Citrus Sinensis ID: 041395

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
MGPVVAVVPPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY
cccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccEEEEccccccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHcccccEEcEEEEEEEEcccccEEEEEccccccEEEEEEEEcccccEEEEEEEcccccccEEcccccccEEEEccccccccEEEEEEEccccEEEEEEEEccccccccEEEcccccc
ccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEcccccccccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEcccccccEEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccEEccccccccccccccEcccEEEEEEEEccccEEEEcccccccccEcEEEccccccc
mgpvvavvpprFWHFFLILSMGFVGINGQVNRWLNAHATyygadqspstlggacgydntihagfgvNTAAVSGVlfrggqacgACYQLmcdyradpkwclRHATVTLtatnfcppnnhggwcdpprqhfdmsmpAFFRIARQGNEGIVPILYKRVackrrggvhftlkgqsNFNMVMFsnvggsgdlkgawvrgsRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFnvvpsswsfgqtfssrnqfy
MGPVVAVVPPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHftlkgqsnfNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNvvpsswsfgqtfssrnqfy
MGPVVAVVPPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY
***VVAVVPPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWG************RLSFKLTLVDGRTQLFFNVVPSSWSFGQ*********
********PPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY
MGPVVAVVPPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY
MGPVVAVVPPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSR**F*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGPVVAVVPPRFWHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
Q9LDJ3252 Expansin-A12 OS=Arabidops yes no 0.929 0.948 0.673 6e-94
Q9ZSI1255 Putative expansin-A17 OS= no no 0.918 0.925 0.5 8e-70
Q7XWU8261 Expansin-A1 OS=Oryza sati yes no 0.863 0.850 0.515 4e-66
Q9LNU3252 Expansin-A11 OS=Arabidops no no 0.856 0.873 0.519 5e-66
Q9FMA0255 Expansin-A14 OS=Arabidops no no 0.902 0.909 0.491 1e-65
O22874253 Expansin-A8 OS=Arabidopsi no no 0.910 0.924 0.491 2e-65
Q4PR39263 Expansin-A29 OS=Oryza sat no no 0.867 0.847 0.526 1e-64
O80622253 Expansin-A15 OS=Arabidops no no 0.867 0.881 0.527 6e-64
Q9C554250 Expansin-A1 OS=Arabidopsi no no 0.902 0.928 0.522 7e-64
Q4PR42278 Expansin-A24 OS=Oryza sat no no 0.867 0.802 0.493 4e-63
>sp|Q9LDJ3|EXP12_ARATH Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1 Back     alignment and function desciption
 Score =  343 bits (880), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 161/239 (67%), Positives = 190/239 (79%)

Query: 17  LILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLF 76
           +IL +  + +    N W+ AHATYYG + SP++LGGACGYDN  HAGFG +TAA+SG LF
Sbjct: 11  VILLVSTLSVGMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELF 70

Query: 77  RGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAF 136
           R G++CG CYQ+ CD+ ADPKWCLR A VT+TATNFCP NN+ GWC+ PR HFDMS PAF
Sbjct: 71  RSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNNNGWCNLPRHHFDMSSPAF 130

Query: 137 FRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSR 196
           FRIAR+GNEGIVP+ Y+RV CKRRGGV FT++GQ NFNMVM SNVGG G ++   VRGS+
Sbjct: 131 FRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSK 190

