Citrus Sinensis ID: 041399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------
MKFMKLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQNAYSDLSLENEFQKIRSPRMTSDASKVKVAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFEQIRATASAAGNSTPDLPGSIRSLLPGGSHGSSRSTTTNTEEDWDSIPTADDIQALKGEIATLRLAGGNSDKNGNDGCKIDAEKVTAGKMKGILMSKIFSKLRSSKDKYGEISSSDTSESPSPGSTTAEETKSTPSRSRRHSVS
cccccccccccccccccccEEEEEccccccEEEEEccEEEEEccHHcccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEEcccccccHccccccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHcccccccccHHHHHHHHHHccccccccccccccccccccccccHHHcccccccccccccc
mkfmklgskpdsfqtegnNIRYVATELATDivfnvgdvkfylhkfpllsKSARLQKLVAatnddnsdempiqdipggpaAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTrsllpwseELKVVSHCLDSiatkasidtskvewsytynrrklpsengndphwngmrkpqsvpkdwwveDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQrlpgfgkgmiqngdvtKYRSLVETIMWllptekgsvpcGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLlirapsgdttvydVDTVQSLVEEFLAYEQNAysdlslenefqkirsprmtsdaskvkvakdpnlplakfvnLAEIVsifprqshdgLYRAIDMYlkehpgisksERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFEQIRATAsaagnstpdlpgsirsllpggshgssrstttnteedwdsiptadDIQALKGEIATLRlaggnsdkngndgckidaEKVTAGKMKGILMSKIFSKLRsskdkygeisssdtsespspgsttaeetkstpsrsrrhsvs
mkfmklgskpdsfqteGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAtnddnsdempiQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSiatkasidtskvewsYTYNrrklpsengndphwngmrkPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQNAYSDLSLENEFQKirsprmtsdaskvkvakdpnlplakfvnLAEIVSIFPRQSHDGLYRAIDMYLkehpgiskserKRICRLMDCRKLSVEACMHAvqnerlplRVVVQVLFFEQIRATasaagnstpdlPGSIRSllpggshgssrstttnteedwdsiptADDIQALKGEIATLRlaggnsdkngndgCKIDAEKVTAGKMKGILMSKIFSKLRSSKDKygeisssdtsespspgsttaeetkstpsrsrrhsvs
MKFMKLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQNAYSDLSLENEFQKIRSPRMTSDASKVKVAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFEQIRATASAAGNSTPDLPGSIRSLLPggshgssrstttntEEDWDSIPTADDIQALKGEIATLRLAGGNSDKNGNDGCKIDAEKVTAGKMKGILMSKIFSKLRSSKDKYGeisssdtsespspgsttaeetKSTPSRSRRHSVS
*****************NNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVA**************IPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSYTYN***********************PKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQNAYSDLS**************************NLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFEQIRAT*************************************************LKGEIATLR*************************MKGILMSKI**********************************************
*KF*KLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQK****************DIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASID*********************************VPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGK********TKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEF************************MTSDASKVKVAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFE*******************************************************************************************************************************************H***
***********SFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQNAYSDLSLENEFQKIRS***********VAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFEQIRATASAAGNSTPDLPGSIRSLLP****************DWDSIPTADDIQALKGEIATLRLAGGNSDKNGNDGCKIDAEKVTAGKMKGILMSKIFSKLR*****************************************
*******SKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSY************************SVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKG**QNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQ**********EFQKIRSPRMTSDASKVKVAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFEQIRATASAA*********************************************LKGEIATLRLAG*****************************************************************************
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MKFMKLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQNAYSDLSLENEFQKIRSPRMTSDASKVKVAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQVLFFEQIRATASAAGNSTPDLPGSIRSLLPGGSHGSSRSTTTNTEEDWDSIPTADDIQALKGEIATLRLAGGNSDKNGNDGCKIDAEKVTAGKMKGILMSKIFSKLRSSKDKYGEISSSDTSESPSPGSTTAEETKSTPSRSRRHSVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query617 2.2.26 [Sep-21-2011]
O80970634 BTB/POZ domain-containing yes no 0.907 0.883 0.584 0.0
Q0WL52580 BTB/POZ domain-containing no no 0.849 0.903 0.564 0.0
Q9FN09579 BTB/POZ domain-containing no no 0.880 0.937 0.559 0.0
O64814481 BTB/POZ domain-containing no no 0.732 0.939 0.586 1e-159
Q8H1D3571 BTB/POZ domain-containing no no 0.763 0.824 0.497 1e-136
Q9C9V6631 BTB/POZ domain-containing no no 0.918 0.898 0.429 1e-123
Q9FIK1559 BTB/POZ domain-containing no no 0.768 0.847 0.410 1e-106
Q9LIM6588 BTB/POZ domain-containing no no 0.769 0.807 0.407 1e-104
Q5KS50762 Coleoptile phototropism p no no 0.818 0.662 0.366 2e-99
Q9S9Q9665 BTB/POZ domain-containing no no 0.807 0.748 0.392 3e-99
>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1 Back     alignment and function desciption
 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/595 (58%), Positives = 452/595 (75%), Gaps = 35/595 (5%)

Query: 1   MKFMKLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAA 60
           MKFMK+GSK DSF+T+GNN+RYV  ELA+DI  +V   +F LHKFPLLSK A LQKL+++
Sbjct: 1   MKFMKIGSKLDSFKTDGNNVRYVENELASDISVDVEGSRFCLHKFPLLSKCACLQKLLSS 60

Query: 61  TNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGN 120
           T+ +N D++ I  IPGGP AFE CAKFCYGMTVTL+AYNVVA RCAAEYL M+ETVEKGN
Sbjct: 61  TDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMHETVEKGN 120

Query: 121 LIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEW 180
           LIYKI+VFL++S+FRSWKDSIIVLQTT+  LP SE+LK+VS C+D+IATKA +D S VEW
Sbjct: 121 LIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACVDVSHVEW 180

Query: 181 SYTYNRRKLPSE-NGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVS 239
           SYTYN++KL  E NG D       K + VP DWWVEDLCEL ID YKRVI  IKTK  + 
Sbjct: 181 SYTYNKKKLAEENNGADSI-----KARDVPHDWWVEDLCELEIDYYKRVIMNIKTKCILG 235

Query: 240 ADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLR 299
            +VIGEAL AY  +RL GF KG+++ GD+ K+++++ET++WLLP EK SV CGFLLKLL+
Sbjct: 236 GEVIGEALKAYGYRRLSGFNKGVMEQGDLVKHKTIIETLVWLLPAEKNSVSCGFLLKLLK 295

Query: 300 AAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQ 359
           A  M+  GE  + +L+R+IGQQLEEA+ A+LLI++  G  T+YDVD VQ +V EF+  ++
Sbjct: 296 AVTMVNSGEVVKEQLVRRIGQQLEEASMAELLIKSHQGSETLYDVDLVQKIVMEFMRRDK 355

Query: 360 NAYSDLSLEN-----EFQKIRS-PRMTSDASKV-----------KVAKDPNLPLAKFVNL 402
           N  S++ +++     E Q++R  P + S+ASK+           ++AKDPNLP +KF+++
Sbjct: 356 N--SEIEVQDDEDGFEVQEVRKLPGILSEASKLMVAKVIDSYLTEIAKDPNLPASKFIDV 413

Query: 403 AEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERL 462
           AE V+  PR +HD LYRAIDM+LKEHPGI+K E+KR+C+LMDCRKLSVEACMHAVQN+RL
Sbjct: 414 AESVTSIPRPAHDALYRAIDMFLKEHPGITKGEKKRMCKLMDCRKLSVEACMHAVQNDRL 473

Query: 463 PLRVVVQVLFFEQIRATASAAGNSTPDLP-GSIRSLLPGGSHGSSRSTTTNTEEDWDSIP 521
           PLRVVVQVLFFEQ+RA AS +G+STPDLP G  R L   G++GSSRS  T  E++W+++ 
Sbjct: 474 PLRVVVQVLFFEQVRAAAS-SGSSTPDLPRGMGRELRSCGTYGSSRSVPTVMEDEWEAVA 532

Query: 522 TADDIQALKGEIATLRLAGGNSDKNGNDGCKIDAEKVTA-GKMKGILMS-KIFSK 574
           T ++++ALK EIA L+L   +  K+      +D   VTA  K++ ++MS KIF K
Sbjct: 533 TEEEMRALKSEIAALKLQEESGRKS------MDRAGVTAISKIRSLIMSKKIFGK 581
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WL52|NPY5_ARATH BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|O64814|NPY4_ARATH BTB/POZ domain-containing protein NPY4 OS=Arabidopsis thaliana GN=NPY4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIM6|Y3649_ARATH BTB/POZ domain-containing protein At3g26490 OS=Arabidopsis thaliana GN=At3g26490 PE=1 SV=1 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query617
225438984629 PREDICTED: BTB/POZ domain-containing pro 0.990 0.971 0.774 0.0
224081859608 predicted protein [Populus trichocarpa] 0.959 0.973 0.751 0.0
356514340 1261 PREDICTED: uncharacterized protein LOC10 0.995 0.486 0.727 0.0
296087328586 unnamed protein product [Vitis vinifera] 0.930 0.979 0.745 0.0
449448232626 PREDICTED: BTB/POZ domain-containing pro 0.993 0.979 0.738 0.0
356563523629 PREDICTED: BTB/POZ domain-containing pro 0.993 0.974 0.729 0.0
357482641630 BTB/POZ domain-containing protein [Medic 0.987 0.966 0.725 0.0
356563525630 PREDICTED: BTB/POZ domain-containing pro 0.993 0.973 0.717 0.0
225428969626 PREDICTED: BTB/POZ domain-containing pro 0.991 0.977 0.706 0.0
302398633626 BZIP domain class transcription factor [ 0.969 0.955 0.724 0.0
>gi|225438984|ref|XP_002284345.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/635 (77%), Positives = 554/635 (87%), Gaps = 24/635 (3%)

Query: 1   MKFMKLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAA 60
           MKFMKLGSKPDSFQ +G+NIRYVATELATDIV NVGDVKFYLHKFPLLS+SARLQKLVA 
Sbjct: 1   MKFMKLGSKPDSFQADGDNIRYVATELATDIVVNVGDVKFYLHKFPLLSRSARLQKLVAN 60

Query: 61  TNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGN 120
           TN++N+DE+ IQDIPGGPAAFE+CAKFCY MTVTLNAYNVVAARCAAEYLEMYETVEKGN
Sbjct: 61  TNEENNDEIYIQDIPGGPAAFEVCAKFCYSMTVTLNAYNVVAARCAAEYLEMYETVEKGN 120

Query: 121 LIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEW 180
           LIYKIEVFLNTSIFRSWKDSIIVLQTT+SLLPWSEE+KVVSHCLDSIA+KASIDTSKVEW
Sbjct: 121 LIYKIEVFLNTSIFRSWKDSIIVLQTTKSLLPWSEEIKVVSHCLDSIASKASIDTSKVEW 180

Query: 181 SYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSA 240
           SYTYNR+KLPSENGNDPHWN ++K Q VP+DWWVEDLCEL IDLYKRVI+TIKTK  + A
Sbjct: 181 SYTYNRKKLPSENGNDPHWNEVKKHQMVPRDWWVEDLCELQIDLYKRVITTIKTKGGIPA 240

Query: 241 DVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRA 300
           DVIGE+L AYA++RL GF KGM+Q GDV K+RSLVETI+WLLPTEKGSVPC FLLKLL+A
Sbjct: 241 DVIGESLKAYAMRRLQGFSKGMVQCGDVLKHRSLVETIVWLLPTEKGSVPCSFLLKLLKA 300

Query: 301 AIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQN 360
           AI+LECGE  R ELMR+ GQQLEEA   DLLI A  G+ T+YDVD VQ+LVEEF+ ++++
Sbjct: 301 AILLECGEMGRRELMRRTGQQLEEAIVTDLLIHASPGEATIYDVDIVQNLVEEFVIHDRS 360

Query: 361 AYSDLSLENEFQKIRSPRMTSDASKVKVAK-----------DPNLPLAKFVNLAEIVSIF 409
           A      ENEFQ+IRSP    +ASK+ VAK           DPNLPL+KFV+LAE+VS F
Sbjct: 361 APG----ENEFQEIRSPGFVPEASKLMVAKLVDGYLAEIARDPNLPLSKFVDLAEMVSGF 416

Query: 410 PRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPLRVVVQ 469
            R SHDGLYRAIDMYLKEHPGISKSERKRICRLMDC+KLS +ACMHAVQNERLPLRVVVQ
Sbjct: 417 SRPSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCKKLSTDACMHAVQNERLPLRVVVQ 476

Query: 470 VLFFEQIRATASAAGNSTPDLPGSIRSLLPGGSHGSSRSTTTNTEEDWDSIPTADDIQAL 529
           VLFFEQ+RA  S+AG+STPDLPGS+R+LLPGGSHGSSRS TTNTEE+WD++PTA++++AL
Sbjct: 477 VLFFEQVRAATSSAGSSTPDLPGSVRALLPGGSHGSSRSATTNTEEEWDAVPTAEELKAL 536

Query: 530 KGEIATLRLA---GGNSDKNG---NDGCKIDAEKVTAGKMKGILMS-KIFSKLRSSKDKY 582
           KGE+ATLRL    GG SD++G   NDG K +AE V A K+KG+LMS KIFS+L SSK+K 
Sbjct: 537 KGELATLRLGAGVGGGSDRSGNELNDGPKSNAENVAASKVKGLLMSKKIFSRLWSSKEKL 596

Query: 583 GEISSSDTSESPSPGSTTAEETKSTPSRSRRHSVS 617
           GE SSSDTSE  SPGS  AEETKSTPSRSRRHSVS
Sbjct: 597 GENSSSDTSE--SPGSANAEETKSTPSRSRRHSVS 629

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224081859|ref|XP_002306504.1| predicted protein [Populus trichocarpa] gi|222855953|gb|EEE93500.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514340|ref|XP_003525864.1| PREDICTED: uncharacterized protein LOC100775860 [Glycine max] Back     alignment and taxonomy information
>gi|296087328|emb|CBI33702.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448232|ref|XP_004141870.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Cucumis sativus] gi|449519579|ref|XP_004166812.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563523|ref|XP_003550011.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] Back     alignment and taxonomy information
>gi|357482641|ref|XP_003611607.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355512942|gb|AES94565.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356563525|ref|XP_003550012.1| PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] Back     alignment and taxonomy information
>gi|225428969|ref|XP_002264153.1| PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302398633|gb|ADL36611.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query617
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.925 0.900 0.568 5.4e-173
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.766 0.816 0.618 8.1e-166
TAIR|locus:2045314481 NPY4 "NAKED PINS IN YUC MUTANT 0.515 0.661 0.591 3e-144
TAIR|locus:2116752571 ENP "ENHANCER OF PINOID" [Arab 0.756 0.817 0.502 1.3e-124
TAIR|locus:2120125580 NPY5 "NAKED PINS IN YUC MUTANT 0.521 0.555 0.654 2.1e-124
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.567 0.554 0.446 3.7e-116
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.406 0.336 0.412 5e-106
TAIR|locus:2079296588 AT3G26490 [Arabidopsis thalian 0.593 0.622 0.407 2.9e-97
TAIR|locus:2160877559 AT5G47800 [Arabidopsis thalian 0.768 0.847 0.410 8.4e-97
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.734 0.75 0.389 1.5e-81
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1681 (596.8 bits), Expect = 5.4e-173, P = 5.4e-173
 Identities = 342/602 (56%), Positives = 445/602 (73%)

Query:     1 MKFMKLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAA 60
             MKFMK+GSK DSF+T+GNN+RYV  ELA+DI  +V   +F LHKFPLLSK A LQKL+++
Sbjct:     1 MKFMKIGSKLDSFKTDGNNVRYVENELASDISVDVEGSRFCLHKFPLLSKCACLQKLLSS 60

Query:    61 TNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGN 120
             T+ +N D++ I  IPGGP AFE CAKFCYGMTVTL+AYNVVA RCAAEYL M+ETVEKGN
Sbjct:    61 TDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMHETVEKGN 120

Query:   121 LIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEW 180
             LIYKI+VFL++S+FRSWKDSIIVLQTT+  LP SE+LK+VS C+D+IATKA +D S VEW
Sbjct:   121 LIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACVDVSHVEW 180

Query:   181 SYTYNRRKLPSEN-GNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVS 239
             SYTYN++KL  EN G D       K + VP DWWVEDLCEL ID YKRVI  IKTK  + 
Sbjct:   181 SYTYNKKKLAEENNGADSI-----KARDVPHDWWVEDLCELEIDYYKRVIMNIKTKCILG 235

Query:   240 ADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLR 299
              +VIGEAL AY  +RL GF KG+++ GD+ K+++++ET++WLLP EK SV CGFLLKLL+
Sbjct:   236 GEVIGEALKAYGYRRLSGFNKGVMEQGDLVKHKTIIETLVWLLPAEKNSVSCGFLLKLLK 295

Query:   300 AAIMLECGETERTELMRKIGQQLEEATAADLLIRAPSGDTTVYDVDTVQSLVEEFLAYEQ 359
             A  M+  GE  + +L+R+IGQQLEEA+ A+LLI++  G  T+YDVD VQ +V EF+  ++
Sbjct:   296 AVTMVNSGEVVKEQLVRRIGQQLEEASMAELLIKSHQGSETLYDVDLVQKIVMEFMRRDK 355

Query:   360 NAYSDLSLEN---EFQKIRS-PRMTSDASKV-----------KVAKDPNLPLAKFVNLAE 404
             N+  ++  +    E Q++R  P + S+ASK+           ++AKDPNLP +KF+++AE
Sbjct:   356 NSEIEVQDDEDGFEVQEVRKLPGILSEASKLMVAKVIDSYLTEIAKDPNLPASKFIDVAE 415

Query:   405 IVSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSVEACMHAVQNERLPL 464
              V+  PR +HD LYRAIDM+LKEHPGI+K E+KR+C+LMDCRKLSVEACMHAVQN+RLPL
Sbjct:   416 SVTSIPRPAHDALYRAIDMFLKEHPGITKGEKKRMCKLMDCRKLSVEACMHAVQNDRLPL 475

Query:   465 RVVVQVLFFEQIRATASAAGNSTPDLP-GSIRSLLPXXXXXXXXXXXXXXEEDWDSIPTA 523
             RVVVQVLFFEQ+RA AS+ G+STPDLP G  R L                E++W+++ T 
Sbjct:   476 RVVVQVLFFEQVRAAASS-GSSTPDLPRGMGRELRSCGTYGSSRSVPTVMEDEWEAVATE 534

Query:   524 DDIQALKGEIATLRLAGGNSDKNGNDGCKIDAEKVTA-GKMKGILMSK-IFSKLRSSKDK 581
             ++++ALK EIA L+L     +++G     +D   VTA  K++ ++MSK IF K    + K
Sbjct:   535 EEMRALKSEIAALKL----QEESGRKS--MDRAGVTAISKIRSLIMSKKIFGKKVQLQSK 588

Query:   582 YG 583
              G
Sbjct:   589 GG 590
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0009958 "positive gravitropism" evidence=IGI
GO:0071944 "cell periphery" evidence=IDA
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045314 NPY4 "NAKED PINS IN YUC MUTANTS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116752 ENP "ENHANCER OF PINOID" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120125 NPY5 "NAKED PINS IN YUC MUTANTS 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079296 AT3G26490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160877 AT5G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80970NPY2_ARATHNo assigned EC number0.58480.90760.8832yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query617
pfam03000249 pfam03000, NPH3, NPH3 family 1e-114
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-06
pfam00651101 pfam00651, BTB, BTB/POZ domain 1e-04
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  341 bits (878), Expect = e-114
 Identities = 132/257 (51%), Positives = 170/257 (66%), Gaps = 21/257 (8%)

Query: 210 KDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDV- 268
           +DWW EDL EL IDL+KRVI+ +K++  V  +VIGEAL  YA + LPG  +      D  
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSR-GVKPEVIGEALMHYAKKWLPGLSRSGSSEEDSE 59

Query: 269 TKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAA 328
            + R+L+ETI+ LLP+EKGSV C FL KLLRAAI+L   E+ R EL R+IG QL++AT  
Sbjct: 60  EEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATLD 119

Query: 329 DLLIRA-PSGDTTVYDVDTVQSLVEEFLAYEQNAYSDLSLENEFQKIRSPRMTSDASKVK 387
           DLLI +  SG+ T+YDVD VQ ++E FL+ +    S    ++E          S +S +K
Sbjct: 120 DLLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDDEDSEAS-------PSSSSLLK 172

Query: 388 VAK-----------DPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKSER 436
           VAK           DPNL L+KF+ LAE V    R SHDGLYRAID+YLK HP +S+SE+
Sbjct: 173 VAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEK 232

Query: 437 KRICRLMDCRKLSVEAC 453
           KR+CRLMDC+KLS EAC
Sbjct: 233 KRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 617
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.95
PHA02713557 hypothetical protein; Provisional 99.93
PHA02790480 Kelch-like protein; Provisional 99.9
PHA03098534 kelch-like protein; Provisional 99.9
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.64
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.54
KOG4350620 consensus Uncharacterized conserved protein, conta 99.18
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.14
KOG4591280 consensus Uncharacterized conserved protein, conta 98.78
KOG4682488 consensus Uncharacterized conserved protein, conta 98.46
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.17
KOG07831267 consensus Uncharacterized conserved protein, conta 98.15
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.46
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.69
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.18
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.06
KOG2838401 consensus Uncharacterized conserved protein, conta 94.67
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 93.82
KOG3473112 consensus RNA polymerase II transcription elongati 93.35
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 93.1
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 92.32
KOG2838401 consensus Uncharacterized conserved protein, conta 82.41
KOG3840438 consensus Uncharaterized conserved protein, contai 80.9
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=8.7e-83  Score=648.66  Aligned_cols=243  Identities=53%  Similarity=0.839  Sum_probs=216.8

Q ss_pred             CCcccccccccCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhhCCCCCCCc--------ccCCchHHHHHHHHHHHHh
Q 041399          210 KDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGM--------IQNGDVTKYRSLVETIMWL  281 (617)
Q Consensus       210 ~dWW~EDL~~L~idl~~rvI~am~s~g~~~~e~I~~aL~~Ya~r~L~~~~~~~--------~~~~~~~~~r~LLEtIv~L  281 (617)
                      +|||||||+.|++|+|+|||.+|+++|+. +++||++|++||++|||+..+..        .......++|.+||+||+|
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~-~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l   79 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMK-PEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL   79 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence            48999999999999999999999999984 68999999999999999984321        1112357899999999999


Q ss_pred             cCCCCCCcchHHHHHHHHHHhhhccCHHHHHHHHHHHHhcccccCccceeccC-CCCCcccchHHHHHHHHHHHHhchhc
Q 041399          282 LPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRA-PSGDTTVYDVDTVQSLVEEFLAYEQN  360 (617)
Q Consensus       282 LP~ek~svsc~FL~~LLR~A~~l~as~~cr~~LEkrIg~qLd~AtldDLLiPs-~~~~~t~yDVd~V~ril~~Fl~~~~~  360 (617)
                      ||.||+++||+|||+|||+|+.++++..||.+||+|||.|||||||+|||||+ ++..+|+||||+|+|||++||.+++.
T Consensus        80 LP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~  159 (258)
T PF03000_consen   80 LPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE  159 (258)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999 34447999999999999999998532


Q ss_pred             cc------cCcchhhhHhhhcCCCCCccchhhhhcCCCCCChHHHHHHHHhhcCCccccchhHHHHHHHHHhhCCCCCHH
Q 041399          361 AY------SDLSLENEFQKIRSPRMTSDASKVKVAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKS  434 (617)
Q Consensus       361 ~~------~~~~~~~~~~~~~~~~~l~d~~l~eVA~D~nL~~skF~~LAe~lP~~aR~~hDgLYrAIDiYLK~Hp~ls~~  434 (617)
                      ..      ...........+.+|++|+|+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~  239 (258)
T PF03000_consen  160 AGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEE  239 (258)
T ss_pred             cccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHH
Confidence            11      001111223456678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcccccCCCCHHHh
Q 041399          435 ERKRICRLMDCRKLSVEAC  453 (617)
Q Consensus       435 Er~~lCr~mdc~KLS~EAc  453 (617)
                      ||++||++|||||||+|||
T Consensus       240 Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  240 ERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HHHHHHhhCCcccCCcccC
Confidence            9999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query617
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 1e-05
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-05
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 2e-05
2vpk_A116 Myoneurin; transcription regulation, transcription 4e-05
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-05
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 7e-05
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 1e-04
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-04
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 63/335 (18%), Positives = 107/335 (31%), Gaps = 79/335 (23%)

Query: 29  TDIVFNVGDVKFYL-HKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKF 87
           TD +         L H    L+       L+   +    D +P + +   P    I A+ 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAES 336

Query: 88  CYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNT-------------SIF 134
                 T             +    ++ V    L   IE  LN              S+F
Sbjct: 337 IRDGLATW------------DN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 135 RSWKDSIIVLQTTRSLLPWSEELK-VVSHCLDSIATKASIDTSKVEWSYT----YNRRKL 189
                + I       +  W + +K  V   ++ +   + ++    E + +    Y   K+
Sbjct: 382 P--PSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 190 PSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLY---------------------KRV 228
             EN    H   +    ++PK +  +DL   ++D Y                     + V
Sbjct: 438 KLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 229 ---ISTIKTKERVSADVIGEALNAYA-----LQRLPGFGKGMIQNGDVTKYRSLVETIMW 280
                 ++ K R        A NA       LQ+L  + K  I + D  KY  LV  I+ 
Sbjct: 497 FLDFRFLEQKIRHD----STAWNASGSILNTLQQLKFY-KPYICDND-PKYERLVNAILD 550

Query: 281 LLPTEKGSVPCGFLLKLLRAAIMLECG----ETER 311
            LP  + ++ C     LLR A+M E      E  +
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query617
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.95
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.94
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.83
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.82
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.82
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.81
2vpk_A116 Myoneurin; transcription regulation, transcription 99.81
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.81
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.81
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.8
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.8
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.8
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.8
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.8
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.79
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.79
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.79
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.78
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.76
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.71
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.32
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.13
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.99
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.85
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.27
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.22
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.13
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.56
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.26
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 96.68
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.36
3kvt_A115 Potassium channel protein SHAW; tetramerization do 92.91
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 91.39
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 90.2
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 88.83
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 86.55
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.95  E-value=1.5e-28  Score=246.87  Aligned_cols=224  Identities=12%  Similarity=0.091  Sum_probs=166.3

Q ss_pred             eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-C--CCCCCccccCCCCCChHHHHHHHHhhccceEEeec
Q 041399           21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-N--DDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA   97 (617)
Q Consensus        21 ~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~--e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~   97 (617)
                      .++.++.+|||+|.|||+.|++||.+|+++|+||++||+.. .  +....+|.|++++  +++|+.+++|+|||++.++.
T Consensus        24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~  101 (256)
T 3hve_A           24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE  101 (256)
T ss_dssp             TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccH
Confidence            47889999999999999999999999999999999999874 3  4566789999995  79999999999999999999


Q ss_pred             ccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhch---hhhhHHHHHHHhccC
Q 041399           98 YNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKV---VSHCLDSIATKASID  174 (617)
Q Consensus        98 ~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~I---v~rCidsLA~kA~~d  174 (617)
                      +||..++.||++|||++      |+..|+.||.+.+         ...||..++.+|+.+++   ...|.+-|+...   
T Consensus       102 ~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f---  163 (256)
T 3hve_A          102 DTIQDVVQAADLLLLTD------LKTLCCEFLEGCI---------AAENCIGIRDFALHYCLHHVHYLATEYLETHF---  163 (256)
T ss_dssp             CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTC---------CSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHChHH------HHHHHHHHHHhhC---------CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH---
Confidence            99999999999999995      7899999999988         45799999999999973   333333232221   


Q ss_pred             CCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHH
Q 041399          175 TSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKER--VSADVIGEALNAYAL  252 (617)
Q Consensus       175 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~--~~~e~I~~aL~~Ya~  252 (617)
                                                        ...+-.+++..|+.+.+..+|.   +..+  ..++.|.++++.|++
T Consensus       164 ----------------------------------~~v~~~~~f~~L~~~~l~~lL~---~d~L~v~~E~~v~~av~~W~~  206 (256)
T 3hve_A          164 ----------------------------------RDVSSTEEFLELSPQKLKEVIS---LEKLNVGNERYVFEAVIRWIA  206 (256)
T ss_dssp             ----------------------------------HHHTTCHHHHSSCHHHHHHHHH---CC-------CTTHHHHTTTCC
T ss_pred             ----------------------------------HHHhCCcchhcCCHHHHHHHHc---cCCCCCCCHHHHHHHHHHHHH
Confidence                                              0011246899999999999999   5544  346788999998887


Q ss_pred             hhCCCCCCCcccCCchHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhhhccC-HHHHHHHHH
Q 041399          253 QRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECG-ETERTELMR  316 (617)
Q Consensus       253 r~L~~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~FL~~LLR~A~~l~as-~~cr~~LEk  316 (617)
                      +....+.         .....|++.|+  +    +.+|..||...++...++..+ +.||..|++
T Consensus       207 ~~~~~R~---------~~~~~ll~~VR--f----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          207 HDTEIRK---------VHMKDVMSALW--V----SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             C--CCST---------TTHHHHHHHHH--H----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             cCHHHHH---------HHHHHHHHhCC--C----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence            7655443         45678999999  5    457888999999999999988 689998875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 617
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 5e-09
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-08
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 29  TDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFC 88
            D+V  V   +F+ H+  L   S    K+       NS    +  +   P  F+   ++ 
Sbjct: 29  CDVVIMVDSQEFHAHRTVLACTS----KMFEILFHRNSQHYTLDFLS--PKTFQQILEYA 82

Query: 89  YGMTVTLNAYNVVAARCAAEYLEMYETVEK 118
           Y  T+   A ++     AAE LE+    E+
Sbjct: 83  YTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query617
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.83
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.82
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.33
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 96.96
d3kvta_103 akv3.1 voltage-gated potassium channel {California 95.89
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.5
d1t1da_100 Shaker potassium channel {California sea hare (Apl 93.55
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 89.41
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 87.05
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-21  Score=173.28  Aligned_cols=102  Identities=24%  Similarity=0.330  Sum_probs=91.6

Q ss_pred             eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccH
Q 041399           22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNV  100 (617)
Q Consensus        22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV  100 (617)
                      ++.+|.+|||+|.|+|++|++||.+|+++|+||++||.+. .+.....+.+.+++  +++|+.+++|+|||++.++.+||
T Consensus        19 l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i~~~~v   96 (122)
T d1r29a_          19 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGNI   96 (122)
T ss_dssp             HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCeecCchhhH
Confidence            6788999999999999999999999999999999999876 44444445567885  79999999999999999999999


Q ss_pred             HHHHHhHhhcCcchhhccccHHHHHHHHhhh
Q 041399          101 VAARCAAEYLEMYETVEKGNLIYKIEVFLNT  131 (617)
Q Consensus       101 ~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~  131 (617)
                      ..++.||++|||+      .|++.|+.||+.
T Consensus        97 ~~ll~~A~~l~i~------~L~~~C~~~L~~  121 (122)
T d1r29a_          97 MAVMATAMYLQME------HVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHTTCH------HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcH------HHHHHHHHHHHh
Confidence            9999999999999      488999999985
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure