAACLKVLTLDSDFSIQVPS-SG-TCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL--HDDTPPPNLIISS  227 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~~-~~-~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~--~~~~~~~~l~i~~  227 (440)
                      ..+.|+.|+|+ +-.+..+- .. ....+|++|.|. ..++ -......++.-|.+++|.+....  .-...+.+..--+
T Consensus        95 ~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s  172 (418)
T KOG2982|consen   95 QLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLS-WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS  172 (418)
T ss_pred             cCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCC-hhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence            46789999999 55554331 11 245588888888 7776 56678888899999999887641  1011112333345


Q ss_pred             cccceeEEEeecccccccccccEEEEecCCceEEEEecccccc---------EEeeCCCCeeEEEEEEeecccccCCchh
Q 041388          228 ATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---------FVMHDLHSLKIVKLDIMHAEWAQVDPYR  298 (440)
Q Consensus       228 ~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---------~~~~~~~~L~~~~i~~~~~~~~~~~~~~  298 (440)
                      +.+++|... .|....+. +...+.--.||+..+.+-.+....         +..-++-.|....|+-+..         
T Consensus       173 ~~v~tlh~~-~c~~~~w~-~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas---------  241 (418)
T KOG2982|consen  173 TEVLTLHQL-PCLEQLWL-NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS---------  241 (418)
T ss_pred             hhhhhhhcC-CcHHHHHH-HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH---------
Confidence            678888877 77322221 122334446777777765442211         1111122233333322222         


Q ss_pred             hhhhhcccccccEEEEeccceeE----------e-eecccccccc
Q 041388          299 AIQLLAGINSCKYLYLSAGIMSS----------V-ELHRNGGRTD  332 (440)
Q Consensus       299 ~~~~l~~~~~l~~L~l~~~~~~~----------~-~~f~~L~~L~  332 (440)
                       ..-+.+++.+..|.+..+.+-.          + ..+.+++.|+
T Consensus       242 -vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  242 -VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             -HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence             4557788888888887664421          1 1566777676

>PRK15386 type III secretion protein GogB; Provisional

Probab=82.31  E-value=2.3  Score=41.75  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=68.5

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      ++++.|++..+  ....+|.   --.+|++|.+++|..+...|... .++|+.|.+. +...     ..   --+.|+.|
T Consensus        52 ~~l~~L~Is~c--~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L-----~s---LP~sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDC--DIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEI-----SG---LPESVRSL  117 (426)
T ss_pred             cCCCEEEeCCC--CCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccc-----cc---cccccceE
Confidence            47788887654  2233441   12358888888666665544212 3578888888 6321     11   12467888


Q ss_pred             EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE-EecCCceEEEEeccccccEEeeCCCCeeEEEEEE
Q 041388          209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI  286 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~  286 (440)
                      .+....   .  ..+..-.++|+.|.+. ..   .... ...+. .--++|++|.+.++.....+-.-..+|+.+.++.
T Consensus       118 ~L~~n~---~--~~L~~LPssLk~L~I~-~~---n~~~-~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        118 EIKGSA---T--DSIKNVPNGLTSLSIN-SY---NPEN-QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI  186 (426)
T ss_pred             EeCCCC---C--cccccCcchHhheecc-cc---cccc-ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence            875421   1  2223233578888775 32   0100 00111 1125788888877543221111124677777644

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.17  E-value=0.62  Score=47.66  Aligned_cols=38  Identities=26%  Similarity=0.605  Sum_probs=35.7

Q ss_pred             CCccCCCCChHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388           23 NADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNV   60 (440)
Q Consensus        23 ~~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l   60 (440)
                      ..|.++.||-++..+|+++|+.++++..+.+|+.|+.+
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            46899999999999999999999999999999999864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=81.06  E-value=2.1  Score=44.63  Aligned_cols=54  Identities=19%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             ccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEE
Q 041388          177 FPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLI  236 (440)
Q Consensus       177 ~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~  236 (440)
                      +|.|+.|+|+ ..+. +.+   .+..||.|+.|+|.+.....+  ..+...+-.|..|.+.
T Consensus       186 l~ale~LnLshNk~~-~v~---~Lr~l~~LkhLDlsyN~L~~v--p~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFT-KVD---NLRRLPKLKHLDLSYNCLRHV--PQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             HHHhhhhccchhhhh-hhH---HHHhcccccccccccchhccc--cccchhhhhheeeeec
Confidence            4678888888 7776 332   456788888888877533233  3333333345555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 20 NRGNADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRL 73
                   SLPD +L  I S +    ++  S + KRW         L+ D+ L
Sbjct: 2  ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWY-------RLASDESL 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.73
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.61
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.39
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.3
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.3
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.1
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.1
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.02
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.99
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.99
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.99
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.97
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.94
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.91
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.9
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.88
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.8
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.78
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.56
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.5
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.47
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.35
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.33
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.26
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.25
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.23
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.16
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.03
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.81
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.18
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	94.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	92.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	92.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	92.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.84
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	91.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	87.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	85.18
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	81.41

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=7.1e-20  Score=188.79  Aligned_cols=36  Identities=22%  Similarity=0.480  Sum_probs=33.1

Q ss_pred             CCCChHHHHHHhcCC-CchhhhhhhccccchHHHhcc
Q 041388           28 SSLPDSVLCHILSYI-PTKHVVATSVIAKRWKNVWTA   63 (440)
Q Consensus        28 s~LPd~lL~~Ils~L-~~~d~~rts~lsrrWr~lw~~   63 (440)
                      ++||||++.+||+|| +.+|+++++.|||||++++..
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence            489999999999999 799999999999999998643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=3.1e-19  Score=184.06  Aligned_cols=350  Identities=18%  Similarity=0.135  Sum_probs=196.8

Q ss_pred             CccCCCCChHHHHHHhcCCC-chhhhhhhccccchHHHhc-cCCeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhcCCC
Q 041388           24 ADRISSLPDSVLCHILSYIP-TKHVVATSVIAKRWKNVWT-AVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNP  101 (440)
Q Consensus        24 ~D~is~LPd~lL~~Ils~L~-~~d~~rts~lsrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~  101 (440)
                      .|+++.||||||.+||+||| .+|+++++.|||||+++.. ....+.+....        ....       ...+.+.  
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~--------~~~~-------~~~~~~~--   65 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCY--------AVSP-------ATVIRRF--   65 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTT--------SSCH-------HHHHHHC--
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccc--------ccCH-------HHHHhhC--
Confidence            58999999999999999999 9999999999999998832 23345553322        1111       1223333  


Q ss_pred             CceeeEEEEeeCCC---------ChhhHHHHHHHHHc--CCcEEEEEEEccCceeecCcccc-ccccccEEEecCCcccc
Q 041388          102 AKIGKFSLYCSRPT---------NLARFYDWIATALM--REVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQ  169 (440)
Q Consensus       102 ~~v~~l~l~~~~~~---------~~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~  169 (440)
                      +.++++.++.....         +...+..|+.....  .++++|++..+.- ....+..+. .|++|++|+|.+|..+.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            35899988874321         12456778876654  3788888864321 112222333 47888888888443443


Q ss_pred             C--CC-CcccccccceEEEE-EEeCCC--cchhhhhccCCCcceEEEeeeeCCCCCCC---cEEecccccceeEEEeecc
Q 041388          170 V--PS-SGTCFPCVKILSVR-LENPNK--SVTENLFCSCPSLEELSVTCELHDDTPPP---NLIISSATLKTCKLIVRSE  240 (440)
Q Consensus       170 ~--~~-~~~~~~~L~~L~L~-~~~~~~--~~l~~lls~cp~Le~L~L~~c~~~~~~~~---~l~i~~~~L~~L~i~~~~~  240 (440)
                      .  .+ ....+++|++|+|. +.+.+.  ..+..+...||.|++|++.+|. ..+.+.   .+...+++|++|.+. +|.
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~-~~~  222 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN-RAV  222 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC-TTS
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC-CCC
Confidence            3  11 12367888888888 776621  2355556678888888888774 111001   111235788888887 661


Q ss_pred             cccccccccEEEEecCCceEEEEecccc-------c--cEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccE
Q 041388          241 DMLFREVDYMLTITAPKLESLEIYSDLL-------G--SFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKY  311 (440)
Q Consensus       241 ~~~~~~~~~~l~~~~p~L~~L~~~~~~~-------~--~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~  311 (440)
                      .  .. +...+...+|+|++|.+.++..       .  ...+.++++|+.+.  ..... .....   ..++..+++++.
T Consensus       223 ~--~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls--~~~~~-~~~~l---~~~~~~~~~L~~  293 (594)
T 2p1m_B          223 P--LE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--GFWDA-VPAYL---PAVYSVCSRLTT  293 (594)
T ss_dssp             C--HH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE--CCBTC-CGGGG---GGGHHHHTTCCE
T ss_pred             c--HH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc--CCccc-chhhH---HHHHHhhCCCCE
Confidence            1  11 1112222467788887543311       0  01245677777652  10000 00000   344457889999


Q ss_pred             EEEeccceeEee------ecccccccc-cccccchhHHHHHHHhccCCCccccc-ccc--------CC-CC-Ccc---cc
Q 041388          312 LYLSAGIMSSVE------LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLE--------SD-FD-VPH---CL  370 (440)
Q Consensus       312 L~l~~~~~~~~~------~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~--------~~-~~-~~~---c~  370 (440)
                      |.++...+....      .+++|++|. ..+   .....+..+...||+|++|. ..+        .. .. ...   ..
T Consensus       294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~---~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~  370 (594)
T 2p1m_B          294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY---IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG  370 (594)
T ss_dssp             EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG---GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred             EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc---cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence            999766533211      456666666 322   34556778888899999996 211        11 00 000   01


Q ss_pred             ccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEE
Q 041388          371 VHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMW  408 (440)
Q Consensus       371 ~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~  408 (440)
                      ..+|+.+.+. +....+  ..+..+.++++.|+.+.+.
T Consensus       371 ~~~L~~L~~~-~~~l~~--~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          371 CPKLESVLYF-CRQMTN--AALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             CTTCCEEEEE-ESCCCH--HHHHHHHHHCTTCCEEEEE
T ss_pred             chhHHHHHHh-cCCcCH--HHHHHHHhhCCCcceeEee
Confidence            3678888543 222222  3455666788999999998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=1.3e-16  Score=152.53  Aligned_cols=164  Identities=19%  Similarity=0.184  Sum_probs=90.3

Q ss_pred             ccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHhcc---CCeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhcCCC
Q 041388           25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTA---VPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNP  101 (440)
Q Consensus        25 D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~  101 (440)
                      ..+++||||++.+||++|+.+|+++++.|||+|+++...   +..+++....        ..     ...+...+.    
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~--------~~-----~~~~~~~~~----   69 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN--------LH-----PDVTGRLLS----   69 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB--------CC-----HHHHHHHHH----
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc--------CC-----HHHHHhhhh----
Confidence            458999999999999999999999999999999998632   3345443322        11     122222221    


Q ss_pred             CceeeEEEEeeCCCC-hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC--CCCccccc
Q 041388          102 AKIGKFSLYCSRPTN-LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV--PSSGTCFP  178 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~-~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~--~~~~~~~~  178 (440)
                      ..++.+.+....-.. ...      .....++++|++..+.-....+|..+..+++|++|+|.+ +.+..  +.....++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~~~  142 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG-LRLSDPIVNTLAKNS  142 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT-CBCCHHHHHHHTTCT
T ss_pred             ccceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC-cccCHHHHHHHhcCC
Confidence            134444443211110 000      001135666665322100111444445566777777763 33321  11233466


Q ss_pred             ccceEEEE-E-EeCCCcchhhhhccCCCcceEEEeee
Q 041388          179 CVKILSVR-L-ENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       179 ~L~~L~L~-~-~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +|++|+|. + .+. +..+..++..||.|++|++.+|
T Consensus       143 ~L~~L~L~~~~~l~-~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          143 NLVRLNLSGCSGFS-EFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TCSEEECTTCBSCC-HHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCEEECCCCCCCC-HHHHHHHHhcCCCCCEEcCCCC
Confidence            67777776 5 344 4455666666777777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.87  E-value=4.9e-09  Score=99.47  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             HHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCC
Q 041388          126 TALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCP  203 (440)
Q Consensus       126 ~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp  203 (440)
                      .....+++.|++....  ...+|..++.+++|++|+|.++ .+.. |.....+++|++|+|. ..+.   .+..-+..++
T Consensus        77 ~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~  150 (328)
T 4fcg_A           77 DATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLR---ALPASIASLN  150 (328)
T ss_dssp             HHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGCT
T ss_pred             cccccceeEEEccCCC--chhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccc---cCcHHHhcCc
Confidence            3334467777775432  2367777888888888888843 3333 3345678888888888 7665   2344577888


Q ss_pred             CcceEEEeeee
Q 041388          204 SLEELSVTCEL  214 (440)
Q Consensus       204 ~Le~L~L~~c~  214 (440)
                      .|+.|+|.+|.
T Consensus       151 ~L~~L~L~~n~  161 (328)
T 4fcg_A          151 RLRELSIRACP  161 (328)
T ss_dssp             TCCEEEEEEET
T ss_pred             CCCEEECCCCC
Confidence            88888888874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.80  E-value=3e-09  Score=101.58  Aligned_cols=58  Identities=10%  Similarity=0.035  Sum_probs=28.1

Q ss_pred             ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +..+++|++|+|. ...+...+....+++|++|+|. +.+. +.  .. +..++.|+.|.+.+|
T Consensus        84 ~~~l~~L~~L~L~-~n~i~~~~~~~~l~~L~~L~l~~n~i~-~~--~~-~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A           84 LSNLVKLTNLYIG-TNKITDISALQNLTNLRELYLNEDNIS-DI--SP-LANLTKMYSLNLGAN  142 (347)
T ss_dssp             GTTCTTCCEEECC-SSCCCCCGGGTTCTTCSEEECTTSCCC-CC--GG-GTTCTTCCEEECTTC
T ss_pred             hhcCCcCCEEEcc-CCcccCchHHcCCCcCCEEECcCCccc-Cc--hh-hccCCceeEEECCCC
Confidence            3345555555555 3333333334445555555555 4444 11  11 445555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.74  E-value=3.4e-09  Score=108.78  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=66.9

Q ss_pred             CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCc-eeecCccccccccccEEEecCCccccCCC------Cc
Q 041388          102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQS-RVELPEAIYSAACLKVLTLDSDFSIQVPS------SG  174 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~l~~~~------~~  174 (440)
                      +.++++.++... .....+......  -.++++|++..+... ...++..+..|++|++|+|. .+.+....      ..
T Consensus       105 ~~L~~L~L~~~~-~~~~~~~~l~~~--~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          105 TWLEEIRLKRMV-VTDDCLELIAKS--FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR-ESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TTCCEEEEESCB-CCHHHHHHHHHH--CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT-TCEEECCCGGGGGGSC
T ss_pred             CCCCeEEeeCcE-EcHHHHHHHHHh--CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc-CCccCCcchHHHHHHh
Confidence            368898888643 222222222111  248999999754321 11244444468999999999 44444321      12


Q ss_pred             ccccccceEEEE-EE--eCCCcchhhhhccCCCcceEEEeee
Q 041388          175 TCFPCVKILSVR-LE--NPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       175 ~~~~~L~~L~L~-~~--~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ..+++|++|+|. +.  +. +..+..++..||.|+.|.|.+|
T Consensus       181 ~~~~~L~~L~l~~~~~~~~-~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVS-FSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCC-HHHHHHHHHHCTTCCEEECCTT
T ss_pred             hcCCcCcEEEecccCCcCC-HHHHHHHHHhCCCCcEEecCCC
Confidence            356789999998 75  43 5667777788888998888876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.73  E-value=1.3e-09  Score=111.86  Aligned_cols=295  Identities=14%  Similarity=0.017  Sum_probs=177.4

Q ss_pred             HHHHhcCCCCceeeEEEEeeCC---------CChhhHHHHHHHHHc--CCcEEEEEEEccCceeecCccccc-ccc-ccE
Q 041388           93 HTVLLRTNPAKIGKFSLYCSRP---------TNLARFYDWIATALM--REVGEIQLYLGQQSRVELPEAIYS-AAC-LKV  159 (440)
Q Consensus        93 ~~~L~~~~~~~v~~l~l~~~~~---------~~~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~lp~~l~~-~~~-L~~  159 (440)
                      ..++.+.+  .++++.++....         ........|+.....  .++++|++..+.- ....+..+.. +++ |++
T Consensus        66 ~~~~~~~~--~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~L~~  142 (592)
T 3ogk_B           66 DRLSRRFP--NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV-SDLDLDRLAKARADDLET  142 (592)
T ss_dssp             HHHHHHCT--TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHHGGGCCE
T ss_pred             HHHHHhCC--CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEe-cHHHHHHHHHhccccCcE
Confidence            34444444  499999976332         124455678776653  4899999875421 1122233333 455 999


Q ss_pred             EEecCCccccCCC---CcccccccceEEEE-EEeCCCcc---hhhhhccCCCcceEEEeeeeCCCCCCCcE---Eecccc
Q 041388          160 LTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSV---TENLFCSCPSLEELSVTCELHDDTPPPNL---IISSAT  229 (440)
Q Consensus       160 L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~---l~~lls~cp~Le~L~L~~c~~~~~~~~~l---~i~~~~  229 (440)
                      |+|.++..+....   ...++++|++|+|. +.+. +.+   +..+...||.|+.|++.++.........+   ...+++
T Consensus       143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~  221 (592)
T 3ogk_B          143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS  221 (592)
T ss_dssp             EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE-CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred             EECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc-CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence            9998443232211   12367899999999 8876 333   66778889999999998764321100111   124588


Q ss_pred             cceeEEEeecccccccccccEEEEecCCceEEEEeccccc------cEEeeCCCCeeEEEEEEeecccccCCchhhhhhh
Q 041388          230 LKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLG------SFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLL  303 (440)
Q Consensus       230 L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~------~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l  303 (440)
                      |++|.+. +|   .+.. ........|+|++|.+.+....      ...+..+++|+.+.+.....    ...   ..++
T Consensus       222 L~~L~L~-~~---~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~l---~~~~  289 (592)
T 3ogk_B          222 LVSVKVG-DF---EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP----NEM---PILF  289 (592)
T ss_dssp             CCEEECS-SC---BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT----TTG---GGGG
T ss_pred             CcEEecc-Cc---cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch----hHH---HHHH
Confidence            9999998 76   2211 1222334688999998642211      12345677888776633211    111   4456


Q ss_pred             cccccccEEEEeccceeEe------eecccccccc-cccccchhHHHHHHHhccCCCccccc-cc----------cCC-C
Q 041388          304 AGINSCKYLYLSAGIMSSV------ELHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WL----------ESD-F  364 (440)
Q Consensus       304 ~~~~~l~~L~l~~~~~~~~------~~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~----------~~~-~  364 (440)
                      ..+++++.|.++...+...      ..+++|+.|+ . .  ......+..++..||+|++|. ..          |.. .
T Consensus       290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~  366 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-N--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS  366 (592)
T ss_dssp             GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-G--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred             hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-C--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence            7889999999987653221      1566777776 5 3  455677888899999999998 62          211 1


Q ss_pred             C--Ccc--ccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEe
Q 041388          365 D--VPH--CLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWA  409 (440)
Q Consensus       365 ~--~~~--c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~  409 (440)
                      .  ...  ....+|+.+.+. +....+  ..+..+.++++.|+.+.+..
T Consensus       367 ~~~~~~l~~~~~~L~~L~l~-~~~l~~--~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          367 QRGLIALAQGCQELEYMAVY-VSDITN--ESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEEEE-ESCCCH--HHHHHHHHHCCSCCEEEEEE
T ss_pred             HHHHHHHHhhCccCeEEEee-cCCccH--HHHHHHHhhCCCCcEEEEee
Confidence            0  111  113689999883 222222  44556667899999999974

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.72  E-value=5.5e-09  Score=70.17  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHhc
Q 041388           24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWT   62 (440)
Q Consensus        24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~   62 (440)
                      .+.++.||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999998653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.70  E-value=1.2e-08  Score=97.26  Aligned_cols=267  Identities=11%  Similarity=0.072  Sum_probs=143.7

Q ss_pred             CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388          102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK  181 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~  181 (440)
                      +.++.+.+....-.....      ...-.+++.|++..+.  ...+| .+..+++|++|+|. ...+...+....+++|+
T Consensus        66 ~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~--i~~~~-~~~~l~~L~~L~l~-~n~i~~~~~~~~l~~L~  135 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNK--ITDIS-ALQNLTNLRELYLN-EDNISDISPLANLTKMY  135 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC--CCCCG-GGTTCTTCSEEECT-TSCCCCCGGGTTCTTCC
T ss_pred             CCccEEEccCCccccchh------hhcCCcCCEEEccCCc--ccCch-HHcCCCcCCEEECc-CCcccCchhhccCCcee
Confidence            357777776543322111      1122478888775432  12233 45668888888888 44454444366778888


Q ss_pred             eEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceE
Q 041388          182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLES  260 (440)
Q Consensus       182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~  260 (440)
                      +|++. +....+  +.. +..++.|++|.+.+|.....  .. .-..++|+.|.+. +|   .+.. ... ....++|+.
T Consensus       136 ~L~l~~n~~~~~--~~~-~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~-~n---~l~~-~~~-~~~l~~L~~  203 (347)
T 4fmz_A          136 SLNLGANHNLSD--LSP-LSNMTGLNYLTVTESKVKDV--TP-IANLTDLYSLSLN-YN---QIED-ISP-LASLTSLHY  203 (347)
T ss_dssp             EEECTTCTTCCC--CGG-GTTCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECT-TS---CCCC-CGG-GGGCTTCCE
T ss_pred             EEECCCCCCccc--ccc-hhhCCCCcEEEecCCCcCCc--hh-hccCCCCCEEEcc-CC---cccc-ccc-ccCCCccce
Confidence            88888 643311  222 67788888888888754333  22 1134678888887 66   2211 111 123567777


Q ss_pred             EEEeccccccEE-eeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-ccc
Q 041388          261 LEIYSDLLGSFV-MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMA  335 (440)
Q Consensus       261 L~~~~~~~~~~~-~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~  335 (440)
                      |.++++...... +..+++|+.+++.......        ...+..+++++.|.++.+.+..+.   .+++|+.|. ..+
T Consensus       204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          204 FTAYVNQITDITPVANMTRLNSLKIGNNKITD--------LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--------CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             eecccCCCCCCchhhcCCcCCEEEccCCccCC--------CcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence            777765433221 5567777777775543321        112566777788777766555444   344445444 222


Q ss_pred             ccchhHHHHHHHhccCCCccccc-cccCC-CCCcc--ccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEe
Q 041388          336 STANRAKKLTELGKSCPAQEQFG-WLESD-FDVPH--CLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWA  409 (440)
Q Consensus       336 ~~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~~~~--c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~  409 (440)
                        ...  .+ ..+..+|+|+.|. ..+.- ...+.  ....+|+.+.+.+..-..- ..     +...+.|+.+.+..
T Consensus       276 --~l~--~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~-----~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          276 --QIS--DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI-RP-----LASLSKMDSADFAN  342 (347)
T ss_dssp             --CCC--CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC-GG-----GGGCTTCSEESSSC
T ss_pred             --ccC--CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc-cC-----hhhhhccceeehhh
Confidence              111  11 2356677777777 42221 11111  1245677777765432111 11     45567777766543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.63  E-value=4.5e-08  Score=97.48  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=57.7

Q ss_pred             CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388          102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK  181 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~  181 (440)
                      ..++.+.+....-.....      ...-.++++|++..+.  ...++. +..+++|++|+|. ...+...+....+++|+
T Consensus        68 ~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~-~n~l~~~~~~~~l~~L~  137 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQ--IADITP-LANLTNLTGLTLF-NNQITDIDPLKNLTNLN  137 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC--CCCCGG-GTTCTTCCEEECC-SSCCCCCGGGTTCTTCS
T ss_pred             cCCCEEECCCCccCCchh------hhccccCCEEECCCCc--cccChh-hcCCCCCCEEECC-CCCCCCChHHcCCCCCC
Confidence            357777776544322111      1122478888775432  233444 6668889999998 44554444366788899


Q ss_pred             eEEEE-EEeCCCcchhhhhccCCCcceEEEee
Q 041388          182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTC  212 (440)
Q Consensus       182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~  212 (440)
                      +|+|. +.+.+-.    -+..++.|+.|.+.+
T Consensus       138 ~L~l~~n~l~~~~----~~~~l~~L~~L~l~~  165 (466)
T 1o6v_A          138 RLELSSNTISDIS----ALSGLTSLQQLSFGN  165 (466)
T ss_dssp             EEEEEEEEECCCG----GGTTCTTCSEEEEEE
T ss_pred             EEECCCCccCCCh----hhccCCcccEeecCC
Confidence            99999 8877221    245566666666644

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.62  E-value=4.2e-08  Score=95.26  Aligned_cols=135  Identities=13%  Similarity=0.014  Sum_probs=63.7

Q ss_pred             CCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecc---cccc
Q 041388          256 PKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHR---NGGR  330 (440)
Q Consensus       256 p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~---~L~~  330 (440)
                      ++|++|.++++..........++|+.+++.......        ...+..+++++.|.++.+.+....  .|.   +|+.
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCcc--------cHHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence            456666665554444433344556655554433211        234566777777777776665543  333   3333


Q ss_pred             cc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCccc--cccceeEEEEEeeecCcchHHHHHHHHhhccccceEE
Q 041388          331 TD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPHC--LVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKML  406 (440)
Q Consensus       331 L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c--~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~  406 (440)
                      |. ...    ....+......+|+|+.|. ..+.-...+..  ...+|+.+.+.+-.-..-  .     +...+.|+.+.
T Consensus       277 L~L~~n----~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~--~-----~~~~~~L~~L~  345 (390)
T 3o6n_A          277 LYISNN----RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K-----LSTHHTLKNLT  345 (390)
T ss_dssp             EECCSS----CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC--C-----CCTTCCCSEEE
T ss_pred             EECCCC----cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee--C-----chhhccCCEEE
Confidence            33 221    1111122234567777776 32211122211  235566666654321111  1     34556677776


Q ss_pred             EEe
Q 041388          407 MWA  409 (440)
Q Consensus       407 i~~  409 (440)
                      +..
T Consensus       346 l~~  348 (390)
T 3o6n_A          346 LSH  348 (390)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.61  E-value=5.2e-08  Score=96.98  Aligned_cols=245  Identities=11%  Similarity=0.091  Sum_probs=142.8

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .+++.|++..+.  ...+|. +..+++|++|+|. ...+...+....+++|++|+|. +.+. +.  .. +..++.|++|
T Consensus        68 ~~L~~L~Ls~n~--l~~~~~-~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~L~~n~l~-~~--~~-~~~l~~L~~L  139 (466)
T 1o6v_A           68 NNLTQINFSNNQ--LTDITP-LKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQIT-DI--DP-LKNLTNLNRL  139 (466)
T ss_dssp             TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCC-CC--GG-GTTCTTCSEE
T ss_pred             cCCCEEECCCCc--cCCchh-hhccccCCEEECC-CCccccChhhcCCCCCCEEECCCCCCC-CC--hH-HcCCCCCCEE
Confidence            477777775332  233444 5567888888888 4444433336677888888888 7665 22  12 6778888888


Q ss_pred             EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEe
Q 041388          209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIM  287 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~  287 (440)
                      ++.+|....+  .. --..++|+.|.+. ++.. ..    .. ....++|++|.++++..... .+..+++|+.+.+...
T Consensus       140 ~l~~n~l~~~--~~-~~~l~~L~~L~l~-~~~~-~~----~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          140 ELSSNTISDI--SA-LSGLTSLQQLSFG-NQVT-DL----KP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN  209 (466)
T ss_dssp             EEEEEEECCC--GG-GTTCTTCSEEEEE-ESCC-CC----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             ECCCCccCCC--hh-hccCCcccEeecC-Cccc-Cc----hh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC
Confidence            8888754333  21 1124677888776 4310 01    11 12357888888877654322 2456778888777554


Q ss_pred             ecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccC
Q 041388          288 HAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLES  362 (440)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~  362 (440)
                      ....        ...+..+++++.|.++.+.+..+.   .+++|+.|+ ..+ .-.....    +..+++|+.|. ..+.
T Consensus       210 ~l~~--------~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~  276 (466)
T 1o6v_A          210 QISD--------ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP----LSGLTKLTELKLGANQ  276 (466)
T ss_dssp             CCCC--------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG----GTTCTTCSEEECCSSC
T ss_pred             cccc--------cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh----hhcCCCCCEEECCCCc
Confidence            3321        112456788999998877666554   445555555 332 0111111    67788888888 4322


Q ss_pred             CCCC-ccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEeec
Q 041388          363 DFDV-PHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKA  411 (440)
Q Consensus       363 ~~~~-~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~  411 (440)
                      -... +-....+|+.+.+.+..-..-. .     +.+.+.|+.+.+....
T Consensus       277 l~~~~~~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          277 ISNISPLAGLTALTNLELNENQLEDIS-P-----ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCSCCG-G-----GGGCTTCSEEECCSSC
T ss_pred             cCccccccCCCccCeEEcCCCcccCch-h-----hcCCCCCCEEECcCCc
Confidence            1111 2334577888888754322111 1     5688999999997754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.56  E-value=5.8e-08  Score=99.82  Aligned_cols=75  Identities=13%  Similarity=0.056  Sum_probs=35.8

Q ss_pred             hcccccccEEEEeccceeEee----ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCccccccceeE
Q 041388          303 LAGINSCKYLYLSAGIMSSVE----LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPHCLVHTVKN  376 (440)
Q Consensus       303 l~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c~~~~L~~  376 (440)
                      +..+++++.|.|+.+.+..++    .+++|+.|+ ..+  ...  .+..-+..+|+|+.|. ..+.-...+.....+|+.
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~  349 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLL--HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN  349 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS--CCC--CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSE
T ss_pred             hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC--CCC--ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCE
Confidence            445666666666666555444    344555555 322  111  1222234456677666 322112223333456777


Q ss_pred             EEEEe
Q 041388          377 IEIKG  381 (440)
Q Consensus       377 v~i~~  381 (440)
                      +.+.+
T Consensus       350 L~l~~  354 (597)
T 3oja_B          350 LTLSH  354 (597)
T ss_dssp             EECCS
T ss_pred             EEeeC
Confidence            77754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.49  E-value=4.3e-07  Score=86.77  Aligned_cols=248  Identities=14%  Similarity=0.092  Sum_probs=148.8

Q ss_pred             CCcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          130 REVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      .++++|++...  ....+|. .+..+++|++|+|.++ .+.. ++ ....+++|++|+|. ..+. . .-...+..++.|
T Consensus        52 ~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~-~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS-N-LSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-S-CCHHHHTTCTTC
T ss_pred             ccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC-c-CCHhHhCCCccC
Confidence            36777777432  2334555 4556899999999944 4433 22 35678999999999 8776 2 233457789999


Q ss_pred             ceEEEeeeeCCCCCCCc--EEecccccceeEEEeecccccccccccEEE----EecCCceEEEEeccccccE---EeeCC
Q 041388          206 EELSVTCELHDDTPPPN--LIISSATLKTCKLIVRSEDMLFREVDYMLT----ITAPKLESLEIYSDLLGSF---VMHDL  276 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~--l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~----~~~p~L~~L~~~~~~~~~~---~~~~~  276 (440)
                      ++|++.++....+  ..  .--..++|+.|.+. +|..  +    ..+.    -..++|++|.++++.....   .+.++
T Consensus       127 ~~L~L~~n~l~~l--~~~~~~~~l~~L~~L~l~-~n~~--~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (353)
T 2z80_A          127 TFLNLLGNPYKTL--GETSLFSHLTKLQILRVG-NMDT--F----TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI  197 (353)
T ss_dssp             SEEECTTCCCSSS--CSSCSCTTCTTCCEEEEE-ESSS--C----CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             CEEECCCCCCccc--CchhhhccCCCCcEEECC-CCcc--c----cccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence            9999988754333  11  11235789999998 6611  1    1111    1357899999987654433   24567


Q ss_pred             CCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--------ecccccccc-cc-cccchhHHHHHH
Q 041388          277 HSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--------LHRNGGRTD-RM-ASTANRAKKLTE  346 (440)
Q Consensus       277 ~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--------~f~~L~~L~-~~-~~~~~~~~~l~~  346 (440)
                      ++|+.+++......    ...  ..+...+++++.|.++.+.+....        ....++.+. .. .-.......+..
T Consensus       198 ~~L~~L~l~~n~l~----~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          198 QNVSHLILHMKQHI----LLL--EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             SEEEEEEEECSCST----THH--HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             ccCCeecCCCCccc----cch--hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence            88888887654431    110  334556889999999887655332        233444444 11 101333445677


Q ss_pred             HhccCCCccccc-cccCCCCCcc---ccccceeEEEEEee--ecCcchHHHHHHHHh
Q 041388          347 LGKSCPAQEQFG-WLESDFDVPH---CLVHTVKNIEIKGV--QGDEDERPLLKYLLQ  397 (440)
Q Consensus       347 lL~~~p~L~~L~-~~~~~~~~~~---c~~~~L~~v~i~~~--~~~~~~~~~~~~ll~  397 (440)
                      .+..+++|+.|. ..+.=...|.   ....+|+.+.+.+-  .+....+..+...++
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~  328 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  328 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred             HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHH
Confidence            788999999998 4321122332   22467888888753  344434555444333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.47  E-value=2.3e-07  Score=87.82  Aligned_cols=194  Identities=16%  Similarity=0.114  Sum_probs=118.3

Q ss_pred             CceeeEEEEeeCCCC-hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccc
Q 041388          102 AKIGKFSLYCSRPTN-LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPC  179 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~-~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~  179 (440)
                      ..+..+.+....-.. ...+    ..  -.+++.|++....  ...+|..+..+++|++|+|.++ .+.. |.....+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l----~~--l~~L~~L~L~~n~--l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~  151 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQA----FR--LSHLQHMTIDAAG--LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNR  151 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCG----GG--GTTCSEEEEESSC--CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTT
T ss_pred             cceeEEEccCCCchhcChhh----hh--CCCCCEEECCCCC--ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcC
Confidence            468888888644332 2211    11  2489999997543  2378888888999999999944 4444 335668899


Q ss_pred             cceEEEE-EEeCCCc--ch-----hhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEE
Q 041388          180 VKILSVR-LENPNKS--VT-----ENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYML  251 (440)
Q Consensus       180 L~~L~L~-~~~~~~~--~l-----~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l  251 (440)
                      |++|+|. +.+.+.-  .+     ...+.+++.|+.|.|.++....+  ...--..++|+.|.+. +|   .+...... 
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~-~N---~l~~l~~~-  224 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIR-NS---PLSALGPA-  224 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEE-SS---CCCCCCGG-
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEcc-CC---CCCcCchh-
Confidence            9999999 7665211  11     11234699999999999854333  1111134789999998 77   23210111 


Q ss_pred             EEecCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEecc
Q 041388          252 TITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAG  317 (440)
Q Consensus       252 ~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~  317 (440)
                      .-..|+|++|.++++....   ..+.++++|+.+++..+.....  .    ...+..+++++.|.|+.+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~----p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT--L----PLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB--C----CTTGGGCTTCCEEECTTC
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh--c----chhhhcCCCCCEEeCCCC
Confidence            1136889999998754322   1245567777776654332110  0    122456677777777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.44  E-value=8.3e-08  Score=93.13  Aligned_cols=229  Identities=12%  Similarity=0.046  Sum_probs=102.2

Q ss_pred             cccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccc
Q 041388          152 YSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSA  228 (440)
Q Consensus       152 ~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~  228 (440)
                      ..+++|++|+|.+ ..+.. ++ ....+++|++|+|. ..+.  ..-..++..++.|++|.+.++......+.. --..+
T Consensus        90 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~  165 (390)
T 3o6n_A           90 AYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATT  165 (390)
T ss_dssp             TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCT
T ss_pred             cCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCC
Confidence            3456666666663 22222 22 23455666666666 5444  111233455566666666655321110000 01224


Q ss_pred             ccceeEEEeecccccccccccEEE-EecCCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388          229 TLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN  307 (440)
Q Consensus       229 ~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~  307 (440)
                      +|+.|.+. ++   .+.    .+. -..|+|+.|.++++....+  ...++|+.+++.......         -.....+
T Consensus       166 ~L~~L~l~-~n---~l~----~~~~~~l~~L~~L~l~~n~l~~~--~~~~~L~~L~l~~n~l~~---------~~~~~~~  226 (390)
T 3o6n_A          166 SLQNLQLS-SN---RLT----HVDLSLIPSLFHANVSYNLLSTL--AIPIAVEELDASHNSINV---------VRGPVNV  226 (390)
T ss_dssp             TCCEEECC-SS---CCS----BCCGGGCTTCSEEECCSSCCSEE--ECCSSCSEEECCSSCCCE---------EECCCCS
T ss_pred             CCCEEECC-CC---cCC----ccccccccccceeeccccccccc--CCCCcceEEECCCCeeee---------ccccccc
Confidence            56666665 44   111    001 1135566666555433221  223445544443322110         0012235


Q ss_pred             cccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc--ccccceeEEEEE
Q 041388          308 SCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH--CLVHTVKNIEIK  380 (440)
Q Consensus       308 ~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~--c~~~~L~~v~i~  380 (440)
                      +++.|.++.+.+....   .+++|+.|+ ...  ... ......+..+++|+.|. ..+.-...+.  ....+|+.+.+.
T Consensus       227 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--ELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             SCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred             cccEEECCCCCCcccHHHcCCCCccEEECCCC--cCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence            6777777766555444   344555554 222  110 01123455677777777 3221111111  234678888887


Q ss_pred             eeecCcchHHHHHHHHhhccccceEEEEeec
Q 041388          381 GVQGDEDERPLLKYLLQFAAAMEKMLMWAKA  411 (440)
Q Consensus       381 ~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~  411 (440)
                      +..-..-...     +...+.|+.+.+....
T Consensus       304 ~n~l~~~~~~-----~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          304 HNHLLHVERN-----QPQFDRLENLYLDHNS  329 (390)
T ss_dssp             SSCCCCCGGG-----HHHHTTCSEEECCSSC
T ss_pred             CCcceecCcc-----ccccCcCCEEECCCCc
Confidence            5432211111     2345789988886543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.41  E-value=5.4e-07  Score=91.80  Aligned_cols=121  Identities=13%  Similarity=0.097  Sum_probs=57.3

Q ss_pred             cCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE
Q 041388          147 LPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI  224 (440)
Q Consensus       147 lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~  224 (440)
                      .|..+..+++|++|++. ...+...+ ....+ +|++|++. +.+. .-..    ..++.|+.|.+.++.....  .. .
T Consensus       274 ~~~~~~~l~~L~~L~l~-~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~----~~l~~L~~L~l~~n~~~~~--~~-~  343 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLV-SVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT----LKLKSLKRLTFTSNKGGNA--FS-E  343 (570)
T ss_dssp             STTTTGGGTTCSEEEEE-SCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB----CBCSSCCEEEEESCBSCCB--CC-C
T ss_pred             chhhhcCcCcccEEEec-CccchhhhhhhccC-CccEEeeccCccc-ccCc----ccccccCEEeCcCCccccc--cc-c
Confidence            44445556677777776 33333322 23334 66666666 5554 1111    3566666666666543211  00 1


Q ss_pred             ecccccceeEEEeecccccccccccEEE------EecCCceEEEEeccccccE--EeeCCCCeeEEEEE
Q 041388          225 ISSATLKTCKLIVRSEDMLFREVDYMLT------ITAPKLESLEIYSDLLGSF--VMHDLHSLKIVKLD  285 (440)
Q Consensus       225 i~~~~L~~L~i~~~~~~~~~~~~~~~l~------~~~p~L~~L~~~~~~~~~~--~~~~~~~L~~~~i~  285 (440)
                      ...++|+.|++. +|   .+    ..+.      ...++|++|.++++.....  .+.++++|+.+++.
T Consensus       344 ~~~~~L~~L~l~-~n---~l----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~  404 (570)
T 2z63_A          344 VDLPSLEFLDLS-RN---GL----SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ  404 (570)
T ss_dssp             CBCTTCCEEECC-SS---CC----BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred             ccCCCCCEEeCc-CC---cc----CccccccccccccCccCEEECCCCccccccccccccCCCCEEEcc
Confidence            234566666665 44   11    1110      1245666666655432221  14455666655553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.40  E-value=1.3e-07  Score=94.23  Aligned_cols=80  Identities=9%  Similarity=0.061  Sum_probs=39.5

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      +++.|++.... .....|..+..+++|++|+|.++..... +.....+++|++|+|. ..+. . .....+..++.|+.|
T Consensus       105 ~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~-~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          105 NLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-S-IPTEALSHLHGLIVL  181 (477)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-S-CCHHHHTTCTTCCEE
T ss_pred             CCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-c-cChhHhcccCCCcEE
Confidence            55555553211 0112233344466666666663221111 1134456667777776 6554 1 223345566666666


Q ss_pred             EEeee
Q 041388          209 SVTCE  213 (440)
Q Consensus       209 ~L~~c  213 (440)
                      .|.++
T Consensus       182 ~l~~n  186 (477)
T 2id5_A          182 RLRHL  186 (477)
T ss_dssp             EEESC
T ss_pred             eCCCC
Confidence            66665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.39  E-value=7.2e-08  Score=90.48  Aligned_cols=139  Identities=14%  Similarity=0.082  Sum_probs=79.1

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      ++++|++..+.  ...+| .+..+++|++|+|. +..+...+....+++|+.|+|. ..+. +-  . -+..++.|+.|.
T Consensus        42 ~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~-~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~--~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           42 GITTLSAFGTG--VTTIE-GVQYLNNLIGLELK-DNQITDLAPLKNLTKITELELSGNPLK-NV--S-AIAGLQSIKTLD  113 (308)
T ss_dssp             TCCEEECTTSC--CCCCT-TGGGCTTCCEEECC-SSCCCCCGGGTTCCSCCEEECCSCCCS-CC--G-GGTTCTTCCEEE
T ss_pred             CcCEEEeeCCC--ccCch-hhhccCCCCEEEcc-CCcCCCChhHccCCCCCEEEccCCcCC-Cc--h-hhcCCCCCCEEE
Confidence            67777764321  23344 45567888888888 4445443336677888888888 7766 22  1 366788888888


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEE-eeCCCCeeEEEEEE
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV-MHDLHSLKIVKLDI  286 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~-~~~~~~L~~~~i~~  286 (440)
                      +.+|....+  .. --..++|+.|.+. +|   .+.. ... .-..++|++|.++++...... +.++++|+.+++..
T Consensus       114 l~~n~l~~~--~~-l~~l~~L~~L~l~-~n---~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          114 LTSTQITDV--TP-LAGLSNLQVLYLD-LN---QITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD  182 (308)
T ss_dssp             CTTSCCCCC--GG-GTTCTTCCEEECC-SS---CCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCCCCCc--hh-hcCCCCCCEEECC-CC---ccCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCC
Confidence            888754333  21 1123678888777 65   2211 111 113467777777665432211 34455555555433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.39  E-value=8.1e-08  Score=89.89  Aligned_cols=234  Identities=12%  Similarity=0.052  Sum_probs=124.4

Q ss_pred             eecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP  221 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~  221 (440)
                      ..+|..+.  ++|++|+|. ...+...+  ....+++|++|+|. ..+.........+..++.|++|+|.++....+  .
T Consensus        20 ~~ip~~~~--~~l~~L~L~-~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l--~   94 (306)
T 2z66_A           20 TSVPTGIP--SSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--S   94 (306)
T ss_dssp             SSCCSCCC--TTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE--E
T ss_pred             ccCCCCCC--CCCCEEECC-CCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC--h
Confidence            44555333  578888888 44444433  24567888888888 66552222233445678888888887632111  1


Q ss_pred             cEEecccccceeEEEeeccccccccccc-EEEEecCCceEEEEeccccccE---EeeCCCCeeEEEEEEeecccccCCch
Q 041388          222 NLIISSATLKTCKLIVRSEDMLFREVDY-MLTITAPKLESLEIYSDLLGSF---VMHDLHSLKIVKLDIMHAEWAQVDPY  297 (440)
Q Consensus       222 ~l~i~~~~L~~L~i~~~~~~~~~~~~~~-~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~  297 (440)
                      .-....++|+.|.+. ++   .+..... ......++|++|.++++.....   .+.++++|+.+++........  .. 
T Consensus        95 ~~~~~l~~L~~L~l~-~n---~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-  167 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQ-HS---NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FL-  167 (306)
T ss_dssp             EEEETCTTCCEEECT-TS---EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EE-
T ss_pred             hhcCCCCCCCEEECC-CC---cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cc-
Confidence            111234778888877 55   2211000 0112357788888876543221   245567787777644332100  00 


Q ss_pred             hhhhhhcccccccEEEEeccceeEee--ecc---cccccc-cccccchhHHHHHHHhccCCCccccc-cccCC-CCCc--
Q 041388          298 RAIQLLAGINSCKYLYLSAGIMSSVE--LHR---NGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESD-FDVP--  367 (440)
Q Consensus       298 ~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~---~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~~~--  367 (440)
                        ...+..+++++.|.++.+.+..+.  .|.   +|+.|+ ...  .... .....+..+++|+.|. ..+.- ...+  
T Consensus       168 --~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          168 --PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN--NFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             --CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             --hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC--ccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence              233567788999999888776663  344   444444 222  1100 0011256788899888 43211 1111  


Q ss_pred             -cccccceeEEEEEe--eecCcchHHHHHHH
Q 041388          368 -HCLVHTVKNIEIKG--VQGDEDERPLLKYL  395 (440)
Q Consensus       368 -~c~~~~L~~v~i~~--~~~~~~~~~~~~~l  395 (440)
                       .....+|+.+.+.+  +.+......+.+++
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             HHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence             11225789998874  44555444555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.36  E-value=3e-07  Score=90.97  Aligned_cols=81  Identities=20%  Similarity=0.118  Sum_probs=48.0

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccC--CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV--PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~--~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      ++++|++..+. -....|..+..+++|++|+|. ...+..  +.  ....+++|++|+|. ..+. ...-..++..++.|
T Consensus        80 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L  156 (455)
T 3v47_A           80 SLIILKLDYNQ-FLQLETGAFNGLANLEVLTLT-QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRF  156 (455)
T ss_dssp             TCCEEECTTCT-TCEECTTTTTTCTTCCEEECT-TSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTC
T ss_pred             cCCEEeCCCCc-cCccChhhccCcccCCEEeCC-CCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcc
Confidence            66777664321 112335555567788888887 434432  11  24567778888887 6665 33233446677888


Q ss_pred             ceEEEeeee
Q 041388          206 EELSVTCEL  214 (440)
Q Consensus       206 e~L~L~~c~  214 (440)
                      ++|++.++.
T Consensus       157 ~~L~L~~n~  165 (455)
T 3v47_A          157 HVLDLTFNK  165 (455)
T ss_dssp             CEEECTTCC
T ss_pred             cEEeCCCCc
Confidence            888887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.35  E-value=1.2e-08  Score=96.89  Aligned_cols=58  Identities=14%  Similarity=0.077  Sum_probs=27.1

Q ss_pred             ccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          155 ACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ++++.|++.++..-..++....+++|++|+|. +.+. +..+..++..||.|++|+|.+|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L~L~~~  128 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGL  128 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEEeCcCc
Confidence            44555555522211112223344555555555 5444 3334455555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.34  E-value=5.3e-09  Score=103.83  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=15.8

Q ss_pred             ccceEEEE-EEeCCCc---chhhhhccCCCcceEEEeee
Q 041388          179 CVKILSVR-LENPNKS---VTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       179 ~L~~L~L~-~~~~~~~---~l~~lls~cp~Le~L~L~~c  213 (440)
                      +|++|+|. +.+. +.   .+...+..|+.|++|+|.++
T Consensus        86 ~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~L~~L~Ls~n  123 (461)
T 1z7x_W           86 KIQKLSLQNCCLT-GAGCGVLSSTLRTLPTLQELHLSDN  123 (461)
T ss_dssp             CCCEEECTTSCCB-GGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             ceeEEEccCCCCC-HHHHHHHHHHHccCCceeEEECCCC
Confidence            35555555 4444 21   23333445555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.34  E-value=5.2e-07  Score=91.88  Aligned_cols=239  Identities=15%  Similarity=0.053  Sum_probs=117.4

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +++.|++..+.  ...+|..+..+ +|++|++. ...+...+ ...+++|+.|.+. ..+.....  .  ..+|.|++|+
T Consensus       283 ~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~-~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~--~--~~~~~L~~L~  353 (570)
T 2z63_A          283 NVSSFSLVSVT--IERVKDFSYNF-GWQHLELV-NCKFGQFP-TLKLKSLKRLTFTSNKGGNAFS--E--VDLPSLEFLD  353 (570)
T ss_dssp             TCSEEEEESCE--ECSCCBCCSCC-CCSEEEEE-SCBCSSCC-BCBCSSCCEEEEESCBSCCBCC--C--CBCTTCCEEE
T ss_pred             cccEEEecCcc--chhhhhhhccC-CccEEeec-cCcccccC-cccccccCEEeCcCCccccccc--c--ccCCCCCEEe
Confidence            45555553221  23466666666 77777777 44454444 3567777777777 65541111  1  5677777777


Q ss_pred             EeeeeCCCCCCCcEE------ecccccceeEEEeecccccccccccEEEEecCCceEEEEecccccc----EEeeCCCCe
Q 041388          210 VTCELHDDTPPPNLI------ISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS----FVMHDLHSL  279 (440)
Q Consensus       210 L~~c~~~~~~~~~l~------i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~----~~~~~~~~L  279 (440)
                      +.++..     ..+.      ...++|+.|.+. +|   .+.. ...-....++|++|.++++....    ..+.++++|
T Consensus       354 l~~n~l-----~~~~~~~~~~~~~~~L~~L~l~-~n---~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          354 LSRNGL-----SFKGCCSQSDFGTTSLKYLDLS-FN---GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CCSSCC-----BEEEEEEHHHHTCSCCCEEECC-SC---SEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             CcCCcc-----CccccccccccccCccCEEECC-CC---cccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            777532     2211      123677777776 55   2211 11112346777777776654322    124456677


Q ss_pred             eEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee--Eee-e---cccccccc-cccccchhHHHHHHHhccCC
Q 041388          280 KIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS--SVE-L---HRNGGRTD-RMASTANRAKKLTELGKSCP  352 (440)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~--~~~-~---f~~L~~L~-~~~~~~~~~~~l~~lL~~~p  352 (440)
                      +.+++.......   ..   ...+.++++++.|.++.+.+.  .++ .   +++|+.|+ ..+  ... ......+..+|
T Consensus       424 ~~L~l~~n~l~~---~~---~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n--~l~-~~~~~~~~~l~  494 (570)
T 2z63_A          424 IYLDISHTHTRV---AF---NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLE-QLSPTAFNSLS  494 (570)
T ss_dssp             CEEECTTSCCEE---CC---TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCC-EECTTTTTTCT
T ss_pred             CEEeCcCCcccc---cc---hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC--ccc-cCChhhhhccc
Confidence            766664432210   00   233456677777777666543  222 2   33444443 222  110 01122345567


Q ss_pred             Cccccc-cccCCCCC-cc--ccccceeEEEEEe--eecCcchHHHH-HHHHh
Q 041388          353 AQEQFG-WLESDFDV-PH--CLVHTVKNIEIKG--VQGDEDERPLL-KYLLQ  397 (440)
Q Consensus       353 ~L~~L~-~~~~~~~~-~~--c~~~~L~~v~i~~--~~~~~~~~~~~-~~ll~  397 (440)
                      +|+.|. ..+.-... +.  ....+|+.+.+.+  +.+......++ .++-+
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~  546 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  546 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence            777766 32211111 11  1235567776664  33444444555 44433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.33  E-value=3.5e-07  Score=85.95  Aligned_cols=66  Identities=11%  Similarity=0.231  Sum_probs=27.4

Q ss_pred             ecCccccccccccEEEecC-Cccc-cCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          146 ELPEAIYSAACLKVLTLDS-DFSI-QVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       146 ~lp~~l~~~~~L~~L~L~~-~~~l-~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      .+|..+..+++|++|+|.+ +... ..|.....+++|++|+|. ..+.  ..+...+..++.|++|+|.++
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE--EECCGGGGGCTTCCEEECCSS
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC--CcCCHHHhCCCCCCEEeCCCC
Confidence            3444444455555555542 1111 112223344555555555 4433  112223344455555555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.32  E-value=1.4e-07  Score=94.30  Aligned_cols=201  Identities=11%  Similarity=0.067  Sum_probs=106.4

Q ss_pred             cccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccc
Q 041388          154 AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATL  230 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L  230 (440)
                      +++|++|+|++ ..+...+  ....+++|++|+|. +.+.+...    +..++.|+.|+|.+|..     ..+. ..++|
T Consensus        33 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l-----~~l~-~~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYV-----QELL-VGPSI  101 (487)
T ss_dssp             GGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEE-----EEEE-ECTTC
T ss_pred             CCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcC-----CCCC-CCCCc
Confidence            34677777773 3333322  34456777777777 55541111    55677777777776532     2222 23677


Q ss_pred             ceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388          231 KTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN  307 (440)
Q Consensus       231 ~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~  307 (440)
                      +.|.+. +|   .+.   .......|+|++|.++++....   ..+.++++|+.+++.......  ..+   ..+...++
T Consensus       102 ~~L~L~-~N---~l~---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~---~~l~~~l~  169 (487)
T 3oja_A          102 ETLHAA-NN---NIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNF---AELAASSD  169 (487)
T ss_dssp             CEEECC-SS---CCC---CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--EEG---GGGGGGTT
T ss_pred             CEEECc-CC---cCC---CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--cCh---HHHhhhCC
Confidence            777776 55   221   1122234677777776654332   234556777766664332210  011   33445678


Q ss_pred             cccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCccc--cccceeEEEEE
Q 041388          308 SCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPHC--LVHTVKNIEIK  380 (440)
Q Consensus       308 ~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c--~~~~L~~v~i~  380 (440)
                      +++.|.|+.+.+..+.   .+++|+.|+ ..+  ..  ..+..-+..+|+|+.|. ..+.=...|..  ...+|+.+.+.
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N--~l--~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN--KL--AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             TCCEEECTTSCCCEEECCCCCTTCCEEECCSS--CC--CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred             cccEEecCCCccccccccccCCCCCEEECCCC--CC--CCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence            8888888887776655   355666665 333  11  11111245678888887 42211223322  23567777775


Q ss_pred             e
Q 041388          381 G  381 (440)
Q Consensus       381 ~  381 (440)
                      +
T Consensus       246 ~  246 (487)
T 3oja_A          246 G  246 (487)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.30  E-value=7.6e-08  Score=101.95  Aligned_cols=230  Identities=14%  Similarity=0.102  Sum_probs=111.0

Q ss_pred             CcEEEEEEEccCceeecCc--cccccccccEEEecCCccccCCC-C-cccccccceEEEE-EEeCCCcchh--hhhccCC
Q 041388          131 EVGEIQLYLGQQSRVELPE--AIYSAACLKVLTLDSDFSIQVPS-S-GTCFPCVKILSVR-LENPNKSVTE--NLFCSCP  203 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~L~-~~~~~~~~l~--~lls~cp  203 (440)
                      +++.|++..+. -...+|.  .+..+++|++|+|.++......+ . ...+++|++|+|. +.+. +....  ..+.+|+
T Consensus       101 ~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          101 SLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-GANVVGWVLSDGCG  178 (768)
T ss_dssp             TCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE-EETHHHHHHTTCCT
T ss_pred             CCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC-CcCChhhhhhccCC
Confidence            56666654221 1123454  55667777777777332222222 1 1456677777777 5554 21111  1256677


Q ss_pred             CcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCee
Q 041388          204 SLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLK  280 (440)
Q Consensus       204 ~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~  280 (440)
                      .|++|++.+|...+.  ... -..++|+.|.+. +|   .+...... .-..++|++|.++++....   ..+.++++|+
T Consensus       179 ~L~~L~Ls~n~l~~~--~~~-~~l~~L~~L~Ls-~n---~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  250 (768)
T 3rgz_A          179 ELKHLAISGNKISGD--VDV-SRCVNLEFLDVS-SN---NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK  250 (768)
T ss_dssp             TCCEEECCSSEEESC--CBC-TTCTTCCEEECC-SS---CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred             CCCEEECCCCccccc--CCc-ccCCcCCEEECc-CC---cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence            777777776643211  111 234667777776 55   22111111 1235677777776654331   1245566777


Q ss_pred             EEEEEEeecccccCCchhhhhhhcccccccEEEEecccee-Eee-----ecccccccc-cccccchhHHHHHHHhccCCC
Q 041388          281 IVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS-SVE-----LHRNGGRTD-RMASTANRAKKLTELGKSCPA  353 (440)
Q Consensus       281 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~-~~~-----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~  353 (440)
                      .+++.......  ..+      ...+++++.|.++.+.+. .++     .+.+|++|+ ..+  ... ..+...+..+++
T Consensus       251 ~L~Ls~n~l~~--~~~------~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n--~l~-~~~p~~~~~l~~  319 (768)
T 3rgz_A          251 LLNISSNQFVG--PIP------PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN--HFY-GAVPPFFGSCSL  319 (768)
T ss_dssp             EEECCSSCCEE--SCC------CCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS--EEE-ECCCGGGGGCTT
T ss_pred             EEECCCCcccC--ccC------ccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC--cCC-CccchHHhcCCC
Confidence            66664443210  000      015667777777666554 222     135556555 322  110 012234556777


Q ss_pred             ccccc-cccCC-CCCc---cccccceeEEEEEe
Q 041388          354 QEQFG-WLESD-FDVP---HCLVHTVKNIEIKG  381 (440)
Q Consensus       354 L~~L~-~~~~~-~~~~---~c~~~~L~~v~i~~  381 (440)
                      |++|. ..+.- ...|   -....+|+.+.+.+
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            77776 32211 1222   12245677777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.30  E-value=9e-07  Score=88.17  Aligned_cols=234  Identities=12%  Similarity=0.026  Sum_probs=106.1

Q ss_pred             CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      +++.|++...  ....+|...+ .+++|++|+|.++.....+ .....+++|++|+|. ..+.  ......+..++.|++
T Consensus        81 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           81 NLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--YISHRAFSGLNSLEQ  156 (477)
T ss_dssp             TCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC--EECTTSSTTCTTCCE
T ss_pred             cCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc--eeChhhccCCCCCCE
Confidence            4555555322  1233444332 3566666666632222211 124455666666666 4333  111223445666666


Q ss_pred             EEEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEE
Q 041388          208 LSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVK  283 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~  283 (440)
                      |.|.+|....+  ..-.+ ..++|+.|.+. ++   .+.......--..++|++|.++++......   .....+|+.++
T Consensus       157 L~l~~n~l~~~--~~~~l~~l~~L~~L~l~-~n---~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          157 LTLEKCNLTSI--PTEALSHLHGLIVLRLR-HL---NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             EEEESCCCSSC--CHHHHTTCTTCCEEEEE-SC---CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             EECCCCcCccc--ChhHhcccCCCcEEeCC-CC---cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            66666533221  10001 23566666666 44   111000000112456666666653321111   11223566655


Q ss_pred             EEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc-
Q 041388          284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG-  358 (440)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~-  358 (440)
                      +......   ..+   ...+..+++++.|.|+.+.+..+.  .|.++.+|+  .+.+.... ......+..+++|+.|. 
T Consensus       231 l~~n~l~---~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          231 ITHCNLT---AVP---YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             EESSCCC---SCC---HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEEC
T ss_pred             CcCCccc---ccC---HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEEC
Confidence            5443321   111   344567788888888877766655  344444444  22201111 01123455678888887 


Q ss_pred             cccCCCCCccc---cccceeEEEEEe
Q 041388          359 WLESDFDVPHC---LVHTVKNIEIKG  381 (440)
Q Consensus       359 ~~~~~~~~~~c---~~~~L~~v~i~~  381 (440)
                      ..+.=...+..   ...+|+.+.+.+
T Consensus       304 ~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          304 SGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             CCCcCceeCHhHcCCCcccCEEEccC
Confidence            32211122211   235688887764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.29  E-value=3.4e-07  Score=90.37  Aligned_cols=92  Identities=12%  Similarity=0.012  Sum_probs=41.1

Q ss_pred             cccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc---cccccee
Q 041388          304 AGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH---CLVHTVK  375 (440)
Q Consensus       304 ~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~---c~~~~L~  375 (440)
                      ..+++++.|.|+.+.+..+.  .|.++++|+  .+..+... ......+..+++|+.|. ..+.=...+.   ....+|+
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            45566677777666555553  344433333  12100100 00112345567777776 3211111111   1235677


Q ss_pred             EEEEEe--eecCcchHHHHHHHH
Q 041388          376 NIEIKG--VQGDEDERPLLKYLL  396 (440)
Q Consensus       376 ~v~i~~--~~~~~~~~~~~~~ll  396 (440)
                      .+.+.+  +........+..++-
T Consensus       283 ~L~L~~Np~~CdC~l~~l~~~~~  305 (440)
T 3zyj_A          283 RIHLHHNPWNCNCDILWLSWWIK  305 (440)
T ss_dssp             EEECCSSCEECSSTTHHHHHHHH
T ss_pred             EEEcCCCCccCCCCchHHHHHHH
Confidence            777763  344444344444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.29  E-value=7.6e-08  Score=95.29  Aligned_cols=107  Identities=14%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             CCcEEEEEEEccCceeecC-ccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcch-hhhhccCCCc
Q 041388          130 REVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVT-ENLFCSCPSL  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l-~~lls~cp~L  205 (440)
                      .+++.|++..+.- ...+| ..+..+++|++|+|+++..... +.....+++|++|+|. +.+. +... ...+..++.|
T Consensus        54 ~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           54 QDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSL  131 (455)
T ss_dssp             TTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTC
T ss_pred             ccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCcccC
Confidence            3688887754322 12343 3455689999999995433233 3346678999999999 8776 3222 2347789999


Q ss_pred             ceEEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          206 EELSVTCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      ++|+|.++......+..+--..++|+.|.+. ++
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~-~n  164 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLT-FN  164 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECT-TC
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCC-CC
Confidence            9999999854332101111235789999887 65

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.29  E-value=2.4e-07  Score=85.73  Aligned_cols=56  Identities=20%  Similarity=0.170  Sum_probs=26.8

Q ss_pred             ccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          155 ACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ++|++|+|.+ ..+.. ++ ....+++|++|+|. ..+.  ......+..++.|++|++.++
T Consensus        32 ~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSC
T ss_pred             CCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCCC
Confidence            4566666662 22222 21 23445566666665 4443  111223445566666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.28  E-value=3e-07  Score=94.51  Aligned_cols=201  Identities=13%  Similarity=0.060  Sum_probs=94.6

Q ss_pred             CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      +++.|++..+.  ...+|. .+..+++|++|+|+++.....++ ....+++|++|+|. +.+.  .....++..++.|+.
T Consensus        76 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           76 QVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTT  151 (597)
T ss_dssp             CCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCE
T ss_pred             CCcEEECCCCC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCE
Confidence            56666553221  223333 34446667777776332222222 23456667777776 5554  122234456667777


Q ss_pred             EEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE-EecCCceEEEEeccccccEEeeCCCCeeEEEEEE
Q 041388          208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI  286 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~  286 (440)
                      |.|.++......+.. --..++|+.|.+. +|   .+.    .+. -..|+|+.|.++++....  +...++|+.+++..
T Consensus       152 L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~-~N---~l~----~~~~~~l~~L~~L~l~~n~l~~--l~~~~~L~~L~ls~  220 (597)
T 3oja_B          152 LSMSNNNLERIEDDT-FQATTSLQNLQLS-SN---RLT----HVDLSLIPSLFHANVSYNLLST--LAIPIAVEELDASH  220 (597)
T ss_dssp             EECCSSCCCBCCTTT-TTTCTTCCEEECT-TS---CCS----BCCGGGCTTCSEEECCSSCCSE--EECCTTCSEEECCS
T ss_pred             EEeeCCcCCCCChhh-hhcCCcCcEEECc-CC---CCC----CcChhhhhhhhhhhcccCcccc--ccCCchhheeeccC
Confidence            777665322110000 0123566666666 54   121    111 124566666666554332  23344555555433


Q ss_pred             eecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388          287 MHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       287 ~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      .....    .     .....++++.|.++.+.+....   .+++|+.|+ ..+  ... ......+..+++|+.|.
T Consensus       221 n~l~~----~-----~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~  284 (597)
T 3oja_B          221 NSINV----V-----RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--ELE-KIMYHPFVKMQRLERLY  284 (597)
T ss_dssp             SCCCE----E-----ECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CCC-EEESGGGTTCSSCCEEE
T ss_pred             Ccccc----c-----ccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC--ccC-CCCHHHhcCccCCCEEE
Confidence            22210    0     0012357788888776555444   445555555 322  111 01123455678888887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.27  E-value=1.8e-07  Score=88.11  Aligned_cols=225  Identities=10%  Similarity=0.047  Sum_probs=106.4

Q ss_pred             cccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccc
Q 041388          154 AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATL  230 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L  230 (440)
                      +++|++|+|. ...+...+  ....+++|++|+|. ..+.+..   . +..++.|++|++.++..     ..+. ..++|
T Consensus        33 ~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~l-----~~l~-~~~~L  101 (317)
T 3o53_A           33 AWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNYV-----QELL-VGPSI  101 (317)
T ss_dssp             GGGCSEEECT-TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSEE-----EEEE-ECTTC
T ss_pred             CCCCCEEECc-CCccCcCCHHHhhCCCcCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCcc-----cccc-CCCCc
Confidence            4455555555 22333222  23345556666655 4443111   1 44556666666655432     1111 22556


Q ss_pred             ceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388          231 KTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN  307 (440)
Q Consensus       231 ~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~  307 (440)
                      +.|.+. ++   .+.   .......++|++|.++++....   ..+.++++|+.+++.......  ..+   ..+...++
T Consensus       102 ~~L~l~-~n---~l~---~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~---~~~~~~l~  169 (317)
T 3o53_A          102 ETLHAA-NN---NIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNF---AELAASSD  169 (317)
T ss_dssp             CEEECC-SS---CCS---EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--EEG---GGGGGGTT
T ss_pred             CEEECC-CC---ccC---CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--ccH---HHHhhccC
Confidence            666655 44   121   1112224566666665544322   123445566665553322210  001   33445678


Q ss_pred             cccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc--ccccceeEEEEE
Q 041388          308 SCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH--CLVHTVKNIEIK  380 (440)
Q Consensus       308 ~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~--c~~~~L~~v~i~  380 (440)
                      +++.|.++.+.+..+.   .+.+|+.|+ ..+  ...  .+..-+..+++|+.|. ..+.=...|.  ....+|+.+.+.
T Consensus       170 ~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N--~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN--KLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             TCCEEECTTSCCCEEECCCCCTTCCEEECCSS--CCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred             cCCEEECCCCcCcccccccccccCCEEECCCC--cCC--cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence            8888888877776655   455666666 333  111  1111255678888887 4221112222  123567777775


Q ss_pred             eeecCcchHHHHHHHHhhccccceEEEE
Q 041388          381 GVQGDEDERPLLKYLLQFAAAMEKMLMW  408 (440)
Q Consensus       381 ~~~~~~~~~~~~~~ll~~a~~L~~m~i~  408 (440)
                      +-.-..   ......+...+.|+.+.+.
T Consensus       246 ~N~~~~---~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          246 GNGFHC---GTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCCBH---HHHHHHHHTCHHHHHHHHH
T ss_pred             CCCccC---cCHHHHHhccccceEEECC
Confidence            433221   1233344555666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.26  E-value=1.1e-07  Score=97.94  Aligned_cols=138  Identities=13%  Similarity=0.037  Sum_probs=77.9

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .+++.+++....  ...+| .+..+++|++|++. .+.+...+.. .+++|++|++. .... . .+  -+..+|.|++|
T Consensus       285 ~~L~~L~l~~~~--~~~l~-~l~~~~~L~~L~l~-~n~l~~lp~~-~l~~L~~L~l~~n~~~-~-~~--~~~~l~~L~~L  355 (606)
T 3vq2_A          285 ANVSAMSLAGVS--IKYLE-DVPKHFKWQSLSII-RCQLKQFPTL-DLPFLKSLTLTMNKGS-I-SF--KKVALPSLSYL  355 (606)
T ss_dssp             TTCSEEEEESCC--CCCCC-CCCTTCCCSEEEEE-SCCCSSCCCC-CCSSCCEEEEESCSSC-E-EC--CCCCCTTCCEE
T ss_pred             CCCCEEEecCcc--chhhh-hccccccCCEEEcc-cccCcccccC-CCCccceeeccCCcCc-c-ch--hhccCCCCCEE
Confidence            478888886533  23455 56668888999988 4444555534 78888888888 6433 1 11  24467888888


Q ss_pred             EEeeeeCCCCCCCcEE------ecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE----EeeCCCC
Q 041388          209 SVTCELHDDTPPPNLI------ISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF----VMHDLHS  278 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~------i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~----~~~~~~~  278 (440)
                      ++.++..     ..+.      ...++|+.|.+. +|   .+.. ........++|++|.++++.....    .+.++++
T Consensus       356 ~ls~n~l-----~~~~~~~~~~~~~~~L~~L~L~-~n---~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          356 DLSRNAL-----SFSGCCSYSDLGTNSLRHLDLS-FN---GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             ECCSSCE-----EEEEECCHHHHCCSCCCEEECC-SC---SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             ECcCCcc-----CCCcchhhhhccCCcccEeECC-CC---cccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            8877532     1111      123677777776 55   1210 000011246677777765432211    2345566


Q ss_pred             eeEEEEEE
Q 041388          279 LKIVKLDI  286 (440)
Q Consensus       279 L~~~~i~~  286 (440)
                      |+.+++..
T Consensus       426 L~~L~l~~  433 (606)
T 3vq2_A          426 LLYLDISY  433 (606)
T ss_dssp             CCEEECTT
T ss_pred             CCEEECcC
Confidence            66666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.25  E-value=1.5e-06  Score=89.37  Aligned_cols=148  Identities=14%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-ccc
Q 041388          151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSA  228 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~  228 (440)
                      +..+++|+.|++. +..+...+....+++|++|++. +.+. .  +..+  .+|.|+.|.+.++..  .  ..+.+ ..+
T Consensus       281 ~~~l~~L~~L~l~-~~~~~~l~~l~~~~~L~~L~l~~n~l~-~--lp~~--~l~~L~~L~l~~n~~--~--~~~~~~~l~  350 (606)
T 3vq2_A          281 FHCLANVSAMSLA-GVSIKYLEDVPKHFKWQSLSIIRCQLK-Q--FPTL--DLPFLKSLTLTMNKG--S--ISFKKVALP  350 (606)
T ss_dssp             CGGGTTCSEEEEE-SCCCCCCCCCCTTCCCSEEEEESCCCS-S--CCCC--CCSSCCEEEEESCSS--C--EECCCCCCT
T ss_pred             cccCCCCCEEEec-CccchhhhhccccccCCEEEcccccCc-c--cccC--CCCccceeeccCCcC--c--cchhhccCC
Confidence            4457788888888 4445444445667788888888 7764 2  2233  788888888888732  2  22211 347


Q ss_pred             ccceeEEEeecccccccccccEEE------EecCCceEEEEeccccccE--EeeCCCCeeEEEEEEeecccccCCchhhh
Q 041388          229 TLKTCKLIVRSEDMLFREVDYMLT------ITAPKLESLEIYSDLLGSF--VMHDLHSLKIVKLDIMHAEWAQVDPYRAI  300 (440)
Q Consensus       229 ~L~~L~i~~~~~~~~~~~~~~~l~------~~~p~L~~L~~~~~~~~~~--~~~~~~~L~~~~i~~~~~~~~~~~~~~~~  300 (440)
                      +|+.|.+. +|   .+    ..+.      ...++|++|.++++.....  .+.++++|+.+++........  .+   .
T Consensus       351 ~L~~L~ls-~n---~l----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~---~  417 (606)
T 3vq2_A          351 SLSYLDLS-RN---AL----SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV--TE---F  417 (606)
T ss_dssp             TCCEEECC-SS---CE----EEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST--TT---T
T ss_pred             CCCEEECc-CC---cc----CCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc--cC---h
Confidence            88888887 65   22    1111      1358888888887654332  345678888887754432210  00   1


Q ss_pred             hhhcccccccEEEEeccceeE
Q 041388          301 QLLAGINSCKYLYLSAGIMSS  321 (440)
Q Consensus       301 ~~l~~~~~l~~L~l~~~~~~~  321 (440)
                      ..+..+++++.|.++.+.+..
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEE
T ss_pred             hhhhccccCCEEECcCCCCCc
Confidence            233455556666665544433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.24  E-value=4.9e-08  Score=100.47  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             ccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          153 SAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      .+++|++|+|.+ ..+.. |.....+++|++|++. ..+.  ......+..+|.|+.|.+.++
T Consensus       276 ~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          276 CFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFE--NLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             TCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCCCS--BGGGGCGGGCTTCSEEECCSC
T ss_pred             cccCCCEEeccC-CccCCCChhhcccccCCEEECccCCcC--cCchhhhhccCcCCEEECCCC
Confidence            366666666663 23333 2234455666666666 5554  112233455666666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.24  E-value=5e-08  Score=94.60  Aligned_cols=37  Identities=11%  Similarity=0.091  Sum_probs=20.2

Q ss_pred             cccccceEEEE-EEeCCCc---chhhhhccCCCcceEEEeee
Q 041388          176 CFPCVKILSVR-LENPNKS---VTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       176 ~~~~L~~L~L~-~~~~~~~---~l~~lls~cp~Le~L~L~~c  213 (440)
                      .+++|++|+|. +.+. +.   .+...+..|+.|+.|.|.+|
T Consensus        92 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFG-PTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TCTTCCEEECCSCCCC-TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hCCcccEEECCCCcCC-HHHHHHHHHHHHhCCCCCEEECcCC
Confidence            44566666666 5555 22   23334455666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.24  E-value=8.7e-07  Score=83.04  Aligned_cols=166  Identities=13%  Similarity=0.104  Sum_probs=91.7

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .+++.|++..+.  ...++. +..+++|++|+|+ ...+...+....+++|++|+|. +.+. +  +.. +..++.|+.|
T Consensus        63 ~~L~~L~L~~n~--i~~~~~-~~~l~~L~~L~L~-~n~l~~~~~~~~l~~L~~L~l~~n~l~-~--~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           63 NNLIGLELKDNQ--ITDLAP-LKNLTKITELELS-GNPLKNVSAIAGLQSIKTLDLTSTQIT-D--VTP-LAGLSNLQVL  134 (308)
T ss_dssp             TTCCEEECCSSC--CCCCGG-GTTCCSCCEEECC-SCCCSCCGGGTTCTTCCEEECTTSCCC-C--CGG-GTTCTTCCEE
T ss_pred             CCCCEEEccCCc--CCCChh-HccCCCCCEEEcc-CCcCCCchhhcCCCCCCEEECCCCCCC-C--chh-hcCCCCCCEE
Confidence            367777764322  233444 5557777777777 4445444445567777777777 6665 2  122 5677777877


Q ss_pred             EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEe
Q 041388          209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIM  287 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~  287 (440)
                      .+.++.....  .. --..++|+.|.+. +|   .+.. ... .-..++|+.|.++++..... .+..+++|+.+++...
T Consensus       135 ~l~~n~l~~~--~~-l~~l~~L~~L~l~-~n---~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          135 YLDLNQITNI--SP-LAGLTNLQYLSIG-NA---QVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN  205 (308)
T ss_dssp             ECCSSCCCCC--GG-GGGCTTCCEEECC-SS---CCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ECCCCccCcC--cc-ccCCCCccEEEcc-CC---cCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC
Confidence            7777644322  11 1123677777777 65   2211 111 12356777777776543322 1455666666666443


Q ss_pred             ecccccCCchhhhhhhcccccccEEEEecccee
Q 041388          288 HAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS  320 (440)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~  320 (440)
                      ....        ...+..+++++.|.++.+.+.
T Consensus       206 ~l~~--------~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          206 QISD--------VSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCB--------CGGGTTCTTCCEEEEEEEEEE
T ss_pred             ccCc--------cccccCCCCCCEEEccCCeee
Confidence            3211        112456667777777665443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.24  E-value=4.6e-07  Score=89.85  Aligned_cols=191  Identities=8%  Similarity=0.019  Sum_probs=127.5

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      ..++.|++....  ...+| .+..+++|++|+|+ ...+...+ ...+++|++|+|. ..+. .-.    +..++.|++|
T Consensus        42 ~~L~~L~Ls~n~--l~~~~-~l~~l~~L~~L~Ls-~n~l~~~~-~~~l~~L~~L~Ls~N~l~-~~~----~~~l~~L~~L  111 (457)
T 3bz5_A           42 ATLTSLDCHNSS--ITDMT-GIEKLTGLTKLICT-SNNITTLD-LSQNTNLTYLACDSNKLT-NLD----VTPLTKLTYL  111 (457)
T ss_dssp             TTCCEEECCSSC--CCCCT-TGGGCTTCSEEECC-SSCCSCCC-CTTCTTCSEEECCSSCCS-CCC----CTTCTTCCEE
T ss_pred             CCCCEEEccCCC--cccCh-hhcccCCCCEEEcc-CCcCCeEc-cccCCCCCEEECcCCCCc-eee----cCCCCcCCEE
Confidence            478888885432  22345 56778999999999 55566555 6778999999999 8877 322    6788999999


Q ss_pred             EEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEE-ecCCceEEEEecc-ccccEEeeCCCCeeEEEEE
Q 041388          209 SVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTI-TAPKLESLEIYSD-LLGSFVMHDLHSLKIVKLD  285 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~-~~p~L~~L~~~~~-~~~~~~~~~~~~L~~~~i~  285 (440)
                      ++.++....     +.+ ..++|+.|.+. ++   .+.    .+.+ ..++|++|.++++ ....+.+..+++|+.+++.
T Consensus       112 ~L~~N~l~~-----l~~~~l~~L~~L~l~-~N---~l~----~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          112 NCDTNKLTK-----LDVSQNPLLTYLNCA-RN---TLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS  178 (457)
T ss_dssp             ECCSSCCSC-----CCCTTCTTCCEEECT-TS---CCS----CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred             ECCCCcCCe-----ecCCCCCcCCEEECC-CC---ccc----eeccccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence            999875422     223 34789999888 66   332    1222 3678999998876 3344556778889888876


Q ss_pred             EeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388          286 IMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       286 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ......        .. +..+++++.|.++.+.+..+.  .+++|+.|+ ...  ...  .+.  +..+|+|+.|.
T Consensus       179 ~n~l~~--------l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N--~l~--~ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          179 FNKITE--------LD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN--KLT--EID--VTPLTQLTYFD  239 (457)
T ss_dssp             SSCCCC--------CC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSS--CCS--CCC--CTTCTTCSEEE
T ss_pred             CCccce--------ec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCC--ccc--ccC--ccccCCCCEEE
Confidence            544321        11 467788999999877665543  455666666 333  111  122  66788999888

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.23  E-value=6.9e-07  Score=88.60  Aligned_cols=237  Identities=11%  Similarity=0.046  Sum_probs=151.5

Q ss_pred             CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388          102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK  181 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~  181 (440)
                      +.++.+.+....-....    .+  ..-.+++.|++..+.  ...+|  +..+++|++|+|+ ...+...+ ...+++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~~----~l--~~l~~L~~L~Ls~n~--l~~~~--~~~l~~L~~L~Ls-~N~l~~~~-~~~l~~L~  109 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT----GI--EKLTGLTKLICTSNN--ITTLD--LSQNTNLTYLACD-SNKLTNLD-VTPLTKLT  109 (457)
T ss_dssp             TTCCEEECCSSCCCCCT----TG--GGCTTCSEEECCSSC--CSCCC--CTTCTTCSEEECC-SSCCSCCC-CTTCTTCC
T ss_pred             CCCCEEEccCCCcccCh----hh--cccCCCCEEEccCCc--CCeEc--cccCCCCCEEECc-CCCCceee-cCCCCcCC
Confidence            35777777654322211    11  223589999886432  22234  5679999999999 55566555 77899999


Q ss_pred             eEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEE-ecCCc
Q 041388          182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTI-TAPKL  258 (440)
Q Consensus       182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~-~~p~L  258 (440)
                      +|+|. ..+. .-  .  +..++.|++|.+.++..     ..+.+ ..++|+.|.+. .|.   .   ...+.+ ..++|
T Consensus       110 ~L~L~~N~l~-~l--~--~~~l~~L~~L~l~~N~l-----~~l~l~~l~~L~~L~l~-~n~---~---~~~~~~~~l~~L  172 (457)
T 3bz5_A          110 YLNCDTNKLT-KL--D--VSQNPLLTYLNCARNTL-----TEIDVSHNTQLTELDCH-LNK---K---ITKLDVTPQTQL  172 (457)
T ss_dssp             EEECCSSCCS-CC--C--CTTCTTCCEEECTTSCC-----SCCCCTTCTTCCEEECT-TCS---C---CCCCCCTTCTTC
T ss_pred             EEECCCCcCC-ee--c--CCCCCcCCEEECCCCcc-----ceeccccCCcCCEEECC-CCC---c---ccccccccCCcC
Confidence            99999 8877 32  2  67899999999999754     22233 34789999998 661   1   111122 36899


Q ss_pred             eEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc-ccc
Q 041388          259 ESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD-RMA  335 (440)
Q Consensus       259 ~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~-~~~  335 (440)
                      ++|.++++....+.+.++++|+.+.+.......        . -+..+++++.|.++.+.+..++  .+++|+.|+ ...
T Consensus       173 ~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~--------~-~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITK--------L-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CEEECCSSCCCCCCCTTCTTCCEEECCSSCCSC--------C-CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSS
T ss_pred             CEEECCCCccceeccccCCCCCEEECcCCcCCe--------e-ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCC
Confidence            999999887666668889999998886554321        1 1467899999999888776655  455666665 332


Q ss_pred             ccchhHHHHHHHhccCCCccccc-cc----------cCC-CCCccccccceeEEEEEee
Q 041388          336 STANRAKKLTELGKSCPAQEQFG-WL----------ESD-FDVPHCLVHTVKNIEIKGV  382 (440)
Q Consensus       336 ~~~~~~~~l~~lL~~~p~L~~L~-~~----------~~~-~~~~~c~~~~L~~v~i~~~  382 (440)
                        ...  .+  -+..+++|+.|. ..          +.. ...|.....+|+.+.+.+.
T Consensus       244 --~l~--~~--~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          244 --PLT--EL--DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN  296 (457)
T ss_dssp             --CCS--CC--CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred             --cCC--Cc--CHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCC
Confidence              111  11  145678887665 21          111 1122223467888877643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.23  E-value=2.6e-07  Score=91.56  Aligned_cols=92  Identities=9%  Similarity=-0.010  Sum_probs=42.2

Q ss_pred             cccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc---cccccee
Q 041388          304 AGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH---CLVHTVK  375 (440)
Q Consensus       304 ~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~---c~~~~L~  375 (440)
                      ..+++++.|.|+.+.+..+.  .|.++++|+  .+..+... ......+..+++|+.|. ..+.=...+.   ....+|+
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            45566777777666555543  344443333  12100110 00112345677777776 3221111221   1246678


Q ss_pred             EEEEEe--eecCcchHHHHHHHH
Q 041388          376 NIEIKG--VQGDEDERPLLKYLL  396 (440)
Q Consensus       376 ~v~i~~--~~~~~~~~~~~~~ll  396 (440)
                      .+.+.+  +.+...-..+..++-
T Consensus       294 ~L~L~~Np~~CdC~~~~l~~~l~  316 (452)
T 3zyi_A          294 ELHLHHNPWNCDCDILWLAWWLR  316 (452)
T ss_dssp             EEECCSSCEECSTTTHHHHHHHH
T ss_pred             EEEccCCCcCCCCCchHHHHHHH
Confidence            887764  344444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.22  E-value=2.9e-07  Score=91.14  Aligned_cols=181  Identities=20%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             CcEEEEEEEccCceeecC-ccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      +++.|++....  ...++ ..+..+++|++|+|.++ .+.. ++ ....+++|++|+|. ..+.  ..-...+..+|.|+
T Consensus       100 ~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~  174 (452)
T 3zyi_A          100 HLEVLQLGRNS--IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIE--SIPSYAFNRVPSLM  174 (452)
T ss_dssp             TCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCC--EECTTTTTTCTTCC
T ss_pred             CCCEEECCCCc--cCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcc--eeCHhHHhcCCccc
Confidence            66666664321  12233 33444777777777743 3333 22 24457777777777 6554  12233456777888


Q ss_pred             eEEEeeeeCCCCCCCcEEe----cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE---EeeCCCCe
Q 041388          207 ELSVTCELHDDTPPPNLII----SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF---VMHDLHSL  279 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i----~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L  279 (440)
                      .|+|.+|..  +  ..+..    ..++|+.|.+. +|   .+.. ... ....++|++|.++++.....   .+.++++|
T Consensus       175 ~L~l~~~~~--l--~~i~~~~~~~l~~L~~L~L~-~n---~l~~-~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          175 RLDLGELKK--L--EYISEGAFEGLFNLKYLNLG-MC---NIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             EEECCCCTT--C--CEECTTTTTTCTTCCEEECT-TS---CCSS-CCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred             EEeCCCCCC--c--cccChhhccCCCCCCEEECC-CC---cccc-ccc-ccccccccEEECcCCcCcccCcccccCccCC
Confidence            887777532  2  22211    23677778777 65   2311 111 12357888888877654433   34567788


Q ss_pred             eEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee-----ecccccccc
Q 041388          280 KIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE-----LHRNGGRTD  332 (440)
Q Consensus       280 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-----~f~~L~~L~  332 (440)
                      +.+++.......  ..    ...+.++++++.|.|+.+.+..+.     .+++|+.|+
T Consensus       245 ~~L~L~~n~l~~--~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          245 KKLWVMNSQVSL--IE----RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             CEEECTTSCCCE--EC----TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred             CEEEeCCCcCce--EC----HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence            877764433211  00    233567888999999888776655     344555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.21  E-value=1.5e-08  Score=100.55  Aligned_cols=298  Identities=11%  Similarity=0.020  Sum_probs=161.0

Q ss_pred             ceeeEEEEeeCCCChhhHHHHHHHHHc--CCcEEEEEEEccC---ceeecCccccccccccEEEecCCccccCCC--C--
Q 041388          103 KIGKFSLYCSRPTNLARFYDWIATALM--REVGEIQLYLGQQ---SRVELPEAIYSAACLKVLTLDSDFSIQVPS--S--  173 (440)
Q Consensus       103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~--~~l~~L~l~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~--  173 (440)
                      .++.+.++...- ....+..+......  .++++|++..+.-   +...+|..+..+++|++|+|++ ..+....  .  
T Consensus        57 ~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~  134 (461)
T 1z7x_W           57 ALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLC  134 (461)
T ss_dssp             TCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHH
T ss_pred             CcCEEeCCCCcC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHH
Confidence            588877764221 12223333322221  1588888854321   1124566677789999999994 4443211  0  


Q ss_pred             ---cccccccceEEEE-EEeCCCc---chhhhhccCCCcceEEEeeeeCCCCCCCcEE--e--cccccceeEEEeecccc
Q 041388          174 ---GTCFPCVKILSVR-LENPNKS---VTENLFCSCPSLEELSVTCELHDDTPPPNLI--I--SSATLKTCKLIVRSEDM  242 (440)
Q Consensus       174 ---~~~~~~L~~L~L~-~~~~~~~---~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~--i--~~~~L~~L~i~~~~~~~  242 (440)
                         ....++|++|+|. +.+. +.   .+...+..||.|++|++.++.........+.  +  ..++|+.|.+. +|   
T Consensus       135 ~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~-~n---  209 (461)
T 1z7x_W          135 EGLLDPQCRLEKLQLEYCSLS-AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE-SC---  209 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCB-GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT-TS---
T ss_pred             HHHhcCCCcceEEECCCCCCC-HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc-CC---
Confidence               1124579999999 8877 43   3456677899999999988742111000010  0  13488999888 76   


Q ss_pred             cccccc----cEEEEecCCceEEEEeccccccE--------EeeCCCCeeEEEEEEeecccccCCchhh-hhhhcccccc
Q 041388          243 LFREVD----YMLTITAPKLESLEIYSDLLGSF--------VMHDLHSLKIVKLDIMHAEWAQVDPYRA-IQLLAGINSC  309 (440)
Q Consensus       243 ~~~~~~----~~l~~~~p~L~~L~~~~~~~~~~--------~~~~~~~L~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~l  309 (440)
                      .+....    ....-..++|++|.++++.....        ....+++|+.+++..+....   ..... ...+..++++
T Consensus       210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L  286 (461)
T 1z7x_W          210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA---KGCGDLCRVLRAKESL  286 (461)
T ss_dssp             CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH---HHHHHHHHHHHHCTTC
T ss_pred             CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH---HHHHHHHHHHhhCCCc
Confidence            232100    00011458899999887643221        11246788887775543210   00001 3445567888


Q ss_pred             cEEEEeccceeEee----------ecccccccc-cccc-cchhHHHHHHHhccCCCccccc-cccCC-CC----Ccccc-
Q 041388          310 KYLYLSAGIMSSVE----------LHRNGGRTD-RMAS-TANRAKKLTELGKSCPAQEQFG-WLESD-FD----VPHCL-  370 (440)
Q Consensus       310 ~~L~l~~~~~~~~~----------~f~~L~~L~-~~~~-~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~----~~~c~-  370 (440)
                      +.|.++.+.+....          ..++|++|. ..+. .......+...+..+++|++|. ..+.- ..    ..+.+ 
T Consensus       287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  366 (461)
T 1z7x_W          287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG  366 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence            88888776553221          124677776 4331 1223445677777888888887 32210 00    01111 


Q ss_pred             --ccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEee
Q 041388          371 --VHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAK  410 (440)
Q Consensus       371 --~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~  410 (440)
                        ..+|+.+.+.+..-....+..+...+.+.+.|+.+.+...
T Consensus       367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence              2467777776554333333344444566777777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.21  E-value=1.5e-07  Score=88.45  Aligned_cols=201  Identities=10%  Similarity=0.029  Sum_probs=110.1

Q ss_pred             ceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCcccc-C-CCCccccccc
Q 041388          103 KIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQ-V-PSSGTCFPCV  180 (440)
Q Consensus       103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~-~-~~~~~~~~~L  180 (440)
                      .|+.+.+....-.....+...+.  .-..++.|++..+......+|..+..+++|++|+|. ...+. . +.....+++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGGGGGCTTC
T ss_pred             eEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc-CCeeCCcCCHHHhCCCCC
Confidence            57777776543221001111111  124788888863222234677777788999999998 44443 3 3345678889


Q ss_pred             ceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCce
Q 041388          181 KILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLE  259 (440)
Q Consensus       181 ~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~  259 (440)
                      ++|+|. ..+.  ..+...+..++.|++|.+.++...+..+..+.--.++|+.|.+. ++   .+.. ...-.+...+|+
T Consensus       128 ~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N---~l~~-~~~~~~~~l~L~  200 (313)
T 1ogq_A          128 VTLDFSYNALS--GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RN---RLTG-KIPPTFANLNLA  200 (313)
T ss_dssp             CEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SS---EEEE-ECCGGGGGCCCS
T ss_pred             CEEeCCCCccC--CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CC---eeec-cCChHHhCCccc
Confidence            999998 7765  23445567789999999888643110001111111378888887 55   2210 000011122388


Q ss_pred             EEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee
Q 041388          260 SLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS  320 (440)
Q Consensus       260 ~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~  320 (440)
                      +|.++++....   ..+.++++|+.+++......    ..   ...+..+++++.|.++.+.+.
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----~~---~~~~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FD---LGKVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC----CB---GGGCCCCTTCCEEECCSSCCE
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCcee----ee---cCcccccCCCCEEECcCCccc
Confidence            88887654321   12456677777666443321    11   112455677777777766655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.19  E-value=4.4e-07  Score=83.40  Aligned_cols=100  Identities=14%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      .+++|.+....  ...+ ..+..+++|++|+|. +..+...+....+++|++|+|. ..+.  ......+..++.|++|.
T Consensus        42 ~L~~L~l~~~~--i~~~-~~l~~l~~L~~L~l~-~n~l~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           42 SIDQIIANNSD--IKSV-QGIQYLPNVRYLALG-GNKLHDISALKELTNLTYLILTGNQLQ--SLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TCCEEECTTSC--CCCC-TTGGGCTTCCEEECT-TSCCCCCGGGTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEE
T ss_pred             ceeeeeeCCCC--cccc-cccccCCCCcEEECC-CCCCCCchhhcCCCCCCEEECCCCccC--ccChhHhcCCcCCCEEE
Confidence            56666553221  1122 235557777777777 3444444445566777777777 6554  22233455677777777


Q ss_pred             EeeeeCCCCCCCcEEe-cccccceeEEEeec
Q 041388          210 VTCELHDDTPPPNLII-SSATLKTCKLIVRS  239 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~  239 (440)
                      +.+|.....  ..-.+ ..++|+.|.+. +|
T Consensus       116 L~~n~l~~~--~~~~~~~l~~L~~L~L~-~n  143 (272)
T 3rfs_A          116 LVENQLQSL--PDGVFDKLTNLTYLNLA-HN  143 (272)
T ss_dssp             CTTSCCCCC--CTTTTTTCTTCCEEECC-SS
T ss_pred             CCCCcCCcc--CHHHhccCCCCCEEECC-CC
Confidence            777643222  10001 23566666666 55

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.16  E-value=3.9e-07  Score=91.16  Aligned_cols=185  Identities=12%  Similarity=0.073  Sum_probs=96.5

Q ss_pred             ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-ccc
Q 041388          151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSA  228 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~  228 (440)
                      +..+++|++|+|+ +..+...+   ..++|++|+|. +.+. ...    ...+|.|+.|.|.++...+.  ....+ ..+
T Consensus        76 l~~l~~L~~L~Ls-~N~l~~l~---~~~~L~~L~L~~N~l~-~~~----~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~  144 (487)
T 3oja_A           76 LESLSTLRTLDLN-NNYVQELL---VGPSIETLHAANNNIS-RVS----CSRGQGKKNIYLANNKITML--RDLDEGCRS  144 (487)
T ss_dssp             CTTCTTCCEEECC-SSEEEEEE---ECTTCCEEECCSSCCC-CEE----ECCCSSCEEEECCSSCCCSG--GGBCGGGGS
T ss_pred             cccCCCCCEEEec-CCcCCCCC---CCCCcCEEECcCCcCC-CCC----ccccCCCCEEECCCCCCCCC--CchhhcCCC
Confidence            3345556666655 22332221   12556666655 5444 211    12356677777766543222  11122 235


Q ss_pred             ccceeEEEeeccccccccc-ccEEEEecCCceEEEEeccccccEE-eeCCCCeeEEEEEEeecccccCCchhhhhhhccc
Q 041388          229 TLKTCKLIVRSEDMLFREV-DYMLTITAPKLESLEIYSDLLGSFV-MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGI  306 (440)
Q Consensus       229 ~L~~L~i~~~~~~~~~~~~-~~~l~~~~p~L~~L~~~~~~~~~~~-~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~  306 (440)
                      +|+.|.+. ++   .+... ...+.-..++|++|.++++...... ...+++|+.+++.......    .   ..-+..+
T Consensus       145 ~L~~L~Ls-~N---~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~----~---~~~~~~l  213 (487)
T 3oja_A          145 RVQYLDLK-LN---EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF----M---GPEFQSA  213 (487)
T ss_dssp             SEEEEECT-TS---CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE----E---CGGGGGG
T ss_pred             CCCEEECC-CC---CCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCC----C---CHhHcCC
Confidence            67777776 54   22100 0000013477888888776544332 3346777777775543321    1   1125677


Q ss_pred             ccccEEEEeccceeEee-ec---ccccccccccccchhHHHHHHHhccCCCccccc
Q 041388          307 NSCKYLYLSAGIMSSVE-LH---RNGGRTDRMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       307 ~~l~~L~l~~~~~~~~~-~f---~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ++++.|.++.+.+..++ .+   ++|+.|. +.++...-..+..++..+|.|+.|.
T Consensus       214 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~-l~~N~l~c~~~~~~~~~l~~L~~l~  268 (487)
T 3oja_A          214 AGVTWISLRNNKLVLIEKALRFSQNLEHFD-LRGNGFHCGTLRDFFSKNQRVQTVA  268 (487)
T ss_dssp             TTCSEEECTTSCCCEECTTCCCCTTCCEEE-CTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred             CCccEEEecCCcCcccchhhccCCCCCEEE-cCCCCCcCcchHHHHHhCCCCcEEe
Confidence            89999999888777666 34   4455444 2211333346677788888888877

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.15  E-value=1.5e-06  Score=80.38  Aligned_cols=58  Identities=19%  Similarity=0.147  Sum_probs=25.9

Q ss_pred             ccccccEEEecCCccccC--CCCcccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeee
Q 041388          153 SAACLKVLTLDSDFSIQV--PSSGTCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      .+++|++|+|.++ .+..  +.....+++|++|+|. .. +.  ......+..++.|++|.+.++
T Consensus        54 ~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~--~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           54 ACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR--SVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC--CCCTTTTTTCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCcc--ccCHHHhcCCcCCCEEECCCC
Confidence            3555555555522 2211  1123345555555555 43 22  111223445555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.15  E-value=2.1e-06  Score=82.03  Aligned_cols=132  Identities=17%  Similarity=0.180  Sum_probs=69.8

Q ss_pred             eeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388          144 RVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP  220 (440)
Q Consensus       144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~  220 (440)
                      ...+|..++  ++|++|+|.+ ..+.. ++ ....+++|++|+|. ..+.  ......+..++.|++|+|.++....+  
T Consensus        43 l~~iP~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~--  115 (353)
T 2z80_A           43 LNSIPSGLT--EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNL--  115 (353)
T ss_dssp             CSSCCTTCC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSSC--
T ss_pred             ccccccccc--ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEECCCCcCCcC--
Confidence            345565443  4788888884 33333 22 35667888888888 6655  12233466778888888887643222  


Q ss_pred             CcEEe-cccccceeEEEeeccccccccccc-EEEEecCCceEEEEeccc-cccE---EeeCCCCeeEEEEEE
Q 041388          221 PNLII-SSATLKTCKLIVRSEDMLFREVDY-MLTITAPKLESLEIYSDL-LGSF---VMHDLHSLKIVKLDI  286 (440)
Q Consensus       221 ~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~-~l~~~~p~L~~L~~~~~~-~~~~---~~~~~~~L~~~~i~~  286 (440)
                      ..-.+ ..++|+.|.+. ++   .+..... ...-..++|++|.++++. ....   .+.++++|+.+++..
T Consensus       116 ~~~~~~~l~~L~~L~L~-~n---~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLL-GN---PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             CHHHHTTCTTCSEEECT-TC---CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             CHhHhCCCccCCEEECC-CC---CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            11111 23677777776 55   2211000 111235677777776642 2221   133455555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.14  E-value=6.3e-07  Score=88.42  Aligned_cols=199  Identities=17%  Similarity=0.093  Sum_probs=117.4

Q ss_pred             CCcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          130 REVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      .+++.|++..+.  ...++. .+..+++|++|+|.+ ..+...+  ....+++|++|+|. ..+.  ..-...+..++.|
T Consensus        88 ~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L  162 (440)
T 3zyj_A           88 RHLEILQLSRNH--IRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNNPIE--SIPSYAFNRIPSL  162 (440)
T ss_dssp             SSCCEEECCSSC--CCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEECCSCCCC--EECTTTTTTCTTC
T ss_pred             CCCCEEECCCCc--CCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceeeCCCCccc--ccCHHHhhhCccc
Confidence            367777775332  233443 344588888888884 3444433  35567888888888 6665  2223456678889


Q ss_pred             ceEEEeeeeCCCCCCCcEEe----cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE---EeeCCCC
Q 041388          206 EELSVTCELHDDTPPPNLII----SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF---VMHDLHS  278 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~l~i----~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~  278 (440)
                      +.|+|.+|..  +  ..+..    ..++|+.|.+. +|   .+.. ... ....++|++|.++++.....   .+.++++
T Consensus       163 ~~L~l~~~~~--l--~~i~~~~~~~l~~L~~L~L~-~n---~l~~-~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          163 RRLDLGELKR--L--SYISEGAFEGLSNLRYLNLA-MC---NLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             CEEECCCCTT--C--CEECTTTTTTCSSCCEEECT-TS---CCSS-CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CEeCCCCCCC--c--ceeCcchhhcccccCeecCC-CC---cCcc-ccc-cCCCcccCEEECCCCccCccChhhhccCcc
Confidence            9998887632  2  22211    24678888887 66   2321 111 12357888999887754433   3456788


Q ss_pred             eeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ec---ccccccc-c---ccccchhHHHHHHHhc
Q 041388          279 LKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LH---RNGGRTD-R---MASTANRAKKLTELGK  349 (440)
Q Consensus       279 L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f---~~L~~L~-~---~~~~~~~~~~l~~lL~  349 (440)
                      |+.+++.......  . .   ...+..+++++.|.|+.+.+..+.  .|   .+|+.|+ .   +. ......++...++
T Consensus       233 L~~L~L~~n~l~~--~-~---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~-CdC~l~~l~~~~~  305 (440)
T 3zyj_A          233 LQKLWMIQSQIQV--I-E---RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN-CNCDILWLSWWIK  305 (440)
T ss_dssp             CCEEECTTCCCCE--E-C---TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE-CSSTTHHHHHHHH
T ss_pred             CCEEECCCCceeE--E-C---hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc-CCCCchHHHHHHH
Confidence            8887775433211  0 0   234567889999999888777665  34   4555554 2   21 2344555655555


Q ss_pred             c
Q 041388          350 S  350 (440)
Q Consensus       350 ~  350 (440)
                      .
T Consensus       306 ~  306 (440)
T 3zyj_A          306 D  306 (440)
T ss_dssp             T
T ss_pred             h
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.14  E-value=1e-06  Score=76.73  Aligned_cols=78  Identities=15%  Similarity=0.053  Sum_probs=40.3

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      ++++|++....  ...+| .+..+++|++|++.++ .+..++....+++|++|+|. ..+. +.. ...++.+|.|+.|.
T Consensus        45 ~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~-~~~-~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           45 SLTYITLANIN--VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVT-SDK-IPNLSGLTSLTLLD  118 (197)
T ss_dssp             TCCEEEEESSC--CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCB-GGG-SCCCTTCTTCCEEE
T ss_pred             CccEEeccCCC--ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccC-ccc-ChhhcCCCCCCEEE
Confidence            56666664322  12344 3455666666666633 44444434556666666666 5544 211 12244566666666


Q ss_pred             Eeeee
Q 041388          210 VTCEL  214 (440)
Q Consensus       210 L~~c~  214 (440)
                      +.+|.
T Consensus       119 Ls~n~  123 (197)
T 4ezg_A          119 ISHSA  123 (197)
T ss_dssp             CCSSB
T ss_pred             ecCCc
Confidence            66653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.13  E-value=1.1e-06  Score=80.62  Aligned_cols=155  Identities=19%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             ccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccc
Q 041388          155 ACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLK  231 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~  231 (440)
                      ++|++|+|. ...+...+  ....+++|++|+|. ..+.  ..-..++..++.|++|.|.++....+. ...--..++|+
T Consensus        37 ~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~  112 (270)
T 2o6q_A           37 ADTKKLDLQ-SNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLA  112 (270)
T ss_dssp             TTCSEEECC-SSCCSCCCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCC
T ss_pred             CCCCEEECc-CCCCCeeCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCC
Confidence            455666665 22332222  23445566666665 4443  111233445566666666554321110 00001224555


Q ss_pred             eeEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCchhhhhhhccccc
Q 041388          232 TCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINS  308 (440)
Q Consensus       232 ~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~  308 (440)
                      .|.+. ++   .+.......--..++|++|.++++....+.   +.++++|+.+++.......   .+   ...+..+++
T Consensus       113 ~L~l~-~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~---~~~~~~l~~  182 (270)
T 2o6q_A          113 ELRLD-RN---QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR---VP---EGAFDKLTE  182 (270)
T ss_dssp             EEECC-SS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---CC---TTTTTTCTT
T ss_pred             EEECC-CC---ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE---eC---hhHhccCCC
Confidence            56555 43   111000000012355666666554332221   2345555555553322210   00   122345666


Q ss_pred             ccEEEEeccceeEee
Q 041388          309 CKYLYLSAGIMSSVE  323 (440)
Q Consensus       309 l~~L~l~~~~~~~~~  323 (440)
                      ++.|.++.+.+..+.
T Consensus       183 L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVP  197 (270)
T ss_dssp             CCEEECCSSCCSCCC
T ss_pred             cCEEECCCCcCCcCC
Confidence            777776665554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.13  E-value=5.1e-07  Score=82.96  Aligned_cols=154  Identities=16%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388          154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT  232 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~  232 (440)
                      .++|+.|.+. +..+...+....+++|+.|+|. ..+. +  + ..+..++.|++|.+.+|...... ...--..++|+.
T Consensus        40 l~~L~~L~l~-~~~i~~~~~l~~l~~L~~L~l~~n~l~-~--~-~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQIIAN-NSDIKSVQGIQYLPNVRYLALGGNKLH-D--I-SALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEECT-TSCCCCCTTGGGCTTCCEEECTTSCCC-C--C-GGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred             ccceeeeeeC-CCCcccccccccCCCCcEEECCCCCCC-C--c-hhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCE
Confidence            4566666666 4444444435556666666666 5554 2  1 13455666666666665332210 000012355666


Q ss_pred             eEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCchhhhhhhcccccc
Q 041388          233 CKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSC  309 (440)
Q Consensus       233 L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l  309 (440)
                      |.+. +|   .+.......--..++|++|.++++......   +.++++|+.+++.......   .+   ...+..++++
T Consensus       114 L~L~-~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~---~~~~~~l~~L  183 (272)
T 3rfs_A          114 LVLV-EN---QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS---LP---EGVFDKLTQL  183 (272)
T ss_dssp             EECT-TS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CC---TTTTTTCTTC
T ss_pred             EECC-CC---cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc---cC---HHHhcCCccC
Confidence            6665 44   121000000012456666666655433222   3445666666554433210   01   2234556666


Q ss_pred             cEEEEeccceeEee
Q 041388          310 KYLYLSAGIMSSVE  323 (440)
Q Consensus       310 ~~L~l~~~~~~~~~  323 (440)
                      +.|.++.+.+..+.
T Consensus       184 ~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          184 KDLRLYQNQLKSVP  197 (272)
T ss_dssp             CEEECCSSCCSCCC
T ss_pred             CEEECCCCcCCccC
Confidence            66666665554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.13  E-value=3.1e-07  Score=86.46  Aligned_cols=197  Identities=12%  Similarity=0.067  Sum_probs=111.2

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +++.|++..+.  ....+. +..+++|++|+|+ ...+...+   ..++|++|++. ..+. ...    ...++.|++|.
T Consensus        59 ~L~~L~Ls~n~--l~~~~~-~~~l~~L~~L~Ls-~n~l~~l~---~~~~L~~L~l~~n~l~-~~~----~~~~~~L~~L~  126 (317)
T 3o53_A           59 KLELLNLSSNV--LYETLD-LESLSTLRTLDLN-NNYVQELL---VGPSIETLHAANNNIS-RVS----CSRGQGKKNIY  126 (317)
T ss_dssp             TCCEEECTTSC--CEEEEE-ETTCTTCCEEECC-SSEEEEEE---ECTTCCEEECCSSCCS-EEE----ECCCSSCEEEE
T ss_pred             cCCEEECCCCc--CCcchh-hhhcCCCCEEECc-CCcccccc---CCCCcCEEECCCCccC-CcC----ccccCCCCEEE
Confidence            56666663221  111222 4456677777776 33333221   23667777776 5554 211    12367777777


Q ss_pred             EeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEE-----EecCCceEEEEeccccccEE-eeCCCCeeEE
Q 041388          210 VTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLT-----ITAPKLESLEIYSDLLGSFV-MHDLHSLKIV  282 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~-----~~~p~L~~L~~~~~~~~~~~-~~~~~~L~~~  282 (440)
                      +.++.....  ....+ ..++|+.|.+. ++   .+    ..+.     -..++|++|.++++...... ...+++|+.+
T Consensus       127 l~~N~l~~~--~~~~~~~l~~L~~L~Ls-~N---~l----~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L  196 (317)
T 3o53_A          127 LANNKITML--RDLDEGCRSRVQYLDLK-LN---EI----DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL  196 (317)
T ss_dssp             CCSSCCCSG--GGBCTGGGSSEEEEECT-TS---CC----CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEE
T ss_pred             CCCCCCCCc--cchhhhccCCCCEEECC-CC---CC----CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEE
Confidence            777643222  11122 23677777777 55   22    1111     13478888888876654432 2347788887


Q ss_pred             EEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee-ec---ccccccc-cccccchhHHHHHHHhccCCCcccc
Q 041388          283 KLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE-LH---RNGGRTD-RMASTANRAKKLTELGKSCPAQEQF  357 (440)
Q Consensus       283 ~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-~f---~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L  357 (440)
                      ++.......    .   ...+..+++++.|.++.+.+..++ .+   ++|+.|+ ...  ...-..+..++..+|+|+.|
T Consensus       197 ~Ls~N~l~~----l---~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N--~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          197 DLSSNKLAF----M---GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN--GFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             ECCSSCCCE----E---CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC--CCBHHHHHHHHHTCHHHHHH
T ss_pred             ECCCCcCCc----c---hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC--CccCcCHHHHHhccccceEE
Confidence            775543321    1   112567889999999988877766 34   4555554 332  33334677788889999988


Q ss_pred             c
Q 041388          358 G  358 (440)
Q Consensus       358 ~  358 (440)
                      .
T Consensus       268 ~  268 (317)
T 3o53_A          268 A  268 (317)
T ss_dssp             H
T ss_pred             E
Confidence            8

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.10  E-value=4.6e-07  Score=84.71  Aligned_cols=173  Identities=14%  Similarity=0.071  Sum_probs=78.6

Q ss_pred             CccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEec
Q 041388          148 PEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIIS  226 (440)
Q Consensus       148 p~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~  226 (440)
                      |..++.+++|++|+|+++.....++....+++|++|+|. ..+. .......+..++.|+.|.+.++...... ...--.
T Consensus        71 ~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~  148 (306)
T 2z66_A           71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNG  148 (306)
T ss_dssp             EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTT
T ss_pred             ccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccc-hhhccc
Confidence            334444566666666632222222223455666666666 5544 2211233455666666666654221110 000001


Q ss_pred             ccccceeEEEeeccccccccc-ccEEEEecCCceEEEEeccccccE---EeeCCCCeeEEEEEEeecccccCCchhhhhh
Q 041388          227 SATLKTCKLIVRSEDMLFREV-DYMLTITAPKLESLEIYSDLLGSF---VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQL  302 (440)
Q Consensus       227 ~~~L~~L~i~~~~~~~~~~~~-~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~  302 (440)
                      .++|+.|.+. ++   .+... .....-..++|++|.++++.....   .+.++++|+.+++.......   ..   ...
T Consensus       149 l~~L~~L~l~-~n---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~---~~~  218 (306)
T 2z66_A          149 LSSLEVLKMA-GN---SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---LD---TFP  218 (306)
T ss_dssp             CTTCCEEECT-TC---EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB---CC---SGG
T ss_pred             CcCCCEEECC-CC---ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc---cC---hhh
Confidence            2556666665 44   12100 000011245666666665543322   23445666666554332210   00   122


Q ss_pred             hcccccccEEEEeccceeEee-----ec-ccccccc
Q 041388          303 LAGINSCKYLYLSAGIMSSVE-----LH-RNGGRTD  332 (440)
Q Consensus       303 l~~~~~l~~L~l~~~~~~~~~-----~f-~~L~~L~  332 (440)
                      +..+++++.|.++.+.+....     .+ .+|+.|+
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            456778888888776555432     33 3566665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.10  E-value=8.3e-06  Score=87.23  Aligned_cols=81  Identities=12%  Similarity=0.001  Sum_probs=49.7

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccC--CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV--PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~--~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      +++.|++..+. -....|..+..+++|++|+|. ...+..  +.  ....+++|++|+|. ..+. .......++.++.|
T Consensus        74 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           74 NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSL  150 (844)
T ss_dssp             TCCEEECTTCC-CCEECTTSSCSCSSCCCEECT-TCCCSSCCSTTCCCSSCSSCCEEEEESCCCC-CCCCCGGGGTCSSC
T ss_pred             CCCEEECCCCc-CcccCHhHccCCcccCEeeCc-CCCCCcccccCccccccCCCCEEECCCCccc-ccccchhHhhCCCC
Confidence            56666664221 122345566667888888888 334432  22  14567788888888 7766 33344556778888


Q ss_pred             ceEEEeeee
Q 041388          206 EELSVTCEL  214 (440)
Q Consensus       206 e~L~L~~c~  214 (440)
                      ++|.|.++.
T Consensus       151 ~~L~Ls~N~  159 (844)
T 3j0a_A          151 KSIDFSSNQ  159 (844)
T ss_dssp             CEEEEESSC
T ss_pred             CEEECCCCc
Confidence            888887763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.09  E-value=2.5e-06  Score=87.60  Aligned_cols=69  Identities=13%  Similarity=0.030  Sum_probs=31.8

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +++.|++..+.  ...+|.   .+++|++|+|+ +..+...+.  .+++|++|+|. +.+. .  +   -...+.|+.|.
T Consensus        62 ~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls-~N~l~~lp~--~l~~L~~L~Ls~N~l~-~--l---~~~l~~L~~L~  127 (622)
T 3g06_A           62 HITTLVIPDNN--LTSLPA---LPPELRTLEVS-GNQLTSLPV--LPPGLLELSIFSNPLT-H--L---PALPSGLCKLW  127 (622)
T ss_dssp             TCSEEEECSCC--CSCCCC---CCTTCCEEEEC-SCCCSCCCC--CCTTCCEEEECSCCCC-C--C---CCCCTTCCEEE
T ss_pred             CCcEEEecCCC--CCCCCC---cCCCCCEEEcC-CCcCCcCCC--CCCCCCEEECcCCcCC-C--C---CCCCCCcCEEE
Confidence            55555554321  123333   24556666666 333333331  45566666666 5443 1  1   11345555555


Q ss_pred             Eeee
Q 041388          210 VTCE  213 (440)
Q Consensus       210 L~~c  213 (440)
                      +.++
T Consensus       128 L~~N  131 (622)
T 3g06_A          128 IFGN  131 (622)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.08  E-value=1.2e-06  Score=90.05  Aligned_cols=169  Identities=20%  Similarity=0.219  Sum_probs=97.4

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ++++|++..+  ....+|..+..+++|++|+|.+ ..+.. ++ ....+++|++|++. ..+. ...-...+..++.|++
T Consensus       279 ~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          279 GLQELDLTAT--HLSELPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRE  354 (606)
T ss_dssp             TCSEEECTTS--CCSCCCSSCCSCTTCCEEECTT-CCCSBGGGGCGGGCTTCSEEECCSCSSC-CBCCSSTTTTCTTCCE
T ss_pred             CCCEEeccCC--ccCCCChhhcccccCCEEECcc-CCcCcCchhhhhccCcCCEEECCCCCcc-cccchhhhhccCcCCE
Confidence            4555555322  2347888888899999999994 44433 22 46678999999999 7655 2222344678899999


Q ss_pred             EEEeeeeCCCCCCCcEE-----e-cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE----EeeCCC
Q 041388          208 LSVTCELHDDTPPPNLI-----I-SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF----VMHDLH  277 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l~-----i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~----~~~~~~  277 (440)
                      |++.++..     ..+.     + ..++|+.|.+. +|   .+........-..++|++|.++++.....    .+.+++
T Consensus       355 L~l~~n~l-----~~~~~~~~~~~~l~~L~~L~l~-~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          355 LDLSHDDI-----ETSDCCNLQLRNLSHLQSLNLS-YN---EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             EECCSSCC-----CEEEESTTTTTTCTTCCEEECC-SC---SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             EECCCCcc-----ccccCcchhcccCCCCCEEECC-CC---cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            99988643     2222     1 24788888887 66   22100000001257788888776543221    245667


Q ss_pred             CeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccc
Q 041388          278 SLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGI  318 (440)
Q Consensus       278 ~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~  318 (440)
                      +|+.+++.......   ..   ...+..+++++.|.++.+.
T Consensus       426 ~L~~L~l~~n~l~~---~~---~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          426 LLKVLNLSHSLLDI---SS---EQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             TCCEEECTTCCCBT---TC---TTTTTTCTTCCEEECTTCB
T ss_pred             cCCEEECCCCccCC---cC---HHHHhCCCCCCEEECCCCC
Confidence            77777765443211   00   1233455566666665543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.06  E-value=8.3e-07  Score=93.99  Aligned_cols=210  Identities=14%  Similarity=0.006  Sum_probs=126.2

Q ss_pred             CCcEEEEEEEccCceeecCccc-cccccccEEEecCCccccC-CC-C---cccccccceEEEE-EEeCCCcchhhhhccC
Q 041388          130 REVGEIQLYLGQQSRVELPEAI-YSAACLKVLTLDSDFSIQV-PS-S---GTCFPCVKILSVR-LENPNKSVTENLFCSC  202 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~l~~-~~-~---~~~~~~L~~L~L~-~~~~~~~~l~~lls~c  202 (440)
                      .++++|++..+. -....|..+ ..+++|++|+|++ ..+.. .+ .   ...+++|++|+|. ..+.+...+    ..|
T Consensus       126 ~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l  199 (768)
T 3rgz_A          126 SGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSA-NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRC  199 (768)
T ss_dssp             TTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCS-SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTC
T ss_pred             CCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCC-CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccC
Confidence            478888885432 123445544 5689999999994 44433 22 1   3568899999999 877633332    689


Q ss_pred             CCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccc-cEEeeCCCCeeE
Q 041388          203 PSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLG-SFVMHDLHSLKI  281 (440)
Q Consensus       203 p~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~-~~~~~~~~~L~~  281 (440)
                      +.|++|+|.+|...... .. --..++|+.|.+. +|   .+........-..++|++|.++++... .....++++|+.
T Consensus       200 ~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls-~n---~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~  273 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDIS-GN---KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY  273 (768)
T ss_dssp             TTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECC-SS---CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred             CcCCEEECcCCcCCCCC-cc-cccCCCCCEEECc-CC---cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCE
Confidence            99999999998543321 11 1134889999998 76   231100111124689999999876532 222337888998


Q ss_pred             EEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecc---cccccc-cccccchhHHHHHHHhccCCCcc
Q 041388          282 VKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHR---NGGRTD-RMASTANRAKKLTELGKSCPAQE  355 (440)
Q Consensus       282 ~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~---~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~  355 (440)
                      +++.......  ..+   ..+...+++++.|.++.+.+....  .|.   +|+.|+ ..+  ......-...+..+++|+
T Consensus       274 L~L~~n~l~~--~ip---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          274 LSLAENKFTG--EIP---DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN--NFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             EECCSSEEEE--SCC---CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS--EEEEECCHHHHTTCTTCC
T ss_pred             EECcCCccCC--ccC---HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC--cccCcCCHHHHhcCCCCC
Confidence            8886544321  111   222334589999999888766432  344   445444 222  111111123466789999


Q ss_pred             ccc
Q 041388          356 QFG  358 (440)
Q Consensus       356 ~L~  358 (440)
                      .|.
T Consensus       347 ~L~  349 (768)
T 3rgz_A          347 VLD  349 (768)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            988

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.04  E-value=1.4e-05  Score=80.44  Aligned_cols=102  Identities=16%  Similarity=0.064  Sum_probs=51.1

Q ss_pred             CCcEEEEEEEccCceeecC-ccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          130 REVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      ..+++|++..+.  ...++ ..+..+++|++|+|+++..... +.....+++|++|+|+ ..+. .  +...  .++.|+
T Consensus        21 ~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~--lp~~--~l~~L~   93 (520)
T 2z7x_B           21 QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K--ISCH--PTVNLK   93 (520)
T ss_dssp             TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-E--EECC--CCCCCS
T ss_pred             ccccEEECCCCc--ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-e--cCcc--ccCCcc
Confidence            356666664322  22333 2344567777777773322222 1234556777777777 5554 1  2111  567777


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      +|+|.++....+.....--..++|+.|.+. ++
T Consensus        94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~-~n  125 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEFGNMSQLKFLGLS-TT  125 (520)
T ss_dssp             EEECCSSCCSSCCCCGGGGGCTTCCEEEEE-ES
T ss_pred             EEeccCCccccccchhhhccCCcceEEEec-Cc
Confidence            777777643221000001123567777776 55

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=9.6e-07  Score=94.00  Aligned_cols=257  Identities=8%  Similarity=0.013  Sum_probs=138.5

Q ss_pred             CcEEEEEEEccCceeecCc--cccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCC-cc
Q 041388          131 EVGEIQLYLGQQSRVELPE--AIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPS-LE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~-Le  206 (440)
                      +++.|++..+.  ...+|.  .+..+++|+.|+|++ ..+...|....+++|+.|+|. ..+.   .+..-+..++. |+
T Consensus       549 ~L~~L~Ls~N~--L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          549 KIQIFYMGYNN--LEEFPASASLQKMVKLGLLDCVH-NKVRHLEAFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TCCEEECCSSC--CCBCCCHHHHTTCTTCCEEECTT-SCCCBCCCCCTTSEESEEECCSSCCS---CCCTTSCEECTTCC
T ss_pred             CccEEEeeCCc--CCccCChhhhhcCCCCCEEECCC-CCcccchhhcCCCcceEEECcCCccc---cchHHHhhccccCC
Confidence            67777775433  227777  777788888888884 333343346678888888888 7665   23344667788 88


Q ss_pred             eEEEeeeeCCCCCCCcEE-ecccccceeEEEeecccccccccccEE-----EEecCCceEEEEeccccccEE---eeCCC
Q 041388          207 ELSVTCELHDDTPPPNLI-ISSATLKTCKLIVRSEDMLFREVDYML-----TITAPKLESLEIYSDLLGSFV---MHDLH  277 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~-i~~~~L~~L~i~~~~~~~~~~~~~~~l-----~~~~p~L~~L~~~~~~~~~~~---~~~~~  277 (440)
                      .|.|.++....++ ..+. ...++|+.|.+. +|   .+......+     ....++|+.|.++++....+.   +.+++
T Consensus       623 ~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls-~N---~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~  697 (876)
T 4ecn_A          623 GLGFSHNKLKYIP-NIFNAKSVYVMGSVDFS-YN---KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS  697 (876)
T ss_dssp             EEECCSSCCCSCC-SCCCTTCSSCEEEEECC-SS---CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred             EEECcCCCCCcCc-hhhhccccCCCCEEECc-CC---cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence            8888887543331 1111 112458888887 66   221100111     113457888888776554332   23677


Q ss_pred             CeeEEEEEEeecccccCCchhh-hhhhcccccccEEEEeccceeEee-ec-----ccccccc-cccccchhHHHHHHHhc
Q 041388          278 SLKIVKLDIMHAEWAQVDPYRA-IQLLAGINSCKYLYLSAGIMSSVE-LH-----RNGGRTD-RMASTANRAKKLTELGK  349 (440)
Q Consensus       278 ~L~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~-~f-----~~L~~L~-~~~~~~~~~~~l~~lL~  349 (440)
                      +|+.+++.......-....+.. ...+..+++++.|.|+.+.+..++ .+     ++|+.|+ ..+  .  ...+..-+.
T Consensus       698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N--~--L~~lp~~l~  773 (876)
T 4ecn_A          698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN--C--FSSFPTQPL  773 (876)
T ss_dssp             CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS--C--CSSCCCGGG
T ss_pred             CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC--C--CCccchhhh
Confidence            8888777554332000000000 111234557888888777666554 22     3444444 222  1  112333455


Q ss_pred             cCCCccccc-cccC----C---CCCccc--cccceeEEEEEeeec--CcchHHHHHHHHhhccccceEEEEeec
Q 041388          350 SCPAQEQFG-WLES----D---FDVPHC--LVHTVKNIEIKGVQG--DEDERPLLKYLLQFAAAMEKMLMWAKA  411 (440)
Q Consensus       350 ~~p~L~~L~-~~~~----~---~~~~~c--~~~~L~~v~i~~~~~--~~~~~~~~~~ll~~a~~L~~m~i~~~~  411 (440)
                      .+++|+.|. ..+.    .   ...|..  ...+|+.+.+.+..-  .+..+         .+.|+.+.+...+
T Consensus       774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l---------~~~L~~LdLs~N~  838 (876)
T 4ecn_A          774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---------TPQLYILDIADNP  838 (876)
T ss_dssp             GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC---------CSSSCEEECCSCT
T ss_pred             cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh---------cCCCCEEECCCCC
Confidence            677888776 3211    1   122322  245677777764331  11111         1477777776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=1.9e-06  Score=82.42  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             cccccceEEEE-EEeC-------CCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccc-
Q 041388          176 CFPCVKILSVR-LENP-------NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFRE-  246 (440)
Q Consensus       176 ~~~~L~~L~L~-~~~~-------~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~-  246 (440)
                      .|++|+.|.+. +...       +..++..++..+|.|++|.|.++.+..+  ..  +..++|++|.+. .|   ++.. 
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l--~~--~~~~~L~~L~L~-~~---~l~~~  208 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI--GK--KPRPNLKSLEII-SG---GLPDS  208 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC--CS--CBCTTCSEEEEE-CS---BCCHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee--cc--ccCCCCcEEEEe-cC---CCChH
Confidence            56777777766 4321       1235778899999999999998743222  22  457899999998 66   2311 


Q ss_pred             cccEEE-EecCCceEEEEe
Q 041388          247 VDYMLT-ITAPKLESLEIY  264 (440)
Q Consensus       247 ~~~~l~-~~~p~L~~L~~~  264 (440)
                      ....+. ...|+|++|.++
T Consensus       209 ~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHHHccCCCCcEEEEe
Confidence            011121 257999999985

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.02  E-value=2e-06  Score=78.73  Aligned_cols=36  Identities=28%  Similarity=0.709  Sum_probs=34.0

Q ss_pred             ccCCCCChHHHHHHhcCCCchhhh-hhhccccchHHH
Q 041388           25 DRISSLPDSVLCHILSYIPTKHVV-ATSVIAKRWKNV   60 (440)
Q Consensus        25 D~is~LPd~lL~~Ils~L~~~d~~-rts~lsrrWr~l   60 (440)
                      ..+..||||||..||++||.++++ +++.|||+||.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.99  E-value=4.2e-06  Score=79.04  Aligned_cols=124  Identities=14%  Similarity=0.120  Sum_probs=65.3

Q ss_pred             CcEEEEEEEccCceeec-CccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          131 EVGEIQLYLGQQSRVEL-PEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      +++.|++..+.  ...+ |..+..+++|++|+|. ...+...+ ...+++|++|++. ..+.  ......+..++.|+.|
T Consensus        77 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls-~n~l~~l~-~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A           77 NLHTLILINNK--ISKISPGAFAPLVKLERLYLS-KNQLKELP-EKMPKTLQELRVHENEIT--KVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             TCCEEECCSSC--CCCBCTTTTTTCTTCCEEECC-SSCCSBCC-SSCCTTCCEEECCSSCCC--BBCHHHHTTCTTCCEE
T ss_pred             CCCEEECCCCc--CCeeCHHHhcCCCCCCEEECC-CCcCCccC-hhhcccccEEECCCCccc--ccCHhHhcCCccccEE
Confidence            67777664321  1223 4555567778888887 33444433 2234678888777 6655  2234456677888888


Q ss_pred             EEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEEecCCceEEEEeccc
Q 041388          209 SVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDL  267 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~  267 (440)
                      .+.++.........-.+ ..++|+.|.+. ++   .+......+   .++|++|.++++.
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-~n---~l~~l~~~~---~~~L~~L~l~~n~  203 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIA-DT---NITTIPQGL---PPSLTELHLDGNK  203 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECC-SS---CCCSCCSSC---CTTCSEEECTTSC
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECC-CC---ccccCCccc---cccCCEEECCCCc
Confidence            88776331100000011 23677777776 55   221100111   2677777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.99  E-value=2.4e-05  Score=83.60  Aligned_cols=84  Identities=13%  Similarity=0.063  Sum_probs=41.6

Q ss_pred             ccccccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-cc
Q 041388          151 IYSAACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SS  227 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~  227 (440)
                      +..+++|+.|+|.++.....+ ....++++|++|+|. ..+.  ......+..+|.|+.|++.++....+  ..-.+ ..
T Consensus       286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l  361 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG--ELYSSNFYGLPKVAYIDLQKNHIAII--QDQTFKFL  361 (844)
T ss_dssp             SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS--CCCSCSCSSCTTCCEEECCSCCCCCC--CSSCSCSC
T ss_pred             hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC--ccCHHHhcCCCCCCEEECCCCCCCcc--ChhhhcCC
Confidence            334666777776632222222 234456667777776 5554  11223345566666666666533222  11011 23


Q ss_pred             cccceeEEEeec
Q 041388          228 ATLKTCKLIVRS  239 (440)
Q Consensus       228 ~~L~~L~i~~~~  239 (440)
                      ++|+.|.+. ++
T Consensus       362 ~~L~~L~Ls-~N  372 (844)
T 3j0a_A          362 EKLQTLDLR-DN  372 (844)
T ss_dssp             CCCCEEEEE-TC
T ss_pred             CCCCEEECC-CC
Confidence            566666666 54

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.99  E-value=9.7e-06  Score=82.10  Aligned_cols=212  Identities=14%  Similarity=0.109  Sum_probs=123.0

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .++.|++.... -....|..+..+++|++|+|+++.....++ ....+++|++|+|. ..+. + .....+..++.|++|
T Consensus        27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~-~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-S-LSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-S-CCHHHHTTCTTCCEE
T ss_pred             CccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-c-cCHHHhccCCCCcEE
Confidence            67777765332 112234455668899999998443222232 35678889999998 7776 2 234456788999999


Q ss_pred             EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE----EecCCceEEEEeccccccE---EeeCCCCeeE
Q 041388          209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT----ITAPKLESLEIYSDLLGSF---VMHDLHSLKI  281 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~----~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~  281 (440)
                      ++.++..........--..++|+.|.+. +|.   +   ...+.    -..++|++|.++++.....   .+.++++|+.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~-~n~---~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  176 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIG-NVE---T---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH  176 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESS---S---CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             ECCCCcccccchhhhhhccCCccEEECC-CCc---c---ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence            9988753221001111134788899888 662   1   11111    1257888888887654332   2445677777


Q ss_pred             EEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--------ecccccccc-ccc-ccchhHHHHHHHhccC
Q 041388          282 VKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--------LHRNGGRTD-RMA-STANRAKKLTELGKSC  351 (440)
Q Consensus       282 ~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--------~f~~L~~L~-~~~-~~~~~~~~l~~lL~~~  351 (440)
                      +++......    ...  ..+...+++++.|.++.+.+....        .+.+|+.|+ ... -.......+...+..+
T Consensus       177 L~l~~n~~~----~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (549)
T 2z81_A          177 LTLHLSESA----FLL--EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI  250 (549)
T ss_dssp             EEEECSBST----THH--HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred             EecccCccc----ccc--hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence            777554321    110  233456788999998876554321        355666666 322 0122334555666777


Q ss_pred             CCccccc
Q 041388          352 PAQEQFG  358 (440)
Q Consensus       352 p~L~~L~  358 (440)
                      ++|+.|.
T Consensus       251 ~~L~~l~  257 (549)
T 2z81_A          251 LELSEVE  257 (549)
T ss_dssp             TTCCEEE
T ss_pred             ccccccc
Confidence            7777776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.97  E-value=2.8e-06  Score=80.25  Aligned_cols=196  Identities=14%  Similarity=0.128  Sum_probs=119.6

Q ss_pred             CceeeEEEEeeCCCC--hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--Ccccc
Q 041388          102 AKIGKFSLYCSRPTN--LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCF  177 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~--~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~  177 (440)
                      +.++.+.+....-..  ...+    .  .-.+++.|++....  ...+|..++  ++|++|++. ...+...+  ....+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~----~--~l~~L~~L~Ls~n~--l~~l~~~~~--~~L~~L~l~-~n~l~~~~~~~~~~l  144 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAF----A--PLVKLERLYLSKNQ--LKELPEKMP--KTLQELRVH-ENEITKVRKSVFNGL  144 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTT----T--TCTTCCEEECCSSC--CSBCCSSCC--TTCCEEECC-SSCCCBBCHHHHTTC
T ss_pred             CCCCEEECCCCcCCeeCHHHh----c--CCCCCCEEECCCCc--CCccChhhc--ccccEEECC-CCcccccCHhHhcCC
Confidence            457887776543222  1111    1  12378888885432  335666555  799999999 44444333  24578


Q ss_pred             cccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecC
Q 041388          178 PCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAP  256 (440)
Q Consensus       178 ~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p  256 (440)
                      ++|+.|+|. ..+.........+..++.|+.|.+.++....++ ..   ..++|+.|.+. ++   .+.......--..+
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~---~~~~L~~L~l~-~n---~l~~~~~~~~~~l~  216 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QG---LPPSLTELHLD-GN---KITKVDAASLKGLN  216 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SS---CCTTCSEEECT-TS---CCCEECTGGGTTCT
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-cc---ccccCCEEECC-CC---cCCccCHHHhcCCC
Confidence            999999999 777522334456788999999999997543331 11   12789999998 66   22100000011358


Q ss_pred             CceEEEEeccccccE---EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee
Q 041388          257 KLESLEIYSDLLGSF---VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE  323 (440)
Q Consensus       257 ~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~  323 (440)
                      +|++|.++++.....   .+.++++|+.+++......    ..   ...+..+++++.|.++.+.+..+.
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l---p~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV----KV---PGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS----SC---CTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc----cC---ChhhccCCCcCEEECCCCcCCccC
Confidence            899999988754433   2456778888777654332    11   123466778888888877665544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.97  E-value=1e-06  Score=91.13  Aligned_cols=217  Identities=11%  Similarity=0.034  Sum_probs=117.4

Q ss_pred             CCcEEEEEEEccCceeecCc--cccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCC-c
Q 041388          130 REVGEIQLYLGQQSRVELPE--AIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPS-L  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~-L  205 (440)
                      .++++|++..+.  ...+|.  .+..+++|++|+|.++......|....+++|++|.|. ..+.   .+..-+..++. |
T Consensus       305 ~~L~~L~L~~n~--l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L  379 (636)
T 4eco_A          305 EKIQIIYIGYNN--LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT---EIPANFCGFTEQV  379 (636)
T ss_dssp             GTCCEEECCSSC--CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE---ECCTTSEEECTTC
T ss_pred             CCCCEEECCCCc--CCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc---cccHhhhhhcccC
Confidence            478888875433  227787  7777888999999844333133346677888988888 6655   23334677888 9


Q ss_pred             ceEEEeeeeCCCCCCCcEEe-cccccceeEEEeeccccccccc-ccEE------EEecCCceEEEEeccccccEE---ee
Q 041388          206 EELSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREV-DYML------TITAPKLESLEIYSDLLGSFV---MH  274 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~-~~~l------~~~~p~L~~L~~~~~~~~~~~---~~  274 (440)
                      +.|.+.++....++ ..+.. ..++|+.|.+. +|   .+... ...+      ....++|++|.++++....+.   +.
T Consensus       380 ~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls-~N---~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~  454 (636)
T 4eco_A          380 ENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFS-YN---EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS  454 (636)
T ss_dssp             CEEECCSSCCSSCC-SCCCTTCSSCEEEEECC-SS---CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred             cEEEccCCcCcccc-hhhhhcccCccCEEECc-CC---cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence            99999887543331 11111 12368888887 66   22110 0111      113567888888776544332   23


Q ss_pred             CCCCeeEEEEEEeecccccCCchhh-hhhhcccccccEEEEeccceeEee-ecc--cccccc--cccccchhHHHHHHHh
Q 041388          275 DLHSLKIVKLDIMHAEWAQVDPYRA-IQLLAGINSCKYLYLSAGIMSSVE-LHR--NGGRTD--RMASTANRAKKLTELG  348 (440)
Q Consensus       275 ~~~~L~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~-~f~--~L~~L~--~~~~~~~~~~~l~~lL  348 (440)
                      .+++|+.+++.......-....+.. ...++.+++++.|.++.+.+..++ .+.  ++++|+  .+.  ......+..-+
T Consensus       455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls--~N~l~~ip~~~  532 (636)
T 4eco_A          455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS--YNSFSKFPTQP  532 (636)
T ss_dssp             TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECC--SSCCSSCCCGG
T ss_pred             cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECC--CCCCCCcChhh
Confidence            4677877777554332100000000 011223347778887777666554 222  333333  222  11111233344


Q ss_pred             ccCCCccccc
Q 041388          349 KSCPAQEQFG  358 (440)
Q Consensus       349 ~~~p~L~~L~  358 (440)
                      ..+++|+.|.
T Consensus       533 ~~l~~L~~L~  542 (636)
T 4eco_A          533 LNSSTLKGFG  542 (636)
T ss_dssp             GGCSSCCEEE
T ss_pred             hcCCCCCEEE
Confidence            5677777776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.96  E-value=1.9e-06  Score=79.97  Aligned_cols=164  Identities=15%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      .++.|++..+.  ...+| .+..+++|++|+|. ...+...+....+++|+.|+|. ..+. +  +.. +..++.|+.|+
T Consensus        47 ~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~-~n~l~~~~~l~~l~~L~~L~l~~n~l~-~--~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           47 SIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLN-GNKLTDIKPLANLKNLGWLFLDENKVK-D--LSS-LKDLKKLKSLS  118 (291)
T ss_dssp             TCCEEECTTSC--CCCCT-TGGGCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCC-C--GGG-GTTCTTCCEEE
T ss_pred             cccEEEccCCC--cccCh-hHhcCCCCCEEEcc-CCccCCCcccccCCCCCEEECCCCcCC-C--Chh-hccCCCCCEEE
Confidence            67777664322  22333 35568888888888 4444443336678888888888 7766 2  222 67788888888


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEee
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMH  288 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~  288 (440)
                      +.+|....+  ..+ -..++|+.|.+. +|   .+.. . ...-..++|+.|.++++..... .+..+++|+.+++....
T Consensus       119 L~~n~i~~~--~~l-~~l~~L~~L~l~-~n---~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          119 LEHNGISDI--NGL-VHLPQLESLYLG-NN---KITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CTTSCCCCC--GGG-GGCTTCCEEECC-SS---CCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCCCcCCCC--hhh-cCCCCCCEEEcc-CC---cCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence            888743222  111 124678888887 66   2211 1 0011357788888776543321 24556666666664433


Q ss_pred             cccccCCchhhhhhhcccccccEEEEeccce
Q 041388          289 AEWAQVDPYRAIQLLAGINSCKYLYLSAGIM  319 (440)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~  319 (440)
                      ...        ...+..+++++.|.++.+.+
T Consensus       190 i~~--------l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          190 ISD--------LRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCB--------CGGGTTCTTCSEEEEEEEEE
T ss_pred             CCC--------ChhhccCCCCCEEECcCCcc
Confidence            211        12245666677777665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.95  E-value=9.8e-06  Score=83.18  Aligned_cols=241  Identities=13%  Similarity=0.031  Sum_probs=131.8

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +++.|++...  ....+|..++  ++|++|+|. +..+...+.  .+++|++|+|+ +.+. .  +..   ..+.|++|+
T Consensus        41 ~l~~L~ls~n--~L~~lp~~l~--~~L~~L~L~-~N~l~~lp~--~l~~L~~L~Ls~N~l~-~--lp~---~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGES--GLTTLPDCLP--AHITTLVIP-DNNLTSLPA--LPPELRTLEVSGNQLT-S--LPV---LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSS--CCSCCCSCCC--TTCSEEEEC-SCCCSCCCC--CCTTCCEEEECSCCCS-C--CCC---CCTTCCEEE
T ss_pred             CCcEEEecCC--CcCccChhhC--CCCcEEEec-CCCCCCCCC--cCCCCCEEEcCCCcCC-c--CCC---CCCCCCEEE
Confidence            6777777532  2346777665  799999999 555655552  67899999999 8776 2  222   679999999


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEeec
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHA  289 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~  289 (440)
                      |.++....+  .   ...++|+.|.+. +|   .+.    .+....|+|++|.++++....+. ...++|+.+++.....
T Consensus       108 Ls~N~l~~l--~---~~l~~L~~L~L~-~N---~l~----~lp~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          108 IFSNPLTHL--P---ALPSGLCKLWIF-GN---QLT----SLPVLPPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQL  173 (622)
T ss_dssp             ECSCCCCCC--C---CCCTTCCEEECC-SS---CCS----CCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCC
T ss_pred             CcCCcCCCC--C---CCCCCcCEEECC-CC---CCC----cCCCCCCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCC
Confidence            999754333  2   245778888887 66   231    12223478888888776543321 2334555554433222


Q ss_pred             ccccCCc--------hhh--hhhhcccccccEEEEeccceeEee-ecccccccc-cccccchhHHHHHHHhccCCCcccc
Q 041388          290 EWAQVDP--------YRA--IQLLAGINSCKYLYLSAGIMSSVE-LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQF  357 (440)
Q Consensus       290 ~~~~~~~--------~~~--~~~l~~~~~l~~L~l~~~~~~~~~-~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L  357 (440)
                      ..-....        ..|  ..+...+++++.|.++.+.+..++ .+++|+.|. ..+  ...  .+.   ..+++|+.|
T Consensus       174 ~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--~L~--~lp---~~l~~L~~L  246 (622)
T 3g06_A          174 TSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN--RLT--SLP---VLPSELKEL  246 (622)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS--CCS--CCC---CCCTTCCEE
T ss_pred             CCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC--ccC--cCC---CCCCcCcEE
Confidence            1000000        000  111123345555555544444333 334555555 322  111  111   455777777


Q ss_pred             c-cccCCCCCccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEeec
Q 041388          358 G-WLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKA  411 (440)
Q Consensus       358 ~-~~~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~  411 (440)
                      . ..+.-...|. ...+|+.+.+.+..-.  .+   ..-+.+.++|+.+.+....
T Consensus       247 ~Ls~N~L~~lp~-~~~~L~~L~Ls~N~L~--~l---p~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          247 MVSGNRLTSLPM-LPSGLLSLSVYRNQLT--RL---PESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             ECCSSCCSCCCC-CCTTCCEEECCSSCCC--SC---CGGGGGSCTTCEEECCSCC
T ss_pred             ECCCCCCCcCCc-ccccCcEEeCCCCCCC--cC---CHHHhhccccCEEEecCCC
Confidence            6 3221123344 4577888888643311  11   1124577889999886644

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.95  E-value=1.3e-06  Score=80.34  Aligned_cols=37  Identities=22%  Similarity=0.367  Sum_probs=16.2

Q ss_pred             ccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          175 TCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       175 ~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ..+++|++|+|. ..+.  ......+..++.|++|+|.++
T Consensus        49 ~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             TTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTC
T ss_pred             ccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCC
Confidence            344555555555 4333  111122344555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.94  E-value=1.1e-06  Score=81.60  Aligned_cols=13  Identities=23%  Similarity=0.439  Sum_probs=6.4

Q ss_pred             cCCCcceEEEeee
Q 041388          201 SCPSLEELSVTCE  213 (440)
Q Consensus       201 ~cp~Le~L~L~~c  213 (440)
                      .++.|+.|+|.++
T Consensus        75 ~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           75 TLPVLGTLDLSHN   87 (290)
T ss_dssp             CCTTCCEEECCSS
T ss_pred             CCCcCCEEECCCC
Confidence            4455555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.94  E-value=2.8e-07  Score=89.32  Aligned_cols=17  Identities=29%  Similarity=0.184  Sum_probs=8.8

Q ss_pred             hcccccccEEEEeccce
Q 041388          303 LAGINSCKYLYLSAGIM  319 (440)
Q Consensus       303 l~~~~~l~~L~l~~~~~  319 (440)
                      +..+++++.|.|+.+.+
T Consensus       212 l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             GGGCTTCCEEECCSSCC
T ss_pred             hhcCCCccEEECcCCCC
Confidence            34555555555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.94  E-value=3.4e-06  Score=73.32  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=24.4

Q ss_pred             cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +++|++|++. +..+...+....+++|++|++. +.+. +  + ..++.+|.|++|.+.++
T Consensus        43 l~~L~~L~l~-~n~i~~l~~l~~l~~L~~L~l~~n~~~-~--~-~~l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           43 MNSLTYITLA-NINVTDLTGIEYAHNIKDLTINNIHAT-N--Y-NPISGLSNLERLRIMGK   98 (197)
T ss_dssp             HHTCCEEEEE-SSCCSCCTTGGGCTTCSEEEEESCCCS-C--C-GGGTTCTTCCEEEEECT
T ss_pred             cCCccEEecc-CCCccChHHHhcCCCCCEEEccCCCCC-c--c-hhhhcCCCCCEEEeECC
Confidence            4455555555 3333332224445555555555 4332 1  1 12344555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=1.7e-06  Score=92.11  Aligned_cols=262  Identities=14%  Similarity=0.070  Sum_probs=152.3

Q ss_pred             CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccc-c
Q 041388          102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPC-V  180 (440)
Q Consensus       102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~-L  180 (440)
                      +.++.+.+....-..   +..|-......+++.|++..+.  ...+| .+..+++|+.|+|+++.....|.....+++ |
T Consensus       548 ~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls~N~--l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L  621 (876)
T 4ecn_A          548 PKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNK--VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV  621 (876)
T ss_dssp             TTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECTTSC--CCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTC
T ss_pred             CCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECCCCC--cccch-hhcCCCcceEEECcCCccccchHHHhhccccC
Confidence            457777776543221   2121011122478888885432  23777 667799999999995433333445667888 9


Q ss_pred             ceEEEE-EEeCCCcchhhhhccC--CCcceEEEeeeeCCCCCCCcE-----EecccccceeEEEeecccccccccccEEE
Q 041388          181 KILSVR-LENPNKSVTENLFCSC--PSLEELSVTCELHDDTPPPNL-----IISSATLKTCKLIVRSEDMLFREVDYMLT  252 (440)
Q Consensus       181 ~~L~L~-~~~~~~~~l~~lls~c--p~Le~L~L~~c~~~~~~~~~l-----~i~~~~L~~L~i~~~~~~~~~~~~~~~l~  252 (440)
                      +.|+|. ..+. .  +...+...  +.|+.|.|.++...+.. ..+     ....++|+.|.+. +|   .+......+.
T Consensus       622 ~~L~Ls~N~L~-~--lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls-~N---~L~~lp~~~~  693 (876)
T 4ecn_A          622 EGLGFSHNKLK-Y--IPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLS-YN---EIQKFPTELF  693 (876)
T ss_dssp             CEEECCSSCCC-S--CCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECC-SS---CCCSCCHHHH
T ss_pred             CEEECcCCCCC-c--CchhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEcc-CC---cCCccCHHHH
Confidence            999999 7765 2  33444444  45999999998542210 111     1133589999998 76   2321011111


Q ss_pred             EecCCceEEEEeccccccEEe----------eCCCCeeEEEEEEeecccccCCchhhhhhh-cccccccEEEEeccceeE
Q 041388          253 ITAPKLESLEIYSDLLGSFVM----------HDLHSLKIVKLDIMHAEWAQVDPYRAIQLL-AGINSCKYLYLSAGIMSS  321 (440)
Q Consensus       253 ~~~p~L~~L~~~~~~~~~~~~----------~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~l~~~~~~~  321 (440)
                      -..++|+.|.++++....+..          .++++|+.+++......   ..+   ..+. ..+++++.|.|+.+.+..
T Consensus       694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---~lp---~~l~~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---SLS---DDFRATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC---CCC---GGGSTTTCTTCCEEECCSSCCSS
T ss_pred             ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc---cch---HHhhhccCCCcCEEEeCCCCCCc
Confidence            146899999998875443221          12238888888655432   111   2222 478999999999887766


Q ss_pred             ee----ecccccccc-cccc---cchhHHHHHHHhccCCCccccc-cccCCCCCccccccceeEEEEEeee
Q 041388          322 VE----LHRNGGRTD-RMAS---TANRAKKLTELGKSCPAQEQFG-WLESDFDVPHCLVHTVKNIEIKGVQ  383 (440)
Q Consensus       322 ~~----~f~~L~~L~-~~~~---~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c~~~~L~~v~i~~~~  383 (440)
                      ++    .+++|+.|. ....   ...-...++.-+..+|+|+.|. ..+.-...|..+..+|+.+.+.+-.
T Consensus       768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNP  838 (876)
T ss_dssp             CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCT
T ss_pred             cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCC
Confidence            55    344555554 3210   0111122344567799999998 4332244555556789999987543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.92  E-value=5.5e-06  Score=75.87  Aligned_cols=173  Identities=20%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      ++++|++....  ...+|. .+..+++|++|+|. ...+...+  .+..+++|++|+|. ..+. . .-...+..++.|+
T Consensus        38 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~  112 (270)
T 2o6q_A           38 DTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDNKLQ-A-LPIGVFDQLVNLA  112 (270)
T ss_dssp             TCSEEECCSSC--CSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSSCTTCCEEECCSSCCC-C-CCTTTTTTCSSCC
T ss_pred             CCCEEECcCCC--CCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcCCCCCCEEECCCCcCC-c-CCHhHcccccCCC
Confidence            45555553221  223443 33447777777777 33333322  13456777777777 6554 1 1224456677777


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEE
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVK  283 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~  283 (440)
                      .|.+.++....+. ...--..++|+.|.+. ++   .+.......--..++|++|.++++....+.   +.++++|+.++
T Consensus       113 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls-~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  187 (270)
T 2o6q_A          113 ELRLDRNQLKSLP-PRVFDSLTKLTYLSLG-YN---ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK  187 (270)
T ss_dssp             EEECCSSCCCCCC-TTTTTTCTTCCEEECC-SS---CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCccCeeC-HHHhCcCcCCCEEECC-CC---cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence            7777776432220 0000123677777776 55   221100000112477778877765443322   44567777777


Q ss_pred             EEEeecccccCCchhhhhhhcccccccEEEEeccce
Q 041388          284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIM  319 (440)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~  319 (440)
                      +......   ..+   ...+..+++++.|.++.+.+
T Consensus       188 L~~N~l~---~~~---~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          188 LDNNQLK---RVP---EGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCSSCCS---CCC---TTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCcCC---cCC---HHHhccccCCCEEEecCCCe
Confidence            7544321   111   23456788899999876643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.92  E-value=1.4e-05  Score=71.67  Aligned_cols=60  Identities=15%  Similarity=0.108  Sum_probs=25.5

Q ss_pred             ccccccEEEecCCccccC-CC-CcccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeeee
Q 041388          153 SAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      .+++|++|+|.++..+.. ++ .+..+++|++|+|. +. +.  ..-...+.+++.|+.|.+.++.
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTG  116 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC--EECTTSEECCTTCCEEEEEEEC
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCC
Confidence            355555555553311211 11 23345555555555 21 11  1111233445555555555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.91  E-value=3.8e-06  Score=85.09  Aligned_cols=172  Identities=16%  Similarity=0.148  Sum_probs=101.4

Q ss_pred             CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccC-----CCCcccccccceEEEE-EEeCCCcchhhhhccCC
Q 041388          131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQV-----PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCP  203 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~-----~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp  203 (440)
                      .++.+++..+.  ...+|..++ .+++|++|+|+++ .+..     +.....+++|++|+|. +.+.+-......+..++
T Consensus       311 ~L~~L~l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          311 KVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             TCCEEEEESSC--CCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             cceEEEeccCc--cccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            56666665432  346777775 4888888888843 3322     1224567888888888 77662111235577888


Q ss_pred             CcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEE
Q 041388          204 SLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVK  283 (440)
Q Consensus       204 ~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~  283 (440)
                      .|++|++.+|....+  ....-..++|+.|.+. +|   .+..-...   -.++|++|.++++..... ..++++|+.++
T Consensus       388 ~L~~L~Ls~N~l~~l--p~~~~~~~~L~~L~Ls-~N---~l~~l~~~---~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~  457 (549)
T 2z81_A          388 NLTSLDISRNTFHPM--PDSCQWPEKMRFLNLS-ST---GIRVVKTC---IPQTLEVLDVSNNNLDSF-SLFLPRLQELY  457 (549)
T ss_dssp             TCCEEECTTCCCCCC--CSCCCCCTTCCEEECT-TS---CCSCCCTT---SCTTCSEEECCSSCCSCC-CCCCTTCCEEE
T ss_pred             CCCEEECCCCCCccC--ChhhcccccccEEECC-CC---Ccccccch---hcCCceEEECCCCChhhh-cccCChhcEEE
Confidence            888888888754333  1111123678888887 66   22110000   025788888887655433 35677888777


Q ss_pred             EEEeecccccCCchhhhhhhcccccccEEEEeccceeEee
Q 041388          284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE  323 (440)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~  323 (440)
                      +.......   -+     -...+++++.|.++.+.+..+.
T Consensus       458 Ls~N~l~~---ip-----~~~~l~~L~~L~Ls~N~l~~~~  489 (549)
T 2z81_A          458 ISRNKLKT---LP-----DASLFPVLLVMKISRNQLKSVP  489 (549)
T ss_dssp             CCSSCCSS---CC-----CGGGCTTCCEEECCSSCCCCCC
T ss_pred             CCCCccCc---CC-----CcccCccCCEEecCCCccCCcC
Confidence            75554320   00     1235677888888777665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.90  E-value=3.8e-06  Score=70.96  Aligned_cols=103  Identities=18%  Similarity=0.131  Sum_probs=64.4

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      ++++|++..+.-....+|..+..+++|++|+|. ...+........+++|+.|+|. ..+. + .+..++..+|.|+.|+
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~-~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISVSNLPKLPKLKKLELSENRIF-G-GLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCCSSCCCCSSCCEEEEESCCCC-S-CCCHHHHHCTTCCEEE
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCChhhhccCCCCCEEECcCCcCc-h-HHHHHHhhCCCCCEEe
Confidence            567776654321112566666668888888888 4445444445677888888888 7776 2 2556667788888888


Q ss_pred             EeeeeCCCCCCCcE-Ee-cccccceeEEEeec
Q 041388          210 VTCELHDDTPPPNL-II-SSATLKTCKLIVRS  239 (440)
Q Consensus       210 L~~c~~~~~~~~~l-~i-~~~~L~~L~i~~~~  239 (440)
                      +.++....+  ..+ .+ ..++|+.|.+. +|
T Consensus       102 Ls~N~l~~~--~~~~~l~~l~~L~~L~l~-~N  130 (168)
T 2ell_A          102 LSGNKLKDI--STLEPLKKLECLKSLDLF-NC  130 (168)
T ss_dssp             CBSSSCCSS--GGGGGGSSCSCCCEEECC-SS
T ss_pred             ccCCccCcc--hhHHHHhcCCCCCEEEee-CC
Confidence            888754322  111 11 23677777776 55

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.88  E-value=6.1e-06  Score=75.34  Aligned_cols=146  Identities=20%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388          151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT  229 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~  229 (440)
                      +..+++|++|++. +..+...+....+++|+.|+|. ..+. +-  .. +..++.|+.|.+.++....+  ..+  ..++
T Consensus        37 ~~~l~~L~~L~l~-~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~--~~-l~~l~~L~~L~L~~N~l~~l--~~~--~~~~  107 (263)
T 1xeu_A           37 QKELSGVQNFNGD-NSNIQSLAGMQFFTNLKELHLSHNQIS-DL--SP-LKDLTKLEELSVNRNRLKNL--NGI--PSAC  107 (263)
T ss_dssp             HHHHTTCSEEECT-TSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG-GTTCSSCCEEECCSSCCSCC--TTC--CCSS
T ss_pred             hhhcCcCcEEECc-CCCcccchHHhhCCCCCEEECCCCccC-CC--hh-hccCCCCCEEECCCCccCCc--Ccc--ccCc
Confidence            3457888888888 4455555556678888888888 7776 22  22 77888999999888754333  222  1278


Q ss_pred             cceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhccccc
Q 041388          230 LKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINS  308 (440)
Q Consensus       230 L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~  308 (440)
                      |+.|.+. +|   .+.. ... .-..++|+.|.++++..... .+..+++|+.+++.......        ...+..+++
T Consensus       108 L~~L~L~-~N---~l~~-~~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~--------~~~l~~l~~  173 (263)
T 1xeu_A          108 LSRLFLD-NN---ELRD-TDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN--------TGGLTRLKK  173 (263)
T ss_dssp             CCEEECC-SS---CCSB-SGG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB--------CTTSTTCCC
T ss_pred             ccEEEcc-CC---ccCC-Chh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc--------hHHhccCCC
Confidence            8888887 66   2311 111 11357788888876544322 23456666666654333221        223456667


Q ss_pred             ccEEEEeccce
Q 041388          309 CKYLYLSAGIM  319 (440)
Q Consensus       309 l~~L~l~~~~~  319 (440)
                      ++.|.++.+.+
T Consensus       174 L~~L~l~~N~~  184 (263)
T 1xeu_A          174 VNWIDLTGQKC  184 (263)
T ss_dssp             CCEEEEEEEEE
T ss_pred             CCEEeCCCCcc
Confidence            77777766544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.86  E-value=3.7e-06  Score=86.10  Aligned_cols=165  Identities=15%  Similarity=0.094  Sum_probs=101.9

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +++.|.+..+.  ...+| .+..+++|+.|+|+ ...+...+....+++|+.|.|. +.+. +  +. -+..++.|+.|.
T Consensus        44 ~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls-~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~--l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           44 SIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLN-GNKLTDIKPLTNLKNLGWLFLDENKIK-D--LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             TCCCCBCTTCC--CCCCT-TGGGCTTCCEEECT-TSCCCCCGGGGGCTTCCEEECCSSCCC-C--CT-TSTTCTTCCEEE
T ss_pred             CCCEEECcCCC--CCCCh-HHccCCCCCEEEee-CCCCCCChhhccCCCCCEEECcCCCCC-C--Ch-hhccCCCCCEEE
Confidence            67776664322  23344 46668899999998 4455444336778899999999 7776 2  22 367789999999


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEee
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMH  288 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~  288 (440)
                      |.+|....+  .. -...++|+.|.+. +|   .+.. . ...-..++|+.|.++++..... .+..+++|+.+++....
T Consensus       116 Ls~N~l~~l--~~-l~~l~~L~~L~Ls-~N---~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          116 LEHNGISDI--NG-LVHLPQLESLYLG-NN---KITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CTTSCCCCC--GG-GGGCTTCSEEECC-SS---CCCC-C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ecCCCCCCC--cc-ccCCCccCEEECC-CC---ccCC-c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC
Confidence            988754322  11 1134788888888 66   2311 1 0111357888888877654321 25667777777775543


Q ss_pred             cccccCCchhhhhhhcccccccEEEEecccee
Q 041388          289 AEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS  320 (440)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~  320 (440)
                      ...        ...+..+++|+.|.|+.+.+.
T Consensus       187 i~~--------l~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          187 ISD--------LRALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCB--------CGGGTTCTTCSEEECCSEEEE
T ss_pred             CCC--------ChHHccCCCCCEEEccCCcCc
Confidence            321        223566777788877766544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.86  E-value=3.6e-06  Score=87.02  Aligned_cols=239  Identities=15%  Similarity=0.115  Sum_probs=142.0

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccc-cceEEEE-EEeCCCcchhhhhcc--CCCc
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPC-VKILSVR-LENPNKSVTENLFCS--CPSL  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~-L~~L~L~-~~~~~~~~l~~lls~--cp~L  205 (440)
                      .+++.|++..+. -...+| .+..+++|++|+|+++.....|.....+++ |++|+|. ..+. .  +...+..  ++.|
T Consensus       330 ~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~--lp~~~~~~~l~~L  404 (636)
T 4eco_A          330 KKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y--IPNIFDAKSVSVM  404 (636)
T ss_dssp             TTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S--CCSCCCTTCSSCE
T ss_pred             CCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c--cchhhhhcccCcc
Confidence            378888885432 123677 677789999999995433333445667888 9999999 7765 2  2233333  4589


Q ss_pred             ceEEEeeeeCCCCCCCcEE------ecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEe---e--
Q 041388          206 EELSVTCELHDDTPPPNLI------ISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVM---H--  274 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~l~------i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~---~--  274 (440)
                      +.|++.++...+..+..+.      ...++|+.|.+. +|   .+......+.-..++|++|.++++....+..   .  
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N---~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~  480 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NN---QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE  480 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SS---CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CC---ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence            9999999854322101111      134689999998 76   2311011111125889999998866543321   1  


Q ss_pred             -----CCCCeeEEEEEEeecccccCCchhhhhhh-cccccccEEEEeccceeEee----ecccccccc-cccc---cchh
Q 041388          275 -----DLHSLKIVKLDIMHAEWAQVDPYRAIQLL-AGINSCKYLYLSAGIMSSVE----LHRNGGRTD-RMAS---TANR  340 (440)
Q Consensus       275 -----~~~~L~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~-~~~~---~~~~  340 (440)
                           ++++|+.+++......   ..+   ..+. ..+++++.|.++.+.+..++    .+.+|+.|+ ....   ...-
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~---~lp---~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT---KLS---DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC---BCC---GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             cccccccCCccEEECcCCcCC---ccC---hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence                 1227888777554432   111   2222 47899999999988776655    344555554 3210   0111


Q ss_pred             HHHHHHHhccCCCccccc-cccCCCCCccccccceeEEEEEeee
Q 041388          341 AKKLTELGKSCPAQEQFG-WLESDFDVPHCLVHTVKNIEIKGVQ  383 (440)
Q Consensus       341 ~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c~~~~L~~v~i~~~~  383 (440)
                      ...+..-+..+++|++|. ..+.-..+|..+..+|+.+.+.+-.
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNP  598 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCT
T ss_pred             cccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCC
Confidence            122344556789999998 4322244555566789988887543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.83  E-value=1.1e-05  Score=74.74  Aligned_cols=55  Identities=11%  Similarity=0.067  Sum_probs=23.9

Q ss_pred             cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +++|+.|++. ...+...+....+++|++|+|. ..+. +-  .. +..++.|+.|.+.++
T Consensus        45 l~~L~~L~l~-~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~--~~-l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           45 LNSIDQIIAN-NSDIKSVQGIQYLPNVTKLFLNGNKLT-DI--KP-LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHTCCEEECT-TSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG-GTTCTTCCEEECCSS
T ss_pred             cCcccEEEcc-CCCcccChhHhcCCCCCEEEccCCccC-CC--cc-cccCCCCCEEECCCC
Confidence            4445555555 3333333323444555555555 4443 11  11 444555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.83  E-value=4.7e-06  Score=78.80  Aligned_cols=124  Identities=8%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      +++.|++..+. -....|..+..+++|++|+|. ...+...+ ...+++|++|++. ..+.  ......+..++.|+.|.
T Consensus        79 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~-~~~~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           79 HLYALVLVNNK-ISKIHEKAFSPLRKLQKLYIS-KNHLVEIP-PNLPSSLVELRIHDNRIR--KVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TCCEEECCSSC-CCEECGGGSTTCTTCCEEECC-SSCCCSCC-SSCCTTCCEEECCSSCCC--CCCSGGGSSCSSCCEEE
T ss_pred             CCcEEECCCCc-cCccCHhHhhCcCCCCEEECC-CCcCCccC-ccccccCCEEECCCCccC--ccCHhHhCCCccCCEEE
Confidence            67777664322 112234455567888888888 44444444 2233778888888 6665  22234466788888888


Q ss_pred             EeeeeCCC--CCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEecccc
Q 041388          210 VTCELHDD--TPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLL  268 (440)
Q Consensus       210 L~~c~~~~--~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~  268 (440)
                      +.++....  .  ..-.+...+|+.|.+. ++   .+......   -.++|++|.++++..
T Consensus       154 l~~n~l~~~~~--~~~~~~~l~L~~L~l~-~n---~l~~l~~~---~~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          154 MGGNPLENSGF--EPGAFDGLKLNYLRIS-EA---KLTGIPKD---LPETLNELHLDHNKI  205 (332)
T ss_dssp             CCSCCCBGGGS--CTTSSCSCCCSCCBCC-SS---BCSSCCSS---SCSSCSCCBCCSSCC
T ss_pred             CCCCccccCCC--CcccccCCccCEEECc-CC---CCCccCcc---ccCCCCEEECCCCcC
Confidence            87764311  1  0001112267777776 55   22110000   125777777766543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.80  E-value=6.8e-06  Score=76.18  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=56.0

Q ss_pred             CCcEEEEEEEccCceeec-CccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          130 REVGEIQLYLGQQSRVEL-PEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      .+++.|++....  ...+ |..+..+++|++|+|.+ ..+...+....+++|++|+|. ..+.   .+...+..++.|+.
T Consensus        31 ~~l~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~l~~L~~  104 (290)
T 1p9a_G           31 KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTV  104 (290)
T ss_dssp             TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTT-SCCCEEECCSCCTTCCEEECCSSCCS---SCCCCTTTCTTCCE
T ss_pred             CCCCEEEcCCCc--CCccCHHHhhcCCCCCEEECCC-CccCcccCCCCCCcCCEEECCCCcCC---cCchhhccCCCCCE
Confidence            366666664221  1222 33445577888888883 334333224567788888888 6655   23334567788888


Q ss_pred             EEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      |.+.++....+. ...--..++|+.|.+. ++
T Consensus       105 L~l~~N~l~~l~-~~~~~~l~~L~~L~L~-~N  134 (290)
T 1p9a_G          105 LDVSFNRLTSLP-LGALRGLGELQELYLK-GN  134 (290)
T ss_dssp             EECCSSCCCCCC-SSTTTTCTTCCEEECT-TS
T ss_pred             EECCCCcCcccC-HHHHcCCCCCCEEECC-CC
Confidence            888776432220 0000123566777666 44

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.80  E-value=6.4e-06  Score=84.37  Aligned_cols=142  Identities=19%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .+++.|++..+.  ...+|. +..+++|+.|+|. ...+..++....+++|+.|+|. +.+. +  + .-+..||.|+.|
T Consensus        65 ~~L~~L~Ls~N~--l~~~~~-l~~l~~L~~L~Ls-~N~l~~l~~l~~l~~L~~L~Ls~N~l~-~--l-~~l~~l~~L~~L  136 (605)
T 1m9s_A           65 PNVTKLFLNGNK--LTDIKP-LTNLKNLGWLFLD-ENKIKDLSSLKDLKKLKSLSLEHNGIS-D--I-NGLVHLPQLESL  136 (605)
T ss_dssp             TTCCEEECTTSC--CCCCGG-GGGCTTCCEEECC-SSCCCCCTTSTTCTTCCEEECTTSCCC-C--C-GGGGGCTTCSEE
T ss_pred             CCCCEEEeeCCC--CCCChh-hccCCCCCEEECc-CCCCCCChhhccCCCCCEEEecCCCCC-C--C-ccccCCCccCEE
Confidence            366766664321  223333 5557777777777 4455555445667777777777 6665 2  1 225567777777


Q ss_pred             EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEe
Q 041388          209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIM  287 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~  287 (440)
                      .|.+|....+  .. --..++|+.|.+. +|   .+.. ... .-..++|+.|.++++....+ .+.++++|+.+.+...
T Consensus       137 ~Ls~N~l~~l--~~-l~~l~~L~~L~Ls-~N---~l~~-~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          137 YLGNNKITDI--TV-LSRLTKLDTLSLE-DN---QISD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             ECCSSCCCCC--GG-GGSCTTCSEEECC-SS---CCCC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred             ECCCCccCCc--hh-hcccCCCCEEECc-CC---cCCC-chh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence            7777643221  11 0123667777776 55   2211 111 22356777777776543332 2455667777666544


Q ss_pred             e
Q 041388          288 H  288 (440)
Q Consensus       288 ~  288 (440)
                      .
T Consensus       208 ~  208 (605)
T 1m9s_A          208 E  208 (605)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.80  E-value=4.1e-05  Score=76.92  Aligned_cols=75  Identities=16%  Similarity=0.094  Sum_probs=46.7

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccC---CCCcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV---PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      ..+++|++....  ...+|..  .+++|++|+|++ ..+..   |.....+++|++|+|. ..+. ..    .+..++.|
T Consensus        69 ~~L~~L~Ls~N~--l~~lp~~--~l~~L~~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~~----~~~~l~~L  138 (520)
T 2z7x_B           69 QELEYLDLSHNK--LVKISCH--PTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLE-KS----SVLPIAHL  138 (520)
T ss_dssp             TTCCEEECCSSC--CCEEECC--CCCCCSEEECCS-SCCSSCCCCGGGGGCTTCCEEEEEESSCC-GG----GGGGGTTS
T ss_pred             cCCCEEecCCCc--eeecCcc--ccCCccEEeccC-CccccccchhhhccCCcceEEEecCcccc-hh----hccccccc
Confidence            367777775332  2345554  677888888884 33332   2345667788888888 6665 32    24556777


Q ss_pred             --ceEEEeeee
Q 041388          206 --EELSVTCEL  214 (440)
Q Consensus       206 --e~L~L~~c~  214 (440)
                        ++|.+.++.
T Consensus       139 ~L~~L~l~~n~  149 (520)
T 2z7x_B          139 NISKVLLVLGE  149 (520)
T ss_dssp             CEEEEEEEECT
T ss_pred             eeeEEEeeccc
Confidence              888888764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.79  E-value=4.3e-06  Score=75.72  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             cCCCCChHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388           26 RISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNV   60 (440)
Q Consensus        26 ~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l   60 (440)
                      .+++||+||+.+|||||+++|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999963

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.78  E-value=9.1e-06  Score=73.51  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=44.3

Q ss_pred             eecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP  221 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~  221 (440)
                      ..+|..+.  ++|+.|+|. ...+.. ++ ....+++|++|+|. ..+. . .....+..++.|++|.|.++....+. .
T Consensus        27 ~~~p~~~~--~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~  100 (251)
T 3m19_A           27 DSVPSGIP--ADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYNQLQ-T-LSAGVFDDLTELGTLGLANNQLASLP-L  100 (251)
T ss_dssp             SSCCSCCC--TTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCCC-C-CCTTTTTTCTTCCEEECTTSCCCCCC-T
T ss_pred             cccCCCCC--CCCCEEEcc-CCCcCccCHhHhcCcccCCEEECCCCcCC-c-cCHhHhccCCcCCEEECCCCcccccC-h
Confidence            34454433  467777777 333332 22 24456777777777 6554 1 22334556677777777665332220 0


Q ss_pred             cEEecccccceeEEEeec
Q 041388          222 NLIISSATLKTCKLIVRS  239 (440)
Q Consensus       222 ~l~i~~~~L~~L~i~~~~  239 (440)
                      ..--..++|+.|.+. ++
T Consensus       101 ~~~~~l~~L~~L~L~-~N  117 (251)
T 3m19_A          101 GVFDHLTQLDKLYLG-GN  117 (251)
T ss_dssp             TTTTTCTTCCEEECC-SS
T ss_pred             hHhcccCCCCEEEcC-CC
Confidence            000123566666665 44

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.77  E-value=1.4e-06  Score=83.62  Aligned_cols=58  Identities=19%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             hhhccc-ccccEEEEeccceeE-----ee----e-cccccccc-cccc-cchhHHHHHHHhccCCCccccc
Q 041388          301 QLLAGI-NSCKYLYLSAGIMSS-----VE----L-HRNGGRTD-RMAS-TANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       301 ~~l~~~-~~l~~L~l~~~~~~~-----~~----~-f~~L~~L~-~~~~-~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ..+..+ ++++.|.++.+.+..     +.    . ..+|+.|+ ..+. .......+..+++.+++|+.|.
T Consensus       189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~  259 (362)
T 3goz_A          189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY  259 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred             HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            344444 377777776654443     11    1 12455554 2220 0222344455556666666665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.77  E-value=7.9e-05  Score=75.71  Aligned_cols=54  Identities=9%  Similarity=0.069  Sum_probs=25.7

Q ss_pred             cccccccEEEEeccceeEee-----ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388          304 AGINSCKYLYLSAGIMSSVE-----LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       304 ~~~~~l~~L~l~~~~~~~~~-----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ..+++++.|.++.+.+....     .+++|+.|. ... .-.....+...+..+++|+.|.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~  409 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLD  409 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEE
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEE
Confidence            45566777776665444311     233344443 222 0112223444556666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.75  E-value=5.8e-06  Score=78.14  Aligned_cols=173  Identities=16%  Similarity=0.155  Sum_probs=105.0

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      .+++.|++...  ....+|..++  ++|++|++. ...+...+  ....+++|++|++. ..+.........+..+ .|+
T Consensus       102 ~~L~~L~L~~n--~l~~l~~~~~--~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A          102 RKLQKLYISKN--HLVEIPPNLP--SSLVELRIH-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             TTCCEEECCSS--CCCSCCSSCC--TTCCEEECC-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             CCCCEEECCCC--cCCccCcccc--ccCCEEECC-CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            47888888543  2346776655  899999999 44444433  25678999999999 7775111222334444 899


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE---EeeCCCCeeEEE
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF---VMHDLHSLKIVK  283 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~  283 (440)
                      .|.+.++....++ ..   ..++|+.|.+. ++   .+.......-...++|++|.++++.....   .+..+++|+.++
T Consensus       176 ~L~l~~n~l~~l~-~~---~~~~L~~L~l~-~n---~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  247 (332)
T 2ft3_A          176 YLRISEAKLTGIP-KD---LPETLNELHLD-HN---KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH  247 (332)
T ss_dssp             CCBCCSSBCSSCC-SS---SCSSCSCCBCC-SS---CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             EEECcCCCCCccC-cc---ccCCCCEEECC-CC---cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence            9999887543331 11   12689999988 66   22110000112357899999887654432   245677888777


Q ss_pred             EEEeecccccCCchhhhhhhcccccccEEEEeccceeEee
Q 041388          284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE  323 (440)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~  323 (440)
                      +......   ..    ...+..+++++.|.++.+.+..+.
T Consensus       248 L~~N~l~---~l----p~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          248 LDNNKLS---RV----PAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             CCSSCCC---BC----CTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             CCCCcCe---ec----ChhhhcCccCCEEECCCCCCCccC
Confidence            7554332   01    122466788888888777665543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.72  E-value=4.5e-05  Score=68.26  Aligned_cols=55  Identities=13%  Similarity=0.180  Sum_probs=29.2

Q ss_pred             cccEEEecCCccccC-CC-CcccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeee
Q 041388          156 CLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       156 ~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +|++|+|.+ ..+.. ++ ....+++|++|+|. .. +.  ..-...+..++.|++|.+.+|
T Consensus        32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~   90 (239)
T 2xwt_C           32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNT   90 (239)
T ss_dssp             TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEE
T ss_pred             cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCC
Confidence            667777763 33322 22 24456667777776 54 33  111223456677777777663

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.71  E-value=0.00018  Score=68.45  Aligned_cols=186  Identities=12%  Similarity=0.036  Sum_probs=103.5

Q ss_pred             CCcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCC--CcccccccceEEEE--EEeCCCcchhhhhccCCC
Q 041388          130 REVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR--LENPNKSVTENLFCSCPS  204 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~  204 (440)
                      .++++|++...  ....+|...| .+++|++|+|+++......+  .+.++++|+.+...  ..+.  ..-...+..++.
T Consensus        30 ~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~--~l~~~~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL--YINPEAFQNLPN  105 (350)
T ss_dssp             TTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC--EECTTSBCCCTT
T ss_pred             CCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc--ccCchhhhhccc
Confidence            37788887643  2356777655 48999999998554333322  23455665554333  2222  111345678899


Q ss_pred             cceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEE-----ecCCceEEEEeccccccEEee--CCC
Q 041388          205 LEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTI-----TAPKLESLEIYSDLLGSFVMH--DLH  277 (440)
Q Consensus       205 Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~-----~~p~L~~L~~~~~~~~~~~~~--~~~  277 (440)
                      |+.|.+.++...... .........+..|.+. ++..      ...+..     -...++.|.++++....+...  ..+
T Consensus       106 L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~-~~~~------i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~  177 (350)
T 4ay9_X          106 LQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQ-DNIN------IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT  177 (350)
T ss_dssp             CCEEEEEEECCSSCC-CCTTCCBSSCEEEEEE-SCTT------CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred             cccccccccccccCC-chhhcccchhhhhhhc-cccc------cccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence            999999998543321 1111234556666665 4311      112211     124677888877654433222  223


Q ss_pred             CeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc
Q 041388          278 SLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD  332 (440)
Q Consensus       278 ~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~  332 (440)
                      +|..+.+.......  ..+   ...+.++++++.|+++.+.+..++  .|.+|++|+
T Consensus       178 ~L~~l~l~~~n~l~--~i~---~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          178 QLDELNLSDNNNLE--ELP---NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             EEEEEECTTCTTCC--CCC---TTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             chhHHhhccCCccc--CCC---HHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence            34443332111110  111   345678899999999998888776  688888887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.70  E-value=4.8e-05  Score=77.33  Aligned_cols=124  Identities=17%  Similarity=0.070  Sum_probs=66.6

Q ss_pred             CCcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          130 REVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      .++++|++....  ...+|. .+..+++|++|+|+++..-..++ ....+++|++|+|. ..+. .  +...  .++.|+
T Consensus        52 ~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~--lp~~--~l~~L~  124 (562)
T 3a79_B           52 PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N--ISCC--PMASLR  124 (562)
T ss_dssp             TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-E--ECSC--CCTTCS
T ss_pred             CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-c--cCcc--ccccCC
Confidence            477777775332  234443 44557888888888432222222 35567788888888 6554 1  1111  678888


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCc--eEEEEeccc
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKL--ESLEIYSDL  267 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L--~~L~~~~~~  267 (440)
                      +|++.++....+.....--..++|+.|.+. ++   .+....   ....++|  ++|.++++.
T Consensus       125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~-~n---~l~~~~---~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLS-AA---KFRQLD---LLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             EEECCSSCCSBCCCCGGGGGCTTCCEEEEE-CS---BCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred             EEECCCCCccccCchHhhcccCcccEEecC-CC---ccccCc---hhhhhhceeeEEEeeccc
Confidence            888888643221000001123678888887 55   221100   0112445  788777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.68  E-value=7.2e-06  Score=76.83  Aligned_cols=80  Identities=18%  Similarity=0.188  Sum_probs=35.2

Q ss_pred             CCcEEEEEEEccCceeecCccc--cccccccEEEecCCccccCCC-Ccccc-----cccceEEEE-EEeCCCcchhhhhc
Q 041388          130 REVGEIQLYLGQQSRVELPEAI--YSAACLKVLTLDSDFSIQVPS-SGTCF-----PCVKILSVR-LENPNKSVTENLFC  200 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~l~~~~-~~~~~-----~~L~~L~L~-~~~~~~~~l~~lls  200 (440)
                      .++++|++....- ...+|..+  ..+++|++|+|++ ..+...+ ....+     ++|++|+|. ..+. . .....+.
T Consensus        95 ~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-~-~~~~~~~  170 (312)
T 1wwl_A           95 SGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-N-FSCEQVR  170 (312)
T ss_dssp             SCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC-C-CCTTTCC
T ss_pred             CCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc-c-chHHHhc
Confidence            3555665543221 12334433  3355566666652 2222212 11222     556666665 5443 1 1112344


Q ss_pred             cCCCcceEEEeee
Q 041388          201 SCPSLEELSVTCE  213 (440)
Q Consensus       201 ~cp~Le~L~L~~c  213 (440)
                      .++.|++|++.++
T Consensus       171 ~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          171 VFPALSTLDLSDN  183 (312)
T ss_dssp             CCSSCCEEECCSC
T ss_pred             cCCCCCEEECCCC
Confidence            5555666665554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.68  E-value=7.6e-06  Score=85.24  Aligned_cols=172  Identities=12%  Similarity=0.124  Sum_probs=79.1

Q ss_pred             ccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388          155 ACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT  232 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~  232 (440)
                      ++|+.|+|.++.....+ .....+++|+.|+|. ..+. ...-...+.+++.|++|++.+|......+.. -...++|+.
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~  458 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQR  458 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE-EECCSGGGTTCTTCCEEECCSCSEEECCTTT-TTTCTTCCE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc-cccCcccccCcccccEEecCCCCcceeChhh-hhcCccccc
Confidence            57778887733222222 234567778888777 5544 2111244567777777777776321110000 012456666


Q ss_pred             eEEEeecccccccc--cccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCch-hh-hhhhcc
Q 041388          233 CKLIVRSEDMLFRE--VDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPY-RA-IQLLAG  305 (440)
Q Consensus       233 L~i~~~~~~~~~~~--~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~-~~-~~~l~~  305 (440)
                      |.+. ++   .+..  ......-..++|+.|.++++....+.   +.++++|+.+++.......-....+ +. ...+.+
T Consensus       459 L~l~-~n---~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~  534 (680)
T 1ziw_A          459 LMLR-RV---ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG  534 (680)
T ss_dssp             EECT-TS---CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred             chhc-cc---cccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence            6665 44   1100  00000012456666666655433221   3455666666554433210000000 00 122455


Q ss_pred             cccccEEEEeccceeEee--ecccccccc
Q 041388          306 INSCKYLYLSAGIMSSVE--LHRNGGRTD  332 (440)
Q Consensus       306 ~~~l~~L~l~~~~~~~~~--~f~~L~~L~  332 (440)
                      +++++.|.++.+.+..++  .|.++++|+
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            666666666665555444  244444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.67  E-value=1.2e-05  Score=83.67  Aligned_cols=166  Identities=19%  Similarity=0.183  Sum_probs=90.3

Q ss_pred             ceeeEEEEeeCCCC--hhhHHHHHHHHHcCCcEEEEEEEccCceeec-CccccccccccEEEecCCccccCCC--Ccccc
Q 041388          103 KIGKFSLYCSRPTN--LARFYDWIATALMREVGEIQLYLGQQSRVEL-PEAIYSAACLKVLTLDSDFSIQVPS--SGTCF  177 (440)
Q Consensus       103 ~v~~l~l~~~~~~~--~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~  177 (440)
                      .++.+.+....-..  ...+.      .-.+++.|++....  ...+ |..+..+++|++|+|.+ ..+...+  ....+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l   96 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFT------RYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFC   96 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGG------GGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             CCcEEECCCCCCCCcCHHHHh------CCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCC-CccCccChhhhccC
Confidence            57777776543222  11111      12478888775321  2223 44455688899999884 3443333  35678


Q ss_pred             cccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccc-cEEE-Ee
Q 041388          178 PCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVD-YMLT-IT  254 (440)
Q Consensus       178 ~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~-~~l~-~~  254 (440)
                      ++|++|+|. ..+. . .....+..++.|++|++.+|......+..+ -..++|+.|.+. ++   .+.... ..+. ..
T Consensus        97 ~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~-~n---~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           97 TNLTELHLMSNSIQ-K-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLS-NN---KIQALKSEELDIFA  169 (680)
T ss_dssp             TTCSEEECCSSCCC-C-CCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECC-SS---CCCCBCHHHHGGGT
T ss_pred             CCCCEEECCCCccC-c-cChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEcc-CC---cccccCHHHhhccc
Confidence            889999888 7665 2 122345678889999988874322210111 135788888887 65   221000 0000 12


Q ss_pred             cCCceEEEEeccccccE---EeeCCCCeeEEEE
Q 041388          255 APKLESLEIYSDLLGSF---VMHDLHSLKIVKL  284 (440)
Q Consensus       255 ~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~i  284 (440)
                      .++|++|.++++.....   .+.++++|+.+.+
T Consensus       170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  202 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL  202 (680)
T ss_dssp             TCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred             cccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence            36788888877543222   1234455555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.65  E-value=8.3e-06  Score=74.83  Aligned_cols=127  Identities=19%  Similarity=0.191  Sum_probs=69.2

Q ss_pred             CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      ++++|++...  ....++. .+..+++|++|+|.++ .+.. ++ ....+++|++|+|. ..+. . .....+..++.|+
T Consensus        29 ~l~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~  103 (276)
T 2z62_A           29 STKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ-S-LALGAFSGLSSLQ  103 (276)
T ss_dssp             TCCEEECTTC--CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC-E-ECTTTTTTCTTCC
T ss_pred             CccEEECCCC--cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC-c-cChhhhcCCcccc
Confidence            5666666322  1233443 4455788888888843 3332 22 35567788888888 6654 1 1223456778888


Q ss_pred             eEEEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccc-cEEEEecCCceEEEEecccc
Q 041388          207 ELSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVD-YMLTITAPKLESLEIYSDLL  268 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~-~~l~~~~p~L~~L~~~~~~~  268 (440)
                      +|.+.++.....  ....+ ..++|+.|.+. ++   .+.... ....-..++|++|.++++..
T Consensus       104 ~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~-~n---~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          104 KLVAVETNLASL--ENFPIGHLKTLKELNVA-HN---LIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             EEECTTSCCCCS--TTCCCTTCTTCCEEECC-SS---CCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEECCCCCcccc--CchhcccCCCCCEEECc-CC---ccceecCchhhccCCCCCEEECCCCCC
Confidence            888877644333  22122 33677888777 55   221000 00011246777777766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.65  E-value=2.8e-06  Score=70.16  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      ++++|++..+.-....+|..+..+++|++|+|. +..+...+....+++|++|+|. ..+. + .+...+..++.|+.|+
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~Ls~n~i~-~-~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSIANLPKLNKLKKLELSDNRVS-G-GLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCCTTCCCCTTCCEEECCSSCCC-S-CTHHHHHHCTTCCEEE
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCchhhhcCCCCCEEECCCCccc-c-hHHHHhhhCCCCCEEE
Confidence            466665543221112466655667788888887 4444444445567788888888 7665 2 2556666778888888


Q ss_pred             EeeeeCCCCCCC--cEEecccccceeEEEeec
Q 041388          210 VTCELHDDTPPP--NLIISSATLKTCKLIVRS  239 (440)
Q Consensus       210 L~~c~~~~~~~~--~l~i~~~~L~~L~i~~~~  239 (440)
                      +.++.....  .  ..--..++|+.|.+. +|
T Consensus        95 ls~N~i~~~--~~~~~~~~l~~L~~L~l~-~N  123 (149)
T 2je0_A           95 LSGNKIKDL--STIEPLKKLENLKSLDLF-NC  123 (149)
T ss_dssp             CTTSCCCSH--HHHGGGGGCTTCCEEECT-TC
T ss_pred             CCCCcCCCh--HHHHHHhhCCCCCEEeCc-CC
Confidence            877643211  0  000123566666666 54

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.58  E-value=2.5e-05  Score=65.74  Aligned_cols=79  Identities=16%  Similarity=0.100  Sum_probs=53.6

Q ss_pred             cccccEEEecCCcccc--C-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388          154 AACLKVLTLDSDFSIQ--V-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT  229 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~--~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~  229 (440)
                      .++|++|+|. +..+.  . +.....+++|+.|+|. +.+. +.   ..+..++.|+.|++.+|...... ....-..++
T Consensus        23 ~~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~---~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~   96 (168)
T 2ell_A           23 PAAVRELVLD-NCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV---SNLPKLPKLKKLELSENRIFGGL-DMLAEKLPN   96 (168)
T ss_dssp             TTSCSEEECC-SCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC---SSCCCCSSCCEEEEESCCCCSCC-CHHHHHCTT
T ss_pred             cccCCEEECC-CCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch---hhhccCCCCCEEECcCCcCchHH-HHHHhhCCC
Confidence            4789999999 44554  3 3334678999999999 8776 32   55678999999999997543210 111112577


Q ss_pred             cceeEEEeec
Q 041388          230 LKTCKLIVRS  239 (440)
Q Consensus       230 L~~L~i~~~~  239 (440)
                      |+.|.+. +|
T Consensus        97 L~~L~Ls-~N  105 (168)
T 2ell_A           97 LTHLNLS-GN  105 (168)
T ss_dssp             CCEEECB-SS
T ss_pred             CCEEecc-CC
Confidence            8888877 65

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.57  E-value=1.6e-05  Score=71.96  Aligned_cols=154  Identities=15%  Similarity=0.114  Sum_probs=94.4

Q ss_pred             ccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccccee
Q 041388          155 ACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTC  233 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L  233 (440)
                      .+.+++++. +..+...| ..-.++|+.|+|. ..+. . .....+..++.|++|.|.++...... ...--..++|+.|
T Consensus        14 ~~~~~l~~~-~~~l~~~p-~~~~~~l~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQ-GKSLDSVP-SGIPADTEKLDLQSTGLA-T-LSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECT-TCCCSSCC-SCCCTTCCEEECTTSCCC-C-CCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEE
T ss_pred             CCCeEEecC-CCCccccC-CCCCCCCCEEEccCCCcC-c-cCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEE
Confidence            567889988 55666655 2233789999999 8776 2 22345778999999999997543221 0001124789999


Q ss_pred             EEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCchhhhhhhccccccc
Q 041388          234 KLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCK  310 (440)
Q Consensus       234 ~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~  310 (440)
                      .+. ++   .+.......--..++|++|.++++....+.   +.++++|+.+++.......   .+   ...+..+++++
T Consensus        89 ~L~-~n---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~---~~~~~~l~~L~  158 (251)
T 3m19_A           89 GLA-NN---QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS---IP---AGAFDKLTNLQ  158 (251)
T ss_dssp             ECT-TS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CC---TTTTTTCTTCC
T ss_pred             ECC-CC---cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc---cC---HHHcCcCcCCC
Confidence            998 66   231100011123588999999887554332   3557778777775443211   11   22356677888


Q ss_pred             EEEEeccceeEee
Q 041388          311 YLYLSAGIMSSVE  323 (440)
Q Consensus       311 ~L~l~~~~~~~~~  323 (440)
                      .|.|+.+.+..+.
T Consensus       159 ~L~L~~N~l~~~~  171 (251)
T 3m19_A          159 TLSLSTNQLQSVP  171 (251)
T ss_dssp             EEECCSSCCSCCC
T ss_pred             EEECCCCcCCccC
Confidence            8888777665544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.56  E-value=7.5e-06  Score=76.69  Aligned_cols=130  Identities=15%  Similarity=0.122  Sum_probs=63.6

Q ss_pred             CcEEEEEEEccCceeecCcccccc-----ccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhh--hcc
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSA-----ACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENL--FCS  201 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~-----~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~l--ls~  201 (440)
                      .+++|++....  ...+|..+...     ++|++|+|+++.....+ .....+++|++|+|. ..+.+...+..-  +..
T Consensus       122 ~L~~L~Ls~N~--l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          122 DLNILNLRNVS--WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCSEEEEESCB--CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CccEEEccCCC--CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            66777775422  12224444333     67777777733322222 234567777777777 654311111111  256


Q ss_pred             CCCcceEEEeeeeCCCCCCCcEE----ecccccceeEEEeecccccccccc-cEEEEecCCceEEEEecccc
Q 041388          202 CPSLEELSVTCELHDDTPPPNLI----ISSATLKTCKLIVRSEDMLFREVD-YMLTITAPKLESLEIYSDLL  268 (440)
Q Consensus       202 cp~Le~L~L~~c~~~~~~~~~l~----i~~~~L~~L~i~~~~~~~~~~~~~-~~l~~~~p~L~~L~~~~~~~  268 (440)
                      ++.|++|++.++.....  ..+.    -..++|+.|.+. ++   .+.... .......++|++|.++++..
T Consensus       200 l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L~~L~Ls-~N---~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETP--SGVCSALAAARVQLQGLDLS-HN---SLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             CTTCCEEECTTSCCCCH--HHHHHHHHHTTCCCSEEECT-TS---CCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             CCCCCEEECCCCcCcch--HHHHHHHHhcCCCCCEEECC-CC---cCCcccchhhhhhcCCCCEEECCCCcc
Confidence            77777777777643211  1111    022567777776 55   221100 01111246777777766543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.50  E-value=6.5e-06  Score=69.61  Aligned_cols=58  Identities=12%  Similarity=0.024  Sum_probs=28.9

Q ss_pred             cccccEEEecCCccccCCC--CcccccccceEEEE-EE-eCCCcchhhhhcc---CCCcceEEEeee
Q 041388          154 AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LE-NPNKSVTENLFCS---CPSLEELSVTCE  213 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~---cp~Le~L~L~~c  213 (440)
                      .-.|++|+|+ .+.+++..  ...++++|++|+|. |. ++ |.++..+...   |+.|++|+|.+|
T Consensus        60 ~~~L~~LDLs-~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           60 KYKIQAIDAT-DSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CCCEEEEEEE-SCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             CceEeEEeCc-CCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCC
Confidence            3456666666 33343321  12345555666665 53 33 5555555442   455666666555

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.48  E-value=2.1e-05  Score=77.49  Aligned_cols=40  Identities=20%  Similarity=0.486  Sum_probs=36.8

Q ss_pred             CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHhcc
Q 041388           24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTA   63 (440)
Q Consensus        24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~   63 (440)
                      .|.|+.||+||+.+||+||+.+++++++.|||+|+++...
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999999999976443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.47  E-value=7.5e-05  Score=71.27  Aligned_cols=121  Identities=13%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCCceeeEEEEeeCCC-C--hhhHHHHHHHHH-cCCcEEEEEEEccCc--------eeecCcccccccc
Q 041388           89 ADFVHTVLLRTNPAKIGKFSLYCSRPT-N--LARFYDWIATAL-MREVGEIQLYLGQQS--------RVELPEAIYSAAC  156 (440)
Q Consensus        89 ~~~v~~~L~~~~~~~v~~l~l~~~~~~-~--~~~~~~wi~~~~-~~~l~~L~l~~~~~~--------~~~lp~~l~~~~~  156 (440)
                      .+.+.++|.......|+.+.+..-... .  ...+..++..+. -.+++.|.+......        ...++..+..+++
T Consensus        94 ~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~  173 (362)
T 2ra8_A           94 VNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL  173 (362)
T ss_dssp             CCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTT
T ss_pred             HHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCC
Confidence            344556666655556787777643211 1  123444443221 248999987421110        1124444556899


Q ss_pred             ccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhh-ccCCCcceEEEee
Q 041388          157 LKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLF-CSCPSLEELSVTC  212 (440)
Q Consensus       157 L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~ll-s~cp~Le~L~L~~  212 (440)
                      |+.|.|.++..+..++  ...++|++|.|. +.+. +..+..+. +.+|.|+.|.|..
T Consensus       174 L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~-~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          174 LNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLP-DSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             CCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCC-HHHHHHHHHSBCTTCCEEEEEC
T ss_pred             CcEEEEeCCCCceecc--ccCCCCcEEEEecCCCC-hHHHHHHHHccCCCCcEEEEec
Confidence            9999998553344333  347899999999 8877 66666665 3799999999964

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.47  E-value=5.1e-06  Score=79.61  Aligned_cols=231  Identities=13%  Similarity=0.024  Sum_probs=124.1

Q ss_pred             CccccccccccEEEecCCccccCCC------Cccccc-ccceEEEE-EEeCCCcc---hhhhhccC-CCcceEEEeeeeC
Q 041388          148 PEAIYSAACLKVLTLDSDFSIQVPS------SGTCFP-CVKILSVR-LENPNKSV---TENLFCSC-PSLEELSVTCELH  215 (440)
Q Consensus       148 p~~l~~~~~L~~L~L~~~~~l~~~~------~~~~~~-~L~~L~L~-~~~~~~~~---l~~lls~c-p~Le~L~L~~c~~  215 (440)
                      |..+...++|++|+|+ ...+...+      ....++ +|++|+|. +.+. +..   +..++..+ +.|++|+|.+|..
T Consensus        15 ~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            3333345669999999 55565543      123566 89999999 8877 332   44444444 9999999999853


Q ss_pred             CCCCCCcEE----e-cc-cccceeEEEeeccccccccccc-EEE--Ee--cCCceEEEEeccccccEEeeCCCCeeEEEE
Q 041388          216 DDTPPPNLI----I-SS-ATLKTCKLIVRSEDMLFREVDY-MLT--IT--APKLESLEIYSDLLGSFVMHDLHSLKIVKL  284 (440)
Q Consensus       216 ~~~~~~~l~----i-~~-~~L~~L~i~~~~~~~~~~~~~~-~l~--~~--~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i  284 (440)
                      ...  ..-.    + .. ++|+.|.+. +|   .+..... .+.  +.  .++|++|.++++....              
T Consensus        93 ~~~--~~~~l~~~l~~~~~~L~~L~Ls-~N---~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------------  152 (362)
T 3goz_A           93 SYK--SSDELVKTLAAIPFTITVLDLG-WN---DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--------------  152 (362)
T ss_dssp             GGS--CHHHHHHHHHTSCTTCCEEECC-SS---CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--------------
T ss_pred             ChH--HHHHHHHHHHhCCCCccEEECc-CC---cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--------------
Confidence            222  1110    1 11 678888887 66   2321000 000  00  1367777776543211              


Q ss_pred             EEeecccccCCchhh-hhhhcccc-cccEEEEeccceeEee---------ec-ccccccc-cccc-cchhHHHHHHHhcc
Q 041388          285 DIMHAEWAQVDPYRA-IQLLAGIN-SCKYLYLSAGIMSSVE---------LH-RNGGRTD-RMAS-TANRAKKLTELGKS  350 (440)
Q Consensus       285 ~~~~~~~~~~~~~~~-~~~l~~~~-~l~~L~l~~~~~~~~~---------~f-~~L~~L~-~~~~-~~~~~~~l~~lL~~  350 (440)
                               ... .. ...+..++ +++.|.++.+.+....         .+ .+|+.|+ ..+. .......+...+..
T Consensus       153 ---------~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          153 ---------KSS-DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             ---------SCH-HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             ---------HHH-HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence                     000 11 33445555 8999999887664332         33 4788887 4431 12233446666655


Q ss_pred             -CCCccccc-cccC-CCCC----cc--ccccceeEEEEEeee---cCcchHHHHHHHHhhccccceEEEEee
Q 041388          351 -CPAQEQFG-WLES-DFDV----PH--CLVHTVKNIEIKGVQ---GDEDERPLLKYLLQFAAAMEKMLMWAK  410 (440)
Q Consensus       351 -~p~L~~L~-~~~~-~~~~----~~--c~~~~L~~v~i~~~~---~~~~~~~~~~~ll~~a~~L~~m~i~~~  410 (440)
                       +++|++|. ..+. +...    ..  ....+|+.+.+.+..   -....+..+..-+.+.+.|+.+.+...
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence             56999998 4321 1111    11  224679999998654   122223333333344555555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.40  E-value=0.00013  Score=64.44  Aligned_cols=65  Identities=15%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             eecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      ..+|..+.  ++|+.|+|.++ .+.. ++ .+..+++|+.|+|. ..+.  ......+.+++.|+.|+|.++.
T Consensus        24 ~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           24 TEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             SSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSSC
T ss_pred             CcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCCc
Confidence            34555433  56777777733 3322 22 34567777777777 6554  1223345667777777777754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.35  E-value=1.3e-05  Score=73.07  Aligned_cols=156  Identities=14%  Similarity=0.069  Sum_probs=98.1

Q ss_pred             cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388          154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT  232 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~  232 (440)
                      ..+++.+.++ ...+...+....+++|+.|++. ..+. +  +. -+..++.|++|.|.++....+  .. --..++|+.
T Consensus        18 l~~l~~l~l~-~~~i~~~~~~~~l~~L~~L~l~~n~i~-~--l~-~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLG-KQSVTDLVSQKELSGVQNFNGDNSNIQ-S--LA-GMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHT-CSCTTSEECHHHHTTCSEEECTTSCCC-C--CT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCE
T ss_pred             HHHHHHHHhc-CCCcccccchhhcCcCcEEECcCCCcc-c--ch-HHhhCCCCCEEECCCCccCCC--hh-hccCCCCCE
Confidence            4556666777 4444444346678999999999 8776 2  22 367899999999999865444  22 113488999


Q ss_pred             eEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccE
Q 041388          233 CKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKY  311 (440)
Q Consensus       233 L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~  311 (440)
                      |.+. ++   .+.. ...+.  .++|++|.++++..... .+.++++|+.+++.......        ...+..+++++.
T Consensus        90 L~L~-~N---~l~~-l~~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--------~~~l~~l~~L~~  154 (263)
T 1xeu_A           90 LSVN-RN---RLKN-LNGIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS--------IVMLGFLSKLEV  154 (263)
T ss_dssp             EECC-SS---CCSC-CTTCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB--------CGGGGGCTTCCE
T ss_pred             EECC-CC---ccCC-cCccc--cCcccEEEccCCccCCChhhcCcccccEEECCCCcCCC--------ChHHccCCCCCE
Confidence            9998 77   2321 11111  18999999988754432 24567777777764433221        223566778888


Q ss_pred             EEEeccceeEee---ecccccccc
Q 041388          312 LYLSAGIMSSVE---LHRNGGRTD  332 (440)
Q Consensus       312 L~l~~~~~~~~~---~f~~L~~L~  332 (440)
                      |.++.+.+..+.   .+++|+.|+
T Consensus       155 L~L~~N~i~~~~~l~~l~~L~~L~  178 (263)
T 1xeu_A          155 LDLHGNEITNTGGLTRLKKVNWID  178 (263)
T ss_dssp             EECTTSCCCBCTTSTTCCCCCEEE
T ss_pred             EECCCCcCcchHHhccCCCCCEEe
Confidence            888776655444   344444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.34  E-value=1.1e-05  Score=75.59  Aligned_cols=210  Identities=15%  Similarity=0.111  Sum_probs=126.6

Q ss_pred             ceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccc--cccccccEEEecCCccccCC-C-----Cc
Q 041388          103 KIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAI--YSAACLKVLTLDSDFSIQVP-S-----SG  174 (440)
Q Consensus       103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~l~~~-~-----~~  174 (440)
                      .++.+.+.-.. .....+...........+++|++..+. -....|..+  ...++|++|+|. ...+... +     ..
T Consensus        65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLR-NVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEE-SCCCSSTTSSHHHHHT
T ss_pred             ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEee-cccccchhhhhHHHHh
Confidence            46666655322 124445555555555679999997542 123455555  568999999999 4444331 1     12


Q ss_pred             ccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCC---CCCCcEE-ecccccceeEEEeeccccccccccc
Q 041388          175 TCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDD---TPPPNLI-ISSATLKTCKLIVRSEDMLFREVDY  249 (440)
Q Consensus       175 ~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~---~~~~~l~-i~~~~L~~L~i~~~~~~~~~~~~~~  249 (440)
                      ..+++|++|+|. ..+.  ......++.++.|++|+|.++....   .. .... -..++|+.|.+. +|   .+.. ..
T Consensus       142 ~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~l~~L~~L~Ls-~N---~l~~-l~  213 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSDNPGLGERGLM-AALCPHKFPAIQNLALR-NT---GMET-PT  213 (310)
T ss_dssp             TBCSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCSCTTCHHHHHH-TTSCTTSSCCCCSCBCC-SS---CCCC-HH
T ss_pred             hhccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCCCCCccchhhh-HHHhhhcCCCCCEEECC-CC---CCCc-hH
Confidence            358899999999 8775  2334556789999999999974211   00 0011 134789999998 77   3310 01


Q ss_pred             E----EEEecCCceEEEEeccccccEE---eeCC---CCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccce
Q 041388          250 M----LTITAPKLESLEIYSDLLGSFV---MHDL---HSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIM  319 (440)
Q Consensus       250 ~----l~~~~p~L~~L~~~~~~~~~~~---~~~~---~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~  319 (440)
                      .    +.-..++|++|.++++......   +..+   ++|+.+++.......   .+   ..+   .++++.|.++.+.+
T Consensus       214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~---lp---~~~---~~~L~~L~Ls~N~l  284 (310)
T 4glp_A          214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ---VP---KGL---PAKLRVLDLSSNRL  284 (310)
T ss_dssp             HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS---CC---SCC---CSCCSCEECCSCCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc---hh---hhh---cCCCCEEECCCCcC
Confidence            1    1123589999999887654331   3333   688888886544321   11   111   27899999998877


Q ss_pred             eEee---ecccccccc
Q 041388          320 SSVE---LHRNGGRTD  332 (440)
Q Consensus       320 ~~~~---~f~~L~~L~  332 (440)
                      ..++   .+++|+.|+
T Consensus       285 ~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          285 NRAPQPDELPEVDNLT  300 (310)
T ss_dssp             CSCCCTTSCCCCSCEE
T ss_pred             CCCchhhhCCCccEEE
Confidence            7655   445555555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.33  E-value=7.2e-05  Score=69.81  Aligned_cols=56  Identities=14%  Similarity=0.064  Sum_probs=28.3

Q ss_pred             CCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccce
Q 041388          256 PKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIM  319 (440)
Q Consensus       256 p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~  319 (440)
                      |+|++|.++++....+...-.++|+.+++.......        ...+..+++++.|.++.+.+
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~--------~~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR--------APQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS--------CCCTTSCCCCSCEECSSTTT
T ss_pred             CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC--------CchhhhCCCccEEECcCCCC
Confidence            466666665544333222222455555554333211        11235668888888877644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.26  E-value=0.00014  Score=73.71  Aligned_cols=174  Identities=13%  Similarity=0.067  Sum_probs=106.3

Q ss_pred             cCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          129 MREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       129 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ..+++.|++....  ...+|..++  ++|++|+|+ +..+...|  ..+++|++|+|. ..+. .  +.. +..  .|+.
T Consensus        58 ~~~L~~L~Ls~n~--L~~lp~~l~--~~L~~L~Ls-~N~l~~ip--~~l~~L~~L~Ls~N~l~-~--ip~-l~~--~L~~  124 (571)
T 3cvr_A           58 INQFSELQLNRLN--LSSLPDNLP--PQITVLEIT-QNALISLP--ELPASLEYLDACDNRLS-T--LPE-LPA--SLKH  124 (571)
T ss_dssp             HTTCSEEECCSSC--CSCCCSCCC--TTCSEEECC-SSCCSCCC--CCCTTCCEEECCSSCCS-C--CCC-CCT--TCCE
T ss_pred             cCCccEEEeCCCC--CCccCHhHc--CCCCEEECc-CCCCcccc--cccCCCCEEEccCCCCC-C--cch-hhc--CCCE
Confidence            3478888886432  234777664  789999999 44555554  457899999999 8776 2  333 322  9999


Q ss_pred             EEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEe
Q 041388          208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIM  287 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~  287 (440)
                      |.|.++....+  ..   ..++|+.|.+. ++   .+..    +....++|++|.++++....+.... ++|+.+++...
T Consensus       125 L~Ls~N~l~~l--p~---~l~~L~~L~Ls-~N---~l~~----lp~~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N  190 (571)
T 3cvr_A          125 LDVDNNQLTML--PE---LPALLEYINAD-NN---QLTM----LPELPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTN  190 (571)
T ss_dssp             EECCSSCCSCC--CC---CCTTCCEEECC-SS---CCSC----CCCCCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSS
T ss_pred             EECCCCcCCCC--CC---cCccccEEeCC-CC---ccCc----CCCcCCCcCEEECCCCCCCCcchhh-CCCCEEECcCC
Confidence            99999755444  22   56889999998 76   3321    1115689999999887644332211 67888777554


Q ss_pred             ecccccCCchhhhhhhcccccccEEEEeccceeEee----ecccccccc
Q 041388          288 HAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE----LHRNGGRTD  332 (440)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~  332 (440)
                      .... .... . ..+....+.++.|.++.+.+..++    .+++|+.|+
T Consensus       191 ~L~~-lp~~-~-~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~  236 (571)
T 3cvr_A          191 LLES-LPAV-P-VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTII  236 (571)
T ss_dssp             CCSS-CCCC-C---------CCEEEECCSSCCCCCCGGGGGSCTTEEEE
T ss_pred             CCCc-hhhH-H-HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEE
Confidence            3321 0000 0 011111223399999888777766    344444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.25  E-value=0.00015  Score=64.40  Aligned_cols=88  Identities=16%  Similarity=0.091  Sum_probs=49.6

Q ss_pred             eecCccccccccccEEEecCCccccCC-C-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVP-S-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP  221 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~  221 (440)
                      ..+|..+.  ++|++|+|.+ ..+... + ....+++|+.|+|. ..+.  ..-...+..++.|+.|+|.++....+. .
T Consensus        32 ~~ip~~~~--~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~  105 (229)
T 3e6j_A           32 ASVPAGIP--TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLP-S  105 (229)
T ss_dssp             SSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred             CccCCCCC--CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccC-h
Confidence            44555433  6788888884 333332 2 34567788888888 6664  112344567788888888776432220 0


Q ss_pred             cEEecccccceeEEEeec
Q 041388          222 NLIISSATLKTCKLIVRS  239 (440)
Q Consensus       222 ~l~i~~~~L~~L~i~~~~  239 (440)
                      ..--..++|+.|.+. ++
T Consensus       106 ~~~~~l~~L~~L~Ls-~N  122 (229)
T 3e6j_A          106 AVFDRLVHLKELFMC-CN  122 (229)
T ss_dssp             TTTTTCTTCCEEECC-SS
T ss_pred             hHhCcchhhCeEecc-CC
Confidence            000123567777776 54

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.25  E-value=0.00012  Score=71.78  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=35.3

Q ss_pred             CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388           24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNV   60 (440)
Q Consensus        24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l   60 (440)
                      .|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            6899999999999999999999999999999999963

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.23  E-value=0.00046  Score=69.92  Aligned_cols=175  Identities=13%  Similarity=0.077  Sum_probs=106.8

Q ss_pred             ceeeEEEEeeCCCC-hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388          103 KIGKFSLYCSRPTN-LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK  181 (440)
Q Consensus       103 ~v~~l~l~~~~~~~-~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~  181 (440)
                      .++.+.+....-.. +..+        ..+++.|++..+.  ...+|   ..+++|++|+|++ ..+...+.  -..+|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--------~~~L~~L~Ls~N~--l~~ip---~~l~~L~~L~Ls~-N~l~~ip~--l~~~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--------PPQITVLEITQNA--LISLP---ELPASLEYLDACD-NRLSTLPE--LPASLK  123 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--------CTTCSEEECCSSC--CSCCC---CCCTTCCEEECCS-SCCSCCCC--CCTTCC
T ss_pred             CccEEEeCCCCCCccCHhH--------cCCCCEEECcCCC--Ccccc---cccCCCCEEEccC-CCCCCcch--hhcCCC
Confidence            47777776543222 1111        2478999886432  23566   3478999999994 45544442  122899


Q ss_pred             eEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceE
Q 041388          182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLES  260 (440)
Q Consensus       182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~  260 (440)
                      .|+|. ..+. .  +..   .++.|+.|+|.++....+  ..   ..++|+.|.+. +|   .+.. ...  +. ++|++
T Consensus       124 ~L~Ls~N~l~-~--lp~---~l~~L~~L~Ls~N~l~~l--p~---~l~~L~~L~Ls-~N---~L~~-lp~--l~-~~L~~  184 (571)
T 3cvr_A          124 HLDVDNNQLT-M--LPE---LPALLEYINADNNQLTML--PE---LPTSLEVLSVR-NN---QLTF-LPE--LP-ESLEA  184 (571)
T ss_dssp             EEECCSSCCS-C--CCC---CCTTCCEEECCSSCCSCC--CC---CCTTCCEEECC-SS---CCSC-CCC--CC-TTCCE
T ss_pred             EEECCCCcCC-C--CCC---cCccccEEeCCCCccCcC--CC---cCCCcCEEECC-CC---CCCC-cch--hh-CCCCE
Confidence            99999 8776 2  322   689999999999754333  22   45799999998 77   3322 112  22 89999


Q ss_pred             EEEeccccccEEeeCCCCe-------eEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee
Q 041388          261 LEIYSDLLGSFVMHDLHSL-------KIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS  320 (440)
Q Consensus       261 L~~~~~~~~~~~~~~~~~L-------~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~  320 (440)
                      |.++++....+.. -.++|       +.+++......   ..+   .. +..+++++.|.|+.+.+.
T Consensus       185 L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~---~lp---~~-l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          185 LDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRIT---HIP---EN-ILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             EECCSSCCSSCCC-CC--------CCEEEECCSSCCC---CCC---GG-GGGSCTTEEEECCSSSCC
T ss_pred             EECcCCCCCchhh-HHHhhhcccccceEEecCCCcce---ecC---HH-HhcCCCCCEEEeeCCcCC
Confidence            9999876543322 11144       55555433221   111   22 334889999999888654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.17  E-value=8.1e-05  Score=76.40  Aligned_cols=57  Identities=21%  Similarity=0.187  Sum_probs=24.2

Q ss_pred             cccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          154 AACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +++|++|+|++ ..+.. ++ .+.++++|++|+|. ..+.  ..-...+.+++.|++|+|.++
T Consensus        75 l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~--~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           75 FPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             CTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC--EECGGGGTTCTTCCEEECTTS
T ss_pred             CCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCC--CCCHHHhcCCCCCCEEECCCC
Confidence            55555555552 22221 11 23344555555555 4433  111223444555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.16  E-value=0.00016  Score=63.10  Aligned_cols=88  Identities=18%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             eecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP  221 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~  221 (440)
                      ..+|..+  .++|++|+|.+ ..+...+  ....+++|++|+|. ..+.  ......+..++.|++|+|.++....+. .
T Consensus        20 ~~~p~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~   93 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLP-N   93 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred             cCCCCCC--CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccC-H
Confidence            3445433  34778888883 3443332  23467788888887 6655  222344567788888888776432220 0


Q ss_pred             cEEecccccceeEEEeec
Q 041388          222 NLIISSATLKTCKLIVRS  239 (440)
Q Consensus       222 ~l~i~~~~L~~L~i~~~~  239 (440)
                      ..--..++|+.|.+. ++
T Consensus        94 ~~~~~l~~L~~L~L~-~N  110 (208)
T 2o6s_A           94 GVFDKLTQLKELALN-TN  110 (208)
T ss_dssp             TTTTTCTTCCEEECC-SS
T ss_pred             hHhcCccCCCEEEcC-CC
Confidence            000123567777666 44

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.15  E-value=6.3e-05  Score=73.54  Aligned_cols=36  Identities=33%  Similarity=0.637  Sum_probs=34.7

Q ss_pred             CccCCCCChH----HHHHHhcCCCchhhhhhhccccchHH
Q 041388           24 ADRISSLPDS----VLCHILSYIPTKHVVATSVIAKRWKN   59 (440)
Q Consensus        24 ~D~is~LPd~----lL~~Ils~L~~~d~~rts~lsrrWr~   59 (440)
                      .|.|+.||+|    |+.+||+||+++++++++.|||+|++
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            6999999999    99999999999999999999999995

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.13  E-value=1.3e-05  Score=69.69  Aligned_cols=86  Identities=22%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             eecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcE
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNL  223 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l  223 (440)
                      ..+|..+..+++|++|+|. ...+...+....+++|+.|+|. ..+. +  +...+..+|.|+.|++.++....+  .  
T Consensus        38 ~~l~~~~~~l~~L~~L~ls-~n~l~~l~~~~~l~~L~~L~l~~n~l~-~--l~~~~~~~~~L~~L~L~~N~l~~l--~--  109 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALS-TNNIEKISSLSGMENLRILSLGRNLIK-K--IENLDAVADTLEELWISYNQIASL--S--  109 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECS-EEEESCCCCHHHHTTCCEEEEEEEEEC-S--CSSHHHHHHHCSEEEEEEEECCCH--H--
T ss_pred             hhhhHHHhcCCCCCEEECC-CCCCccccccccCCCCCEEECCCCCcc-c--ccchhhcCCcCCEEECcCCcCCcC--C--
Confidence            3444466667888888887 4445444445667888888888 7776 2  344556678888888888754222  1  


Q ss_pred             Ee-cccccceeEEEeec
Q 041388          224 II-SSATLKTCKLIVRS  239 (440)
Q Consensus       224 ~i-~~~~L~~L~i~~~~  239 (440)
                      .+ ..++|+.|.+. ++
T Consensus       110 ~~~~l~~L~~L~l~-~N  125 (198)
T 1ds9_A          110 GIEKLVNLRVLYMS-NN  125 (198)
T ss_dssp             HHHHHHHSSEEEES-EE
T ss_pred             ccccCCCCCEEECC-CC
Confidence            11 23667777776 55

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.11  E-value=0.00017  Score=60.92  Aligned_cols=82  Identities=7%  Similarity=-0.140  Sum_probs=59.2

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--Cccc----ccccceEEEE-EE-eCCCcchhhhhccC
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTC----FPCVKILSVR-LE-NPNKSVTENLFCSC  202 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~L~-~~-~~~~~~l~~lls~c  202 (440)
                      .+++|++..+.- ...--..+..|++|++|+|++|..+++..  ....    .++|++|+|+ |. ++ |.++..+ +.|
T Consensus        62 ~L~~LDLs~~~I-td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L-~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCI-MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIAL-HHF  138 (176)
T ss_dssp             CEEEEEEESCCC-CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHG-GGC
T ss_pred             eEeEEeCcCCCc-cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHH-hcC
Confidence            588888875431 12222335579999999999766676643  1112    3589999999 86 66 8888875 579


Q ss_pred             CCcceEEEeeeeC
Q 041388          203 PSLEELSVTCELH  215 (440)
Q Consensus       203 p~Le~L~L~~c~~  215 (440)
                      |.|+.|.|.+|..
T Consensus       139 ~~L~~L~L~~c~~  151 (176)
T 3e4g_A          139 RNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCEEEEESCTT
T ss_pred             CCCCEEECCCCCC
Confidence            9999999999953

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.07  E-value=2.8e-05  Score=64.06  Aligned_cols=79  Identities=15%  Similarity=0.060  Sum_probs=50.5

Q ss_pred             cccccEEEecCCcccc--C-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388          154 AACLKVLTLDSDFSIQ--V-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT  229 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~--~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~  229 (440)
                      .++|+.|++. +..+.  . ++....+++|+.|+|. +.+. +.   ..+..++.|+.|++.++...... ....-..++
T Consensus        16 ~~~l~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLD-NSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI---ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECT-TCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC---TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTT
T ss_pred             CccCeEEEcc-CCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc---hhhhcCCCCCEEECCCCcccchH-HHHhhhCCC
Confidence            4678999999 44554  3 3334678889999988 7776 22   55677888999988887542210 111112466


Q ss_pred             cceeEEEeec
Q 041388          230 LKTCKLIVRS  239 (440)
Q Consensus       230 L~~L~i~~~~  239 (440)
                      |+.|.+. +|
T Consensus        90 L~~L~ls-~N   98 (149)
T 2je0_A           90 LTHLNLS-GN   98 (149)
T ss_dssp             CCEEECT-TS
T ss_pred             CCEEECC-CC
Confidence            7777776 55

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.03  E-value=0.00074  Score=64.05  Aligned_cols=87  Identities=11%  Similarity=0.164  Sum_probs=50.0

Q ss_pred             eeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388          144 RVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP  220 (440)
Q Consensus       144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~  220 (440)
                      ...+|..+  .+++++|+|.++ .+.. ++ .+.++++|++|+|+ ..+. +..=...+.+++.|+++.+..+.  .+  
T Consensus        21 Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N--~l--   92 (350)
T 4ay9_X           21 VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKAN--NL--   92 (350)
T ss_dssp             CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEET--TC--
T ss_pred             CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCC--cc--
Confidence            34566554  357888888843 3433 32 35678888888888 6553 11112345677777776665542  12  


Q ss_pred             CcEE----ecccccceeEEEeec
Q 041388          221 PNLI----ISSATLKTCKLIVRS  239 (440)
Q Consensus       221 ~~l~----i~~~~L~~L~i~~~~  239 (440)
                      ..+.    -..++|+.|.+. ++
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~-~n  114 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLIS-NT  114 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEE-EE
T ss_pred             cccCchhhhhcccccccccc-cc
Confidence            2221    123678888887 65

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.91  E-value=0.00047  Score=68.00  Aligned_cols=167  Identities=14%  Similarity=0.085  Sum_probs=100.9

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      .++.|++..+.  ...+| .+..+++|++|++. ...+...+  ...++|+.|++. +.+. .  +.. +..++.|++|+
T Consensus       174 ~L~~L~L~~n~--l~~l~-~~~~l~~L~~L~l~-~N~l~~l~--~~~~~L~~L~l~~n~l~-~--lp~-~~~l~~L~~L~  243 (454)
T 1jl5_A          174 SLEFIAAGNNQ--LEELP-ELQNLPFLTAIYAD-NNSLKKLP--DLPLSLESIVAGNNILE-E--LPE-LQNLPFLTTIY  243 (454)
T ss_dssp             TCCEEECCSSC--CSSCC-CCTTCTTCCEEECC-SSCCSSCC--CCCTTCCEEECCSSCCS-S--CCC-CTTCTTCCEEE
T ss_pred             cccEEECcCCc--CCcCc-cccCCCCCCEEECC-CCcCCcCC--CCcCcccEEECcCCcCC-c--ccc-cCCCCCCCEEE
Confidence            67777665332  22355 46679999999999 44444433  123689999999 7765 2  222 66899999999


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEeec
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHA  289 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~  289 (440)
                      +.++....+  .   -..++|+.|.+. +|   .+.    .+....++|++|.++++....+. .-.++|+.+++.....
T Consensus       244 l~~N~l~~l--~---~~~~~L~~L~l~-~N---~l~----~l~~~~~~L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          244 ADNNLLKTL--P---DLPPSLEALNVR-DN---YLT----DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEI  309 (454)
T ss_dssp             CCSSCCSSC--C---SCCTTCCEEECC-SS---CCS----CCCCCCTTCCEEECCSSCCSEES-CCCTTCCEEECCSSCC
T ss_pred             CCCCcCCcc--c---ccccccCEEECC-CC---ccc----ccCcccCcCCEEECcCCccCccc-CcCCcCCEEECcCCcC
Confidence            998754333  1   123789999988 66   231    12122478888888876543321 1125677666643322


Q ss_pred             ccccCCchhhhhhhccc-ccccEEEEeccceeEee-ecccccccc
Q 041388          290 EWAQVDPYRAIQLLAGI-NSCKYLYLSAGIMSSVE-LHRNGGRTD  332 (440)
Q Consensus       290 ~~~~~~~~~~~~~l~~~-~~l~~L~l~~~~~~~~~-~f~~L~~L~  332 (440)
                      .          . +..+ ++++.|.++.+.+..++ .+.+|+.|+
T Consensus       310 ~----------~-i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~  343 (454)
T 1jl5_A          310 R----------S-LCDLPPSLEELNVSNNKLIELPALPPRLERLI  343 (454)
T ss_dssp             S----------E-ECCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             C----------c-ccCCcCcCCEEECCCCccccccccCCcCCEEE
Confidence            1          1 1122 47778887776655544 456666666

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.87  E-value=0.00041  Score=60.46  Aligned_cols=102  Identities=17%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      +++.|++....  ...+|...+ .+++|++|+|.+ ..+...+  ....+++|++|+|. ..+.  ......+..++.|+
T Consensus        29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           29 QTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQ--SLPNGVFDKLTQLK  103 (208)
T ss_dssp             TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             CCcEEEcCCCc--cCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCcCC--ccCHhHhcCccCCC
Confidence            44555543221  123444333 467777777773 3333322  13456677777777 5554  11223455667777


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      .|++.++....+. ...--..++|+.|.+. ++
T Consensus       104 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~-~N  134 (208)
T 2o6s_A          104 ELALNTNQLQSLP-DGVFDKLTQLKDLRLY-QN  134 (208)
T ss_dssp             EEECCSSCCCCCC-TTTTTTCTTCCEEECC-SS
T ss_pred             EEEcCCCcCcccC-HhHhccCCcCCEEECC-CC
Confidence            7777665332220 0000123556666665 44

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.82  E-value=0.0006  Score=60.12  Aligned_cols=56  Identities=14%  Similarity=0.201  Sum_probs=29.9

Q ss_pred             cccEEEecCCccccCC-C--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          156 CLKVLTLDSDFSIQVP-S--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       156 ~L~~L~L~~~~~l~~~-~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      .+++|+|.++ .+... +  ....+++|+.|+|. ..+.  ......+.+++.|++|+|.++.
T Consensus        33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCC--EECHHHhCCCCCCCEEECCCCc
Confidence            4566777633 23221 1  23456677777776 5544  1112345566777777776653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.81  E-value=0.0013  Score=67.29  Aligned_cols=131  Identities=18%  Similarity=0.236  Sum_probs=82.7

Q ss_pred             eeecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388          144 RVELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP  221 (440)
Q Consensus       144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~  221 (440)
                      ...+|..+.  +++++|+|+++..-..++ .+.++++|++|+|. +.+.  ..-...+.+++.|++|+|.++..     .
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~--~i~~~~f~~L~~L~~L~Ls~N~l-----~  113 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPI-----Q  113 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCC-----C
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC--CcChhHhcCCCCCCEEEccCCcC-----C
Confidence            345565432  478999999543323333 46789999999999 7765  11133567899999999998743     3


Q ss_pred             cEEe----cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE----EeeCCCCeeEEEEEEe
Q 041388          222 NLII----SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF----VMHDLHSLKIVKLDIM  287 (440)
Q Consensus       222 ~l~i----~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~----~~~~~~~L~~~~i~~~  287 (440)
                      .+..    ..++|+.|.+. +|   .+.......--..++|++|.++++.....    .+.++++|+.+++...
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls-~N---~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAV-ET---NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             EECGGGGTTCTTCCEEECT-TS---CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCHHHhcCCCCCCEEECC-CC---cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            3221    24789999998 76   23211111112368999999988654332    2356778888777543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.79  E-value=0.00011  Score=62.43  Aligned_cols=81  Identities=17%  Similarity=0.026  Sum_probs=42.7

Q ss_pred             cccccccEEEecCCccccCCCCcccc-cccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388          152 YSAACLKVLTLDSDFSIQVPSSGTCF-PCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT  229 (440)
Q Consensus       152 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~  229 (440)
                      ..+.+|+.|+|. +..+...+....+ ++|+.|+|. ..+. +  + ..+..++.|+.|.+.++....+. ..+.-..++
T Consensus        16 ~~~~~L~~L~l~-~n~l~~i~~~~~~~~~L~~L~Ls~N~l~-~--~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~   89 (176)
T 1a9n_A           16 TNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-K--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD   89 (176)
T ss_dssp             ECTTSCEEEECT-TSCCCSCCCGGGGTTCCSEEECCSSCCC-E--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred             CCcCCceEEEee-CCCCchhHHhhhcCCCCCEEECCCCCCC-c--c-cccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence            346677777777 3344443323333 377777777 6555 2  1 34556777777777775321110 000012356


Q ss_pred             cceeEEEeec
Q 041388          230 LKTCKLIVRS  239 (440)
Q Consensus       230 L~~L~i~~~~  239 (440)
                      |+.|.+. ++
T Consensus        90 L~~L~L~-~N   98 (176)
T 1a9n_A           90 LTELILT-NN   98 (176)
T ss_dssp             CCEEECC-SC
T ss_pred             CCEEECC-CC
Confidence            6666666 54

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.75  E-value=0.00052  Score=60.92  Aligned_cols=102  Identities=13%  Similarity=0.027  Sum_probs=59.4

Q ss_pred             ccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEE
Q 041388          157 LKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKL  235 (440)
Q Consensus       157 L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i  235 (440)
                      .+.++.. ...+...| ..-.++|+.|+|. ..+.  ......+..++.|+.|.|.++....+. ...--..++|+.|.+
T Consensus        21 ~~~v~c~-~~~l~~ip-~~~~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCR-SKRHASVP-AGIPTNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECT-TSCCSSCC-SCCCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred             CCEeEcc-CCCcCccC-CCCCCCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEEC
Confidence            4557776 55555555 3334899999999 8776  222455678999999999997542221 010113467888888


Q ss_pred             EeecccccccccccEEEEecCCceEEEEeccc
Q 041388          236 IVRSEDMLFREVDYMLTITAPKLESLEIYSDL  267 (440)
Q Consensus       236 ~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~  267 (440)
                      . ++   .+.......--..++|++|.++++.
T Consensus        96 s-~N---~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           96 G-TN---QLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             C-SS---CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-CC---cCCccChhHhCcchhhCeEeccCCc
Confidence            7 65   2211000001135677777776653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.74  E-value=0.00043  Score=61.03  Aligned_cols=85  Identities=11%  Similarity=0.082  Sum_probs=54.8

Q ss_pred             ccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccc
Q 041388          151 IYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSA  228 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~  228 (440)
                      +..+++|++|+|.++..-..++ ....+++|++|+|. ..+.  ......+..++.|++|.|.++....+.+.. --..+
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~  129 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE--NVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLS  129 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--CCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCT
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC--ccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCc
Confidence            4458899999999443222232 46678899999999 7776  223455778999999999886432220010 01236


Q ss_pred             ccceeEEEeec
Q 041388          229 TLKTCKLIVRS  239 (440)
Q Consensus       229 ~L~~L~i~~~~  239 (440)
                      +|+.|.+. ++
T Consensus       130 ~L~~L~L~-~N  139 (220)
T 2v70_A          130 SVRLLSLY-DN  139 (220)
T ss_dssp             TCSEEECT-TS
T ss_pred             cCCEEECC-CC
Confidence            77778776 55

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.72  E-value=0.00026  Score=60.03  Aligned_cols=100  Identities=17%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             CcEEEEEEEccCceeecCcccccc-ccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSA-ACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~-~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      ++++|++..+.  ...+|. +..+ ++|++|+|++ ..+...+....+++|++|+|. ..+. . .-..++..+|.|+.|
T Consensus        20 ~L~~L~l~~n~--l~~i~~-~~~~~~~L~~L~Ls~-N~l~~~~~l~~l~~L~~L~Ls~N~l~-~-~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           20 RDRELDLRGYK--IPVIEN-LGATLDQFDAIDFSD-NEIRKLDGFPLLRRLKTLLVNNNRIC-R-IGEGLDQALPDLTEL   93 (176)
T ss_dssp             SCEEEECTTSC--CCSCCC-GGGGTTCCSEEECCS-SCCCEECCCCCCSSCCEEECCSSCCC-E-ECSCHHHHCTTCCEE
T ss_pred             CceEEEeeCCC--CchhHH-hhhcCCCCCEEECCC-CCCCcccccccCCCCCEEECCCCccc-c-cCcchhhcCCCCCEE
Confidence            56666664321  223443 4444 4899999984 344433446678889999998 7765 2 123445788999999


Q ss_pred             EEeeeeCCCCCCCcE-Ee-cccccceeEEEeec
Q 041388          209 SVTCELHDDTPPPNL-II-SSATLKTCKLIVRS  239 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l-~i-~~~~L~~L~i~~~~  239 (440)
                      +|.++....+  ..+ .+ ..++|+.|.+. ++
T Consensus        94 ~L~~N~i~~~--~~~~~l~~l~~L~~L~l~-~N  123 (176)
T 1a9n_A           94 ILTNNSLVEL--GDLDPLASLKSLTYLCIL-RN  123 (176)
T ss_dssp             ECCSCCCCCG--GGGGGGGGCTTCCEEECC-SS
T ss_pred             ECCCCcCCcc--hhhHhhhcCCCCCEEEec-CC
Confidence            9988754322  211 11 34677777777 65

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.67  E-value=0.00059  Score=60.17  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ++++|++...  ....+|. .+..+++|++|+|+++..-.. +..+.++++|++|+|. ..+.  ..-..++.+++.|+.
T Consensus        33 ~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           33 TITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC--CCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC--ccCHhHccCCCCCCE
Confidence            5666665432  1233444 334478888888884332222 2345677888888888 7665  222345667888888


Q ss_pred             EEEeeeeCCCCCCCcEEe-cccccceeEEEeec
Q 041388          208 LSVTCELHDDTPPPNLII-SSATLKTCKLIVRS  239 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~  239 (440)
                      |.|.++....+  ..-.+ ..++|+.|.+. ++
T Consensus       109 L~L~~N~l~~~--~~~~~~~l~~L~~L~L~-~N  138 (220)
T 2v9t_B          109 LLLNANKINCL--RVDAFQDLHNLNLLSLY-DN  138 (220)
T ss_dssp             EECCSSCCCCC--CTTTTTTCTTCCEEECC-SS
T ss_pred             EECCCCCCCEe--CHHHcCCCCCCCEEECC-CC
Confidence            88888643222  10011 23677777776 55

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.67  E-value=0.0011  Score=65.25  Aligned_cols=171  Identities=15%  Similarity=0.102  Sum_probs=94.8

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .+++.|++..+.  ...+| .+..+++|++|++++ ..+...+  ..+++|++|++. ..+. .  +.. +..++.|+.|
T Consensus       131 ~~L~~L~L~~n~--l~~lp-~~~~l~~L~~L~l~~-N~l~~lp--~~~~~L~~L~L~~n~l~-~--l~~-~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNNQ--LEKLP-ELQNSSFLKIIDVDN-NSLKKLP--DLPPSLEFIAAGNNQLE-E--LPE-LQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSSC--CSSCC-CCTTCTTCCEEECCS-SCCSCCC--CCCTTCCEEECCSSCCS-S--CCC-CTTCTTCCEE
T ss_pred             CCCCEEECcCCC--CCCCc-ccCCCCCCCEEECCC-CcCcccC--CCcccccEEECcCCcCC-c--Ccc-ccCCCCCCEE
Confidence            366777664322  22355 356677888888873 3443332  123578888888 7665 2  222 5678888888


Q ss_pred             EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEee
Q 041388          209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMH  288 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~  288 (440)
                      .+.++....+     .-..++|+.|.+. +|   .+.. ... ....++|++|.++++....+. ...++|+.+++....
T Consensus       201 ~l~~N~l~~l-----~~~~~~L~~L~l~-~n---~l~~-lp~-~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          201 YADNNSLKKL-----PDLPLSLESIVAG-NN---ILEE-LPE-LQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNY  268 (454)
T ss_dssp             ECCSSCCSSC-----CCCCTTCCEEECC-SS---CCSS-CCC-CTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSC
T ss_pred             ECCCCcCCcC-----CCCcCcccEEECc-CC---cCCc-ccc-cCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCc
Confidence            8887643222     1123578888887 66   2211 111 124678888888776543321 224677777664433


Q ss_pred             cccccCCchhhhhhhcccccccEEEEeccceeEee-ecccccccc
Q 041388          289 AEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE-LHRNGGRTD  332 (440)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-~f~~L~~L~  332 (440)
                      ..          .+...+++++.|.++.+.+..+. ...+|+.|+
T Consensus       269 l~----------~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~  303 (454)
T 1jl5_A          269 LT----------DLPELPQSLTFLDVSENIFSGLSELPPNLYYLN  303 (454)
T ss_dssp             CS----------CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred             cc----------ccCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence            21          11123467777777766555443 223455444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.44  E-value=0.00085  Score=57.70  Aligned_cols=87  Identities=20%  Similarity=0.220  Sum_probs=48.0

Q ss_pred             eecCccccccccccEEEecCCccccC-CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQV-PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP  220 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~  220 (440)
                      ..+|..++.  +|++|.|.++ .+.. ++  ....+++|++|+|. ..+.  ......+.+.+.|++|+|.++....+  
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~--   93 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGENKIKEI--   93 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSCCCCEE--
T ss_pred             CcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCC--CcCHhHcCCcccCCEEECCCCcCCcc--
Confidence            445554433  7788888743 3433 22  14567788888888 6665  22234456678888888877532111  


Q ss_pred             CcEEe-cccccceeEEEeec
Q 041388          221 PNLII-SSATLKTCKLIVRS  239 (440)
Q Consensus       221 ~~l~i-~~~~L~~L~i~~~~  239 (440)
                      ..-.+ ..++|+.|.+. ++
T Consensus        94 ~~~~~~~l~~L~~L~L~-~N  112 (192)
T 1w8a_A           94 SNKMFLGLHQLKTLNLY-DN  112 (192)
T ss_dssp             CSSSSTTCTTCCEEECC-SS
T ss_pred             CHHHhcCCCCCCEEECC-CC
Confidence            00001 23566666666 44

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.37  E-value=0.00098  Score=57.41  Aligned_cols=56  Identities=11%  Similarity=0.158  Sum_probs=29.7

Q ss_pred             ccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          155 ACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ++|++|+|.+ ..+... .....+++|+.|+|. ..+. . .....+.+++.|++|+|.++
T Consensus        31 ~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~i~-~-i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           31 RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRIS-T-LSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCcCC-E-eCHhHccCCCCCCEEECCCC
Confidence            4566666663 233332 234456666666666 5554 1 11233455666666666664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.31  E-value=0.0015  Score=55.18  Aligned_cols=80  Identities=18%  Similarity=0.109  Sum_probs=41.1

Q ss_pred             ccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccc
Q 041388          155 ACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLK  231 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~  231 (440)
                      ++|++|+|.+ ..+...+  ....+++|++|+|. ..+.  ......+..++.|+.|++.++....+. ...--..++|+
T Consensus        28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCcEEEeCC-CcccEeCHHHhcCcccccEEECCCCcce--EeChhHccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence            5677777773 3333322  13456777777777 6554  112234456777777777765332220 00001235566


Q ss_pred             eeEEEeec
Q 041388          232 TCKLIVRS  239 (440)
Q Consensus       232 ~L~i~~~~  239 (440)
                      .|.+. ++
T Consensus       104 ~L~l~-~N  110 (177)
T 2o6r_A          104 ELALD-TN  110 (177)
T ss_dssp             EEECC-SS
T ss_pred             EEECc-CC
Confidence            66665 44

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.28  E-value=0.00042  Score=66.13  Aligned_cols=84  Identities=13%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             eecCccccccccccEEEecCCccccC-CC-Ccc-cccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQV-PS-SGT-CFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP  220 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~-~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~  220 (440)
                      ..+|..+.  +.++.|+|+++ .+.. ++ ... .+++|+.|+|. ..+.  ......+..++.|+.|+|.++..     
T Consensus        31 ~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l-----  100 (361)
T 2xot_A           31 PNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHL-----  100 (361)
T ss_dssp             SSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCC-----
T ss_pred             CccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcC-----
Confidence            34555433  45778888843 3333 22 223 67788888888 6654  11123456778888888877532     


Q ss_pred             CcEEe----cccccceeEEEeec
Q 041388          221 PNLII----SSATLKTCKLIVRS  239 (440)
Q Consensus       221 ~~l~i----~~~~L~~L~i~~~~  239 (440)
                      ..+..    ..++|+.|.+. ++
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~-~N  122 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLY-NN  122 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECC-SS
T ss_pred             CcCCHHHhCCCcCCCEEECC-CC
Confidence            22111    23567777776 54

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.18  E-value=9.5e-05  Score=70.97  Aligned_cols=41  Identities=15%  Similarity=0.083  Sum_probs=22.9

Q ss_pred             hhhcccccccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccCCCccccc
Q 041388          301 QLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       301 ~~l~~~~~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ..+...++++.|.|+.+.+.                 ......+...++.+|+|++|.
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~-----------------~~g~~~l~~~L~~~~~L~~L~  245 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAG-----------------DTAALALARAAREHPSLELLH  245 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCC-----------------HHHHHHHHHHHHHCSSCCEEE
T ss_pred             HHHhcCCCcCeEECCCCCCC-----------------HHHHHHHHHHHHhCCCCCEEe
Confidence            33455556666666554332                 233345556666667777766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.15  E-value=0.0017  Score=61.85  Aligned_cols=123  Identities=18%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             CcEEEEEEEccCceeecCcccc--ccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          131 EVGEIQLYLGQQSRVELPEAIY--SAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      .++.|++...  ....++...+  .+++|++|+|.++ .+.. ++ .+..+++|+.|+|. ..+.  ......+..++.|
T Consensus        40 ~l~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L  114 (361)
T 2xot_A           40 YTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFSDLQAL  114 (361)
T ss_dssp             TCSEEECCSS--CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTC
T ss_pred             CCCEEECCCC--CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCC--cCCHHHhCCCcCC
Confidence            4555555322  2334444444  6788999999843 3333 32 35678889999998 7665  2223456778899


Q ss_pred             ceEEEeeeeCCCCCCCcEE---e-cccccceeEEEeecccccccccccE-E--EEecCCceEEEEeccc
Q 041388          206 EELSVTCELHDDTPPPNLI---I-SSATLKTCKLIVRSEDMLFREVDYM-L--TITAPKLESLEIYSDL  267 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~l~---i-~~~~L~~L~i~~~~~~~~~~~~~~~-l--~~~~p~L~~L~~~~~~  267 (440)
                      +.|.|.++..     ..+.   + ..++|+.|.+. ++   .+...... +  ....++|+.|.++++.
T Consensus       115 ~~L~L~~N~i-----~~~~~~~~~~l~~L~~L~L~-~N---~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          115 EVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLS-QN---QISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CEEECCSSCC-----CEECTTTTTTCTTCCEEECC-SS---CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CEEECCCCcc-----cEECHHHhCCcccCCEEECC-CC---cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            9999888642     2211   1 23678888887 55   22110000 0  0235677777776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.59  E-value=0.0097  Score=51.03  Aligned_cols=79  Identities=20%  Similarity=0.115  Sum_probs=55.3

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ++++|++....  ...+|..+..+++|+.|+|++ ..+...+  .+.++++|++|+|. ..+. . .....+.+++.|+.
T Consensus        32 ~l~~L~L~~n~--i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~-i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           32 DVTELYLDGNQ--FTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLR-C-IPPRTFDGLKSLRL  106 (193)
T ss_dssp             TCCEEECCSSC--CCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-B-CCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCc--CchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCccC-E-eCHHHhCCCCCCCE
Confidence            67777765322  346776677799999999994 4444332  35678999999999 7766 2 22344678899999


Q ss_pred             EEEeeee
Q 041388          208 LSVTCEL  214 (440)
Q Consensus       208 L~L~~c~  214 (440)
                      |.|.++.
T Consensus       107 L~L~~N~  113 (193)
T 2wfh_A          107 LSLHGND  113 (193)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            9998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.59  E-value=0.0041  Score=63.03  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             cCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          147 LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       147 lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +|. +..+++|+.|+|+++.....|.....+++|+.|+|. ..+. .  +. -+..++.|+.|.|.++
T Consensus       456 lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~--lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          456 LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-N--VD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-C--CG-GGTTCSSCCEEECCSS
T ss_pred             CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-C--Cc-ccCCCCCCcEEECCCC
Confidence            444 445666666666632222222234455666666666 5554 2  22 3455666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.52  E-value=0.0038  Score=53.51  Aligned_cols=97  Identities=11%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             cEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-cccccceeEE
Q 041388          158 KVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSATLKTCKL  235 (440)
Q Consensus       158 ~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i  235 (440)
                      ++|++. ...+...| ..-+++|+.|.|. ..+. .-.-..++...+.|+.|+|.++....+  ..-.+ ..++|+.|.+
T Consensus        11 ~~l~~s-~~~l~~ip-~~~~~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCT-GRGLKEIP-RDIPLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECT-TSCCSSCC-SCCCTTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEEC
T ss_pred             CEEEcC-CCCcCcCc-cCCCCCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCc--CHhHcCCcccCCEEEC
Confidence            678888 55555555 2334589999999 8776 322233577899999999999743222  00011 2367888888


Q ss_pred             EeecccccccccccEEE----EecCCceEEEEeccc
Q 041388          236 IVRSEDMLFREVDYMLT----ITAPKLESLEIYSDL  267 (440)
Q Consensus       236 ~~~~~~~~~~~~~~~l~----~~~p~L~~L~~~~~~  267 (440)
                      . ++   .+    ..+.    -..++|++|.++++.
T Consensus        86 s-~N---~l----~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           86 G-EN---KI----KEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             C-SC---CC----CEECSSSSTTCTTCCEEECCSSC
T ss_pred             C-CC---cC----CccCHHHhcCCCCCCEEECCCCc
Confidence            7 65   22    1111    124677777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.47  E-value=0.011  Score=49.66  Aligned_cols=100  Identities=18%  Similarity=0.183  Sum_probs=59.6

Q ss_pred             CcEEEEEEEccCceeecCccc-cccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLGQQSRVELPEAI-YSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      ++++|++....  ...+|... ..+++|++|+|++ ..+...+  ....+++|+.|+|. ..+.  ......+..++.|+
T Consensus        29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           29 SATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKLQ--SLPNGVFDKLTQLK  103 (177)
T ss_dssp             TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             CCcEEEeCCCc--ccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCCCCcc--ccCHHHhhCCcccC
Confidence            56666664321  23455544 3588999999984 4444433  24578899999999 7766  22334567789999


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEE
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLI  236 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~  236 (440)
                      .|++.++....+. ...--..++|+.|.+.
T Consensus       104 ~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A          104 ELALDTNQLKSVP-DGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             EEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred             EEECcCCcceEeC-HHHhcCCcccCEEEec
Confidence            9999886432221 0000123556666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.29  E-value=0.0058  Score=57.23  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=54.5

Q ss_pred             cCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhccccccc-EEEEeccceeEee--ecccc
Q 041388          255 APKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCK-YLYLSAGIMSSVE--LHRNG  328 (440)
Q Consensus       255 ~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~-~L~l~~~~~~~~~--~f~~L  328 (440)
                      +++|+++.+.++....   ..+.++++|+++.+.....  ...     ...+.++++++ .+.+.. .+..+.  .|.++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~--~I~-----~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLK--TIG-----QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC  296 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCC--EEC-----TTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccc--eeh-----HHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence            6888888887643332   2356788888876632100  000     33457788888 888876 555555  56666


Q ss_pred             cccc--cccccchhHHHH-HHHhccCCCccccc
Q 041388          329 GRTD--RMASTANRAKKL-TELGKSCPAQEQFG  358 (440)
Q Consensus       329 ~~L~--~~~~~~~~~~~l-~~lL~~~p~L~~L~  358 (440)
                      ..|+  .+.  ......+ ...+..|++|+++.
T Consensus       297 ~~L~~l~l~--~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          297 DNLRYVLAT--GDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTEEEEEEC--SSCCCEECTTTTCTTCCCCEEE
T ss_pred             ccCCEEEeC--CCccCccchhhhcCCcchhhhc
Confidence            6665  332  1111111 12566788888775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.22  E-value=0.014  Score=49.05  Aligned_cols=65  Identities=12%  Similarity=0.113  Sum_probs=34.4

Q ss_pred             eecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ..+|..+.  ++|++|+|+++..-..++ ....+++|+.|+|. ..+. . .-..++..++.|+.|+|.++
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~-i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A-IPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSS
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-c-cChhHhCCcchhhEEECCCC
Confidence            34554443  567777777332222222 24456667777777 5554 1 11233456667777777664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.18  E-value=0.015  Score=48.70  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=33.8

Q ss_pred             eecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ..+|..++  ++|++|+|.++..-..++ ....+++|++|+|. ..+.  ..-...+...+.|+.|+|.+.
T Consensus        22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--VLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--ccChhhccCCCCCCEEECCCC
Confidence            34454432  566677776332222222 24456667777776 5554  112233456666777766664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.87  E-value=0.0042  Score=64.97  Aligned_cols=58  Identities=9%  Similarity=0.007  Sum_probs=25.2

Q ss_pred             ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          153 SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      .+++|+.|+|+++.....++....+++|+.|+|. ..+.   .+..-+..++.|+.|+|.++
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTTS
T ss_pred             cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcCC
Confidence            3455555555522222222223344555555555 4443   12222344555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.82  E-value=0.013  Score=59.31  Aligned_cols=82  Identities=21%  Similarity=0.243  Sum_probs=62.5

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .+++.|++..+.  ...+|..+..+++|+.|+|++ ..+...|....+++|+.|+|. ..+. .......+..++.|+.|
T Consensus       463 ~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~l~~l~~L~~L~Ls~N~l~-~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          463 LLVTHLDLSHNR--LRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             TTCCEEECCSSC--CCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEE
T ss_pred             ccCcEeecCccc--ccccchhhhcCCCCCEEECCC-CCCCCCcccCCCCCCcEEECCCCCCC-CCCCcHHHhcCCCCCEE
Confidence            378888885432  347899888999999999994 445444457789999999999 8877 32214567889999999


Q ss_pred             EEeeeeC
Q 041388          209 SVTCELH  215 (440)
Q Consensus       209 ~L~~c~~  215 (440)
                      .|.++..
T Consensus       539 ~L~~N~l  545 (567)
T 1dce_A          539 NLQGNSL  545 (567)
T ss_dssp             ECTTSGG
T ss_pred             EecCCcC
Confidence            9998743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.44  E-value=0.0092  Score=62.41  Aligned_cols=100  Identities=13%  Similarity=0.096  Sum_probs=68.9

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL  208 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L  208 (440)
                      .++.|++...  ....+|..++.+++|++|+|+++ .+.. |.....+++|+.|+|+ ..+.   .+..-+..++.|++|
T Consensus       225 ~L~~L~Ls~n--~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          225 LWHALDLSNL--QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT---SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCEEECTTS--CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS---SCCSSGGGGTTCSEE
T ss_pred             CCcEEECCCC--CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC---ccChhhcCCCCCCEE
Confidence            5666666432  23478888889999999999944 4444 3346678999999999 7776   233446788999999


Q ss_pred             EEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          209 SVTCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      .|.++....++ .. --..++|+.|.+. ++
T Consensus       299 ~L~~N~l~~lp-~~-~~~l~~L~~L~L~-~N  326 (727)
T 4b8c_D          299 YFFDNMVTTLP-WE-FGNLCNLQFLGVE-GN  326 (727)
T ss_dssp             ECCSSCCCCCC-SS-TTSCTTCCCEECT-TS
T ss_pred             ECCCCCCCccC-hh-hhcCCCccEEeCC-CC
Confidence            99987543331 11 1124788889887 66

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=94.42  E-value=0.01  Score=50.97  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=69.2

Q ss_pred             CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCC-cccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSS-GTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ..++.|++..+.  ...+| .+..+++|++|+|+ ...+...+. ...+++|+.|+|. ..+. +  +. -+..++.|+.
T Consensus        48 ~~L~~L~ls~n~--l~~l~-~~~~l~~L~~L~l~-~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~--l~-~~~~l~~L~~  119 (198)
T 1ds9_A           48 KACKHLALSTNN--IEKIS-SLSGMENLRILSLG-RNLIKKIENLDAVADTLEELWISYNQIA-S--LS-GIEKLVNLRV  119 (198)
T ss_dssp             TTCSEEECSEEE--ESCCC-CHHHHTTCCEEEEE-EEEECSCSSHHHHHHHCSEEEEEEEECC-C--HH-HHHHHHHSSE
T ss_pred             CCCCEEECCCCC--Ccccc-ccccCCCCCEEECC-CCCcccccchhhcCCcCCEEECcCCcCC-c--CC-ccccCCCCCE
Confidence            478888885432  23366 66779999999999 555555442 3356899999999 9887 3  33 3678899999


Q ss_pred             EEEeeeeCCCCCCCcE-Ee-cccccceeEEEeec
Q 041388          208 LSVTCELHDDTPPPNL-II-SSATLKTCKLIVRS  239 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l-~i-~~~~L~~L~i~~~~  239 (440)
                      |++.++....+  ..+ .+ ..++|+.|.+. ++
T Consensus       120 L~l~~N~i~~~--~~~~~l~~l~~L~~L~l~-~N  150 (198)
T 1ds9_A          120 LYMSNNKITNW--GEIDKLAALDKLEDLLLA-GN  150 (198)
T ss_dssp             EEESEEECCCH--HHHHHHTTTTTCSEEEEC-SC
T ss_pred             EECCCCcCCch--hHHHHHhcCCCCCEEEec-CC
Confidence            99999865332  111 11 34789999998 76

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.15  E-value=0.019  Score=53.96  Aligned_cols=88  Identities=15%  Similarity=0.110  Sum_probs=51.7

Q ss_pred             eeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388          144 RVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP  220 (440)
Q Consensus       144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~  220 (440)
                      ...+|. +..+++|+.|+|.+.-.+.. ++ .+..+++|+.|+|. ..+.  ......+..++.|+.|+|.+.....+.+
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            345777 66678888888873123322 32 35567888888888 6665  2233456678888888888754322210


Q ss_pred             CcEEecccccceeEEE
Q 041388          221 PNLIISSATLKTCKLI  236 (440)
Q Consensus       221 ~~l~i~~~~L~~L~i~  236 (440)
                      ..  ....+|+.|.+.
T Consensus        98 ~~--~~~~~L~~l~l~  111 (347)
T 2ifg_A           98 KT--VQGLSLQELVLS  111 (347)
T ss_dssp             TT--TCSCCCCEEECC
T ss_pred             HH--cccCCceEEEee
Confidence            11  112237777776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=92.87  E-value=0.0021  Score=61.50  Aligned_cols=58  Identities=10%  Similarity=0.099  Sum_probs=29.2

Q ss_pred             ccccEEEecCCccccCCC---CcccccccceEEEE-EEeCCCcchhh---hh-ccCCCcceEEEeeee
Q 041388          155 ACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSVTEN---LF-CSCPSLEELSVTCEL  214 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~l~~---ll-s~cp~Le~L~L~~c~  214 (440)
                      ++|++|+|+ .+.+.+..   ....+++|++|+|. +.+. +.+...   .+ ..++.|++|+|.+|.
T Consensus       101 ~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~~L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          101 HALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRDLLLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             SCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred             CCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHHHHHhcCCccceeeCCCCC
Confidence            466666666 33332211   12234566666666 6555 333222   22 346667777776663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.80  E-value=0.095  Score=50.46  Aligned_cols=61  Identities=13%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             cCccccccccccEEEecCCccccCCCCcccccccceEEEE--EEeCCCcchhhhhccCCCcceEEEee
Q 041388          147 LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LENPNKSVTENLFCSCPSLEELSVTC  212 (440)
Q Consensus       147 lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~Le~L~L~~  212 (440)
                      ++...|...+|+.+.|..+...-....+.+ .+|+.+.|.  +..-.+    ..+.+|+.|+.+.+..
T Consensus       127 I~~~aF~~~~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~  189 (401)
T 4fdw_A          127 IPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSK  189 (401)
T ss_dssp             ECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEECCTTCCEECS----STTTTCTTCCEEECTT
T ss_pred             ehHhhcccCCccEEEeCCCccEECHHhcCC-CCceEEEeCCCccEehH----HHhhCcccCCeeecCC
Confidence            334444433688888774422111111223 357776665  221112    2355788888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=92.47  E-value=0.027  Score=47.82  Aligned_cols=55  Identities=20%  Similarity=0.048  Sum_probs=28.1

Q ss_pred             cccccEEEecCCccccCCC------CcccccccceEEEE-EEeCCCcc---hhhhhccCCCcceEEE
Q 041388          154 AACLKVLTLDSDFSIQVPS------SGTCFPCVKILSVR-LENPNKSV---TENLFCSCPSLEELSV  210 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~L~-~~~~~~~~---l~~lls~cp~Le~L~L  210 (440)
                      +++|++|+|+ ...+.+..      .....++|++|+|. +.+. +.+   +...+..++.|++|+|
T Consensus        64 ~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~-~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           64 NTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS-GSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-HHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC-HHHHHHHHHHHHhCCCceEEEe
Confidence            4556666666 33333211      01123556666666 6655 333   3444455666777777

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.43  E-value=0.13  Score=49.41  Aligned_cols=30  Identities=10%  Similarity=0.106  Sum_probs=15.9

Q ss_pred             hhcccccccEEEEeccceeEee--ecccccccc
Q 041388          302 LLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD  332 (440)
Q Consensus       302 ~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~  332 (440)
                      .+.+|++|+.+.|.. .++.+.  .|.++..|+
T Consensus       295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            345666677666653 344444  454444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=92.08  E-value=0.13  Score=42.78  Aligned_cols=78  Identities=19%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      .++.|++...  ....++. .+...++|++|+|+++ .+.. ++ .+..+++|++|+|. ..+.  ......+..++.|+
T Consensus        31 ~l~~L~L~~N--~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~  105 (170)
T 3g39_A           31 TTQVLYLYDN--QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLK--SIPRGAFDNLKSLT  105 (170)
T ss_dssp             TCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             CCcEEEcCCC--cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccC--EeCHHHhcCCCCCC
Confidence            6667666432  2334433 4556899999999954 4444 33 24678999999999 7776  22234567889999


Q ss_pred             eEEEeee
Q 041388          207 ELSVTCE  213 (440)
Q Consensus       207 ~L~L~~c  213 (440)
                      .|.|.+.
T Consensus       106 ~L~L~~N  112 (170)
T 3g39_A          106 HIWLLNN  112 (170)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            9999885

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.84  E-value=0.034  Score=53.42  Aligned_cols=54  Identities=15%  Similarity=0.170  Sum_probs=26.6

Q ss_pred             cccccEEEecCCccccCCCCcccccccceEEEE--EEeCCCcchhhhhccCCCcceEEEe
Q 041388          154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LENPNKSVTENLFCSCPSLEELSVT  211 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~Le~L~L~  211 (440)
                      |.+|+.+.+.+....-....+.++++|+.+.+.  +..-.+    ..+..|+.|+.+.+.
T Consensus       161 c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~----~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          161 CESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRD----YCFAECILLENMEFP  216 (394)
T ss_dssp             CTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECT----TTTTTCTTCCBCCCC
T ss_pred             cCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCc----hhhccccccceeecC
Confidence            667777776533221111224455666666665  222112    234456666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=91.73  E-value=0.15  Score=42.61  Aligned_cols=80  Identities=14%  Similarity=0.083  Sum_probs=54.5

Q ss_pred             CCcEEEEEEEccCceeecC-ccccccccccEEEecCCccccCCC-C-cccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          130 REVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQVPS-S-GTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      .+++.|++....  ...++ ..+...++|++|+|+++ .+...+ . +..+++|++|+|. ..+.  ..-...+..++.|
T Consensus        33 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK--SIPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc--eeCHHHhccccCC
Confidence            367777775322  23443 34556899999999954 454433 2 3578999999999 7776  2223456788999


Q ss_pred             ceEEEeeee
Q 041388          206 EELSVTCEL  214 (440)
Q Consensus       206 e~L~L~~c~  214 (440)
                      +.|.|.+..
T Consensus       108 ~~L~L~~N~  116 (174)
T 2r9u_A          108 THIYLYNNP  116 (174)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            999998853

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=87.87  E-value=0.46  Score=44.01  Aligned_cols=18  Identities=17%  Similarity=0.397  Sum_probs=8.6

Q ss_pred             ecCccccc-cccccEEEec
Q 041388          146 ELPEAIYS-AACLKVLTLD  163 (440)
Q Consensus       146 ~lp~~l~~-~~~L~~L~L~  163 (440)
                      .+|...|. |.+|+.|.|.
T Consensus       240 ~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          240 TIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EECTTTTTTCTTCCEEECC
T ss_pred             eecHhhhhCCCCCCEEECC
Confidence            34444433 5555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=85.18  E-value=0.46  Score=44.29  Aligned_cols=79  Identities=15%  Similarity=0.047  Sum_probs=44.3

Q ss_pred             CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ++++|+|... .....+|. .+..+++|+.|+|+++..-..++ .+..+++|+.|+|. ..+. . .-..++...+ |+.
T Consensus        32 ~L~~L~l~~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~-~~~~~~~~~~-L~~  107 (347)
T 2ifg_A           32 NLTELYIENQ-QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S-LSWKTVQGLS-LQE  107 (347)
T ss_dssp             CCSEEECCSC-SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-C-CCSTTTCSCC-CCE
T ss_pred             CeeEEEccCC-CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-e-eCHHHcccCC-ceE
Confidence            4666666421 11234453 34457888888888543333333 34567888888888 6665 1 1122233333 888


Q ss_pred             EEEeee
Q 041388          208 LSVTCE  213 (440)
Q Consensus       208 L~L~~c  213 (440)
                      |.|.+.
T Consensus       108 l~l~~N  113 (347)
T 2ifg_A          108 LVLSGN  113 (347)
T ss_dssp             EECCSS
T ss_pred             EEeeCC
Confidence            888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=81.41  E-value=0.73  Score=38.72  Aligned_cols=111  Identities=8%  Similarity=-0.033  Sum_probs=59.3

Q ss_pred             hhhhcccccccEEEEecc-ceeEe-----e----ecccccccc-cccc-cchhHHHHHHHhccCCCccccc-cccC-C--
Q 041388          300 IQLLAGINSCKYLYLSAG-IMSSV-----E----LHRNGGRTD-RMAS-TANRAKKLTELGKSCPAQEQFG-WLES-D--  363 (440)
Q Consensus       300 ~~~l~~~~~l~~L~l~~~-~~~~~-----~----~f~~L~~L~-~~~~-~~~~~~~l~~lL~~~p~L~~L~-~~~~-~--  363 (440)
                      ...+...++++.|.|+.. .+..-     .    ...+|++|+ ..+. .......+...++..++|++|. ..+. +  
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344555566666666554 33221     1    234455555 3220 1234456777888888999988 4221 1  


Q ss_pred             --CCCcccc--ccceeEEEE--EeeecCcchHHHHHHHHhhccccceEEEEee
Q 041388          364 --FDVPHCL--VHTVKNIEI--KGVQGDEDERPLLKYLLQFAAAMEKMLMWAK  410 (440)
Q Consensus       364 --~~~~~c~--~~~L~~v~i--~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~  410 (440)
                        ....+.+  ..+|+++.+  .+-.-.......+.-.++..+.|+.+.+...
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence              1111222  246999998  5333233333334445566788999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-06
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.002

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRLCLR 76
          D I+SLP  +   I +Y+  + ++ +  +++ W  +     +L    +L + 
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW--KKLLIS 53

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNV 60
          D IS LP  +  ++LS++  K ++  +   + W+ +
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 28 SSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVPNLSFDDRL 73
           SLPD +L  I S +    ++  S + KRW         L+ D+ L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWY-------RLASDESL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.74
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.64
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.33
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.21
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.85
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.41
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.29
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.25
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.24
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.15
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.97
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.88
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.31
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	90.62
d2ifga3	156	High affinity nerve growth factor receptor, N-term	90.19
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	87.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	86.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	86.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	82.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	82.02

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.1e-10  Score=71.96  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=32.8

Q ss_pred             CCCCChHHHHHHhcCCCchhhhhhhccccchHHHh
Q 041388           27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVW   61 (440)
Q Consensus        27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw   61 (440)
                      ++.||+||+.+||++||.+|+++++.|||+|+++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            36899999999999999999999999999999865

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.8e-11  Score=108.75  Aligned_cols=132  Identities=17%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCC--CCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVP--SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE  207 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~  207 (440)
                      ++++|++..+.-....++..+..|++|++|+|. ++.+.+.  .....+++|++|+|+ +.-.++.++..++.+||.|++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~-~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE-GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECT-TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCccccccc-ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            566666643211111223333448888888888 4454432  123456788888888 653336777788888888888


Q ss_pred             EEEeeeeCCCCCCCcE----EecccccceeEEEeecccccccccccEEEEecCCceEEEEecc
Q 041388          208 LSVTCELHDDTPPPNL----IISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSD  266 (440)
Q Consensus       208 L~L~~c~~~~~~~~~l----~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~  266 (440)
                      |+|.+|.....  ..+    .-.+++|+.|.+. +|...-...+...+.-.+|+|++|+++++
T Consensus       126 L~ls~c~~~~~--~~~~~~~~~~~~~L~~L~l~-~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         126 LNLSWCFDFTE--KHVQVAVAHVSETITQLNLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             EECCCCTTCCH--HHHHHHHHHSCTTCCEEECC-SCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             ccccccccccc--ccchhhhcccccccchhhhc-ccccccccccccccccccccccccccccc
Confidence            88888743110  111    1124678888887 65211000111222334677777777654

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.4e-09  Score=79.08  Aligned_cols=38  Identities=24%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHh
Q 041388           24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVW   61 (440)
Q Consensus        24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw   61 (440)
                      .|.|+.||+||+.+||++|+++|+++++.|||+|+.+.
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999753

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=2.4e-09  Score=80.69  Aligned_cols=42  Identities=19%  Similarity=0.456  Sum_probs=37.8

Q ss_pred             CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHhccCC
Q 041388           24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVP   65 (440)
Q Consensus        24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~~~   65 (440)
                      .|.++.||+||+.+||++|+++|+++++.|||+|+++...-+
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~   44 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST   44 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
Confidence            589999999999999999999999999999999998654433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.5e-09  Score=98.55  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=30.4

Q ss_pred             ccccccEEEecCCccccCC---CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          153 SAACLKVLTLDSDFSIQVP---SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      ...+|++|+|+ ++.+...   .....+++|++|+|+ +.+. +..+.. +..||.|+.|++.+|.
T Consensus        44 ~~~~L~~LdLs-~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~-~~~~~~-l~~~~~L~~L~Ls~c~  106 (284)
T d2astb2          44 SPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNT-LAKNSNLVRLNLSGCS  106 (284)
T ss_dssp             CCBCCCEEECT-TCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHH-HTTCTTCSEEECTTCB
T ss_pred             cCCCCCEEECC-CCccCHHHHHHHHHhCCCcccccccccCCC-cHHHHH-HhcCCCCcCccccccc
Confidence            34566666666 3333221   113345666666666 6554 333333 3456666666666653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=7.1e-08  Score=82.28  Aligned_cols=18  Identities=28%  Similarity=0.351  Sum_probs=10.6

Q ss_pred             hcccccccEEEEecccee
Q 041388          303 LAGINSCKYLYLSAGIMS  320 (440)
Q Consensus       303 l~~~~~l~~L~l~~~~~~  320 (440)
                      +.++++++.|.++.+.+.
T Consensus       168 l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         168 LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCCCEEECCCCCCC
Confidence            455666666666655443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.21  E-value=9.3e-08  Score=83.27  Aligned_cols=58  Identities=14%  Similarity=0.051  Sum_probs=28.9

Q ss_pred             ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +..+++|++|++.+ ..+........+++|+.|.+. +.+. +  +. -+..++.|+.|.+.+|
T Consensus        59 l~~l~~L~~L~ls~-n~i~~~~~l~~l~~l~~l~~~~n~~~-~--i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          59 VQYLNNLIGLELKD-NQITDLAPLKNLTKITELELSGNPLK-N--VS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             GGGCTTCCEEECCS-SCCCCCGGGTTCCSCCEEECCSCCCS-C--CG-GGTTCTTCCEEECTTS
T ss_pred             HhcCCCCcEeecCC-ceeecccccccccccccccccccccc-c--cc-cccccccccccccccc
Confidence            44466666666663 233332224555666666665 4443 1  11 1345566666666554

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=8.6e-08  Score=74.26  Aligned_cols=37  Identities=38%  Similarity=0.696  Sum_probs=34.7

Q ss_pred             CccCCCCC----hHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388           24 ADRISSLP----DSVLCHILSYIPTKHVVATSVIAKRWKNV   60 (440)
Q Consensus        24 ~D~is~LP----d~lL~~Ils~L~~~d~~rts~lsrrWr~l   60 (440)
                      .|.|+.||    |||+.+|||||+.+|+++++.|||+|+.+
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58999999    59999999999999999999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.88  E-value=2e-06  Score=73.60  Aligned_cols=160  Identities=15%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      .+++|.+..+.  ...++ .+..+++|++|+|+ +..+...+....+++|+.|++. ..+. +  +. -+..+|.|+.|.
T Consensus        47 ~L~~L~l~~~~--i~~l~-~l~~l~~L~~L~L~-~n~i~~l~~~~~l~~L~~L~l~~n~i~-~--l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          47 SIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLN-GNKLTDIKPLANLKNLGWLFLDENKVK-D--LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             TCCEEECTTSC--CCCCT-TGGGCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCC-C--GG-GGTTCTTCCEEE
T ss_pred             CccEEECcCCC--CCCch-hHhhCCCCCEEeCC-CccccCccccccCcccccccccccccc-c--cc-cccccccccccc
Confidence            56666554321  12232 35568888888888 4455544435667888888888 7665 2  22 256788888888


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEee
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMH  288 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~  288 (440)
                      +.+|....+  .. -...+.++.+.+. .+   .+.. . ...-..++|+.+.++++....+ .+.++++|+++++....
T Consensus       119 l~~~~~~~~--~~-l~~l~~l~~l~~~-~n---~l~~-~-~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         119 LEHNGISDI--NG-LVHLPQLESLYLG-NN---KITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CTTSCCCCC--GG-GGGCTTCCEEECC-SS---CCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc--cc-ccccccccccccc-cc---cccc-c-ccccccccccccccccccccccccccCCCCCCEEECCCCC
Confidence            887643222  11 1123566777665 44   1210 0 0011246777777766543322 23455566655554332


Q ss_pred             cccccCCchhhhhhhcccccccEEEEe
Q 041388          289 AEWAQVDPYRAIQLLAGINSCKYLYLS  315 (440)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~l~~L~l~  315 (440)
                      ..    +    ...+.++++|+.|.|+
T Consensus       190 i~----~----l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         190 IS----D----LRALAGLKNLDVLELF  208 (210)
T ss_dssp             CC----B----CGGGTTCTTCSEEEEE
T ss_pred             CC----C----ChhhcCCCCCCEEEcc
Confidence            21    0    1224455566666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.87  E-value=3.2e-06  Score=73.14  Aligned_cols=179  Identities=9%  Similarity=0.039  Sum_probs=109.5

Q ss_pred             ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccc
Q 041388          153 SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLK  231 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~  231 (440)
                      .+.+|+.|.+. ++.+...+....+++|++|++. ..+.+-..    +..++.|+.|.+.++....+  ..+ -..++|+
T Consensus        39 ~l~~L~~L~l~-~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~n~~~~i--~~l-~~l~~L~  110 (227)
T d1h6ua2          39 DLDGITTLSAF-GTGVTTIEGVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNV--SAI-AGLQSIK  110 (227)
T ss_dssp             HHHTCCEEECT-TSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCC--GGG-TTCTTCC
T ss_pred             HcCCcCEEECC-CCCCCcchhHhcCCCCcEeecCCceeecccc----cccccccccccccccccccc--ccc-ccccccc
Confidence            46789999999 5566665556789999999999 77762111    67899999999988754333  221 1347888


Q ss_pred             eeEEEeecccccccccccEEEEecCCceEEEEecccccc-EEeeCCCCeeEEEEEEeecccccCCchhhhhhhccccccc
Q 041388          232 TCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS-FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCK  310 (440)
Q Consensus       232 ~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~  310 (440)
                      .+.+. .|.....    . -....+.+..+.+.+..... ..+.++++|+.+.+......    .    ...+.++++++
T Consensus       111 ~l~l~-~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~----~----~~~l~~l~~L~  176 (227)
T d1h6ua2         111 TLDLT-STQITDV----T-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS----D----LTPLANLSKLT  176 (227)
T ss_dssp             EEECT-TSCCCCC----G-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC----C----CGGGTTCTTCC
T ss_pred             ccccc-ccccccc----c-hhccccchhhhhchhhhhchhhhhccccccccccccccccc----c----chhhcccccce
Confidence            88887 6521111    0 01235667777776543322 23466777887776543321    1    22356788888


Q ss_pred             EEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388          311 YLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       311 ~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      .|.++.+.+..+.   .+++|++|+ ..+  .  ...+. -+..+++|+.|.
T Consensus       177 ~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N--~--lt~i~-~l~~l~~L~~L~  223 (227)
T d1h6ua2         177 TLKADDNKISDISPLASLPNLIEVHLKNN--Q--ISDVS-PLANTSNLFIVT  223 (227)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECTTS--C--CCBCG-GGTTCTTCCEEE
T ss_pred             ecccCCCccCCChhhcCCCCCCEEECcCC--c--CCCCc-ccccCCCCCEEE
Confidence            8888877666555   344555555 322  1  11122 267788888775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.7e-06  Score=75.59  Aligned_cols=48  Identities=10%  Similarity=-0.022  Sum_probs=29.4

Q ss_pred             hhhcccccccEEEEeccceeEee----ecccccccc-c---ccccchhHHHHHHHhc
Q 041388          301 QLLAGINSCKYLYLSAGIMSSVE----LHRNGGRTD-R---MASTANRAKKLTELGK  349 (440)
Q Consensus       301 ~~l~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~-~---~~~~~~~~~~l~~lL~  349 (440)
                      ..+..+++++.|.|+.+.+..++    ...+|+.|. .   +. ......++...++
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~-CdC~~~~l~~wl~  221 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL-CNCEILYFRRWLQ  221 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC-CSGGGHHHHHHHH
T ss_pred             cccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC-CCcchHHHHHHHH
Confidence            34567888899999888777765    334555555 2   22 2344555666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.84  E-value=2.3e-06  Score=73.27  Aligned_cols=145  Identities=20%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388          154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT  232 (440)
Q Consensus       154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~  232 (440)
                      ..+|++|.+. ...+...+....+++|++|+|. ..+. +  +.. ++.++.|+.|.+.++....+  .. --..++|+.
T Consensus        45 L~~L~~L~l~-~~~i~~l~~l~~l~~L~~L~L~~n~i~-~--l~~-~~~l~~L~~L~l~~n~i~~l--~~-l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIAN-NSDIKSVQGIQYLPNVTKLFLNGNKLT-D--IKP-LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECT-TSCCCCCTTGGGCTTCCEEECCSSCCC-C--CGG-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCE
T ss_pred             hcCccEEECc-CCCCCCchhHhhCCCCCEEeCCCcccc-C--ccc-cccCcccccccccccccccc--cc-ccccccccc
Confidence            5689999999 6666666556789999999999 8776 3  222 46789999999998754222  11 112478888


Q ss_pred             eEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccE
Q 041388          233 CKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKY  311 (440)
Q Consensus       233 L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~  311 (440)
                      |.+. +|.   ... ... ....++|+.+.++++..... ....+++|+.+.+......    +    ..-+..+++++.
T Consensus       117 L~l~-~~~---~~~-~~~-l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~----~----i~~l~~l~~L~~  182 (210)
T d1h6ta2         117 LSLE-HNG---ISD-ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS----D----IVPLAGLTKLQN  182 (210)
T ss_dssp             EECT-TSC---CCC-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC----C----CGGGTTCTTCCE
T ss_pred             cccc-ccc---ccc-ccc-cccccccccccccccccccccccccccccccccccccccc----c----cccccCCCCCCE
Confidence            8887 652   110 010 12346777777765543221 2334556665555333221    1    112345566666


Q ss_pred             EEEecccee
Q 041388          312 LYLSAGIMS  320 (440)
Q Consensus       312 L~l~~~~~~  320 (440)
                      |.++.+.+.
T Consensus       183 L~Ls~N~i~  191 (210)
T d1h6ta2         183 LYLSKNHIS  191 (210)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCCCC
Confidence            666655444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.78  E-value=5e-06  Score=75.61  Aligned_cols=105  Identities=13%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             CcEEEEEEEc-cCceeecCccccccccccEEEecCCccc--cCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLG-QQSRVELPEAIYSAACLKVLTLDSDFSI--QVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~-~~~~~~lp~~l~~~~~L~~L~L~~~~~l--~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      +|.+|++... ..+...+|..+..+++|++|+|.++-.+  ..|+....+++|++|+|+ ..+.  ......+..++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~--~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE--EECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccc--ccccccccchhhhc
Confidence            5777777643 2234678888888999999999742233  234456678899999999 7765  23344566788888


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      .+.+..+......+..+ -..+.|+.+.+. ++
T Consensus       129 ~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~-~n  159 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSI-SSLPNLVGITFD-GN  159 (313)
T ss_dssp             EEECCSSEEESCCCGGG-GGCTTCCEEECC-SS
T ss_pred             ccccccccccccCchhh-ccCcccceeecc-cc
Confidence            88887763211100111 123567777776 44

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.77  E-value=6.5e-06  Score=69.62  Aligned_cols=157  Identities=11%  Similarity=0.090  Sum_probs=97.4

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      ++++|++....  ...++ .+..+++|++|+|++ ..+...+...++++|++|.+. +.+. .  +. -+++++.|+.|.
T Consensus        41 ~l~~L~l~~~~--i~~l~-~l~~l~nL~~L~Ls~-N~l~~~~~l~~l~~L~~L~l~~n~~~-~--~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          41 QVTTLQADRLG--IKSID-GVEYLNNLTQINFSN-NQLTDITPLKNLTKLVDILMNNNQIA-D--IT-PLANLTNLTGLT  112 (199)
T ss_dssp             TCCEEECTTSC--CCCCT-TGGGCTTCCEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCC-C--CG-GGTTCTTCSEEE
T ss_pred             CCCEEECCCCC--CCCcc-ccccCCCcCcCcccc-ccccCcccccCCcccccccccccccc-c--cc-cccccccccccc
Confidence            67777664321  12232 355688999999994 455554446778899999998 7665 2  12 266889999999


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEee
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMH  288 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~  288 (440)
                      +.+|.....  .. .-..++|+.|.++ ++   .+.. ... ....++|++|.+.++....+ .+.++++|+.+++....
T Consensus       113 l~~~~~~~~--~~-~~~l~~L~~L~l~-~n---~l~~-~~~-l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         113 LFNNQITDI--DP-LKNLTNLNRLELS-SN---TISD-ISA-LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             CCSSCCCCC--GG-GTTCTTCSEEECC-SS---CCCC-CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc--cc-cchhhhhHHhhhh-hh---hhcc-ccc-ccccccccccccccccccCCccccCCCCCCEEECCCCC
Confidence            988754222  11 1134788888887 66   2211 111 12367899999887654443 36778999988886554


Q ss_pred             cccccCCchhhhhhhcccccccEE
Q 041388          289 AEWAQVDPYRAIQLLAGINSCKYL  312 (440)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~l~~L  312 (440)
                      ..    +    ...+.++++++.|
T Consensus       184 i~----~----i~~l~~L~~L~~L  199 (199)
T d2omxa2         184 VS----D----ISVLAKLTNLESL  199 (199)
T ss_dssp             CC----C----CGGGGGCTTCSEE
T ss_pred             CC----C----CccccCCCCCCcC
Confidence            32    1    2234566777664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.59  E-value=1.9e-05  Score=73.44  Aligned_cols=182  Identities=15%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             cccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccc
Q 041388          150 AIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSA  228 (440)
Q Consensus       150 ~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~  228 (440)
                      ....++++..|.+. ...+...+.....++|++|++. ..+. +  +. .+..++.|+.|.+.++...+.  .. .-..+
T Consensus       192 ~~~~l~~~~~l~l~-~n~i~~~~~~~~~~~L~~L~l~~n~l~-~--~~-~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~  263 (384)
T d2omza2         192 VLAKLTNLESLIAT-NNQISDITPLGILTNLDELSLNGNQLK-D--IG-TLASLTNLTDLDLANNQISNL--AP-LSGLT  263 (384)
T ss_dssp             GGGGCTTCSEEECC-SSCCCCCGGGGGCTTCCEEECCSSCCC-C--CG-GGGGCTTCSEEECCSSCCCCC--GG-GTTCT
T ss_pred             ccccccccceeecc-CCccCCCCcccccCCCCEEECCCCCCC-C--cc-hhhcccccchhccccCccCCC--Cc-ccccc
Confidence            34457788888888 4444443335566788888888 7665 2  11 356788888888888643322  11 11246


Q ss_pred             ccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388          229 TLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN  307 (440)
Q Consensus       229 ~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~  307 (440)
                      +|+.|.+. .+   .+.. ... ....+.++.+...++..... .+..+++++.+++......    +    ...+..++
T Consensus       264 ~L~~L~l~-~~---~l~~-~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~----~----l~~l~~l~  329 (384)
T d2omza2         264 KLTELKLG-AN---QISN-ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS----D----ISPVSSLT  329 (384)
T ss_dssp             TCSEEECC-SS---CCCC-CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS----C----CGGGGGCT
T ss_pred             cCCEeecc-Cc---ccCC-CCc-cccccccccccccccccccccccchhcccCeEECCCCCCC----C----CcccccCC
Confidence            78888776 54   1210 000 11245566666655433221 2345566666655433221    1    12256677


Q ss_pred             cccEEEEeccceeEeeecc---cccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388          308 SCKYLYLSAGIMSSVELHR---NGGRTD-RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       308 ~l~~L~l~~~~~~~~~~f~---~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      +++.|.++.+.+..+..+.   +|+.|+ ...  .  ...+.. +..+|+|+.|.
T Consensus       330 ~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N--~--l~~l~~-l~~l~~L~~L~  379 (384)
T d2omza2         330 KLQRLFFANNKVSDVSSLANLTNINWLSAGHN--Q--ISDLTP-LANLTRITQLG  379 (384)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCCEEECCSS--C--CCBCGG-GTTCTTCSEEE
T ss_pred             CCCEEECCCCCCCCChhHcCCCCCCEEECCCC--c--CCCChh-hccCCCCCEee
Confidence            8888888777665554333   444444 222  1  111222 56778888775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.51  E-value=1.9e-05  Score=73.46  Aligned_cols=182  Identities=14%  Similarity=0.104  Sum_probs=107.8

Q ss_pred             CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEE
Q 041388          173 SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYML  251 (440)
Q Consensus       173 ~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l  251 (440)
                      ....+++++.|.+. ..+.+-.    -...++.|++|.+.++....+  ..+ -..++|+.|.+. +|   .+.. ... 
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~----~~~~~~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~l~-~n---~l~~-~~~-  258 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDI--GTL-ASLTNLTDLDLA-NN---QISN-LAP-  258 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCC--GGG-GGCTTCSEEECC-SS---CCCC-CGG-
T ss_pred             ccccccccceeeccCCccCCCC----cccccCCCCEEECCCCCCCCc--chh-hcccccchhccc-cC---ccCC-CCc-
Confidence            35677889999988 7665211    145789999999998754333  211 134788999888 66   2211 111 


Q ss_pred             EEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee---eccc
Q 041388          252 TITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRN  327 (440)
Q Consensus       252 ~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~  327 (440)
                      .-..|+|++|.+++...... .+.+++.+..+.+......    .    ...+..+++++.|.++.+.+..+.   .+++
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~----~----~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~  330 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE----D----ISPISNLKNLTYLTLYFNNISDISPVSSLTK  330 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS----C----CGGGGGCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred             ccccccCCEeeccCcccCCCCccccccccccccccccccc----c----ccccchhcccCeEECCCCCCCCCcccccCCC
Confidence            12368899999976543322 2445666666555433221    1    233577888999999887766654   5566


Q ss_pred             ccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCC-ccccccceeEEEEE
Q 041388          328 GGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDV-PHCLVHTVKNIEIK  380 (440)
Q Consensus       328 L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~-~~c~~~~L~~v~i~  380 (440)
                      |+.|. ..+  ..  ..+. -+..+|+|++|. ..+.=... |-..+.+|+.+.+.
T Consensus       331 L~~L~L~~n--~l--~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~  381 (384)
T d2omza2         331 LQRLFFANN--KV--SDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN  381 (384)
T ss_dssp             CCEEECCSS--CC--CCCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred             CCEEECCCC--CC--CCCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCC
Confidence            66666 333  11  1122 256789999998 53221222 22334678887764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00026  Score=61.07  Aligned_cols=186  Identities=12%  Similarity=0.101  Sum_probs=94.9

Q ss_pred             CCcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccC--CCCcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388          130 REVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQV--PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL  205 (440)
Q Consensus       130 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L  205 (440)
                      ++++.|++...  ....+|...| .+++|++|+|+++.....  +..+.+++.+++|.+. ..-. .......+.++|.|
T Consensus        29 ~~l~~L~Ls~n--~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l-~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESC--CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC-CEECTTSEECCTTC
T ss_pred             CCCCEEECcCC--cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc-cccccccccccccc
Confidence            36777777532  2345666554 488888888885433322  2234566777887766 3211 12223446778888


Q ss_pred             ceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEe-----cCCceEEEEeccccccEEe--eCCCC
Q 041388          206 EELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTIT-----APKLESLEIYSDLLGSFVM--HDLHS  278 (440)
Q Consensus       206 e~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~-----~p~L~~L~~~~~~~~~~~~--~~~~~  278 (440)
                      +.|.+.++.....  .. .....+++.+.+. ......    ...+...     .+.++.|.+.+.....+..  .+.++
T Consensus       106 ~~l~l~~~~l~~~--~~-~~~~~~l~~l~~~-~~~n~~----l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~  177 (242)
T d1xwdc1         106 QYLLISNTGIKHL--PD-VHKIHSLQKVLLD-IQDNIN----IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ  177 (242)
T ss_dssp             CEEEEESCCCCSC--CC-CTTTCBSSCEEEE-EESCTT----CCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCC
T ss_pred             cccccchhhhccc--cc-ccccccccccccc-cccccc----cccccccccccccccceeeecccccccccccccccchh
Confidence            8888888643221  11 1122445555544 221000    1111111     2356666665543332211  12233


Q ss_pred             eeEEEEEEeecccccC-CchhhhhhhcccccccEEEEeccceeEee--ecccccccc
Q 041388          279 LKIVKLDIMHAEWAQV-DPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD  332 (440)
Q Consensus       279 L~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~  332 (440)
                      +.+...  .... ... .+   ...++++++++.|.|+.+.+..++  .|.+|++|+
T Consensus       178 l~~~~~--l~~n-~l~~l~---~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         178 LDELNL--SDNN-NLEELP---NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             EEEEEC--TTCT-TCCCCC---TTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             hhcccc--cccc-cccccc---HHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccc
Confidence            333211  1100 001 11   334678899999999888777665  577777776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=1e-05  Score=71.78  Aligned_cols=30  Identities=13%  Similarity=0.047  Sum_probs=16.4

Q ss_pred             ccceeEEEEEe--eecCcchHHHHHHHHhhcc
Q 041388          371 VHTVKNIEIKG--VQGDEDERPLLKYLLQFAA  400 (440)
Q Consensus       371 ~~~L~~v~i~~--~~~~~~~~~~~~~ll~~a~  400 (440)
                      ..+|+.+.+.|  +.+...-..+.+++-++..
T Consensus       194 ~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~~  225 (266)
T d1p9ag_         194 SHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE  225 (266)
T ss_dssp             TCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred             CCCCCEEEecCCCCCCCcchHHHHHHHHhccc
Confidence            45577777764  3344444455666654433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=5.7e-05  Score=67.32  Aligned_cols=13  Identities=15%  Similarity=0.018  Sum_probs=6.7

Q ss_pred             cccccccceEEEE
Q 041388          174 GTCFPCVKILSVR  186 (440)
Q Consensus       174 ~~~~~~L~~L~L~  186 (440)
                      +.++++|++|+++
T Consensus        52 f~~l~~L~~L~ls   64 (284)
T d1ozna_          52 FRACRNLTILWLH   64 (284)
T ss_dssp             TTTCTTCCEEECC
T ss_pred             hhccccccccccc
Confidence            3345555555555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.24  E-value=7.1e-05  Score=67.34  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=39.0

Q ss_pred             eecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      ..+|..++  +++++|+|.+ ..+...+  .+..+++|++|++. ..+. . -....+..++.|+.|.+.++.
T Consensus        23 ~~lP~~l~--~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~-i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          23 EKVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKIS-K-ISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             CSCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCC-C-BCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCCCCC--CCCCEEECcC-CcCCCcChhHhhcccccccccccccccc-c-cchhhhhCCCccCEecccCCc
Confidence            45565543  4677888873 3443332  24567778888777 6554 1 112345677788888877763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.21  E-value=0.00021  Score=64.39  Aligned_cols=108  Identities=10%  Similarity=-0.031  Sum_probs=69.0

Q ss_pred             ceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC-Ccccccccc
Q 041388          103 KIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVK  181 (440)
Q Consensus       103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~  181 (440)
                      .|..+.+..........+..-+.  .-..++.|++..+..-...+|..+..+++|++|+|.++.....++ ....++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~--~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHh--cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            57777776533221111111111  124899999975332233689999999999999999433333333 355678899


Q ss_pred             eEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      .+.+. ..+.  ..+..-+..++.|+.+.+.++.
T Consensus       129 ~l~l~~N~~~--~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         129 TLDFSYNALS--GTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEECCSSEEE--SCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccc--ccCchhhccCcccceeeccccc
Confidence            99999 6655  3344557889999999998863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.15  E-value=5.7e-05  Score=69.35  Aligned_cols=72  Identities=10%  Similarity=-0.032  Sum_probs=45.9

Q ss_pred             hHHHHHHHhccCCCccccc-cccC-C--------CCCccccccceeEEEEEeee-cCcchHHHHHHHHhhccccceEEEE
Q 041388          340 RAKKLTELGKSCPAQEQFG-WLES-D--------FDVPHCLVHTVKNIEIKGVQ-GDEDERPLLKYLLQFAAAMEKMLMW  408 (440)
Q Consensus       340 ~~~~l~~lL~~~p~L~~L~-~~~~-~--------~~~~~c~~~~L~~v~i~~~~-~~~~~~~~~~~ll~~a~~L~~m~i~  408 (440)
                      ....+...+..+|+|++|. ..|. +        .....+....|+++.+.+-. +.+....+++.+-.+.+.|+++.+.
T Consensus       231 g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             ccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECC
Confidence            3456778889999999988 4332 1        01112334568898887544 2233345666666688999999886


Q ss_pred             eec
Q 041388          409 AKA  411 (440)
Q Consensus       409 ~~~  411 (440)
                      ...
T Consensus       311 ~N~  313 (344)
T d2ca6a1         311 GNR  313 (344)
T ss_dssp             TSB
T ss_pred             CCc
Confidence            644

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=58.03  Aligned_cols=57  Identities=19%  Similarity=0.079  Sum_probs=33.8

Q ss_pred             cccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE-e-cccccceeEEEeec
Q 041388          174 GTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI-I-SSATLKTCKLIVRS  239 (440)
Q Consensus       174 ~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~-i-~~~~L~~L~i~~~~  239 (440)
                      ......|+.|+|+ ..++ .  +..+...++.|+.|+|.++..     ..+. + ..++|+.|.+. +|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~--i~~~~~~l~~L~~L~Ls~N~i-----~~l~~~~~l~~L~~L~ls-~N   73 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-V--IENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLLVN-NN   73 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-S--CCCGGGGTTCCSEEECCSSCC-----CEECCCCCCSSCCEEECC-SS
T ss_pred             ccCcCcCcEEECCCCCCC-c--cCccccccccCCEEECCCCCC-----CccCCcccCcchhhhhcc-cc
Confidence            3445667888888 6665 2  234556778888888877532     2221 1 23566666666 54

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00026  Score=62.78  Aligned_cols=178  Identities=19%  Similarity=0.149  Sum_probs=87.5

Q ss_pred             CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCC-C-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388          131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVP-S-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE  206 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le  206 (440)
                      +++.|++..  .....+|...+ .+++|++|++++ ..+... + ....++.++.+... .... ...-...+++++.|+
T Consensus        33 ~~~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~ls~-n~l~~i~~~~~~~~~~~~~l~~~~~~~~-~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          33 ASQRIFLHG--NRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQL-RSVDPATFHGLGRLH  108 (284)
T ss_dssp             TCSEEECTT--SCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTC-CCCCTTTTTTCTTCC
T ss_pred             CCCEEECcC--CcCCCCCHHHhhcccccccccccc-cccccccccccccccccccccccccccc-ccccchhhcccccCC
Confidence            566666532  22345665443 478888888883 333222 1 23345666666554 2111 111133466788888


Q ss_pred             eEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE---EeeCCCCeeEEE
Q 041388          207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF---VMHDLHSLKIVK  283 (440)
Q Consensus       207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~  283 (440)
                      +|.+.++....+. ....-..+.|+.+.+. .+   .+.......--..++|+.|.+.++....+   .+.++++|+.+.
T Consensus       109 ~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~-~N---~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         109 TLHLDRCGLQELG-PGLFRGLAALQYLYLQ-DN---ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             EEECTTSCCCCCC-TTTTTTCTTCCEEECC-SS---CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EEecCCccccccc-ccccchhcccchhhhc-cc---cccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            8888876432220 1111123567777776 44   22110000001246777777776543322   134456666655


Q ss_pred             EEEeecccccCCchhhhhhhcccccccEEEEeccceeEee
Q 041388          284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE  323 (440)
Q Consensus       284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~  323 (440)
                      +.......  ..    ...+.++++++.|.++.+.+..+.
T Consensus       184 l~~N~l~~--i~----~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         184 LHQNRVAH--VH----PHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             CCSSCCCE--EC----TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhhccccc--cC----hhHhhhhhhccccccccccccccc
Confidence            54332210  00    123455667777777666555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.88  E-value=1.7e-05  Score=66.94  Aligned_cols=100  Identities=20%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             cEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEE
Q 041388          132 VGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSV  210 (440)
Q Consensus       132 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L  210 (440)
                      .+++++.........+|..+...++|++|+|+ ...+...+....+++|++|+|. +.+. +  +..+...++.|+.|.+
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls-~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~--i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKISSLSGMENLRILSLGRNLIK-K--IENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECS-EEEESCCCCHHHHTTCCEEECCEEEEC-S--CSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECc-ccCCCCcccccCCccccChhhcccccc-c--cccccccccccccccc
Confidence            44555543333345566667778889999998 5556665546678889999999 8876 2  3344555678899988


Q ss_pred             eeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          211 TCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       211 ~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      .++....+  .. ....++|+.|.+. ++
T Consensus       101 ~~N~i~~l--~~-~~~l~~L~~L~L~-~N  125 (198)
T d1m9la_         101 SYNQIASL--SG-IEKLVNLRVLYMS-NN  125 (198)
T ss_dssp             SEEECCCH--HH-HHHHHHSSEEEES-EE
T ss_pred             cccccccc--cc-ccccccccccccc-cc
Confidence            88753221  11 1123677777777 55

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.00042  Score=53.16  Aligned_cols=79  Identities=14%  Similarity=0.205  Sum_probs=43.7

Q ss_pred             ccccccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcE-E-ec
Q 041388          151 IYSAACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNL-I-IS  226 (440)
Q Consensus       151 l~~~~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l-~-i~  226 (440)
                      +..+++|++|++++ -.+... +....+++|++|++. ..+. +  +.. +..+|.|+.|.+.++....+  ..+ . -.
T Consensus        16 l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~i~-~--l~~-~~~l~~L~~L~l~~N~i~~~--~~~~~l~~   88 (124)
T d1dcea3          16 LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALE-N--VDG-VANLPRLQELLLCNNRLQQS--AAIQPLVS   88 (124)
T ss_dssp             GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCC-C--CGG-GTTCSSCCEEECCSSCCCSS--STTGGGGG
T ss_pred             cccCCCCCEEECCC-CccCcchhhhhhhhccccccccccccc-c--cCc-cccccccCeEECCCCccCCC--CCchhhcC
Confidence            45566777777773 333333 234556777777777 6655 2  122 45677777777776543222  111 1 12


Q ss_pred             ccccceeEEE
Q 041388          227 SATLKTCKLI  236 (440)
Q Consensus       227 ~~~L~~L~i~  236 (440)
                      .++|+.|.+.
T Consensus        89 ~~~L~~L~l~   98 (124)
T d1dcea3          89 CPRLVLLNLQ   98 (124)
T ss_dssp             CTTCCEEECT
T ss_pred             CCCCCEEECC
Confidence            3667777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0003  Score=56.84  Aligned_cols=104  Identities=19%  Similarity=0.066  Sum_probs=49.0

Q ss_pred             ccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccc
Q 041388          153 SAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATL  230 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L  230 (440)
                      .+.+|+.|+|. +..+...+ ....++.|+.|+|+ ..+. .  +. -++.+|.|++|.+.+|....+. ..+.-..++|
T Consensus        16 n~~~lr~L~L~-~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~--l~-~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L   89 (162)
T d1a9na_          16 NAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-K--LD-GFPLLRRLKTLLVNNNRICRIG-EGLDQALPDL   89 (162)
T ss_dssp             CTTSCEEEECT-TSCCCSCCCGGGGTTCCSEEECCSSCCC-E--EC-CCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTC
T ss_pred             CcCcCcEEECC-CCCCCccCccccccccCCEEECCCCCCC-c--cC-CcccCcchhhhhcccccccCCC-cccccccccc
Confidence            34556666666 33343333 22345666666666 5444 1  11 1455666666666665321110 0001123566


Q ss_pred             ceeEEEeecccccccccccEE--EEecCCceEEEEeccc
Q 041388          231 KTCKLIVRSEDMLFREVDYML--TITAPKLESLEIYSDL  267 (440)
Q Consensus       231 ~~L~i~~~~~~~~~~~~~~~l--~~~~p~L~~L~~~~~~  267 (440)
                      +.|.+. ++   .+.. ...+  --..|+|++|.+.++.
T Consensus        90 ~~L~L~-~N---~i~~-~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          90 TELILT-NN---SLVE-LGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CEEECC-SC---CCCC-GGGGGGGGGCTTCCEEECCSSG
T ss_pred             ccceec-cc---cccc-cccccccccccccchhhcCCCc
Confidence            666666 54   1110 0000  1135777777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0059  Score=52.04  Aligned_cols=72  Identities=13%  Similarity=0.177  Sum_probs=31.0

Q ss_pred             ccccEEEEeccceeEee-ecccccccc--cccccchhHHHH-HHHhccCCCccccc-cccCCCCCccccccceeEEEE
Q 041388          307 NSCKYLYLSAGIMSSVE-LHRNGGRTD--RMASTANRAKKL-TELGKSCPAQEQFG-WLESDFDVPHCLVHTVKNIEI  379 (440)
Q Consensus       307 ~~l~~L~l~~~~~~~~~-~f~~L~~L~--~~~~~~~~~~~l-~~lL~~~p~L~~L~-~~~~~~~~~~c~~~~L~~v~i  379 (440)
                      ..++.|.++.+.+..+. ...+..++.  ... .......+ ...++.+|+|+.|. ....=...|...+.+|..++.
T Consensus       153 ~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l-~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         153 FESVILWLNKNGIQEIHNCAFNGTQLDELNLS-DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             SSCEEEECCSSCCCEECTTTTTTCCEEEEECT-TCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             ccceeeecccccccccccccccchhhhccccc-cccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            36666777666665554 211222222  111 01111112 12456678888877 311112333333455554443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.59  E-value=0.00011  Score=61.75  Aligned_cols=136  Identities=15%  Similarity=0.113  Sum_probs=78.4

Q ss_pred             cccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE
Q 041388          174 GTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT  252 (440)
Q Consensus       174 ~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~  252 (440)
                      ...+++|++|+|. ..+. +  +. -+++++.|+.|+|.++....+  ..+.-..++|+.|.+. ++   .+.. ... .
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~--i~-~l~~l~~L~~L~Ls~N~i~~i--~~~~~~~~~L~~L~l~-~N---~i~~-l~~-~  111 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-K--IS-SLSGMENLRILSLGRNLIKKI--ENLDAVADTLEELWIS-YN---QIAS-LSG-I  111 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-C--CC-CHHHHTTCCEEECCEEEECSC--SSHHHHHHHCCEEECS-EE---ECCC-HHH-H
T ss_pred             HhcccccceeECcccCCC-C--cc-cccCCccccChhhcccccccc--cccccccccccccccc-cc---cccc-ccc-c
Confidence            4568899999999 8887 3  22 267899999999999865333  2222223578888887 55   2210 000 1


Q ss_pred             EecCCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEeeecccccccc
Q 041388          253 ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTD  332 (440)
Q Consensus       253 ~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~f~~L~~L~  332 (440)
                      ...++|+.|.++++....+                          .....+..+++++.|.++.+.+..           
T Consensus       112 ~~l~~L~~L~L~~N~i~~~--------------------------~~~~~l~~l~~L~~L~L~~N~l~~-----------  154 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNW--------------------------GEIDKLAALDKLEDLLLAGNPLYN-----------  154 (198)
T ss_dssp             HHHHHSSEEEESEEECCCH--------------------------HHHHHHTTTTTCSEEEECSSHHHH-----------
T ss_pred             cccccccccccccchhccc--------------------------cccccccCCCccceeecCCCcccc-----------
Confidence            1245666666655421110                          002456778888888887764321           


Q ss_pred             cccccchhHHHHHHHhccCCCccccc
Q 041388          333 RMASTANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       333 ~~~~~~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ...........-..++..+|+|+.|.
T Consensus       155 ~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         155 DYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CcccccchhhHHHHHHHHCCCcCEeC
Confidence            00000111222345677889988887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.40  E-value=0.00067  Score=51.96  Aligned_cols=51  Identities=18%  Similarity=0.071  Sum_probs=25.0

Q ss_pred             EEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          159 VLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       159 ~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      .|+|+ ...+...+....+++|++|++. ..+. +  +..-++.++.|+.|.+.+.
T Consensus         2 ~L~Ls-~n~l~~l~~l~~l~~L~~L~ls~N~l~-~--lp~~~~~l~~L~~L~l~~N   53 (124)
T d1dcea3           2 VLHLA-HKDLTVLCHLEQLLLVTHLDLSHNRLR-A--LPPALAALRCLEVLQASDN   53 (124)
T ss_dssp             EEECT-TSCCSSCCCGGGGTTCCEEECCSSCCC-C--CCGGGGGCTTCCEEECCSS
T ss_pred             EEEcC-CCCCCCCcccccCCCCCEEECCCCccC-c--chhhhhhhhcccccccccc
Confidence            45555 3333333334455566666666 5444 1  2222445566666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.83  E-value=0.0013  Score=54.42  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=37.5

Q ss_pred             eecCccccccccccEEEecCCccccC--CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388          145 VELPEAIYSAACLKVLTLDSDFSIQV--PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       145 ~~lp~~l~~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c  213 (440)
                      ..+|..++  +++++|+|.++.....  ...+..+++|+.|+|. ..+.  ......+...+.|++|+|.+.
T Consensus        21 ~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~--~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSC
T ss_pred             CccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc--cccccccccccccceeeeccc
Confidence            34555443  5677788774322111  2234567777777777 5554  222344556777777777775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.06  E-value=0.0037  Score=51.49  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=57.8

Q ss_pred             ccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEE
Q 041388          157 LKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKL  235 (440)
Q Consensus       157 L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i  235 (440)
                      .+.++.+ ...+...|.. =++++++|+|+ ..++ ...-...+.+.+.|+.|.|.+....... ....-..++|+.|.+
T Consensus        10 ~~~v~Cs-~~~L~~iP~~-lp~~l~~L~Ls~N~i~-~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCT-GRGLKEIPRD-IPLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECT-TSCCSSCCSC-CCTTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred             CCEEEEe-CCCcCccCCC-CCCCCCEEEeCCCCCc-ccccccccCCCceEeeeecccccccccc-ccccccccccceeee
Confidence            4566666 4455555422 24689999999 8776 3233455678999999999886432210 011112367888887


Q ss_pred             EeecccccccccccEEE----EecCCceEEEEecccc
Q 041388          236 IVRSEDMLFREVDYMLT----ITAPKLESLEIYSDLL  268 (440)
Q Consensus       236 ~~~~~~~~~~~~~~~l~----~~~p~L~~L~~~~~~~  268 (440)
                      + ++   .+    ..+.    ...|+|++|.++++..
T Consensus        86 s-~N---~l----~~l~~~~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          86 G-EN---KI----KEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             C-SC---CC----CEECSSSSTTCTTCCEEECCSSCC
T ss_pred             c-cc---cc----cccCHHHHhCCCcccccccCCccc
Confidence            7 55   22    1211    1246677777766543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0054  Score=48.68  Aligned_cols=69  Identities=14%  Similarity=0.128  Sum_probs=43.3

Q ss_pred             eeecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388          144 RVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL  214 (440)
Q Consensus       144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~  214 (440)
                      ....|..+...++|++|++.++-.+...+  .+.++++|+.|+|. ..+.  ..-...+.+.+.|++|+|.+..
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~--~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECCSSC
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC--CcccccccccccccceeccCCC
Confidence            34566666677888888886332233222  35567788888888 6654  1113446677888888887754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.89  E-value=0.015  Score=51.39  Aligned_cols=57  Identities=11%  Similarity=0.018  Sum_probs=25.4

Q ss_pred             CcEEEEEEEccCceeecCccc-cccccccEEEecCCccccCCC-CcccccccceEEEE-EEe
Q 041388          131 EVGEIQLYLGQQSRVELPEAI-YSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LEN  189 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~  189 (440)
                      +++.|++...  ....+|... ..+++|++|++.++.....++ .+..++.|++|++. ..+
T Consensus        32 ~l~~L~Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          32 DTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             TCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCEEECcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            4455544321  233444432 235566666665322222222 23345556666665 443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.31  E-value=0.0036  Score=56.72  Aligned_cols=16  Identities=19%  Similarity=0.046  Sum_probs=7.8

Q ss_pred             hhcccccccEEEEecc
Q 041388          302 LLAGINSCKYLYLSAG  317 (440)
Q Consensus       302 ~l~~~~~l~~L~l~~~  317 (440)
                      .+..+++++.|.|+.+
T Consensus       238 ~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDC  253 (344)
T ss_dssp             HGGGCTTCCEEECTTC
T ss_pred             cccccccchhhhhhcC
Confidence            3444555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.46  E-value=0.068  Score=47.46  Aligned_cols=91  Identities=23%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388          131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS  209 (440)
Q Consensus       131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~  209 (440)
                      ++++|++...  ....+|..   .++|++|+|+ +..+...|  ..+.+|++|.+. ..+..   +..   --+.|++|+
T Consensus        39 ~l~~LdLs~~--~L~~lp~~---~~~L~~L~Ls-~N~l~~lp--~~~~~L~~L~l~~n~l~~---l~~---lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNL--GLSSLPEL---PPHLESLVAS-CNSLTELP--ELPQSLKSLLVDNNNLKA---LSD---LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTS--CCSCCCSC---CTTCSEEECC-SSCCSSCC--CCCTTCCEEECCSSCCSC---CCS---CCTTCCEEE
T ss_pred             CCCEEEeCCC--CCCCCCCC---CCCCCEEECC-CCCCcccc--cchhhhhhhhhhhcccch---hhh---hcccccccc
Confidence            5566655321  22345542   3567777777 44555443  124577777777 54431   111   124577777


Q ss_pred             EeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388          210 VTCELHDDTPPPNLIISSATLKTCKLIVRS  239 (440)
Q Consensus       210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~  239 (440)
                      +.++....+  ... -..+.|+.|.+. ++
T Consensus       105 L~~n~l~~l--p~~-~~l~~L~~L~l~-~~  130 (353)
T d1jl5a_         105 VSNNQLEKL--PEL-QNSSFLKIIDVD-NN  130 (353)
T ss_dssp             CCSSCCSSC--CCC-TTCTTCCEEECC-SS
T ss_pred             ccccccccc--cch-hhhccceeeccc-cc
Confidence            776643222  111 123567777666 44

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.0039  Score=58.34  Aligned_cols=36  Identities=6%  Similarity=0.035  Sum_probs=15.8

Q ss_pred             eeEEEEEeeecCcchHHHHHHHHhhccccceEEEEe
Q 041388          374 VKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWA  409 (440)
Q Consensus       374 L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~  409 (440)
                      |+.+.+.+..-....+.-+...+...+.|+.+.+..
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  406 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  406 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCC
Confidence            555555443322222222223344455566555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.035  Score=43.69  Aligned_cols=102  Identities=10%  Similarity=-0.039  Sum_probs=57.3

Q ss_pred             ccccccEEEecCCccccCCCCcccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe----c
Q 041388          153 SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII----S  226 (440)
Q Consensus       153 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i----~  226 (440)
                      .|.....++..+......+....++++|+.|++. .. +.  ..-...+.+.+.|+.|.|.++..     ..+.-    .
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l-----~~i~~~~f~~   78 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGL-----RFVAPDAFHF   78 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCC-----CEECTTGGGS
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCcccc--ccCchhhccccccCcceeecccc-----CCcccccccc
Confidence            3555666777743333444445567889999987 43 33  11123467889999999998643     32221    2


Q ss_pred             ccccceeEEEeecccccccccccEEEEecCCceEEEEecc
Q 041388          227 SATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSD  266 (440)
Q Consensus       227 ~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~  266 (440)
                      .++|+.|.+. ++   .+.. ...-.+..++|++|.++++
T Consensus        79 l~~L~~L~Ls-~N---~l~~-l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          79 TPRLSRLNLS-FN---ALES-LSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CSCCCEEECC-SS---CCSC-CCSTTTCSCCCCEEECCSS
T ss_pred             cccccceecc-CC---CCcc-cChhhhccccccccccCCC
Confidence            3677888777 55   2210 0000122345666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=0.13  Score=47.22  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=9.9

Q ss_pred             hhhhcccccccEEEEecc
Q 041388          300 IQLLAGINSCKYLYLSAG  317 (440)
Q Consensus       300 ~~~l~~~~~l~~L~l~~~  317 (440)
                      .++++.+++++.|.|+..
T Consensus        20 ~~l~~~l~~l~~L~L~~~   37 (460)
T d1z7xw1          20 AELLPLLQQCQVVRLDDC   37 (460)
T ss_dssp             HHHHHHHTTCSEEEEESS
T ss_pred             HHHHHhCCCCCEEEeCCC
Confidence            344555566666666544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=86.57  E-value=0.24  Score=43.58  Aligned_cols=93  Identities=11%  Similarity=-0.004  Sum_probs=60.7

Q ss_pred             ccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccccee
Q 041388          155 ACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTC  233 (440)
Q Consensus       155 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L  233 (440)
                      .+|++|+|+ ...++..|.  ..++|++|+|+ ..++ +  +.   ...+.|+.|.+.++....+     .--.+.|+.|
T Consensus        38 ~~l~~LdLs-~~~L~~lp~--~~~~L~~L~Ls~N~l~-~--lp---~~~~~L~~L~l~~n~l~~l-----~~lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELN-NLGLSSLPE--LPPHLESLVASCNSLT-E--LP---ELPQSLKSLLVDNNNLKAL-----SDLPPLLEYL  103 (353)
T ss_dssp             HTCSEEECT-TSCCSCCCS--CCTTCSEEECCSSCCS-S--CC---CCCTTCCEEECCSSCCSCC-----CSCCTTCCEE
T ss_pred             cCCCEEEeC-CCCCCCCCC--CCCCCCEEECCCCCCc-c--cc---cchhhhhhhhhhhcccchh-----hhhccccccc
Confidence            579999999 556665542  35799999999 7665 2  11   2356899999988654333     2223579999


Q ss_pred             EEEeecccccccccccEEEEecCCceEEEEeccc
Q 041388          234 KLIVRSEDMLFREVDYMLTITAPKLESLEIYSDL  267 (440)
Q Consensus       234 ~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~  267 (440)
                      ++. ++   .+.. ... ....++|+.|.+.+..
T Consensus       104 ~L~-~n---~l~~-lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         104 GVS-NN---QLEK-LPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             ECC-SS---CCSS-CCC-CTTCTTCCEEECCSSC
T ss_pred             ccc-cc---cccc-ccc-hhhhccceeecccccc
Confidence            998 66   2311 111 1246788999887654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.04  E-value=0.097  Score=41.24  Aligned_cols=58  Identities=12%  Similarity=0.115  Sum_probs=39.7

Q ss_pred             hhhcccccccEEEEeccceeEee-----ecccccccc-c---cccc-chhHHHHHHHhccCCCccccc
Q 041388          301 QLLAGINSCKYLYLSAGIMSSVE-----LHRNGGRTD-R---MAST-ANRAKKLTELGKSCPAQEQFG  358 (440)
Q Consensus       301 ~~l~~~~~l~~L~l~~~~~~~~~-----~f~~L~~L~-~---~~~~-~~~~~~l~~lL~~~p~L~~L~  358 (440)
                      ..++.+++++.|.++.+.+..+.     ...+|+.|. .   +... .........+++.+|+|+.|.
T Consensus        85 ~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          85 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            34567888999999888877665     334556655 2   1111 223456788999999999997

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.74  E-value=0.038  Score=44.00  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=17.5

Q ss_pred             cccceEEEE-EEeCCC---cchhhhhccCCCcceEEEeee
Q 041388          178 PCVKILSVR-LENPNK---SVTENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       178 ~~L~~L~L~-~~~~~~---~~l~~lls~cp~Le~L~L~~c  213 (440)
                      +.|++|+|+ +.+. +   ..+...+..++.|++|.|.+|
T Consensus        44 ~~L~~L~Ls~n~l~-~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          44 KHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             SCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             Cccceeeccccccc-hhHHHHHhhhhhhcccccceeeehh
Confidence            445555555 4444 2   223444455566666666555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.02  E-value=0.25  Score=38.87  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=20.4

Q ss_pred             ccccceEEEE-EEeCCCcc---hhhhhccCCCcceEEEeee
Q 041388          177 FPCVKILSVR-LENPNKSV---TENLFCSCPSLEELSVTCE  213 (440)
Q Consensus       177 ~~~L~~L~L~-~~~~~~~~---l~~lls~cp~Le~L~L~~c  213 (440)
                      .+.|++|+|. +.+. +.+   +...+..++.|++|.|.++
T Consensus        71 n~~L~~L~L~~n~i~-~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          71 SPSLRVLNVESNFLT-PELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSSCCEEECCSSBCC-HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccccceeeehhhcc-hHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3556666666 5555 333   2334555666777777654