Query: 197 TKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQ 255
            KTW+ M RNWGANW SS DLR QRLSFK+TL D +TQ F NVVPSSW FGQTFSSR +
Sbjct: 191 GKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGR 249
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZSI1|EXP17_ARATH Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=3 SV=1 Back     alignment and function description
>sp|Q7XWU8|EXPA1_ORYSJ Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LNU3|EXP11_ARATH Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1 Back     alignment and function description
>sp|O22874|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1 Back     alignment and function description
>sp|Q4PR39|EXP29_ORYSJ Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2 Back     alignment and function description
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2 Back     alignment and function description
>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1 Back     alignment and function description
>sp|Q4PR42|EXP24_ORYSJ Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
255573347258 Alpha-expansin 12 precursor, putative [R 0.996 0.992 0.758 1e-113
225461409264 PREDICTED: expansin-A12-like [Vitis vini 0.953 0.928 0.772 1e-112
302143026257 unnamed protein product [Vitis vinifera] 0.953 0.953 0.772 1e-112
224128165238 hypothetical protein POPTRDRAFT_263513 [ 0.926 1.0 0.784 1e-111
356514760257 PREDICTED: expansin-A12-like [Glycine ma 0.996 0.996 0.724 1e-108
21314551256 alpha-expansin precursor [Gossypium hirs 0.996 1.0 0.712 1e-107
351630255255 expansin [Breonia chinensis] gi|35163028 0.953 0.960 0.722 1e-105
449431836254 PREDICTED: expansin-A12-like [Cucumis sa 0.945 0.956 0.717 1e-103
297830112252 ATEXPA12 [Arabidopsis lyrata subsp. lyra 0.929 0.948 0.677 7e-93
15232568252 expansin-A12 [Arabidopsis thaliana] gi|2 0.929 0.948 0.673 4e-92
>gi|255573347|ref|XP_002527600.1| Alpha-expansin 12 precursor, putative [Ricinus communis] gi|223533017|gb|EEF34781.1| Alpha-expansin 12 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/257 (75%), Positives = 222/257 (86%), Gaps = 1/257 (0%)

Query: 1   MGPVVAVVPPRFWHFFLILSMGF-VGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNT 59
           MGP+V  +P     +F+ +   F  GI GQ N W NAHAT+YGA+Q+PSTLGGACGYDNT
Sbjct: 1   MGPIVVNLPSVLCLYFMYVLGTFPEGIAGQGNGWTNAHATFYGANQNPSTLGGACGYDNT 60

Query: 60  IHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHG 119
            HAGFGV+T A+SG LFR G+ACGACYQ+MCDY+ADPKWCLR   VT+TATNFCPPNN+G
Sbjct: 61  FHAGFGVHTTALSGALFRNGEACGACYQVMCDYKADPKWCLRCGVVTITATNFCPPNNNG 120

Query: 120 GWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFS 179
           GWCDPPR HFDMSMPAF RIARQGNEGIVP+LY+RVACKRRGGVHFTL+GQSNFN+VM +
Sbjct: 121 GWCDPPRHHFDMSMPAFLRIARQGNEGIVPVLYRRVACKRRGGVHFTLRGQSNFNLVMVT 180

Query: 180 NVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNV 239
           NVGGSGD++ AWVRGSRT+TW+AM RNWGANW S+VDLR Q LSFKLTLVDG+T  FFNV
Sbjct: 181 NVGGSGDIRAAWVRGSRTRTWVAMHRNWGANWQSNVDLRSQTLSFKLTLVDGKTLQFFNV 240

Query: 240 VPSSWSFGQTFSSRNQF 256
           VPS+W FGQTFSSRNQF
Sbjct: 241 VPSTWRFGQTFSSRNQF 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461409|ref|XP_002282241.1| PREDICTED: expansin-A12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143026|emb|CBI20321.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128165|ref|XP_002329097.1| hypothetical protein POPTRDRAFT_263513 [Populus trichocarpa] gi|222869766|gb|EEF06897.1| hypothetical protein POPTRDRAFT_263513 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514760|ref|XP_003526071.1| PREDICTED: expansin-A12-like [Glycine max] Back     alignment and taxonomy information
>gi|21314551|gb|AAM47001.1|AF512543_1 alpha-expansin precursor [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|351630255|gb|AEQ55282.1| expansin [Breonia chinensis] gi|351630285|gb|AEQ55297.1| expansin [Breonia chinensis] Back     alignment and taxonomy information
>gi|449431836|ref|XP_004133706.1| PREDICTED: expansin-A12-like [Cucumis sativus] gi|449478151|ref|XP_004155235.1| PREDICTED: expansin-A12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297830112|ref|XP_002882938.1| ATEXPA12 [Arabidopsis lyrata subsp. lyrata] gi|297328778|gb|EFH59197.1| ATEXPA12 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15232568|ref|NP_188156.1| expansin-A12 [Arabidopsis thaliana] gi|20138021|sp|Q9LDJ3.1|EXP12_ARATH RecName: Full=Expansin-A12; Short=AtEXPA12; AltName: Full=Alpha-expansin-12; Short=At-EXP12; Short=AtEx12; AltName: Full=Ath-ExpAlpha-1.24; AltName: Full=Expansin-S2; Flags: Precursor gi|7021722|gb|AAF35403.1| putative expansin S2 precursor [Arabidopsis thaliana] gi|15795102|dbj|BAB02366.1| expansin-like protein [Arabidopsis thaliana] gi|38603940|gb|AAR24715.1| At3g15370 [Arabidopsis thaliana] gi|44681438|gb|AAS47659.1| At3g15370 [Arabidopsis thaliana] gi|332642139|gb|AEE75660.1| expansin-A12 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
TAIR|locus:2090161252 EXPA12 "expansin 12" [Arabidop 0.933 0.952 0.676 3e-92
TAIR|locus:2133427255 EXPA17 "expansin A17" [Arabido 0.918 0.925 0.5 9.2e-68
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.918 0.911 0.497 5.1e-67
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.910 0.917 0.493 1.3e-66
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.910 0.924 0.497 2.2e-66
TAIR|locus:2198576252 EXPA11 "expansin 11" [Arabidop 0.922 0.940 0.489 4.5e-66
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.902 0.843 0.522 5.8e-66
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.875 0.889 0.529 9.4e-66
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.914 0.914 0.489 1.4e-64
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.914 0.903 0.489 2e-63
TAIR|locus:2090161 EXPA12 "expansin 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 163/241 (67%), Positives = 191/241 (79%)

Query:    17 LILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLF 76
             +IL +  + +    N W+ AHATYYG + SP++LGGACGYDN  HAGFG +TAA+SG LF
Sbjct:    11 VILLVSTLSVGMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELF 70

Query:    77 RGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAF 136
             R G++CG CYQ+ CD+ ADPKWCLR A VT+TATNFCP NN+ GWC+ PR HFDMS PAF
Sbjct:    71 RSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNNNGWCNLPRHHFDMSSPAF 130

Query:   137 FRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSR 196
             FRIAR+GNEGIVP+ Y+RV CKRRGGV FT++GQ NFNMVM SNVGG G ++   VRGS+
Sbjct:   131 FRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSK 190

Query:   197 TKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRN-Q 255
              KTW+ M RNWGANW SS DLR QRLSFK+TL D +TQ F NVVPSSW FGQTFSSR  Q
Sbjct:   191 GKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQ 250

Query:   256 F 256
             F
Sbjct:   251 F 251
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA;ISS
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
TAIR|locus:2133427 EXPA17 "expansin A17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198576 EXPA11 "expansin 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XWU8EXPA1_ORYSJNo assigned EC number0.51520.86380.8505yesno
Q9LDJ3EXP12_ARATHNo assigned EC number0.67360.92990.9484yesno
A2Y5R6EXPA4_ORYSINo assigned EC number0.51330.83260.8699N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-95
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 5e-82
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 9e-37
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 9e-24
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 9e-24
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 2e-17
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information 
 Score =  281 bits (719), Expect = 1e-95
 Identities = 125/229 (54%), Positives = 165/229 (72%), Gaps = 7/229 (3%)

Query: 33  WLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDY 92
           W  AHAT+YG   +  T+GGACGY N    G+G  TAA+S  LF  G +CG CY++MCDY
Sbjct: 30  WTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDY 89

Query: 93  RADPKWCLRHATVTLTATNFCPPN-----NHGGWCDPPRQHFDMSMPAFFRIARQGNEGI 147
           +AD +WC++ A+VT+TATNFCPPN     N+GGWC+PP QHFDM+ PA+ +I      GI
Sbjct: 90  QADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIY-RGGI 148

Query: 148 VPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNW 207
           VP+L++RV CK+ GGV FT+ G+  F +V+ SNVGG+G ++   ++GS+T  W+AM RNW
Sbjct: 149 VPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKT-GWMAMSRNW 207

Query: 208 GANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQF 256
           GANW S+  L  Q LSFK+T  DG+T+ F NVVP++W FGQTFSS  QF
Sbjct: 208 GANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256

Length = 256
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.95
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.95
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.93
PLN00115118 pollen allergen group 3; Provisional 99.92
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.9
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.76
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 98.95
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.16
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.83
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.78
PRK10672361 rare lipoprotein A; Provisional 96.9
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 92.63
PF03404131 Mo-co_dimer: Mo-co oxidoreductase dimerisation dom 82.83
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-73  Score=502.01  Aligned_cols=226  Identities=55%  Similarity=1.145  Sum_probs=213.4

Q ss_pred             CCCCeEEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCCCCCCccccCCCEEEEE
Q 041395           29 QVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLT  108 (257)
Q Consensus        29 ~~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V~  108 (257)
                      +.++|.+|+|||||++|++++++|||||+++..++++.++||+|++||++|++||+||||+|....++++|.+|++|+|+
T Consensus        26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt  105 (256)
T PLN00193         26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT  105 (256)
T ss_pred             CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence            46689999999999999999999999999988889999999999999999999999999999643347789888899999


Q ss_pred             EecCCCCC-----CCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEEEEeeecCceEEEEcCccceeEEEEEeeCC
Q 041395          109 ATNFCPPN-----NHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGG  183 (257)
Q Consensus       109 VtD~Cp~~-----~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~V~C~~~g~i~~~v~ss~~w~~v~v~n~~g  183 (257)
                      |||+||++     +|++||++++.|||||.+||.+||.. ..|+++|+||||+|+++|+|+|++++++||++|+|.|++|
T Consensus       106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~-~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G  184 (256)
T PLN00193        106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIY-RGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGG  184 (256)
T ss_pred             EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhh-cCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCC
Confidence            99999975     68999998899999999999999998 8999999999999999999999999999999999999999


Q ss_pred             CcceeEEEEEecCCCCceEccccccceEEeCCCCCCcceEEEEEEeCCcEEEEceeeCCCCCCCeEEecccCC
Q 041395          184 SGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQF  256 (257)
Q Consensus       184 ~g~I~~Vev~~~~~~~W~~m~r~~gn~W~~~~~l~g~p~~~RvT~~~G~~vv~~~vip~~w~~G~~y~s~vqf  256 (257)
                      ++||++||||++++ +|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|++|++.+||
T Consensus       185 ~gdV~~v~Ik~~~~-~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        185 AGSIQSVSIKGSKT-GWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             CccEEEEEEecCCC-CeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence            99999999999875 8999999999999999888878999999999999999999999999999999999998

>PLN00050 expansin A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 3e-20
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 9e-20
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 26/240 (10%)
Query: 32  RWLNAHATYYGADQ---SPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQL 88
           +WL A AT+YG      +P   GGACG  N     +   TA  +  +F+ G+ CG+CY++
Sbjct: 18  KWLTARATWYGQPNGAGAPDN-GGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76
Query: 89  MCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQG----- 143
            C  +  P+      TV +T  N+ P   +         HFD+S  AF  +A+ G     
Sbjct: 77  RC--KEKPECSGNPVTVYITDMNYEPIAPY---------HFDLSGKAFGSLAKPGLNDKI 125
Query: 144 -NEGIVPILYKRVACKRRGG----VHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTK 198
            + GI+ + ++RV CK   G     H       N+  V+   V   GD+    ++   + 
Sbjct: 126 RHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSA 185
Query: 199 TWIAMQRNWGANWSSSVDLRIQ-RLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY 257
            W  M+ +WGA W       ++   S +LT   G+  +  +V+P++W     ++S  QFY
Sbjct: 186 EWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQFY 245
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 2e-62
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 4e-56
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 1e-46
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 3e-25
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 2e-24
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 8e-23
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 1e-20
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  195 bits (496), Expect = 2e-62
 Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 24/238 (10%)

Query: 33  WLNAHATYYGADQS--PSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMC 90
           WL A AT+YG          GGACG  N     +   TA  +  +F+ G+ CG+CY++ C
Sbjct: 19  WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 78

Query: 91  DYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQG------N 144
                P+      TV +T  N+ P             HFD+S  AF  +A+ G      +
Sbjct: 79  K--EKPECSGNPVTVYITDMNYEPIA---------PYHFDLSGKAFGSLAKPGLNDKIRH 127

Query: 145 EGIVPILYKRVACKRRGGVHFTLKGQSNFN----MVMFSNVGGSGDLKGAWVRGSRTKTW 200
            GI+ + ++RV CK   G       +   N     V+   V   GD+    ++   +  W
Sbjct: 128 CGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEW 187

Query: 201 IAMQRNWGANW-SSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY 257
             M+ +WGA W   +        S +LT   G+  +  +V+P++W     ++S  QFY
Sbjct: 188 KPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQFY 245
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 100.0
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.97
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.95
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.93
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.64
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.2
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.02
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 97.89
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 97.89
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.79
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.73
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.62
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 94.81
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=1.2e-66  Score=461.95  Aligned_cols=215  Identities=29%  Similarity=0.568  Sum_probs=199.6

Q ss_pred             CCCeEEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCCCCCCccccCCCEEEE
Q 041395           30 VNRWLNAHATYYGADQSPST--LGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTL  107 (257)
Q Consensus        30 ~~~~~~g~aT~Yg~~~~~~~--~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V  107 (257)
                      +++|+.|+||||++++++++  ++|||||++++..+++.++||+|++||++|++||+||||+|.+   +.+|.+ ++|+|
T Consensus        16 ~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~---~~~C~~-~sv~V   91 (245)
T 2hcz_X           16 NGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKE---KPECSG-NPVTV   91 (245)
T ss_dssp             CCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCS---SSSBCS-SCEEE
T ss_pred             CCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCC---CCccCC-CCEEE
Confidence            57899999999999998887  8999999998888899999999999999999999999999986   446985 58999


Q ss_pred             EEecCCCCCCCCCCCCCCCCceeeChHHHHhhhc-------CCCCCeEEEEEEEEEeeecC--ceEEEEc--CccceeEE
Q 041395          108 TATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIAR-------QGNEGIVPILYKRVACKRRG--GVHFTLK--GQSNFNMV  176 (257)
Q Consensus       108 ~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~~G~~~i~~r~V~C~~~g--~i~~~v~--ss~~w~~v  176 (257)
                      +|||+||       |+++..|||||++||.+||+       . ..|+++|+||||+|+++|  ||+|+++  +++||++|
T Consensus        92 ~VtD~C~-------C~~~~~hfDLS~~AF~~iA~~g~~~~L~-~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~av  163 (245)
T 2hcz_X           92 YITDMNY-------EPIAPYHFDLSGKAFGSLAKPGLNDKIR-HCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAV  163 (245)
T ss_dssp             EEEEECC-------CTTSSSEEEECHHHHHHTBCTTCHHHHT-TTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCCCE
T ss_pred             EEEeccC-------CCCCCccEEcCHHHHHHHhccccccccc-cCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceEEE
Confidence            9999998       65567999999999999999       6 799999999999999983  6999997  68999999


Q ss_pred             EEEeeCCCcceeEEEEEecCCCCceEccccccceEEeCCC--CCCcceEEEEEEeCCcEEEEceeeCCCCCCCeEEeccc
Q 041395          177 MFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVD--LRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRN  254 (257)
Q Consensus       177 ~v~n~~g~g~I~~Vev~~~~~~~W~~m~r~~gn~W~~~~~--l~g~p~~~RvT~~~G~~vv~~~vip~~w~~G~~y~s~v  254 (257)
                      +|.|++|+++|++|||+++++.+|++|+|+|||+|++++.  |++ ||+||||+++|++|+++||||++|++|++|++.+
T Consensus       164 lv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~~~~  242 (245)
T 2hcz_X          164 LVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNV  242 (245)
T ss_dssp             EEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETTSCEEEESCSCCSSCCTTCEEECSC
T ss_pred             EEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeCCcEEEEeeeecCCCCCCCEEeCcc
Confidence            9999999999999999999877999999999999999874  777 9999999999999999999999999999999999


Q ss_pred             CCC
Q 041395          255 QFY  257 (257)
Q Consensus       255 qf~  257 (257)
                      ||+
T Consensus       243 qf~  245 (245)
T 2hcz_X          243 QFY  245 (245)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            994
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 9e-39
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 4e-36
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 4e-26
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 3e-20
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  131 bits (330), Expect = 9e-39
 Identities = 31/172 (18%), Positives = 44/172 (25%), Gaps = 23/172 (13%)

Query: 30  VNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRG------GQACG 83
            N    A  T Y      +   G    D       G   AA S + F        GQ CG
Sbjct: 11  YNGKSCASTTNYHDSHKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCG 70

Query: 84  ACYQLMCDYRA---DPKWCLRHATVTLTATNFCPPNNH-GGWCDPPRQ-----------H 128
            C +L                  + T   TN CP       WC+   Q           H
Sbjct: 71  QCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELH 130

Query: 129 FDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSN 180
            D+      ++   G        ++ V C             S +     ++
Sbjct: 131 LDL-ENGRSQVTGMG-WNNPETTWEVVNCDSEHNHDHRTPSNSMYGQCQCAH 180
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.96
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.94
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.59
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 96.55
d2a9da1123 Sulfite oxidase, C-terminal domain {Chicken (Gallu 83.95
d1ogpa1127 Sulfite oxidase, C-terminal domain {Mouse-ear cres 81.54
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=4.3e-37  Score=250.30  Aligned_cols=123  Identities=31%  Similarity=0.639  Sum_probs=103.0

Q ss_pred             CCCCeEEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCCCCCCccccCCCEEE
Q 041395           29 QVNRWLNAHATYYGADQSPST--LGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVT  106 (257)
Q Consensus        29 ~~~~~~~g~aT~Yg~~~~~~~--~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~  106 (257)
                      ..++|++|+|||||++++.++  .+|||||++++..|++.++||+|+.+|++|..||+||||+|.+   +++|. +++|+
T Consensus        13 ~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~---~~~c~-~~sv~   88 (143)
T d1n10a2          13 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK---PEACS-GEPVV   88 (143)
T ss_dssp             CCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS---STTBC-SCCEE
T ss_pred             cCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC---CCccc-CCCEE
Confidence            368999999999999887654  4799999999888999999999999999999999999999987   67897 45999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCC------CCCeEEEEEEEEEeeecCc
Q 041395          107 LTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQG------NEGIVPILYKRVACKRRGG  162 (257)
Q Consensus       107 V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~------~~G~~~i~~r~V~C~~~g~  162 (257)
                      |+|||.||+      |. ...|||||+.||.+||+.+      +.|+++|+||||+|+++|+
T Consensus        89 V~vtd~c~~------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~gg  143 (143)
T d1n10a2          89 VHITDDNEE------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEG  143 (143)
T ss_dssp             EEEEEECSS------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTT
T ss_pred             EEEEecccC------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCCC
Confidence            999999996      33 3579999999999999852      4799999999999999863
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure