Citrus Sinensis ID: 041406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MLFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEccccEEEEEccccccEEEccccccccccccccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccEEcccccccccccccccccEEEccccccEEcccHHccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccccccccccccEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEccccEEEEEEccccccccccHHHcccHHHHHHHcccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccccccccHHcccccccEEEcccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEcccc
Coil and Loop (DISEMBL)
MLFVLESHQAfveaddeqnpdeqSLISFKNALESSHNLvswnktnphcywvgvscqrGRVIWLVLpthslkgplspslfflsslsdlsqnplfgqLSRQVSNLKRlkqlslgenqlsdfvpsqlgvltqletlslgsnsftgeipselgklknlktldlsgnefngtvrdkllppeigelslleifsspscsitgplpeelSKLKFLSMldlsenplkcsvpKAIGELRKLGIlnlgstqlngsipaelgKCENLMSVMLSCNalsgslpeqlselpVLIFAAEKN
Flexible Loop (DISEMBL)
MLFVLESHQAfveaddeqnpDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGslpeqlselpvliFAAEKN
Low Complexity Region (SEG)
MLFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHslkgplspslfflsslsdlsQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN
Disordered region (IsUnstruct)
**********************************SHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDL****LFG********************QLSDFVPSQLGVLTQLETLSLGSNSFTG*I***LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF*****
Disordered Region (DISOPRED)
MLFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN
Disordered Region (DISEMBL)
MLFVLESHQAFVE********EQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN
Disordered Region (DISPRO)
MLFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9LYN8	1192	Leucine-rich repeat recep	yes	no	0.912	0.218	0.450	8e-50
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.923	0.211	0.344	3e-32
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.919	0.210	0.330	4e-31
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.940	0.261	0.311	2e-30
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.884	0.250	0.355	4e-28
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.902	0.234	0.343	6e-28
Q9LP24	1120	Probable leucine-rich rep	no	no	0.891	0.227	0.326	2e-27
C0LGT6	1031	LRR receptor-like serine/	no	no	0.912	0.253	0.318	2e-27
Q9FL28	1173	LRR receptor-like serine/	no	no	0.881	0.214	0.321	9e-27
Q42371	976	LRR receptor-like serine/	no	no	0.727	0.213	0.331	4e-26

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/295 (45%), Positives = 175/295 (59%), Gaps = 34/295 (11%)

Query: 21  DEQSLISFKNALESSHNLVSWNKTNP--HCYWVGVSCQRGRV------------------ 60
           +  SLISFK +LE+   L SWN ++   HC WVGV+C  GRV                  
Sbjct: 26  ETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTCLLGRVNSLSLPSLSLRGQIPKEI 85

Query: 61  ------IWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLG 112
                   L L  +   G + P ++ L  L   DLS N L G L R +S L +L  L L 
Sbjct: 86  SSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLS 145

Query: 113 ENQLSDFVPSQLGV-LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK 171
           +N  S  +P    + L  L +L + +NS +GEIP E+GKL NL  L +  N F+G +   
Sbjct: 146 DNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQI--- 202

Query: 172 LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231
             P EIG +SLL+ F++PSC   GPLP+E+SKLK L+ LDLS NPLKCS+PK+ GEL  L
Sbjct: 203 --PSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNL 260

Query: 232 GILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
            ILNL S +L G IP ELG C++L S+MLS N+LSG LP +LSE+P+L F+AE+N
Sbjct: 261 SILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERN 315

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 149/296 (50%), Gaps = 32/296 (10%)

Query: 19  NPDEQSLISFKNAL----ESSHNLVSWNKTN-PHCYWVGVSCQRG---RVIWLVLPTHSL 70
           N D Q+L+  K +L    +    L  WN  N  +C W GV+C      RVI L L    L
Sbjct: 24  NNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGL 83

Query: 71  KGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128
            G +SP      +L   DLS N L G +   +SNL  L+ L L  NQL+  +PSQLG L 
Sbjct: 84  TGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLV 143

Query: 129 QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL---------------- 172
            + +L +G N   G+IP  LG L NL+ L L+     G +  +L                
Sbjct: 144 NIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYL 203

Query: 173 ---LPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELR 229
              +P E+G  S L +F++    + G +P EL +L+ L +L+L+ N L   +P  +GE+ 
Sbjct: 204 EGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMS 263

Query: 230 KLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQ---LSELPVLIFA 282
           +L  L+L + QL G IP  L    NL ++ LS N L+G +PE+   +S+L  L+ A
Sbjct: 264 QLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLA 319

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 148/303 (48%), Gaps = 40/303 (13%)

Query: 18  QNPDEQSLISFKNAL----ESSHNLVSWNKTNP-HCYWVGVSCQRGRVIWLVLPTHSLKG 72
           Q  D Q+L+  KN+     +    L  WN  +P +C W GV+C    +I L L    L G
Sbjct: 26  QRDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCGGREIIGLNLSGLGLTG 85

Query: 73  PLSPSLFFLSSLS--DLSQNPLFG-------------------------QLSRQVSNLKR 105
            +SPS+   ++L   DLS N L G                          +  Q+ +L  
Sbjct: 86  SISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVN 145

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
           LK L LG+N+L+  +P   G L  L+ L+L S   TG IPS  G+L  L+TL L  NE  
Sbjct: 146 LKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELE 205

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
           G +     P EIG  + L +F++    + G LP EL++LK L  L+L +N     +P  +
Sbjct: 206 GPI-----PAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQL 260

Query: 226 GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQ---LSELPVLIFA 282
           G+L  +  LNL   QL G IP  L +  NL ++ LS N L+G + E+   +++L  L+ A
Sbjct: 261 GDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLA 320

Query: 283 AEK 285
             +
Sbjct: 321 KNR 323

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 150/324 (46%), Gaps = 55/324 (16%)

Query: 11  FVEADDEQNPDEQSLISFKNAL-ESSHNLVSWNKTN--------PHCYWVGVSCQ-RGRV 60
           FV ++  QN +++ L++FK+ L + S+NL  W +           HC+W GV C   G V
Sbjct: 20  FVSSETFQNSEQEILLAFKSDLFDPSNNLQDWKRPENATTFSELVHCHWTGVHCDANGYV 79

Query: 61  IWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLK----------- 107
             L+L   +L G +S  +    SL   DLS N     L + +SNL  LK           
Sbjct: 80  AKLLLSNMNLSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFG 139

Query: 108 -------------QLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNL 154
                         ++   N  S F+P  LG  T LE L      F G +PS    LKNL
Sbjct: 140 TFPYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNL 199

Query: 155 KTLDLSGNEFNGTVRDKL-------------------LPPEIGELSLLEIFSSPSCSITG 195
           K L LSGN F G V   +                   +P E G+L+ L+       ++TG
Sbjct: 200 KFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTG 259

Query: 196 PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENL 255
            +P  L +LK L+ + L +N L   +P+ +G +  L  L+L   Q+ G IP E+G+ +NL
Sbjct: 260 QIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNL 319

Query: 256 MSVMLSCNALSGSLPEQLSELPVL 279
             + L  N L+G +P +++ELP L
Sbjct: 320 QLLNLMRNQLTGIIPSKIAELPNL 343

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 136/267 (50%), Gaps = 14/267 (5%)

Query: 21  DEQSLISFKNALESSHNLV--SWNKTNPHCYWVGVSCQRG--RVIWLVLPTHSLKGPLSP 76
           D Q+L+ FK+ +     +V  SWN + P C W GV+C R   RV  L L    L G +SP
Sbjct: 25  DRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISP 84

Query: 77  S---LFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
           S   L FL SL DL +N   G + ++V  L RL+ L +G N L   +P  L   ++L  L
Sbjct: 85  SIGNLSFLVSL-DLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNL 143

Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSI 193
            L SN   G +PSELG L NL  L+L GN   G      LP  +G L+LLE  +    ++
Sbjct: 144 RLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGK-----LPTSLGNLTLLEQLALSHNNL 198

Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK-C 252
            G +P ++++L  +  L L  N      P A+  L  L +L +G    +G +  +LG   
Sbjct: 199 EGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILL 258

Query: 253 ENLMSVMLSCNALSGSLPEQLSELPVL 279
            NL+S  +  N  +GS+P  LS +  L
Sbjct: 259 PNLLSFNMGGNYFTGSIPTTLSNISTL 285

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 139/271 (51%), Gaps = 13/271 (4%)

Query: 19  NPDEQSLISFKNA-LESSHNLVSWNKTNPH-CYWVGVSCQRG----RVIWLVLPTHSLKG 72
           N + Q L+  K+  +++  NL +WN  +   C W GV C        V+ L L +  L G
Sbjct: 28  NLEGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSG 87

Query: 73  PLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQL 130
            LSPS+  L  L   DLS N L G++ +++ N   L+ L L  NQ    +P ++G L  L
Sbjct: 88  KLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSL 147

Query: 131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS 190
           E L + +N  +G +P E+G L +L  L    N  +G      LP  IG L  L  F +  
Sbjct: 148 ENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQ-----LPRSIGNLKRLTSFRAGQ 202

Query: 191 CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELG 250
             I+G LP E+   + L ML L++N L   +PK IG L+KL  + L   + +G IP E+ 
Sbjct: 203 NMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREIS 262

Query: 251 KCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
            C +L ++ L  N L G +P++L +L  L F
Sbjct: 263 NCTSLETLALYKNQLVGPIPKELGDLQSLEF 293

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 138/294 (46%), Gaps = 39/294 (13%)

Query: 21  DEQSLISFKNALESSHNLVSW-----NKTNPHCY-WVGVSCQ-RGRV------------- 60
           +  +L+ +K+   +S  L SW       T+  C  W GVSC  RG +             
Sbjct: 33  EANALLKWKSTFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGT 92

Query: 61  ------------IWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRL 106
                        ++ L  + L G + P    LS L   DLS N L G++S  + NLK L
Sbjct: 93  FQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNL 152

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
             L L +N L+  +PS+LG +  +  L+L  N  TG IPS LG LKNL  L L  N   G
Sbjct: 153 TVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTG 212

Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
            +     PPE+G +  +   +     +TG +P  L  LK L +L L EN L   +P  IG
Sbjct: 213 VI-----PPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIG 267

Query: 227 ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLI 280
            +  +  L L   +L GSIP+ LG  +NL  + L  N L+G +P +L  +  +I
Sbjct: 268 NMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMI 321

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 140/298 (46%), Gaps = 37/298 (12%)

Query: 11  FVEADDEQNPDEQSLISFKNALESSHN---LVSWNKTNPHCYWVGVSC--QRGRVIWLVL 65
           F +A      D Q+L+ FK+ +  ++    L SWN ++P C W+GV+C  +R RVI L L
Sbjct: 21  FAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNL 80

Query: 66  PTHSLKGPLSPSLFFLSSLS--------------------------DLSQNPLFGQLSRQ 99
               L G +SPS+  LS L                           ++S N L G++   
Sbjct: 81  GGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSS 140

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           +SN  RL  + L  N L   VPS+LG L++L  L L  N+ TG  P+ LG L +L+ LD 
Sbjct: 141 LSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDF 200

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
           + N+  G +     P E+  L+ +  F     S +G  P  L  +  L  L L++N    
Sbjct: 201 AYNQMRGEI-----PDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSG 255

Query: 220 SVPKAIG-ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSEL 276
           ++    G  L  L  L LG+ Q  G+IP  L    +L    +S N LSGS+P    +L
Sbjct: 256 NLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKL 313

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  120 bits (302), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 20  PDEQSLISFKNALESS--HNLVSWNKTNP--HCYWVGVSCQ-RGRVIWLVLPTHSLKGPL 74
           P+ ++L SFKN + +     L  W       HC W G++C   G V+ + L    L+G L
Sbjct: 29  PEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVL 88

Query: 75  SPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLET 132
           SP++  L+ L   DL+ N   G++  ++  L  L QL L  N  S  +PS +  L  +  
Sbjct: 89  SPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFY 148

Query: 133 LSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192
           L L +N  +G++P E+ K  +L  +    N   G +     P  +G+L  L++F +    
Sbjct: 149 LDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKI-----PECLGDLVHLQMFVAAGNH 203

Query: 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKC 252
           +TG +P  +  L  L+ LDLS N L   +P+  G L  L  L L    L G IPAE+G C
Sbjct: 204 LTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNC 263

Query: 253 ENLMSVMLSCNALSGSLPEQLSEL 276
            +L+ + L  N L+G +P +L  L
Sbjct: 264 SSLVQLELYDNQLTGKIPAELGNL 287

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 6/214 (2%)

Query: 73  PLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLET 132
           P+  +L F   L  L  N L G +  ++ N+ +L  L L +N L+  +P +LG LT L  
Sbjct: 301 PILGNLTFTEKLY-LHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFD 359

Query: 133 LSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192
           L++ +N   G IP  L    NL +L++ GN+F+GT+     P    +L  +   +  S +
Sbjct: 360 LNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTI-----PRAFQKLESMTYLNLSSNN 414

Query: 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKC 252
           I GP+P ELS++  L  LDLS N +   +P ++G+L  L  +NL    + G +P + G  
Sbjct: 415 IKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNL 474

Query: 253 ENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
            ++M + LS N +SG +PE+L++L  +I    +N
Sbjct: 475 RSIMEIDLSNNDISGPIPEELNQLQNIILLRLEN 508

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
224136952	1215	predicted protein [Populus trichocarpa]	0.947	0.223	0.531	2e-78
255539505	1303	leucine-rich repeat receptor protein kin	0.961	0.211	0.484	1e-76
224120068	1237	predicted protein [Populus trichocarpa]	0.947	0.219	0.512	8e-74
147816099	1147	hypothetical protein VITISV_015708 [Viti	0.996	0.248	0.480	3e-64
225455406	1299	PREDICTED: leucine-rich repeat receptor	0.996	0.219	0.480	3e-64
356574479	1268	PREDICTED: leucine-rich repeat receptor	1.0	0.225	0.475	6e-59
356534151	1269	PREDICTED: leucine-rich repeat receptor	0.965	0.217	0.447	1e-58
449527203	1298	PREDICTED: leucine-rich repeat receptor	0.986	0.217	0.467	3e-56
449446181	1298	PREDICTED: leucine-rich repeat receptor	0.986	0.217	0.467	3e-56
297806755	1180	extra sporogenous cells [Arabidopsis lyr	0.821	0.199	0.470	3e-48

>gi|224136952|ref|XP_002322457.1| predicted protein [Populus trichocarpa] gi|222869453|gb|EEF06584.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/322 (53%), Positives = 208/322 (64%), Gaps = 51/322 (15%)

Query: 16  DEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLS 75
           ++QN D +SLISFKNAL +   L SWN T+ HC WVGVSC  GRV+ L+L T SL+G L 
Sbjct: 27  EDQNTDRESLISFKNALRNPKILSSWNITSRHCSWVGVSCHLGRVVSLILSTQSLRGRLH 86

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
           PSLF LSSL+  DLS N   G++  QVSNLKRLK LSLG N LS  +P +LGVLT+L+TL
Sbjct: 87  PSLFSLSSLTILDLSYNLFVGEIPHQVSNLKRLKHLSLGGNLLSGELPRELGVLTRLQTL 146

Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL--------------------- 172
            LG NSFTG+IP E+GKL  L TLDLS N   G+V  +L                     
Sbjct: 147 QLGPNSFTGKIPPEVGKLSQLNTLDLSSNGLTGSVPSQLSSPVNLFKLESLKSLDISNNS 206

Query: 173 ----------------------------LPPEIGELSLLEIFSSPSCSITGPLPEELSKL 204
                                        PPEIG+LS LE F +PSCSITGP PEE+S L
Sbjct: 207 FSGPIPPEIGNLKNLSDLYIGINLFSGPFPPEIGDLSRLENFFAPSCSITGPFPEEISNL 266

Query: 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264
           K L+ LDLS NPL+CS+PK++G +  L ILNL  ++LNGSIPAELG C+NL +VMLS N+
Sbjct: 267 KSLNKLDLSYNPLRCSIPKSVGAMESLSILNLVYSELNGSIPAELGNCKNLKTVMLSFNS 326

Query: 265 LSGSLPEQLSELPVLIFAAEKN 286
           LSG LPE+LS LP+L F+A+KN
Sbjct: 327 LSGVLPEELSMLPMLTFSADKN 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539505|ref|XP_002510817.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223549932|gb|EEF51419.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/345 (48%), Positives = 217/345 (62%), Gaps = 70/345 (20%)

Query: 12  VEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLK 71
           +   +E +PD+ +L+SFK +L++ + L SWN++NPHC WVGV CQ+GRV  LVL    LK
Sbjct: 26  ITEQEEHSPDKDNLLSFKASLKNPNFLSSWNQSNPHCTWVGVGCQQGRVTSLVLTNQLLK 85

Query: 72  GPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           GPLSPSLF+LSSL+  D+S+N  FG++  Q+S LK LKQL L  NQLS  +PSQLG LTQ
Sbjct: 86  GPLSPSLFYLSSLTVLDVSKNLFFGEIPLQISRLKHLKQLCLAGNQLSGEIPSQLGDLTQ 145

Query: 130 LETLSLGSNSFTGEIPSELGKL-------------------------------------- 151
           L+ L LGSNSF+G+IP E GKL                                      
Sbjct: 146 LQILKLGSNSFSGKIPPEFGKLTQIDTLDLSTNALFGTVPSQLGQMIHLRFLDLGNNLLS 205

Query: 152 -----------KNLKTLDLSGNEFNGTVRDKL-------------------LPPEIGELS 181
                      K+L ++D+S N F+G +  ++                   LPPEIG L+
Sbjct: 206 GSLPFAFFNNLKSLTSMDISNNSFSGVIPPEIGNLTNLTDLYIGINSFSGQLPPEIGSLA 265

Query: 182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQL 241
            LE F SPSC I+GPLPE++SKLK LS LDLS NPL+CS+PK+IG+L+ L ILNL  ++L
Sbjct: 266 KLENFFSPSCLISGPLPEQISKLKSLSKLDLSYNPLRCSIPKSIGKLQNLSILNLAYSEL 325

Query: 242 NGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
           NGSIP ELG C NL ++MLS N+LSGSLPE+L +LP+L F+AEKN
Sbjct: 326 NGSIPGELGNCRNLKTIMLSFNSLSGSLPEELFQLPMLTFSAEKN 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120068|ref|XP_002318234.1| predicted protein [Populus trichocarpa] gi|222858907|gb|EEE96454.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 165/322 (51%), Positives = 213/322 (66%), Gaps = 51/322 (15%)

Query: 16  DEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLS 75
           ++QN D +SLISFKNAL++   L SWN T+ HC WVGVSCQ GRV+ L+L    L+GPL 
Sbjct: 27  EDQNTDRKSLISFKNALKTPKVLSSWNTTSHHCSWVGVSCQLGRVVSLILSAQGLEGPLY 86

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQ---------- 123
            SLF LSSL+  DLS N LFG++  Q+SNLKRLK LSLG+N LS  +PS+          
Sbjct: 87  SSLFDLSSLTVFDLSYNLLFGEVPHQISNLKRLKHLSLGDNLLSGELPSELGLLTQLQTL 146

Query: 124 --------------LGVLTQLETLSLGSNSFTGEIPSELG------KLKNLKTLDLSGNE 163
                         LG L+QL TL L SN FTG +P++LG      KL++L +LD+S N 
Sbjct: 147 QLGPNSFAGKIPPELGRLSQLNTLDLSSNGFTGSVPNQLGSPVTLFKLESLTSLDISNNS 206

Query: 164 FNGTVRDKL-------------------LPPEIGELSLLEIFSSPSCSITGPLPEELSKL 204
           F+G +  ++                   LPP+IG+LS L  F +PSC+ITGPLPEE+S L
Sbjct: 207 FSGPIPPEIGNLKNLSDLYIGVNLFSGPLPPQIGDLSRLVNFFAPSCAITGPLPEEISNL 266

Query: 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264
           K LS LDLS NPLKCS+PK++G++  L IL L  ++LNGSIPAELG C+NL ++MLS N+
Sbjct: 267 KSLSKLDLSYNPLKCSIPKSVGKMESLSILYLVYSELNGSIPAELGNCKNLKTLMLSFNS 326

Query: 265 LSGSLPEQLSELPVLIFAAEKN 286
           LSG LPE+LS LP+L F+A+KN
Sbjct: 327 LSGVLPEELSMLPMLTFSADKN 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816099|emb|CAN61953.1| hypothetical protein VITISV_015708 [Vitis vinifera]

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 172/358 (48%), Positives = 211/358 (58%), Gaps = 73/358 (20%)

Query: 2   LFVLESHQAFVEADDEQN---PDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRG 58
           LFV +       A  +QN   P+ + LISFKNAL++   L SWN T   C W GV CQ G
Sbjct: 10  LFVFQLLFCVSNAIADQNGEDPEAKLLISFKNALQNPQMLSSWNSTVSRCQWEGVLCQNG 69

Query: 59  RVIWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQL 116
           RV  LVLPT SL+G LSPSLF LSSL   DLS N   G LS  ++ L+RLK L LG+N+L
Sbjct: 70  RVTSLVLPTQSLEGALSPSLFSLSSLIVLDLSGNLFSGHLSPDIAGLRRLKHLLLGDNEL 129

Query: 117 SDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG--------------------------- 149
           S  +P QLG LTQL TL LG NSF G+IP ELG                           
Sbjct: 130 SGEIPRQLGELTQLVTLKLGPNSFIGKIPPELGDLTWLRSLDLSGNSLTGDLPTQIGNLT 189

Query: 150 ----------------------KLKNLKTLDLSGNEFNGTVRDKL--------------- 172
                                  L++L +LD+S N F+G +  ++               
Sbjct: 190 HLRLLDVXNNLLSGPLSPTLFTNLQSLISLDVSNNSFSGNIPPEIGNLKSLTDLYIGINH 249

Query: 173 ----LPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGEL 228
               LPPEIG LS L+ F SPSCSI GPLPE++S+LK L+ LDLS NPLKCS+PK+IG+L
Sbjct: 250 FSGQLPPEIGNLSSLQNFFSPSCSIRGPLPEQISELKSLNKLDLSYNPLKCSIPKSIGKL 309

Query: 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
           + L ILN    +LNGSIPAELGKC NL ++MLS N++SGSLPE+LSELP+L F+AEKN
Sbjct: 310 QNLTILNFVYAELNGSIPAELGKCRNLKTLMLSFNSISGSLPEELSELPMLSFSAEKN 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455406|ref|XP_002273978.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 172/358 (48%), Positives = 211/358 (58%), Gaps = 73/358 (20%)

Query: 2   LFVLESHQAFVEADDEQN---PDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRG 58
           LFV +       A  +QN   P+ + LISFKNAL++   L SWN T   C W GV CQ G
Sbjct: 10  LFVFQLLFCVSNAIADQNGEDPEAKLLISFKNALQNPQMLSSWNSTVSRCQWEGVLCQNG 69

Query: 59  RVIWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQL 116
           RV  LVLPT SL+G LSPSLF LSSL   DLS N   G LS  ++ L+RLK L LG+N+L
Sbjct: 70  RVTSLVLPTQSLEGALSPSLFSLSSLIVLDLSGNLFSGHLSPDIAGLRRLKHLLLGDNEL 129

Query: 117 SDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG--------------------------- 149
           S  +P QLG LTQL TL LG NSF G+IP ELG                           
Sbjct: 130 SGEIPRQLGELTQLVTLKLGPNSFIGKIPPELGDLTWLRSLDLSGNSLTGDLPTQIGNLT 189

Query: 150 ----------------------KLKNLKTLDLSGNEFNGTVRDKL--------------- 172
                                  L++L +LD+S N F+G +  ++               
Sbjct: 190 HLRLLDVGNNLLSGPLSPTLFTNLQSLISLDVSNNSFSGNIPPEIGNLKSLTDLYIGINH 249

Query: 173 ----LPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGEL 228
               LPPEIG LS L+ F SPSCSI GPLPE++S+LK L+ LDLS NPLKCS+PK+IG+L
Sbjct: 250 FSGQLPPEIGNLSSLQNFFSPSCSIRGPLPEQISELKSLNKLDLSYNPLKCSIPKSIGKL 309

Query: 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
           + L ILN    +LNGSIPAELGKC NL ++MLS N++SGSLPE+LSELP+L F+AEKN
Sbjct: 310 QNLTILNFVYAELNGSIPAELGKCRNLKTLMLSFNSISGSLPEELSELPMLSFSAEKN 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574479|ref|XP_003555374.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 158/332 (47%), Positives = 204/332 (61%), Gaps = 46/332 (13%)

Query: 1   MLFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRV 60
           +L  L     F+    +Q+ D  SL+SFK+ L++ H L SW+ +  HC W+GV+CQ GRV
Sbjct: 8   VLSYLVVFHIFLCTTADQSNDRLSLLSFKDGLQNPHVLTSWHPSTLHCDWLGVTCQLGRV 67

Query: 61  IWLVLPTHSLKGPLSPSLFFLSSLSDLS--QNPLFGQLSRQVSNLKRLKQLSLGENQLSD 118
             L LP+ +L+G LSPSLF LSSLS L+   N L G++  ++  L +L+ L LG N L+ 
Sbjct: 68  TSLSLPSRNLRGTLSPSLFSLSSLSLLNLCDNQLSGEIPSELGGLLQLQTLRLGSNSLAG 127

Query: 119 FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL------ 172
            +P ++G+LT+L TL L  NS  GE+P  +G L  L+ LDLS N F+G++   L      
Sbjct: 128 KIPPEVGLLTKLRTLDLSGNSLAGEVPESVGNLTKLEFLDLSNNFFSGSLPVSLFTGAKS 187

Query: 173 --------------------------------------LPPEIGELSLLEIFSSPSCSIT 194
                                                 LP EIG LS LEI  SPSCSI 
Sbjct: 188 LISADISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPKEIGLLSKLEILYSPSCSIE 247

Query: 195 GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN 254
           GPLPEE++KLK L+ LDLS NPL+CS+PK IGEL  L IL+L   QLNGS+PAELG C+N
Sbjct: 248 GPLPEEMAKLKSLTKLDLSYNPLRCSIPKFIGELESLKILDLVFAQLNGSVPAELGNCKN 307

Query: 255 LMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
           L SVMLS N+LSGSLPE+LSELP+L F+AEKN
Sbjct: 308 LRSVMLSFNSLSGSLPEELSELPMLAFSAEKN 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534151|ref|XP_003535621.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/322 (44%), Positives = 190/322 (59%), Gaps = 46/322 (14%)

Query: 11  FVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSL 70
           F     +Q+ D+ SL+SFK  L++ H L SW+ + PHC W+GV+CQ GRV  L LP+ SL
Sbjct: 19  FCAIAADQSNDKLSLLSFKEGLQNPHVLNSWHPSTPHCDWLGVTCQLGRVTSLSLPSRSL 78

Query: 71  KGP--LSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128
           +G    S       SL +L  N L G++  ++  L +L+ L LG N L+  +P ++ +LT
Sbjct: 79  RGTLSPSLFSLSSLSLLNLHDNQLSGEIPGELGRLPQLETLRLGSNSLAGKIPPEVRLLT 138

Query: 129 QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL---------------- 172
            L TL L  N+  GE+   +G L  L+ LDLS N F+G++   L                
Sbjct: 139 SLRTLDLSGNALAGEVLESVGNLTRLEFLDLSNNFFSGSLPASLFTGARSLISVDISNNS 198

Query: 173 ----------------------------LPPEIGELSLLEIFSSPSCSITGPLPEELSKL 204
                                       LP EIG LS LEIF SPSCSI GPLPEE++ L
Sbjct: 199 FSGVIPPEIGNWRNISALYVGINNLSGTLPREIGLLSKLEIFYSPSCSIEGPLPEEMANL 258

Query: 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264
           K L+ LDLS NPL+CS+P  IGEL  L IL+L   QLNGS+PAE+GKC+NL S+MLS N+
Sbjct: 259 KSLTKLDLSYNPLRCSIPNFIGELESLKILDLVFAQLNGSVPAEVGKCKNLRSLMLSFNS 318

Query: 265 LSGSLPEQLSELPVLIFAAEKN 286
           LSGSLPE+LS+LP+L F+AEKN
Sbjct: 319 LSGSLPEELSDLPMLAFSAEKN 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527203|ref|XP_004170602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Cucumis sativus]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 166/355 (46%), Positives = 211/355 (59%), Gaps = 73/355 (20%)

Query: 2   LFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVI 61
           L +L S+ A ++  +E   + +SL+SFK +LE+S  ++ WN + PHC+WVGVSC+ GRV 
Sbjct: 16  LCILSSNGATLQ--NEIIIERESLVSFKASLETSE-ILPWNSSVPHCFWVGVSCRLGRVT 72

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLSDLS--QNPLFGQLSRQVSNLKRLKQLSLGENQLSDF 119
            L L + SLKG LS SLF L SLS L    N L+G +  Q+ NL+ LK L+LGENQ S  
Sbjct: 73  ELSLSSLSLKGQLSRSLFDLLSLSVLDLSNNLLYGSIPPQIYNLRSLKVLALGENQFSGD 132

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTL---------------------- 157
            P +L  LTQLE L LG+N F+G+IP ELG LK L+TL                      
Sbjct: 133 FPIELTELTQLENLKLGANLFSGKIPPELGNLKQLRTLDLSSNAFVGNVPPHIGNLTKIL 192

Query: 158 ---------------------------DLSGNEFNGTVRDKL------------------ 172
                                      D+S N F+G++  ++                  
Sbjct: 193 SLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLAGLYIGINHFSG 252

Query: 173 -LPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231
            LPPE+G L LLE F SPSCS+TGPLP+ELSKLK LS LDLS NPL CS+PK IGEL+ L
Sbjct: 253 ELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNL 312

Query: 232 GILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
            ILNL  T+LNGSIPAELG+C NL ++MLS N LSG LP +LSEL +L F+AE+N
Sbjct: 313 TILNLVYTELNGSIPAELGRCRNLKTLMLSFNYLSGVLPPELSELSMLTFSAERN 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446181|ref|XP_004140850.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Cucumis sativus]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 166/355 (46%), Positives = 211/355 (59%), Gaps = 73/355 (20%)

Query: 2   LFVLESHQAFVEADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVI 61
           L +L S+ A ++  +E   + +SL+SFK +LE+S  ++ WN + PHC+WVGVSC+ GRV 
Sbjct: 16  LCILSSNGATLQ--NEIIIERESLVSFKASLETSE-ILPWNSSVPHCFWVGVSCRLGRVT 72

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLSDLS--QNPLFGQLSRQVSNLKRLKQLSLGENQLSDF 119
            L L + SLKG LS SLF L SLS L    N L+G +  Q+ NL+ LK L+LGENQ S  
Sbjct: 73  ELSLSSLSLKGQLSRSLFDLLSLSVLDLSNNLLYGSIPPQIYNLRSLKVLALGENQFSGD 132

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTL---------------------- 157
            P +L  LTQLE L LG+N F+G+IP ELG LK L+TL                      
Sbjct: 133 FPIELTELTQLENLKLGANLFSGKIPPELGNLKQLRTLDLSSNAFVGNVPPHIGNLTKIL 192

Query: 158 ---------------------------DLSGNEFNGTVRDKL------------------ 172
                                      D+S N F+G++  ++                  
Sbjct: 193 SLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLAGLYIGINHFSG 252

Query: 173 -LPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231
            LPPE+G L LLE F SPSCS+TGPLP+ELSKLK LS LDLS NPL CS+PK IGEL+ L
Sbjct: 253 ELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNL 312

Query: 232 GILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
            ILNL  T+LNGSIPAELG+C NL ++MLS N LSG LP +LSEL +L F+AE+N
Sbjct: 313 TILNLVYTELNGSIPAELGRCRNLKTLMLSFNYLSGVLPPELSELSMLTFSAERN 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806755|ref|XP_002871261.1| extra sporogenous cells [Arabidopsis lyrata subsp. lyrata] gi|297317098|gb|EFH47520.1| extra sporogenous cells [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/253 (47%), Positives = 159/253 (62%), Gaps = 18/253 (7%)

Query: 47  HCYWVGVSCQRGRV----------IWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFG 94
           HC WVGV+C  GR+            L L  +   G +   ++ L  L   DLS N L G
Sbjct: 56  HCDWVGVTCLFGRIPKEISTLKNLKELRLAGNQFSGKIPSEIWKLKQLQTLDLSGNSLTG 115

Query: 95  QLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV-LTQLETLSLGSNSFTGEIPSELGKLKN 153
            L  Q+S L +L  L L +N  S  +P    +    L +L + +NS +GEIP E+GKL N
Sbjct: 116 LLPSQLSELHQLLYLDLSDNHFSGSLPPSFFLSFPALSSLDVSNNSLSGEIPPEIGKLSN 175

Query: 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLS 213
           L  L +  N F+G +     PPE+G +SLL+ F +PSC   GPLP+E+SKLK L+ LDLS
Sbjct: 176 LSDLYMGLNSFSGQI-----PPEVGNISLLKNFGAPSCFFKGPLPKEISKLKHLAKLDLS 230

Query: 214 ENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL 273
            NPLKCS+PK+ GEL+ L ILNL S +L G IP ELGKC++L ++MLS N+LSGSLP +L
Sbjct: 231 YNPLKCSIPKSFGELQNLSILNLVSAELIGLIPPELGKCKSLKTLMLSFNSLSGSLPLEL 290

Query: 274 SELPVLIFAAEKN 286
           SE+P+L F+AE+N
Sbjct: 291 SEIPLLTFSAERN 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.671	0.161	0.515	1.3e-44
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.965	0.292	0.311	2.1e-29
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.884	0.232	0.349	5.7e-29
UNIPROTKB|Q8RZV7	1294	P0413C03.22 "Putative extra sp	0.671	0.148	0.363	3.1e-28
TAIR|locus:2052367	462	RLP29 "receptor like protein 2	0.636	0.393	0.372	3.5e-28
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.884	0.202	0.324	5.1e-28
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.877	0.308	0.312	1.3e-27
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.919	0.230	0.315	1.5e-27
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.671	0.196	0.333	4e-27
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.646	0.309	0.368	4.6e-27

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.3e-44, P = 1.3e-44
 Identities = 102/198 (51%), Positives = 134/198 (67%)

Query:    90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV-LTQLETLSLGSNSFTGEIPSEL 148
             N L G L R +S L +L  L L +N  S  +P    + L  L +L + +NS +GEIP E+
Sbjct:   123 NSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEI 182

Query:   149 GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS 208
             GKL NL  L +  N F+G +     P EIG +SLL+ F++PSC   GPLP+E+SKLK L+
Sbjct:   183 GKLSNLSNLYMGLNSFSGQI-----PSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLA 237

Query:   209 MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268
              LDLS NPLKCS+PK+ GEL  L ILNL S +L G IP ELG C++L S+MLS N+LSG 
Sbjct:   238 KLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGP 297

Query:   269 LPEQLSELPVLIFAAEKN 286
             LP +LSE+P+L F+AE+N
Sbjct:   298 LPLELSEIPLLTFSAERN 315

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 91/292 (31%), Positives = 135/292 (46%)

Query:     6 ESHQAFVEADDE---QNPDEQSLISFKNALESSHNLV-SWNKTNPHCYWVGVSC--QRGR 59
             E   A +E  +E     P         N+  S H    SW   +  C W G++C  + G 
Sbjct:    41 EQRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCNWEGITCDTKSGE 100

Query:    60 VIWLVLPTH----XXXXXXXXXXXXXXXXXXXXQNPLFGQLSRQVSNLKRLKQLSLGENQ 115
             VI L L                           QN L G++   + NL  L  L L  NQ
Sbjct:   101 VIELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQ 160

Query:   116 LSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP 175
                 +PS +  L++L +L L SN F+G+IPS +G L +L +L+LS N+F+G +     P 
Sbjct:   161 FLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSNQFSGQI-----PS 215

Query:   176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235
              IG LS L   S PS    G +P  +  L  L+ L LS N     +P + G L +L +L 
Sbjct:   216 SIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQ 275

Query:   236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLI-FAAEKN 286
             + S +L+G++P  L     L +++LS N  +G++P  +S L  L+ F A  N
Sbjct:   276 VDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNN 327

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 5.7e-29, P = 5.7e-29
 Identities = 94/269 (34%), Positives = 143/269 (53%)

Query:    21 DEQ--SLISFKNALESSHN-LVSW--NKTNPHCYWVGVSC-QRGRV--IWL-VLPTHXXX 71
             DEQ  +L+S+K+ L  S + L SW  +++NP C WVG+ C +RG+V  I L V+      
Sbjct:    29 DEQGLALLSWKSQLNISGDALSSWKASESNP-CQWVGIKCNERGQVSEIQLQVMDFQGPL 87

Query:    72 XXXXXXXXXXXXXXXXXQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
                                 L G + +++ +L  L+ L L +N LS  +P  +  L +L+
Sbjct:    88 PATNLRQIKSLTLLSLTSVNLTGSIPKELGDLSELEVLDLADNSLSGEIPVDIFKLKKLK 147

Query:   132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF-SSPS 190
              LSL +N+  G IPSELG L NL  L L  N+  G +     P  IGEL  LEIF +  +
Sbjct:   148 ILSLNTNNLEGVIPSELGNLVNLIELTLFDNKLAGEI-----PRTIGELKNLEIFRAGGN 202

Query:   191 CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELG 250
              ++ G LP E+   + L  L L+E  L   +P +IG L+K+  + L ++ L+G IP E+G
Sbjct:   203 KNLRGELPWEIGNCESLVTLGLAETSLSGRLPASIGNLKKVQTIALYTSLLSGPIPDEIG 262

Query:   251 KCENLMSVMLSCNALSGSLPEQLSELPVL 279
              C  L ++ L  N++SGS+P  +  L  L
Sbjct:   263 NCTELQNLYLYQNSISGSIPVSMGRLKKL 291

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 306 (112.8 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
 Identities = 72/198 (36%), Positives = 105/198 (53%)

Query:    90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG 149
             N   G +     NL  L      +N L+  +   +  LT L TL L SNSF G IP E+G
Sbjct:   195 NTFNGSIPATFGNLSCLLHFDASQNNLTGSIFPGITSLTNLLTLDLSSNSFEGTIPREIG 254

Query:   150 KLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSM 209
             +L+NL+ L L  N+  G +     P EIG L  L++     C  TG +P  +S L  L+ 
Sbjct:   255 QLENLELLILGKNDLTGRI-----PQEIGSLKQLKLLHLEECQFTGKIPWSISGLSSLTE 309

Query:   210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL 269
             LD+S+N     +P ++GEL  L  L   +  L+G++P ELG C+ L  + LS NAL G +
Sbjct:   310 LDISDNNFDAELPSSMGELGNLTQLIAKNAGLSGNMPKELGNCKKLTVINLSFNALIGPI 369

Query:   270 PEQLSELPVLI-FAAEKN 286
             PE+ ++L  ++ F  E N
Sbjct:   370 PEEFADLEAIVSFFVEGN 387

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2052367 RLP29 "receptor like protein 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
 Identities = 70/188 (37%), Positives = 104/188 (55%)

Query:    90 NP-LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL 148
             NP L GQ+  ++S+LK L+ L+L +N+L+  +P  +  L  L  L L  N  TG+IP +L
Sbjct:   150 NPSLSGQIPPRISSLKSLQILTLSQNRLTGDIPPAIFSLKSLVHLDLSYNKLTGKIPLQL 209

Query:   149 GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS 208
             G L NL  LDLS N   GT+     PP I +L +L+     S S+ G +PE + KL+ LS
Sbjct:   210 GNLNNLVGLDLSYNSLTGTI-----PPTISQLGMLQKLDLSSNSLFGRIPEGVEKLRSLS 264

Query:   209 MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268
              + LS N LK + PK I  L+ L    + +  +  ++P ELG    L  + L  +  SG 
Sbjct:   265 FMALSNNKLKGAFPKGISNLQSLQYFIMDNNPMFVALPVELGFLPKLQELQLENSGYSGV 324

Query:   269 LPEQLSEL 276
             +PE  ++L
Sbjct:   325 IPESYTKL 332

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 5.1e-28, P = 5.1e-28
 Identities = 87/268 (32%), Positives = 126/268 (47%)

Query:    19 NPDEQSLISFKNAL----ESSHNLVSWNKTN-PHCYWVGVSCQR-G--RVIWLVLPTHXX 70
             N D Q+L+  K +L    +    L  WN  N  +C W GV+C   G  RVI L L     
Sbjct:    24 NNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGL 83

Query:    71 XXXXX--XXXXXXXXXXXXXQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128
                                  N L G +   +SNL  L+ L L  NQL+  +PSQLG L 
Sbjct:    84 TGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLV 143

Query:   129 QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSS 188
              + +L +G N   G+IP  LG L NL+ L L+     G +     P ++G L  ++    
Sbjct:   144 NIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPI-----PSQLGRLVRVQSLIL 198

Query:   189 PSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE 248
                 + GP+P EL     L++   +EN L  ++P  +G L  L ILNL +  L G IP++
Sbjct:   199 QDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ 258

Query:   249 LGKCENLMSVMLSCNALSGSLPEQLSEL 276
             LG+   L  + L  N L G +P+ L++L
Sbjct:   259 LGEMSQLQYLSLMANQLQGLIPKSLADL 286

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 319 (117.4 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 83/266 (31%), Positives = 132/266 (49%)

Query:    21 DEQSLISFKNAL--ESSHNLVSWNKTN--PHCYWVGVSCQRG---RVIWLVLPTHXXXXX 73
             DE +L+SFK++L  +   +L SWN +    HC WVGV C R    RV+ L L +      
Sbjct:    34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93

Query:    74 XXXXXXXXXXXXXX--XQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
                               N L G++ +++S L RL+QL L  N LS  +P+ LG LT L 
Sbjct:    94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLS 153

Query:   132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC 191
              L L +N+ +G IPS LGKL  L  L L+ N  +G++     P   G+L  L   S    
Sbjct:   154 VLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSI-----PSSFGQLRRLSFLSLAFN 208

Query:   192 SITGPLPEELSKLKFLSMLDLSENPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAELG 250
             +++G +P+ +  +  L++ ++  N L  ++P  A   L  L  + +   Q +G IPA +G
Sbjct:   209 NLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIG 268

Query:   251 KCENLMSVMLSCNALSGSLPEQLSEL 276
                N+    +  N+ SG +P ++  +
Sbjct:   269 NASNISIFTIGLNSFSGVVPPEIGRM 294

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 88/279 (31%), Positives = 139/279 (49%)

Query:    11 FVEADDEQNPDEQSLISFKNALE---SSHNLVSWNKT-NPHCY-WVGVSCQRGRVIWLV- 64
             F  +D EQNP+   L S+ ++     SS +L +WN   N  C  W  ++C     I  + 
Sbjct:    28 FSLSDAEQNPEASILYSWLHSSSPTPSSLSLFNWNSIDNTPCNNWTFITCSSQGFITDID 87

Query:    65 ---LPTHXXXXXXXXXXXXXXXXXXXXQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP 121
                +P                       N L G L   + +   LK L L  N L   +P
Sbjct:    88 IESVPLQLSLPKNLPAFRSLQKLTISGAN-LTGTLPESLGDCLGLKVLDLSSNGLVGDIP 146

Query:   122 SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS 181
               L  L  LETL L SN  TG+IP ++ K   LK+L L  N   G++     P E+G+LS
Sbjct:   147 WSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSI-----PTELGKLS 201

Query:   182 LLEIFS-SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ 240
              LE+     +  I+G +P E+     L++L L+E  +  ++P ++G+L+KL  L++ +T 
Sbjct:   202 GLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTM 261

Query:   241 LNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
             ++G IP++LG C  L+ + L  N+LSGS+P ++ +L  L
Sbjct:   262 ISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKL 300

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 4.0e-27, P = 4.0e-27
 Identities = 66/198 (33%), Positives = 111/198 (56%)

Query:    90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG 149
             N L G +  ++ N+ +L  L L +N L+  +P +LG LT L  L++ +N   G IP  L 
Sbjct:   317 NKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLS 376

Query:   150 KLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSM 209
                NL +L++ GN+F+GT+     P    +L  +   +  S +I GP+P ELS++  L  
Sbjct:   377 SCTNLNSLNVHGNKFSGTI-----PRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDT 431

Query:   210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL 269
             LDLS N +   +P ++G+L  L  +NL    + G +P + G   ++M + LS N +SG +
Sbjct:   432 LDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPI 491

Query:   270 PEQLSELP-VLIFAAEKN 286
             PE+L++L  +++   E N
Sbjct:   492 PEELNQLQNIILLRLENN 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 4.6e-27, Sum P(2) = 4.6e-27
 Identities = 70/190 (36%), Positives = 102/190 (53%)

Query:    90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG 149
             N   G +   + N  +L+ L L +N+L   +P+ L +L  L  L + +NS  G +     
Sbjct:   203 NQFTGTIPESIGNCSKLEILYLHKNKLVGSLPASLNLLESLTDLFVANNSLRGTVQFGST 262

Query:   150 KLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSM 209
             K +NL TLDLS NEF G V     PPE+G  S L+     S +++G +P  L  LK L++
Sbjct:   263 KCRNLVTLDLSYNEFEGGV-----PPELGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTI 317

Query:   210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL 269
             L+LSEN L  S+P  +G    L +L L   QL G IP+ LGK   L S+ L  N  SG +
Sbjct:   318 LNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEI 377

Query:   270 PEQLSELPVL 279
             P ++ ++  L
Sbjct:   378 PIEIWKIQSL 387

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  138 bits (349), Expect = 1e-36
 Identities = 86/261 (32%), Positives = 133/261 (50%), Gaps = 12/261 (4%)

Query: 25  LISFKNAL-ESSHNLVSWNKTNPHCYWVGVSCQR-GRVIWLVLPTHSLKGPLSPSLFFLS 82
           L+SFK+++ +    L +WN +   C W G++C    RV+ + L   ++ G +S ++F L 
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP 93

Query: 83  SLS--DLSQNPLFGQLSRQVSNL-KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNS 139
            +   +LS N L G +   +      L+ L+L  N  +  +P   G +  LETL L +N 
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM 151

Query: 140 FTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPE 199
            +GEIP+++G   +LK LDL GN   G +     P  +  L+ LE  +  S  + G +P 
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKI-----PNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 200 ELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM 259
           EL ++K L  + L  N L   +P  IG L  L  L+L    L G IP+ LG  +NL  + 
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 260 LSCNALSGSLPEQLSELPVLI 280
           L  N LSG +P  +  L  LI
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLI 287

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  123 bits (309), Expect = 2e-31
 Identities = 80/219 (36%), Positives = 113/219 (51%), Gaps = 10/219 (4%)

Query: 55  CQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSD--LSQNPLFGQLSRQVSNLKRLKQLSLG 112
           C  G +  L+L ++SL+G +  SL    SL    L  N   G+L  + + L  +  L + 
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 113 ENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL 172
            N L   + S+   +  L+ LSL  N F G +P   G  K L+ LDLS N+F+G V  KL
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495

Query: 173 LP-PEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231
               E+ +L L E        ++G +P+ELS  K L  LDLS N L   +P +  E+  L
Sbjct: 496 GSLSELMQLKLSE------NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 232 GILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
             L+L   QL+G IP  LG  E+L+ V +S N L GSLP
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (301), Expect = 2e-30
 Identities = 81/206 (39%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 70  LKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL 127
           L G +  SL  L+SL    L+ N L GQ+ R++  +K LK + LG N LS  +P ++G L
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187
           T L  L L  N+ TG IPS LG LKNL+ L L  N+ +G +     PP I  L  L    
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI-----PPSIFSLQKLISLD 290

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA 247
               S++G +PE + +L+ L +L L  N     +P A+  L +L +L L S + +G IP 
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Query: 248 ELGKCENLMSVMLSCNALSGSLPEQL 273
            LGK  NL  + LS N L+G +PE L
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  111 bits (278), Expect = 2e-27
 Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF 119
           W+ L  ++L G +   +  L+SL+  DL  N L G +   + NLK L+ L L +N+LS  
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179
           +P  +  L +L +L L  NS +GEIP  + +L+NL+ L L  N F G +     P  +  
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-----PVALTS 330

Query: 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST 239
           L  L++    S   +G +P+ L K   L++LDLS N L   +P+ +     L  L L S 
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 240 QLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
            L G IP  LG C +L  V L  N+ SG LP + ++LP++ F
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 9e-27
 Identities = 71/194 (36%), Positives = 100/194 (51%), Gaps = 6/194 (3%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           DLS N L G++   + +   L +L L  N L   +P  LG    L  + L  NSF+GE+P
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
           SE  KL  +  LD+S N   G +  +       ++  L++ S       G LP+     K
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKW-----DMPSLQMLSLARNKFFGGLPD-SFGSK 475

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
            L  LDLS N    +VP+ +G L +L  L L   +L+G IP EL  C+ L+S+ LS N L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 266 SGSLPEQLSELPVL 279
           SG +P   SE+PVL
Sbjct: 536 SGQIPASFSEMPVL 549

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (264), Expect = 2e-25
 Identities = 84/257 (32%), Positives = 118/257 (45%), Gaps = 44/257 (17%)

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF 119
           +L L  + L GP+ PS+F L  L   DLS N L G++   V  L+ L+ L L  N  +  
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL------- 172
           +P  L  L +L+ L L SN F+GEIP  LGK  NL  LDLS N   G + + L       
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 173 ------------LPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK-- 218
                       +P  +G    L        S +G LP E +KL  +  LD+S N L+  
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 219 ---------------CSVPKAIGEL------RKLGILNLGSTQLNGSIPAELGKCENLMS 257
                           +  K  G L      ++L  L+L   Q +G++P +LG    LM 
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503

Query: 258 VMLSCNALSGSLPEQLS 274
           + LS N LSG +P++LS
Sbjct: 504 LKLSENKLSGEIPDELS 520

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 50  WVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQL 109
           W G  CQ                      +F+  L  L    L G +   +S L+ L+ +
Sbjct: 404 WSGADCQFDSTK---------------GKWFIDGL-GLDNQGLRGFIPNDISKLRHLQSI 447

Query: 110 SLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTV 168
           +L  N +   +P  LG +T LE L L  NSF G IP  LG+L +L+ L+L+GN  +G V
Sbjct: 448 NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 29/84 (34%), Positives = 51/84 (60%)

Query: 195 GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN 254
           G +P ++SKL+ L  ++LS N ++ ++P ++G +  L +L+L     NGSIP  LG+  +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 255 LMSVMLSCNALSGSLPEQLSELPV 278
           L  + L+ N+LSG +P  L    +
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 9e-12
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 6/115 (5%)

Query: 109 LSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTV 168
           L L    L  F+P+ +  L  L++++L  NS  G IP  LG + +L+ LDLS N FNG++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 169 RDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSENPLKCSVP 222
                P  +G+L+ L I +    S++G +P  L  +L   +  + ++N   C +P
Sbjct: 483 -----PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 29/118 (24%)

Query: 133 LSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192
           L L +    G IP+++ KL++L++++LSGN   G +     PP +G ++ LE+       
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-----PPSLGSITSLEV------- 470

Query: 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELG 250
                            LDLS N    S+P+++G+L  L ILNL    L+G +PA LG
Sbjct: 471 -----------------LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
           F+  L L    L+  +P  I +LR L  +NL    + G+IP  LG   +L  + LS N+ 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 266 SGSLPEQLSELPVL 279
           +GS+PE L +L  L
Sbjct: 479 NGSIPESLGQLTSL 492

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 11/199 (5%)

Query: 68  HSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL 127
            SL G  +          DL+ N L   +S  +  L  L  L L  N ++D  P    + 
Sbjct: 81  SSLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLK 139

Query: 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187
           + L+ L L  N     +PS L  L NLK LDLS N+ +       LP  +  LS L    
Sbjct: 140 SNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD------LPKLLSNLSNLNNLD 192

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA 247
                I+  LP E+  L  L  LDLS N +   +  ++  L+ L  L L + +L   +P 
Sbjct: 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249

Query: 248 ELGKCENLMSVMLSCNALS 266
            +G   NL ++ LS N +S
Sbjct: 250 SIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF-LSMLDL 212
           + ++DLSG   +G      +   I  L  ++  +  +  ++GP+P+++      L  L+L
Sbjct: 71  VVSIDLSGKNISGK-----ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQ 272
           S N    S+P+  G +  L  L+L +  L+G IP ++G   +L  + L  N L G +P  
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 273 LSELPVLIF 281
           L+ L  L F
Sbjct: 184 LTNLTSLEF 192

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 19 NPDEQSLISFKNALESSHN--LVSWNKTNP-HCYWVGVSC 55
          N D  +L++FK++L    +  L SWN ++   C W GV+C
Sbjct: 2  NDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 54/166 (32%), Positives = 73/166 (43%), Gaps = 16/166 (9%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           DLS N L   L + +SNL  L  L L  N++SD +P ++ +L+ LE L L +NS   E+ 
Sbjct: 169 DLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELL 225

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLL--EIFSSPSCSITGPLPEELSK 203
           S L  LKNL  L+LS N+             +  L L   +I S  S          L  
Sbjct: 226 SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS----------LGS 275

Query: 204 LKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
           L  L  LDLS N L  +    I  L  L  L L       ++  +L
Sbjct: 276 LTNLRELDLSGNSLS-NALPLIALLLLLLELLLNLLLTLKALELKL 320

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           DLS N L GQ+    S +  L QL L +NQLS  +P  LG +  L  +++  N   G +P
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Query: 146 S 146
           S
Sbjct: 589 S 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 65  LPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPS 122
           L  +S++G + PSL  ++SL   DLS N   G +   +  L  L+ L+L  N LS  VP+
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 123 QLG 125
            LG
Sbjct: 509 ALG 511

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.72
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
PLN03150	623	hypothetical protein; Provisional	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.53
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.37
PLN03150	623	hypothetical protein; Provisional	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.76
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.0
PRK15386	426	type III secretion protein GogB; Provisional	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.3
KOG4308	478	consensus LRR-containing protein [Function unknown	95.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.55
KOG4308	478	consensus LRR-containing protein [Function unknown	94.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.38
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.37
KOG1947	482	consensus Leucine rich repeat proteins, some prote	90.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.58
smart00370	26	LRR Leucine-rich repeats, outliers.	89.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.46
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.3

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.6e-36  Score=289.01  Aligned_cols=272  Identities=31%  Similarity=0.564  Sum_probs=177.4

Q ss_pred             hcCCCChhhHHHHHHHHHhccCCCC-CCCCCCCCCCCCccceEecCC-CEEEEEcCCCCcccccCccccccccc--cccC
Q 041406           13 EADDEQNPDEQSLISFKNALESSHN-LVSWNKTNPHCYWVGVSCQRG-RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLS   88 (286)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~w~~~~~~c~w~gv~c~~~-~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~   88 (286)
                      ...-..+.|+.||++||+++.++.+ +.+|+...+.|.|.|++|... +|+.|+++++++.|.++..+..+++|  |+++
T Consensus        22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls  101 (968)
T PLN00113         22 NFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS  101 (968)
T ss_pred             HccCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence            3444466899999999999976555 889987666699999999864 99999999999999999999999999  9999


Q ss_pred             CCCCccccchhhc-CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccc
Q 041406           89 QNPLFGQLSRQVS-NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGT  167 (286)
Q Consensus        89 ~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  167 (286)
                      +|.+.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus       102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence            9999888887654 788888888888877665443  3355566666666666555555555566666666665555433


Q ss_pred             cCC-------------------CCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCC
Q 041406          168 VRD-------------------KLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGEL  228 (286)
Q Consensus       168 ~~~-------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  228 (286)
                      .|.                   ..+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..++++
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            210                   0123444445555555555555554455555555555555555555554555555555


Q ss_pred             CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       229 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.+++ |+.|++++|
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n  318 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN  318 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence            5555555555555555555555555555555555555555555555555 555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=2.8e-28  Score=236.39  Aligned_cols=222  Identities=33%  Similarity=0.530  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406           60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS  137 (286)
Q Consensus        60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  137 (286)
                      ++.|++++|.+.+.+|..+..+++|  |++++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence            3344444444444444444444454  55555555555555555555555555555555544455555555555555555


Q ss_pred             CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC
Q 041406          138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL  217 (286)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l  217 (286)
                      |.+.+.+|..+..+++|++|++++|.+.+.     +|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+
T Consensus       222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCceeccc-----cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            555545555555555555555555554432     244555555555555555555555555555555555555555555


Q ss_pred             CcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          218 KCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       218 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..++ |+.|++++|
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            555555555555555555555555555555555555555555555555555555555555 555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=5.8e-24  Score=183.66  Aligned_cols=222  Identities=24%  Similarity=0.209  Sum_probs=129.8

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEe--
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLS--  134 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--  134 (286)
                      +++.|+|++|.|+..--.+|..+..|  +.|+.|+++...+..|..+++|+.|+|..|+|....-..|.++++|+.|.  
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            56677777776665555556666666  66666666655556666666666666666665433223344444444444  


Q ss_pred             ----------------------cCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCc
Q 041406          135 ----------------------LGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS  192 (286)
Q Consensus       135 ----------------------l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~  192 (286)
                                            |+.|+++..-..++..+++|+.|+++.|.|....     ++++.-.++|++|++++|+
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-----~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-----IDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee-----cchhhhcccceeEeccccc
Confidence                                  4444444322333444444444444444443222     2344444455555555555


Q ss_pred             ccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCc---cCCCCCCCCEEEcccCcCcccc
Q 041406          193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA---ELGKCENLMSVMLSCNALSGSL  269 (286)
Q Consensus       193 ~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~  269 (286)
                      ++...+..|..++.|+.|.++.|.++..--..|..+++|+.|+|+.|.++..+.+   .|.++++|+.|++.+|++. .+
T Consensus       329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I  407 (873)
T KOG4194|consen  329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SI  407 (873)
T ss_pred             cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ec
Confidence            5533344444455555555555555422223455667788888888877764432   4667888889999999888 55


Q ss_pred             c-hhccCcc-cceEEccCC
Q 041406          270 P-EQLSELP-VLIFAAEKN  286 (286)
Q Consensus       270 ~-~~l~~l~-L~~l~l~~N  286 (286)
                      | .+|..++ |++|||.+|
T Consensus       408 ~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             chhhhccCcccceecCCCC
Confidence            5 4888888 999998876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-23  Score=181.35  Aligned_cols=223  Identities=20%  Similarity=0.170  Sum_probs=172.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+|.+|.|+..-.+++..++.+  +||+.|.+...--..|..-.++++|+|++|+|+......|..+.+|.+|.|+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            68888888888877766777777777  8999998865555666666789999999999998777888889999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      .|+++...+..|.++++|+.|++..|.+.-..     --.|..+++|+.|.+..|++...-...|..+.++++|++..|.
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive-----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeeh-----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence            99998444457777999999999999875321     2457778888888888888875545567777788888888888


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ++..--.++.++++|+.|++++|.|...-++.+...++|++||+++|+++.-.+++|..+. |+.|+|++|
T Consensus       281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence            7755555667788888888888888776677777778888888888888855555777777 777777766

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=4.3e-23  Score=179.95  Aligned_cols=216  Identities=31%  Similarity=0.479  Sum_probs=156.8

Q ss_pred             CEEEEEcCCCCcccccCc-cccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCC-----------------
Q 041406           59 RVIWLVLPTHSLKGPLSP-SLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSD-----------------  118 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~-~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------  118 (286)
                      +...|+|++|+|.. +|. -+.+++-|  ||+++|++. .+|..+..+..|+.|.|++|.+..                 
T Consensus       127 n~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            34445555555542 332 34445554  666666663 455556666666677776665421                 


Q ss_pred             --------CCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC
Q 041406          119 --------FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS  190 (286)
Q Consensus       119 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~  190 (286)
                              .+|..+..+.+|+.+|+|+|.+. .+|+.+.++++|+.|++++|.++.      +........+|++|+++.
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite------L~~~~~~W~~lEtLNlSr  277 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE------LNMTEGEWENLETLNLSR  277 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee------eeccHHHHhhhhhhcccc
Confidence                    24556666677777777777776 677777777888888888887753      334555667778888888


Q ss_pred             CcccccCChhccCCCCCCEEEcccCCCC-cccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccc
Q 041406          191 CSITGPLPEELSKLKFLSMLDLSENPLK-CSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL  269 (286)
Q Consensus       191 n~~~~~~p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  269 (286)
                      |+++ .+|..+.++++|+.|.+.+|+++ ..+|..++++.+|+.+..++|.+. ..|..++.+..|+.|.+++|++. .+
T Consensus       278 NQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TL  354 (1255)
T KOG0444|consen  278 NQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TL  354 (1255)
T ss_pred             chhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ec
Confidence            8877 67888888888888888888775 347888888888888888888887 88888999999999999999988 89


Q ss_pred             chhccCcc-cceEEccCC
Q 041406          270 PEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       270 ~~~l~~l~-L~~l~l~~N  286 (286)
                      |+.+.-++ |++||+..|
T Consensus       355 PeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  355 PEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             hhhhhhcCCcceeeccCC
Confidence            99999999 999999876

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=4e-23  Score=180.13  Aligned_cols=225  Identities=28%  Similarity=0.384  Sum_probs=144.6

Q ss_pred             cceEecCCCEEEEEcCCCCccc-ccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccC
Q 041406           51 VGVSCQRGRVIWLVLPTHSLKG-PLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL  127 (286)
Q Consensus        51 ~gv~c~~~~l~~l~l~~~~l~~-~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  127 (286)
                      .|.-.+-+++++++++.|++.. -+|+.+..+..|  +|+++|.+. ..|..+...+++-+|+|++|+|..+...-|.++
T Consensus        71 hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL  149 (1255)
T KOG0444|consen   71 HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL  149 (1255)
T ss_pred             hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence            3433334477888888888764 478888888888  899999884 678888888888889999998887444556788


Q ss_pred             CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc-ccCChhccCCCC
Q 041406          128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLKF  206 (286)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~p~~~~~~~~  206 (286)
                      +.|-+||+|+|++. .+|+.+..+.+|+.|++++|++.-..     -..+..+++|+.|.+++.+-+ ..+|.++..+.+
T Consensus       150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-----LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N  223 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ-----LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN  223 (1255)
T ss_pred             HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH-----HhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence            88888999999887 77877888888888888888764211     012223444555555554432 234555555555


Q ss_pred             CCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406          207 LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                      |..+|++.|.+. .+|+.+.++++|+.|+|++|+|+ .+....+.+.+|+.|+++.|+++ .+|.++++++ |+.|...+
T Consensus       224 L~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  224 LRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             hhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence            555555555555 45555555555555555555555 33333444555555555555555 5555555555 55554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=8.7e-22  Score=163.46  Aligned_cols=220  Identities=30%  Similarity=0.428  Sum_probs=139.5

Q ss_pred             EEEEEcCCCCcccccCccccccccc--cccCCCCCcc---------------------ccchhh-cCCCCCCEEEccCCC
Q 041406           60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFG---------------------QLSRQV-SNLKRLKQLSLGENQ  115 (286)
Q Consensus        60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~---------------------~~~~~l-~~l~~L~~L~l~~n~  115 (286)
                      ++.+|...|-+ +.+|+.++.+..+  ++++.|++..                     .+|++. ..++++..||+..|.
T Consensus       185 L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk  263 (565)
T KOG0472|consen  185 LKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK  263 (565)
T ss_pred             HHhcccchhhh-hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc
Confidence            34444444433 3667777777776  6666665521                     244443 477888888999988


Q ss_pred             CCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccc---cCCC---------------------
Q 041406          116 LSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGT---VRDK---------------------  171 (286)
Q Consensus       116 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~---------------------  171 (286)
                      +++ .|..++.+.+|.+||+++|.++ .+|..++++ +|+.|.+.+|++...   +...                     
T Consensus       264 lke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s  340 (565)
T KOG0472|consen  264 LKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS  340 (565)
T ss_pred             ccc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence            887 6788888889999999999998 778888888 889998888876411   0000                     


Q ss_pred             --------------------------------------------------------------------------------
Q 041406          172 --------------------------------------------------------------------------------  171 (286)
Q Consensus       172 --------------------------------------------------------------------------------  171 (286)
                                                                                                      
T Consensus       341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls  420 (565)
T KOG0472|consen  341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS  420 (565)
T ss_pred             cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence                                                                                            


Q ss_pred             -----CCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCC
Q 041406          172 -----LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP  246 (286)
Q Consensus       172 -----~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  246 (286)
                           .+|..++.+++|..|++++|-+. .+|..++.+..|+.++++.|.+. .+|..+..+..++.+..++|++....+
T Consensus       421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  421 NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             cCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence                 34445555566666666665554 55655666666666666666654 444444433334444444444442222


Q ss_pred             ccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          247 AELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       247 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +.+.++.+|..||+.+|.+. .+|+.++++. +++|.+++|
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence            33566667777777777776 6777777777 777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.80  E-value=2.9e-22  Score=166.32  Aligned_cols=219  Identities=31%  Similarity=0.462  Sum_probs=171.1

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      .++.+++.+|.+. .+|++++++..+  ++.++|++. .+|+.++.+.++++++.++|.+.. .++.++.+..+..++-.
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcc
Confidence            4788888888887 678889988888  889999884 678888899999999999998877 66677888888888888


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCC-----------------CCCCccccCCCCCCEEEccCCcccccCCh
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD-----------------KLLPPEIGELSLLEIFSSPSCSITGPLPE  199 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----------------~~~~~~~~~l~~L~~L~l~~n~~~~~~p~  199 (286)
                      +|+++ ..|..+.++.++..+++.+|.+....+.                 ..+|..++.+.+|+-|++.+|++. .+| 
T Consensus       146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-  222 (565)
T KOG0472|consen  146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-  222 (565)
T ss_pred             ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-
Confidence            88887 6666665555555555555554321110                 146777777888888888888877 556 


Q ss_pred             hccCCCCCCEEEcccCCCCcccchhhh-CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCccc
Q 041406          200 ELSKLKFLSMLDLSENPLKCSVPKAIG-ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPV  278 (286)
Q Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~L  278 (286)
                      .|..+..|.+++++.|.+. .+|.... +++++.+|+++.|++. +.|..++-+.+|++||+++|.++ ..|.+++++.|
T Consensus       223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL  299 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHL  299 (565)
T ss_pred             CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccccee
Confidence            5777777888888888776 5665544 8899999999999998 88988888999999999999999 78888998888


Q ss_pred             ceEEccCC
Q 041406          279 LIFAAEKN  286 (286)
Q Consensus       279 ~~l~l~~N  286 (286)
                      ++|.+.||
T Consensus       300 ~~L~leGN  307 (565)
T KOG0472|consen  300 KFLALEGN  307 (565)
T ss_pred             eehhhcCC
Confidence            88888776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=6.7e-22  Score=146.59  Aligned_cols=164  Identities=30%  Similarity=0.560  Sum_probs=106.1

Q ss_pred             CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCC
Q 041406          102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS  181 (286)
Q Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~  181 (286)
                      .+.+++.|.+++|.++. .|+.+..+.+|+.|.+++|++. .+|..++.+++|+.|+++-|++.      .+|.+|+.++
T Consensus        31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~------~lprgfgs~p  102 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN------ILPRGFGSFP  102 (264)
T ss_pred             chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh------cCccccCCCc
Confidence            34555566666666665 4555666666666666666666 66666666666666666666653      3466666666


Q ss_pred             CCCEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406          182 LLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML  260 (286)
Q Consensus       182 ~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  260 (286)
                      .|+.||+++|++. ..+|..|..+..|+.|.++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|++|.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI  180 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence            6777777666664 235665656666666777777765 56666677777777777777666 56666666777777777


Q ss_pred             ccCcCccccchhccCc
Q 041406          261 SCNALSGSLPEQLSEL  276 (286)
Q Consensus       261 ~~n~l~~~~~~~l~~l  276 (286)
                      ++|+++ .+|+.+.++
T Consensus       181 qgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  181 QGNRLT-VLPPELANL  195 (264)
T ss_pred             ccceee-ecChhhhhh
Confidence            777766 555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=3.6e-19  Score=152.02  Aligned_cols=227  Identities=26%  Similarity=0.300  Sum_probs=143.8

Q ss_pred             CEEEEEcCCCCccc------ccCccccccccc--cccCCCCCccccchhhcCCCC---CCEEEccCCCCCCC----Cccc
Q 041406           59 RVIWLVLPTHSLKG------PLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKR---LKQLSLGENQLSDF----VPSQ  123 (286)
Q Consensus        59 ~l~~l~l~~~~l~~------~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~---L~~L~l~~n~l~~~----~~~~  123 (286)
                      .++.++++++.+.+      .++..+..++++  +++++|.+.+..+..+..+.+   |++|++++|.+...    +...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            47777887776652      233445556666  777887776655555555444   88888888877632    2233


Q ss_pred             cccC-CCCCEEecCCCCCCCC----CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc--
Q 041406          124 LGVL-TQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP--  196 (286)
Q Consensus       124 ~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--  196 (286)
                      +..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+... ..++..+..+++|++|++++|.+.+.  
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI-RALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH-HHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            4455 7788888888877732    23345566778888888887764210 11234455567888888888877632  


Q ss_pred             --CChhccCCCCCCEEEcccCCCCcccchhhh-----CCCCCCEEEcccccccc----cCCccCCCCCCCCEEEcccCcC
Q 041406          197 --LPEELSKLKFLSMLDLSENPLKCSVPKAIG-----ELRKLGILNLGSTQLNG----SIPAELGKCENLMSVMLSCNAL  265 (286)
Q Consensus       197 --~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l  265 (286)
                        ++..+..+++|++|++++|.+++.....+.     ..++|++|++++|.+++    .+...+..+++|+++++++|.+
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence              334456677788888888887753333222     23678888888887762    2334455567888888888888


Q ss_pred             ccc----cchhccCc-c-cceEEccCC
Q 041406          266 SGS----LPEQLSEL-P-VLIFAAEKN  286 (286)
Q Consensus       266 ~~~----~~~~l~~l-~-L~~l~l~~N  286 (286)
                      +..    +.+.+... + ++++++.+|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         291 GEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             cHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            743    44455555 4 777777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=9.3e-17  Score=148.97  Aligned_cols=54  Identities=9%  Similarity=0.049  Sum_probs=37.5

Q ss_pred             cCCCChhhHHHHHHHHHhccCCCCCCC----CCCCCCCCCccc----------------eEecCCCEEEEEcCC
Q 041406           14 ADDEQNPDEQSLISFKNALESSHNLVS----WNKTNPHCYWVG----------------VSCQRGRVIWLVLPT   67 (286)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----w~~~~~~c~w~g----------------v~c~~~~l~~l~l~~   67 (286)
                      .+.++..|+..++++.+.+..|+...+    |++.++.|.-..                |.|....++.+.+.+
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g  130 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTE  130 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccc
Confidence            567788899999999999988776444    887766674322                556555555555554

>PLN03210 Resistant to P

Probab=99.73  E-value=1.2e-16  Score=156.82  Aligned_cols=219  Identities=20%  Similarity=0.255  Sum_probs=115.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++.++.+. .++..+..+++|  ++++++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            5666677666665 355556666666  66766654455553 5666777777777766555566666777777777777


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCC---------------CCCCccc------------------------
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD---------------KLLPPEI------------------------  177 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---------------~~~~~~~------------------------  177 (286)
                      +|.....+|..+ ++++|+.|++++|...+..|.               ..+|..+                        
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence            664444555443 455555555555432211110               0111110                        


Q ss_pred             ------cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC
Q 041406          178 ------GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK  251 (286)
Q Consensus       178 ------~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  251 (286)
                            ...++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---  844 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---  844 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---
Confidence                  112355666666665555566666666666666666654333444433 3444555555444322222221   


Q ss_pred             CCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406          252 CENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       252 ~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                      .++|++|++++|.++ .+|.++..++ |+.|++++
T Consensus       845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence            134555555555555 4555555555 55555543

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=6e-20  Score=136.25  Aligned_cols=157  Identities=31%  Similarity=0.521  Sum_probs=116.5

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      +.+++|.++ .+|..+..+.+|+.|++++|+++. .|..+..+++|+.|.++-|++. .+|..|+.++.|+.||++.|++
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence            556666654 344456677777777777777776 6667777777777777777776 7777777777788888777777


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ...    .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|++++|.++ .
T Consensus       115 ~e~----~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  115 NEN----SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ccc----cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence            542    36777777778888888888887 67777888888888888888776 67888888888888888888887 5


Q ss_pred             CCccCCC
Q 041406          245 IPAELGK  251 (286)
Q Consensus       245 ~~~~~~~  251 (286)
                      +|..++.
T Consensus       188 lppel~~  194 (264)
T KOG0617|consen  188 LPPELAN  194 (264)
T ss_pred             cChhhhh
Confidence            6655544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=7.2e-19  Score=150.13  Aligned_cols=227  Identities=27%  Similarity=0.292  Sum_probs=167.2

Q ss_pred             CEEEEEcCCCCcccc----cCccccccccc--cccCCCCCc------cccchhhcCCCCCCEEEccCCCCCCCCcccccc
Q 041406           59 RVIWLVLPTHSLKGP----LSPSLFFLSSL--SDLSQNPLF------GQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV  126 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~----~~~~~~~l~~l--L~l~~n~~~------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  126 (286)
                      +++.++++++.++..    ++..+...+.+  ++++++.+.      ..++..+..+++|++|++++|.+....+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            589999999998643    44455566656  788887775      234566778899999999999998666666666


Q ss_pred             CCC---CCEEecCCCCCCC----CCCcccCCC-CCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc--
Q 041406          127 LTQ---LETLSLGSNSFTG----EIPSELGKL-KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP--  196 (286)
Q Consensus       127 l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--  196 (286)
                      +..   |++|++++|.+.+    .+...+..+ ++|++|++++|.+++... ..++..+..+.+|++|++++|.+.+.  
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-EALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-HHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            655   9999999998873    223345566 899999999999874321 12345677778999999999998842  


Q ss_pred             --CChhccCCCCCCEEEcccCCCCccc----chhhhCCCCCCEEEcccccccccCCccCC-----CCCCCCEEEcccCcC
Q 041406          197 --LPEELSKLKFLSMLDLSENPLKCSV----PKAIGELRKLGILNLGSTQLNGSIPAELG-----KCENLMSVMLSCNAL  265 (286)
Q Consensus       197 --~p~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l  265 (286)
                        ++..+...++|++|++++|.+++..    +..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              3344556679999999999987443    34556788999999999988853222221     247899999999998


Q ss_pred             cc----ccchhccCcc-cceEEccCC
Q 041406          266 SG----SLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       266 ~~----~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +.    .+++.+..++ |+++++++|
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCC
Confidence            72    3445667778 999999887

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.72  E-value=1.7e-16  Score=155.67  Aligned_cols=224  Identities=23%  Similarity=0.241  Sum_probs=158.1

Q ss_pred             ccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccC
Q 041406           50 WVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL  127 (286)
Q Consensus        50 w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  127 (286)
                      |.|+.. -.+++.++++++...+.+| .+..+++|  |++++|.....+|..++.+++|+.|++++|.....+|..+ .+
T Consensus       627 ~~~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        627 WDGVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            555432 2378899998876555565 47777788  8888887777888888888889999888876444455544 56


Q ss_pred             CCCCEEecCCCCCCCCCC--------------------cccC------------------------------CCCCCCEE
Q 041406          128 TQLETLSLGSNSFTGEIP--------------------SELG------------------------------KLKNLKTL  157 (286)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~--------------------~~l~------------------------------~l~~L~~L  157 (286)
                      ++|+.|++++|.....+|                    ..+.                              ..++|+.|
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             CCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence            666666666654332222                    2110                              01234445


Q ss_pred             EccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406          158 DLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG  237 (286)
Q Consensus       158 ~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  237 (286)
                      ++++|...+     .+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|+++
T Consensus       784 ~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        784 FLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             eCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            555444322     367889999999999999987666778766 6889999999998655455543   4679999999


Q ss_pred             cccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          238 STQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       238 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +|.++ .+|..+..+++|+.|++++|.-...+|..+..++ |+.++++++
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            99998 7888889999999999998643336787778888 888887653

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.72  E-value=1.8e-19  Score=163.26  Aligned_cols=215  Identities=27%  Similarity=0.378  Sum_probs=153.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.++++.+++++ +|+.++.+.++  ++..+|.+ ..+|..+...++|+.|....|.+.. +|....++++|++|++.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence            56666666666653 34556666666  66666666 3455555556666666666666655 55566667777777777


Q ss_pred             CCCCCCCCCccc--------------------------CCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC
Q 041406          137 SNSFTGEIPSEL--------------------------GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS  190 (286)
Q Consensus       137 ~n~l~~~~~~~l--------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~  190 (286)
                      .|.+. .+|+.+                          ...+.|+.|.+.+|.+++..     -..+-++++|+.|++++
T Consensus       319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-----~p~l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-----FPVLVNFKHLKVLHLSY  392 (1081)
T ss_pred             hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-----hhhhccccceeeeeecc
Confidence            77765 444321                          01234566666777766433     24567788999999999


Q ss_pred             CcccccCC-hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccc
Q 041406          191 CSITGPLP-EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL  269 (286)
Q Consensus       191 n~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  269 (286)
                      |++. .+| ..+.++..|++|++++|.++ .+|..+..++.|++|...+|.+. .+| .+..++.|+.+|++.|+++...
T Consensus       393 NrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  393 NRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             cccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence            9998 455 45788999999999999998 88999999999999999999998 778 6888999999999999998543


Q ss_pred             chhccCcc-cceEEccCC
Q 041406          270 PEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       270 ~~~l~~l~-L~~l~l~~N  286 (286)
                      .+.-..-| |++||+++|
T Consensus       469 l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  469 LPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hhhhCCCcccceeeccCC
Confidence            33222237 999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.71  E-value=2.6e-19  Score=148.50  Aligned_cols=234  Identities=20%  Similarity=0.191  Sum_probs=146.5

Q ss_pred             CCccceEecCC----CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccC-CCCCCCC
Q 041406           48 CYWVGVSCQRG----RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGE-NQLSDFV  120 (286)
Q Consensus        48 c~w~gv~c~~~----~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~  120 (286)
                      |+-.|.+-.+.    ..+.|+|..|+|+...+.+|..++.|  +|++.|.|+..-|++|.++.++..|-+.+ |.|+...
T Consensus        53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             ccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            55455444433    67899999999997777789999999  99999999999999999998888877666 8888754


Q ss_pred             ccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCC---------
Q 041406          121 PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC---------  191 (286)
Q Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n---------  191 (286)
                      ...|.++..++.|.+.-|.+.....+.|..++++..|.+-+|.+.....     ..+..+..++.+.+..|         
T Consensus       133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-----~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-----GTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc-----ccccchhccchHhhhcCccccccccc
Confidence            4556666555555554444443333334444444444443333321000     01111111111111111         


Q ss_pred             ----------------------------------------------------cccccCC-hhccCCCCCCEEEcccCCCC
Q 041406          192 ----------------------------------------------------SITGPLP-EELSKLKFLSMLDLSENPLK  218 (286)
Q Consensus       192 ----------------------------------------------------~~~~~~p-~~~~~~~~L~~L~l~~n~l~  218 (286)
                                                                          ...+..| ..|+.+++|++|++++|.++
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                                                                1111222 24667777777888888777


Q ss_pred             cccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          219 CSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       219 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ..-+.+|.....++.|.|..|++...-...|.++..|+.|++.+|+|+...|-+|..+. |..+++-.|
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            66666777777777777777777644445567777777788888877766666777777 777766554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=7.9e-17  Score=149.44  Aligned_cols=203  Identities=25%  Similarity=0.400  Sum_probs=111.4

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      .++.|++++|.++ .+|..+.  .+|  |++++|.+. .+|..+.  ++|+.|++++|.+.. +|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECc
Confidence            5666777777666 3444333  245  666666664 3454333  356677777776664 444432  367777777


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCC----------------CCCccccCCCCCCEEEccCCcccccCChh
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK----------------LLPPEIGELSLLEIFSSPSCSITGPLPEE  200 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----------------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~  200 (286)
                      +|+++ .+|..+.  .+|+.|++++|.++.. |..                .+|..+  .++|+.|++++|.+++ +|..
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~  343 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPAS  343 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccccC-cccchhhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChh
Confidence            77776 4555443  3677777777766531 100                011111  1345555666655552 4443


Q ss_pred             ccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhc----cCc
Q 041406          201 LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL----SEL  276 (286)
Q Consensus       201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~l  276 (286)
                      +.  ++|+.|++++|.++ .+|..+  .++|++|++++|.++ .+|..+.  ..|+.|++++|++. .+|..+    ..+
T Consensus       344 l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~  414 (754)
T PRK15370        344 LP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG  414 (754)
T ss_pred             hc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence            32  45666666666665 445443  246666666666666 4444332  24666667777666 444433    334


Q ss_pred             c-cceEEccCC
Q 041406          277 P-VLIFAAEKN  286 (286)
Q Consensus       277 ~-L~~l~l~~N  286 (286)
                      + +..+++.+|
T Consensus       415 ~~l~~L~L~~N  425 (754)
T PRK15370        415 PQPTRIIVEYN  425 (754)
T ss_pred             CCccEEEeeCC
Confidence            5 677777765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=5.4e-16  Score=143.40  Aligned_cols=72  Identities=32%  Similarity=0.334  Sum_probs=40.9

Q ss_pred             CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEcc
Q 041406          206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAE  284 (286)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~  284 (286)
                      +|+.|++++|.++ .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|+.+..++ ++.|+++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            4555555555554 23322   234556666666655 34432   234566666666666 5676677777 7777777


Q ss_pred             CC
Q 041406          285 KN  286 (286)
Q Consensus       285 ~N  286 (286)
                      +|
T Consensus       454 ~N  455 (788)
T PRK15387        454 GN  455 (788)
T ss_pred             CC
Confidence            66

>PLN03150 hypothetical protein; Provisional

Probab=99.66  E-value=9e-16  Score=141.38  Aligned_cols=148  Identities=26%  Similarity=0.442  Sum_probs=116.5

Q ss_pred             cCCCChhhHHHHHHHHHhccCCCCCCCCCCCCCCC-----CccceEecCC------CEEEEEcCCCCcccccCccccccc
Q 041406           14 ADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHC-----YWVGVSCQRG------RVIWLVLPTHSLKGPLSPSLFFLS   82 (286)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~------~l~~l~l~~~~l~~~~~~~~~~l~   82 (286)
                      ...+...|..||+.+|+++..+. ..+|+.  ++|     .|.|+.|...      .++.|+|+++++.|.+|..+..++
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~-~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPL-RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcc-cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            55667789999999999986543 248965  345     7999999632      488999999999988888888888


Q ss_pred             cc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCC-CCCCEEEc
Q 041406           83 SL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKL-KNLKTLDL  159 (286)
Q Consensus        83 ~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l  159 (286)
                      +|  |++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|++|++++|.+++.+|..+... .++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            88  8888888888888888888888888888888888788888888888888888888888888776553 45667777


Q ss_pred             cCCcc
Q 041406          160 SGNEF  164 (286)
Q Consensus       160 ~~n~~  164 (286)
                      .+|..
T Consensus       523 ~~N~~  527 (623)
T PLN03150        523 TDNAG  527 (623)
T ss_pred             cCCcc
Confidence            76654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=5.4e-15  Score=136.86  Aligned_cols=84  Identities=29%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML  260 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  260 (286)
                      .+|+.|++++|.++ .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|++
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            46889999999988 45543   357999999999998 56754   346889999999998 78999999999999999


Q ss_pred             ccCcCccccchhc
Q 041406          261 SCNALSGSLPEQL  273 (286)
Q Consensus       261 ~~n~l~~~~~~~l  273 (286)
                      ++|++++.++..+
T Consensus       453 s~N~Ls~~~~~~L  465 (788)
T PRK15387        453 EGNPLSERTLQAL  465 (788)
T ss_pred             CCCCCCchHHHHH
Confidence            9999999888766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=8.2e-17  Score=133.79  Aligned_cols=207  Identities=22%  Similarity=0.188  Sum_probs=172.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc---cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL---SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l---L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  135 (286)
                      ++++|||+.|+|+..-|.+|..+..+   +..++|+|+..-...|+++..++.|.+.-|.+.......|..++++..|.+
T Consensus        92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl  171 (498)
T KOG4237|consen   92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL  171 (498)
T ss_pred             hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence            89999999999999999999999888   566679998777788899999999999888888877788899999999999


Q ss_pred             CCCCCCCCCCc-ccCCCCCCCEEEccCCccccc--cCCC-----------------------------------------
Q 041406          136 GSNSFTGEIPS-ELGKLKNLKTLDLSGNEFNGT--VRDK-----------------------------------------  171 (286)
Q Consensus       136 ~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~--~~~~-----------------------------------------  171 (286)
                      ..|.+. .++. .+..+..++.+++..|.+-..  .+..                                         
T Consensus       172 yDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es  250 (498)
T KOG4237|consen  172 YDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES  250 (498)
T ss_pred             cchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence            998887 4444 677777777777776662110  0000                                         


Q ss_pred             -------------CCC-ccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406          172 -------------LLP-PEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG  237 (286)
Q Consensus       172 -------------~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  237 (286)
                                   .-| ..|.++++|+.+++++|.+++.-+..|.....++.|.+..|++...-...|.++..|++|+|+
T Consensus       251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~  330 (498)
T KOG4237|consen  251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY  330 (498)
T ss_pred             HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence                         111 236788999999999999998888899999999999999999985555678899999999999


Q ss_pred             cccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          238 STQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       238 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +|+|+...|..|....+|.+|++-.|.+.
T Consensus       331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  331 DNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CCeeEEEecccccccceeeeeehccCccc
Confidence            99999888989999999999999988875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.53  E-value=2.3e-16  Score=143.44  Aligned_cols=220  Identities=26%  Similarity=0.342  Sum_probs=159.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccccccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN  138 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  138 (286)
                      +++.|..+.|.+....+.-....-..++++.|.+. .+|+.++.+.+|+.++..+|.+.. +|..+...++|+.+...+|
T Consensus       220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             chheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhh
Confidence            45555555565552222111111111788888875 456888889999999999998865 7777888889999999999


Q ss_pred             CCCCCCCcccCCCCCCCEEEccCCccccccCCC-------------------CCCcccc--CCCCCCEEEccCCcccccC
Q 041406          139 SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK-------------------LLPPEIG--ELSLLEIFSSPSCSITGPL  197 (286)
Q Consensus       139 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-------------------~~~~~~~--~l~~L~~L~l~~n~~~~~~  197 (286)
                      .+. .+|+.+..+.+|+.|++..|.+....+..                   ..| ..+  .++.|+.|++.+|.++...
T Consensus       298 el~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  298 ELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccc
Confidence            888 78888888999999999999875321100                   111 111  1345777888888887665


Q ss_pred             ChhccCCCCCCEEEcccCCCCcccc-hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCc
Q 041406          198 PEELSKLKFLSMLDLSENPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSEL  276 (286)
Q Consensus       198 p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  276 (286)
                      -+.+...++|+.|+++.|.+. .+| ..+.++..|++|+|++|+++ .+|..+..++.|+.|...+|.+. .+| .+..+
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l  451 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL  451 (1081)
T ss_pred             hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence            556777788888888888887 444 45678888888888888888 77787888888888888888888 777 67888


Q ss_pred             c-cceEEccCC
Q 041406          277 P-VLIFAAEKN  286 (286)
Q Consensus       277 ~-L~~l~l~~N  286 (286)
                      + |+.+|++.|
T Consensus       452 ~qL~~lDlS~N  462 (1081)
T KOG0618|consen  452 PQLKVLDLSCN  462 (1081)
T ss_pred             CcceEEecccc
Confidence            9 999999887

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=1.6e-14  Score=125.45  Aligned_cols=190  Identities=31%  Similarity=0.431  Sum_probs=133.3

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      ..+..|++.|.+. .+|..++.+..+  +.++.|.+ ..+|..+..+..|++++++.|++.. .|..++.+ -|+.|.++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~l-pLkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSH-LPDGLCDL-PLKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhc-CChhhhcC-cceeEEEe
Confidence            3456667777766 567777766666  56666665 3567777888888888888888776 56556555 37777888


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|+++ .+|..++...+|..|+.+.|.+.      .+|..++.+.+|+.|.+..|++. .+|+.+..++ |..||++.|+
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~------slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk  222 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK  222 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh------hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence            88877 77777777778888888888774      35677777788888888888777 5666666554 7778888888


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCC---CCCCCCEEEcccC
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELG---KCENLMSVMLSCN  263 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~l~~n  263 (286)
                      +. .+|-.|.+++.|++|-|.+|.+. ..|..++   ..--.++|+.+-+
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            87 77778888888888888888776 4444332   2233455666655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=1.6e-14  Score=125.33  Aligned_cols=174  Identities=30%  Similarity=0.464  Sum_probs=152.8

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      .+++.|++ ..+|..+..+-.|+.+.+..|.+.. +|..++.+..|.+++++.|+++ .+|..+..++ |+.|-+++|++
T Consensus        80 aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRF-SELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhcccccc-ccCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence            78889988 4778888888889999999999887 7889999999999999999998 8898888877 89999999998


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      +      .+|+.++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|+++ .
T Consensus       156 ~------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~  225 (722)
T KOG0532|consen  156 T------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y  225 (722)
T ss_pred             c------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence            5      36788888899999999999998 78888999999999999999998 678887754 4899999999999 8


Q ss_pred             CCccCCCCCCCCEEEcccCcCccccchhc
Q 041406          245 IPAELGKCENLMSVMLSCNALSGSLPEQL  273 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  273 (286)
                      +|-.|.+|.+|++|-|.+|.+. .-|..+
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            9999999999999999999998 444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.37  E-value=5e-14  Score=115.66  Aligned_cols=227  Identities=21%  Similarity=0.241  Sum_probs=160.1

Q ss_pred             CEEEEEcCCCCcccc----cCccccccccc--cccCC---CCCccccc-------hhhcCCCCCCEEEccCCCCCCCCcc
Q 041406           59 RVIWLVLPTHSLKGP----LSPSLFFLSSL--SDLSQ---NPLFGQLS-------RQVSNLKRLKQLSLGENQLSDFVPS  122 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~----~~~~~~~l~~l--L~l~~---n~~~~~~~-------~~l~~l~~L~~L~l~~n~l~~~~~~  122 (286)
                      .++.|+|++|.+...    +...+.+.+.|  .+++.   -+....+|       +++..+++|++++||.|.+....++
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            689999999988743    33345555555  33332   12222333       4556788999999999999876555


Q ss_pred             cc----ccCCCCCEEecCCCCCCCC-------------CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406          123 QL----GVLTQLETLSLGSNSFTGE-------------IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI  185 (286)
Q Consensus       123 ~~----~~l~~L~~L~l~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~  185 (286)
                      .|    ..+..|++|.+.+|.+...             .......-++|+++..++|++. ..+...+...++..+.|+.
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhccccce
Confidence            43    4678999999999987621             1122455688999999999874 3333445667788889999


Q ss_pred             EEccCCccccc----CChhccCCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEcccccccccCCccC-----CCC
Q 041406          186 FSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGSIPAEL-----GKC  252 (286)
Q Consensus       186 L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~  252 (286)
                      +.+++|.|.-.    +...+..+++|+.||+..|-++..    +...+..+++|+.|++++|.+.......+     ...
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence            99999988622    234577889999999999988743    33455677889999999998875443322     336


Q ss_pred             CCCCEEEcccCcCccc----cchhccCcc-cceEEccCC
Q 041406          253 ENLMSVMLSCNALSGS----LPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       253 ~~L~~L~l~~n~l~~~----~~~~l~~l~-L~~l~l~~N  286 (286)
                      |.|+.|.+.+|.++..    +..++...| |.+|++++|
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            8899999999988742    334566778 999998887

>PLN03150 hypothetical protein; Provisional

Probab=99.34  E-value=2.8e-12  Score=118.44  Aligned_cols=104  Identities=30%  Similarity=0.529  Sum_probs=59.0

Q ss_pred             CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 041406          183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC  262 (286)
Q Consensus       183 L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  262 (286)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44555555555555555555555566666666655555555555556666666666655555555555555666666666


Q ss_pred             CcCccccchhccCcc--cceEEccCC
Q 041406          263 NALSGSLPEQLSELP--VLIFAAEKN  286 (286)
Q Consensus       263 n~l~~~~~~~l~~l~--L~~l~l~~N  286 (286)
                      |+++|.+|..+..+.  +..+++.+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCC
Confidence            665555555554432  444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.33  E-value=1.9e-12  Score=113.90  Aligned_cols=173  Identities=42%  Similarity=0.615  Sum_probs=100.5

Q ss_pred             cccCCCCCccccchhhcCCC-CCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406           85 SDLSQNPLFGQLSRQVSNLK-RLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE  163 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  163 (286)
                      +++.+|.++. ++....... +|+.|++++|.+.. +|..+..++.|+.|++++|++. .+|......+.|+.|++++|.
T Consensus       121 L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~  197 (394)
T COG4886         121 LDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK  197 (394)
T ss_pred             EecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc
Confidence            5566665543 333334442 66666666666655 3344566666666666666666 555544466666666666666


Q ss_pred             cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406          164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG  243 (286)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  243 (286)
                      +..      +|........|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+..++.++++++|++++|.++ 
T Consensus       198 i~~------l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         198 ISD------LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             ccc------CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-
Confidence            642      3344444455666666666433 34445556666666666666654 33455566666777777777666 


Q ss_pred             cCCccCCCCCCCCEEEcccCcCccccc
Q 041406          244 SIPAELGKCENLMSVMLSCNALSGSLP  270 (286)
Q Consensus       244 ~~~~~~~~~~~L~~L~l~~n~l~~~~~  270 (286)
                      .++. ++...+++.|++++|.+....+
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccc-ccccCccCEEeccCccccccch
Confidence            3333 5666667777777766664433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=3.7e-12  Score=112.09  Aligned_cols=174  Identities=33%  Similarity=0.523  Sum_probs=132.4

Q ss_pred             hcCCCCCCEEEccCCCCCCCCccccccCC-CCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCcccc
Q 041406          100 VSNLKRLKQLSLGENQLSDFVPSQLGVLT-QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIG  178 (286)
Q Consensus       100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  178 (286)
                      +..++.++.+++.+|.++. ++....... +|+.|++++|.+. .+|..+..++.|+.|++++|++..      +|....
T Consensus       112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~------l~~~~~  183 (394)
T COG4886         112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD------LPKLLS  183 (394)
T ss_pred             hhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh------hhhhhh
Confidence            4555778888888888887 555566664 8888899888887 666667888888889998888853      345555


Q ss_pred             CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEE
Q 041406          179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSV  258 (286)
Q Consensus       179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  258 (286)
                      ..+.|+.|++++|++. .+|........|+++.+++|... ..+..+++++++..+.+.+|++. .++..+..++.++.|
T Consensus       184 ~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L  260 (394)
T COG4886         184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL  260 (394)
T ss_pred             hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccccee
Confidence            7788888899888888 56665555666888888888543 46677778888888888888876 446667778888899


Q ss_pred             EcccCcCccccchhccCcc-cceEEccCC
Q 041406          259 MLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       259 ~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ++++|.++ .++. +..+. ++.|++++|
T Consensus       261 ~~s~n~i~-~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         261 DLSNNQIS-SISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             cccccccc-cccc-ccccCccCEEeccCc
Confidence            99998888 5555 67777 888888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=3.7e-12  Score=103.15  Aligned_cols=214  Identities=21%  Similarity=0.197  Sum_probs=101.0

Q ss_pred             CEEEEEcCCCC--------cccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCC
Q 041406           59 RVIWLVLPTHS--------LKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT  128 (286)
Q Consensus        59 ~l~~l~l~~~~--------l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  128 (286)
                      ++..|..++..        +...+|..+..+.++  +.++.+.-.. +.+....-|.|+.+...+..+...  +.+-...
T Consensus       183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~--~~l~pe~  259 (490)
T KOG1259|consen  183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDV--PSLLPET  259 (490)
T ss_pred             heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccc--ccccchh
Confidence            57777766531        223345555556666  6666654321 111112225677776655444321  0111111


Q ss_pred             CCCEEecCCC-CCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC
Q 041406          129 QLETLSLGSN-SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL  207 (286)
Q Consensus       129 ~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L  207 (286)
                      .+....-+.- -.+|..-.....+..|+++|+++|.|+.      +.++..-.++++.|++++|.+...  ..+..+++|
T Consensus       260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~------iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L  331 (490)
T KOG1259|consen  260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ------IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQL  331 (490)
T ss_pred             hhcCccCCCCCccCCceEEecchHhhhhhccccccchhh------hhhhhhhccceeEEeccccceeee--hhhhhcccc
Confidence            1111111100 0111222223334556666666666542      234555556666666666666521  225556666


Q ss_pred             CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc-cchhccCcc-cceEEccC
Q 041406          208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS-LPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~-L~~l~l~~  285 (286)
                      +.||+++|.++ .+..+-.++-++++|.|++|.+.. + +.++.+-+|..||+++|+|..- -...++++| |+.+.+.+
T Consensus       332 ~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  332 QLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             eEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            66666666665 333333455556666666665542 1 2245555666666666665521 112456666 66555554


Q ss_pred             C
Q 041406          286 N  286 (286)
Q Consensus       286 N  286 (286)
                      |
T Consensus       409 N  409 (490)
T KOG1259|consen  409 N  409 (490)
T ss_pred             C
Confidence            4

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=2.7e-11  Score=93.05  Aligned_cols=127  Identities=25%  Similarity=0.294  Sum_probs=41.4

Q ss_pred             cccCCCCCEEecCCCCCCCCCCcccC-CCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc-
Q 041406          124 LGVLTQLETLSLGSNSFTGEIPSELG-KLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL-  201 (286)
Q Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-  201 (286)
                      +.+..++++|++.+|.|+ .+. .++ .+.+|+.|++++|.+...       +.+..++.|++|++++|.++. +.+.+ 
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-------~~l~~L~~L~~L~L~~N~I~~-i~~~l~   84 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-------EGLPGLPRLKTLDLSNNRISS-ISEGLD   84 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---------TT----TT--EEE--SS---S--CHHHH
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-------cCccChhhhhhcccCCCCCCc-cccchH
Confidence            344556788888888777 332 344 467788888888877531       345567777777777777773 33333 


Q ss_pred             cCCCCCCEEEcccCCCCcc-cchhhhCCCCCCEEEcccccccccCCc----cCCCCCCCCEEEcc
Q 041406          202 SKLKFLSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLNGSIPA----ELGKCENLMSVMLS  261 (286)
Q Consensus       202 ~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~  261 (286)
                      ..+++|++|++++|.+... .-..++.+++|+.|++.+|.++.. +.    .+..+|+|+.||-.
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            3467777777777777532 124555677777777777777632 32    23446777776643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2.4e-11  Score=93.31  Aligned_cols=127  Identities=33%  Similarity=0.399  Sum_probs=48.3

Q ss_pred             cCCCCCCEEEccCCCCCCCCccccc-cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccc-c
Q 041406          101 SNLKRLKQLSLGENQLSDFVPSQLG-VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-G  178 (286)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-~  178 (286)
                      .+..++++|+|++|.|+..  +.++ .+.+|+.|++++|.++ .+. .+..++.|+.|++++|.++.      +.+.+ .
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~------i~~~l~~   85 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS------ISEGLDK   85 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-------CHHHHH
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc------cccchHH
Confidence            4445688899999888763  2354 4778899999999888 443 47778889999999998863      23334 3


Q ss_pred             CCCCCCEEEccCCccccc-CChhccCCCCCCEEEcccCCCCccc---chhhhCCCCCCEEEcc
Q 041406          179 ELSLLEIFSSPSCSITGP-LPEELSKLKFLSMLDLSENPLKCSV---PKAIGELRKLGILNLG  237 (286)
Q Consensus       179 ~l~~L~~L~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~  237 (286)
                      .+++|++|++++|++... --..+..+++|+.|++.+|+++..-   ...+..+|+|+.||-.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            578899999999988632 1245677888999999998887331   1244578888888743

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.7e-11  Score=103.65  Aligned_cols=202  Identities=22%  Similarity=0.245  Sum_probs=86.7

Q ss_pred             CEEEEEcCCCCcccccC-ccccccccc--cccCCCCCccc--cchhhcCCCCCCEEEccCCCCCCCCcccc-ccCCCCCE
Q 041406           59 RVIWLVLPTHSLKGPLS-PSLFFLSSL--SDLSQNPLFGQ--LSRQVSNLKRLKQLSLGENQLSDFVPSQL-GVLTQLET  132 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~-~~~~~l~~l--L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~  132 (286)
                      .++.+.|.++.+..... .....++++  ||++.|-+..-  +.....++|+|+.|+++.|.+........ ..+..|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            45555555554431111 133344444  55555544322  11223455555555555555443222111 13445555


Q ss_pred             EecCCCCCCCC-CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC--hhccCCCCCCE
Q 041406          133 LSLGSNSFTGE-IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP--EELSKLKFLSM  209 (286)
Q Consensus       133 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~~~~L~~  209 (286)
                      |.++.|.++.. +...+..+|+|..|++..|......     ......+..|++|+|++|++.. ++  ...+.++.|+.
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-----~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-----ATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-----cchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            55555555421 1112234555555555555311100     1122234455555555555542 22  22344555555


Q ss_pred             EEcccCCCCcc-cchh-----hhCCCCCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCc
Q 041406          210 LDLSENPLKCS-VPKA-----IGELRKLGILNLGSTQLNG-SIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       210 L~l~~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      |+++.+.+... .|+.     ....++|++|++..|++.. ..-..+..+++|+.|.+..|.++
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            55555555421 1111     1234555556555555531 11122334455555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.8e-11  Score=102.46  Aligned_cols=163  Identities=26%  Similarity=0.244  Sum_probs=91.1

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCc--cccccCCCCCEEecCCCCCCCCCCcc-cCCCCCCCEEEccCCccccccCCCCCCc
Q 041406           99 QVSNLKRLKQLSLGENQLSDFVP--SQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPP  175 (286)
Q Consensus        99 ~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~  175 (286)
                      ....|++++.|+++.|-+....+  .....+++|+.|.++.|++....... -..+++|+.|.+++|.++...    +-.
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~----V~~  216 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD----VQW  216 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHH----HHH
Confidence            34556666666666665544222  23345666666666666655222111 123566666677666665311    123


Q ss_pred             cccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc--hhhhCCCCCCEEEccccccccc-CCcc----
Q 041406          176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP--KAIGELRKLGILNLGSTQLNGS-IPAE----  248 (286)
Q Consensus       176 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~-~~~~----  248 (286)
                      ....+++|+.|++..|..-........-++.|+.|||++|.+- ..+  ...+.++.|+.|+++.+.+... +|+.    
T Consensus       217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchh
Confidence            3445667777777777422222223334556777777777765 222  3445677777777777766642 2222    


Q ss_pred             -CCCCCCCCEEEcccCcCc
Q 041406          249 -LGKCENLMSVMLSCNALS  266 (286)
Q Consensus       249 -~~~~~~L~~L~l~~n~l~  266 (286)
                       ...+++|++|++..|++.
T Consensus       296 kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhcccccceeeecccCccc
Confidence             234677788888888775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=2.7e-11  Score=99.84  Aligned_cols=207  Identities=20%  Similarity=0.211  Sum_probs=147.2

Q ss_pred             CEEEEEcCCC---CcccccCcc-------ccccccc--cccCCCCCccccchh----hcCCCCCCEEEccCCCCCCCCcc
Q 041406           59 RVIWLVLPTH---SLKGPLSPS-------LFFLSSL--SDLSQNPLFGQLSRQ----VSNLKRLKQLSLGENQLSDFVPS  122 (286)
Q Consensus        59 ~l~~l~l~~~---~l~~~~~~~-------~~~l~~l--L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~  122 (286)
                      +++..+++..   ++...+|++       +...++|  ++||.|-+...-+..    +.++..|++|.+.+|.+...-..
T Consensus        59 ~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~  138 (382)
T KOG1909|consen   59 ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG  138 (382)
T ss_pred             cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH
Confidence            5666666653   233344443       3344566  889999886654433    46788999999999988643222


Q ss_pred             c-------------cccCCCCCEEecCCCCCCCC----CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406          123 Q-------------LGVLTQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI  185 (286)
Q Consensus       123 ~-------------~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~  185 (286)
                      .             ...-+.|+++....|++...    +...+...+.|+.+.+..|.|..... ..+..++..+++|+.
T Consensus       139 ~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~Lev  217 (382)
T KOG1909|consen  139 RLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEV  217 (382)
T ss_pred             HHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCccee
Confidence            2             23357899999999988632    22346677899999999998853221 234567788999999


Q ss_pred             EEccCCccccc----CChhccCCCCCCEEEcccCCCCcccchhh----h-CCCCCCEEEccccccccc----CCccCCCC
Q 041406          186 FSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCSVPKAI----G-ELRKLGILNLGSTQLNGS----IPAELGKC  252 (286)
Q Consensus       186 L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~L~~n~l~~~----~~~~~~~~  252 (286)
                      ||+.+|.++..    +...+..+++|+.++++.|.+.......+    . ..++|+.|.+.+|.|+..    +...+...
T Consensus       218 Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek  297 (382)
T KOG1909|consen  218 LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK  297 (382)
T ss_pred             eecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence            99999998732    44667888999999999999875544333    2 468999999999998842    22345568


Q ss_pred             CCCCEEEcccCcCc
Q 041406          253 ENLMSVMLSCNALS  266 (286)
Q Consensus       253 ~~L~~L~l~~n~l~  266 (286)
                      |.|..|++++|++.
T Consensus       298 ~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  298 PDLEKLNLNGNRLG  311 (382)
T ss_pred             hhhHHhcCCccccc
Confidence            99999999999993

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=4.5e-11  Score=96.91  Aligned_cols=132  Identities=27%  Similarity=0.311  Sum_probs=88.8

Q ss_pred             hcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccC
Q 041406          100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE  179 (286)
Q Consensus       100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  179 (286)
                      ..-.+.|+.+++++|.|+. +.++..-.++++.|++++|.+. .+.. +..+++|+.||+++|.++..      ..+-.+
T Consensus       280 ~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~------~Gwh~K  350 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAEC------VGWHLK  350 (490)
T ss_pred             cchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhh------hhhHhh
Confidence            3345667778888887776 4555666778888888888876 3333 67778888888888876532      123335


Q ss_pred             CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcc-cchhhhCCCCCCEEEccccccc
Q 041406          180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      +.+++.|.+++|.+..  -..+.++-+|..||+++|++... -...++++|.|+++.|.+|.+.
T Consensus       351 LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            6677788888877652  23456667778888888877521 1245677788888888888776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1.3e-09  Score=69.06  Aligned_cols=59  Identities=32%  Similarity=0.379  Sum_probs=26.4

Q ss_pred             CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406          206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA  264 (286)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  264 (286)
                      +|++|++++|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444442222344444444444444444443333444444444555444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=2.5e-09  Score=67.76  Aligned_cols=61  Identities=33%  Similarity=0.423  Sum_probs=41.5

Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccc
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQL  241 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  241 (286)
                      ++|++|++++|++....+..|..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566677777766655455667777777777777777655556677777777777777754

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=3.9e-10  Score=99.72  Aligned_cols=144  Identities=30%  Similarity=0.372  Sum_probs=87.5

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      +.++.|.+.. +-..+..+.+|+.+++..|.+... ...+..+++|++|++++|.|+..  ..+..++.|+.|++.+|.+
T Consensus        77 l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen   77 LNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLI  152 (414)
T ss_pred             hccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcc
Confidence            4556666543 223356677788888888877763 32256677888888888877732  2355666678888888877


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCC-hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP-EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      ...       ..+..+..|+.+++++|.++..-+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.++
T Consensus       153 ~~~-------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  153 SDI-------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             hhc-------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence            532       344557777888888887774333 1 4566677777777777651  122223333333344444444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.76  E-value=1.1e-09  Score=87.70  Aligned_cols=208  Identities=18%  Similarity=0.167  Sum_probs=132.8

Q ss_pred             CEEEEEcCCCCcccccCc----cccccccc--cccCCC---CCccc-------cchhhcCCCCCCEEEccCCCCCCCCcc
Q 041406           59 RVIWLVLPTHSLKGPLSP----SLFFLSSL--SDLSQN---PLFGQ-------LSRQVSNLKRLKQLSLGENQLSDFVPS  122 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~----~~~~l~~l--L~l~~n---~~~~~-------~~~~l~~l~~L~~L~l~~n~l~~~~~~  122 (286)
                      .++.++|+||.+......    .+.+-.+|  .+++.-   .....       +..++-+||+|+.+++|.|.+....|+
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            688999999998754333    44455555  444432   11222       335567899999999999999877765


Q ss_pred             cc----ccCCCCCEEecCCCCCCCCCCc--------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCC
Q 041406          123 QL----GVLTQLETLSLGSNSFTGEIPS--------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE  184 (286)
Q Consensus       123 ~~----~~l~~L~~L~l~~n~l~~~~~~--------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~  184 (286)
                      .+    ..-+.|++|.+++|.+. .+..              ....-+.|+.+.+..|++.. .+.......+.....|+
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk  188 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLK  188 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCce
Confidence            44    45688999999999765 2221              12345789999999988742 11111223344446788


Q ss_pred             EEEccCCcccccCC-----hhccCCCCCCEEEcccCCCCccc----chhhhCCCCCCEEEcccccccccCCccC------
Q 041406          185 IFSSPSCSITGPLP-----EELSKLKFLSMLDLSENPLKCSV----PKAIGELRKLGILNLGSTQLNGSIPAEL------  249 (286)
Q Consensus       185 ~L~l~~n~~~~~~p-----~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~------  249 (286)
                      ++.+.+|.|.-...     ..+..+++|+.||+..|.++...    ...+..++.|+.|.+..|.++......+      
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            88888888762211     12345678888888888877432    2334456778888888887764433221      


Q ss_pred             CCCCCCCEEEcccCcCccc
Q 041406          250 GKCENLMSVMLSCNALSGS  268 (286)
Q Consensus       250 ~~~~~L~~L~l~~n~l~~~  268 (286)
                      ...|+|..|-..+|.+.+.
T Consensus       269 ~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         269 KFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             hcCCCccccccchhhhcCc
Confidence            2257777777777766543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.69  E-value=2.6e-08  Score=58.00  Aligned_cols=38  Identities=42%  Similarity=0.947  Sum_probs=28.7

Q ss_pred             hhhHHHHHHHHHhccCCC-C-CCCCCCC--CCCCCccceEec
Q 041406           19 NPDEQSLISFKNALESSH-N-LVSWNKT--NPHCYWVGVSCQ   56 (286)
Q Consensus        19 ~~~~~~l~~~~~~~~~~~-~-~~~w~~~--~~~c~w~gv~c~   56 (286)
                      ++|++||++||+++..++ . +.+|+.+  .++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            579999999999999644 4 9999987  456999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.7e-10  Score=93.40  Aligned_cols=209  Identities=22%  Similarity=0.174  Sum_probs=131.9

Q ss_pred             CccceEecCCCEEEEEcCCCCcccc--------------cC----------ccccccc-cc--cccCCCCCccc-cchhh
Q 041406           49 YWVGVSCQRGRVIWLVLPTHSLKGP--------------LS----------PSLFFLS-SL--SDLSQNPLFGQ-LSRQV  100 (286)
Q Consensus        49 ~w~gv~c~~~~l~~l~l~~~~l~~~--------------~~----------~~~~~l~-~l--L~l~~n~~~~~-~~~~l  100 (286)
                      +|++..-+...-+.+|+.+.+++..              ++          +.+.-++ .+  +|++...++.. +-..+
T Consensus       127 Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iL  206 (419)
T KOG2120|consen  127 RFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGIL  206 (419)
T ss_pred             HHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHH
Confidence            3666666655778888888776521              11          1111111 22  67777766543 23445


Q ss_pred             cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCC-CCCCCC--cccCCCCCCCEEEccCCccccccCCCCCCccc
Q 041406          101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNS-FTGEIP--SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI  177 (286)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  177 (286)
                      ..|++|+.|.+.++++...+...+..-..|+.|+++.+. ++ ...  -.+.++..|..|+++.|.+....    +...+
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~----Vtv~V  281 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEK----VTVAV  281 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchh----hhHHH
Confidence            677888888888888877666777777888888888764 32 111  13466788888888888764322    12223


Q ss_pred             cCC-CCCCEEEccCCccc---ccCChhccCCCCCCEEEcccCC-CCcccchhhhCCCCCCEEEcccccccccCCc---cC
Q 041406          178 GEL-SLLEIFSSPSCSIT---GPLPEELSKLKFLSMLDLSENP-LKCSVPKAIGELRKLGILNLGSTQLNGSIPA---EL  249 (286)
Q Consensus       178 ~~l-~~L~~L~l~~n~~~---~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~  249 (286)
                      .+. .+|+.|+++++.-.   ..+.--..++++|.+||++.|. ++......|.+++.|++|+++.|..  .+|.   .+
T Consensus       282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l  359 (419)
T KOG2120|consen  282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLEL  359 (419)
T ss_pred             hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeee
Confidence            332 46778888776432   1122234578889999998764 4444556777889999999988863  3343   35


Q ss_pred             CCCCCCCEEEcccCc
Q 041406          250 GKCENLMSVMLSCNA  264 (286)
Q Consensus       250 ~~~~~L~~L~l~~n~  264 (286)
                      ...|+|.+||+.++-
T Consensus       360 ~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccCcceEEEEecccc
Confidence            667889999888763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=3.3e-08  Score=94.03  Aligned_cols=95  Identities=28%  Similarity=0.389  Sum_probs=69.7

Q ss_pred             CccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCC
Q 041406           92 LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK  171 (286)
Q Consensus        92 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  171 (286)
                      +.....+.|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+. .+|..+.++.+|.+|++..+.....    
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~----  633 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLES----  633 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccc----
Confidence            33334455777888888888887766668888888888888888888887 7888888888888888877664322    


Q ss_pred             CCCccccCCCCCCEEEccCCc
Q 041406          172 LLPPEIGELSLLEIFSSPSCS  192 (286)
Q Consensus       172 ~~~~~~~~l~~L~~L~l~~n~  192 (286)
                       +|.....+.+|++|.+....
T Consensus       634 -~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  634 -IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             -ccchhhhcccccEEEeeccc
Confidence             24555568888888776554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.55  E-value=4e-08  Score=93.51  Aligned_cols=160  Identities=26%  Similarity=0.348  Sum_probs=116.2

Q ss_pred             CCCCCCEEEccCCC--CCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccC
Q 041406          102 NLKRLKQLSLGENQ--LSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE  179 (286)
Q Consensus       102 ~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  179 (286)
                      .+++|+.|-+..|.  +....+..|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+.      .+|.++.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~------~LP~~l~~  616 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS------HLPSGLGN  616 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc------ccchHHHH
Confidence            44579999998886  55544556888999999999998877799999999999999999999885      47999999


Q ss_pred             CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC--CcccchhhhCCCCCCEEEcccccc----------------
Q 041406          180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL--KCSVPKAIGELRKLGILNLGSTQL----------------  241 (286)
Q Consensus       180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l----------------  241 (286)
                      +.+|.+|++..+.....+|.....+++|++|.+-....  +...-..+.++.+|+.+.......                
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~  696 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLL  696 (889)
T ss_pred             HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHh
Confidence            99999999998887656677777799999999865542  222223444555555444322221                


Q ss_pred             ---------cccCCccCCCCCCCCEEEcccCcCcc
Q 041406          242 ---------NGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       242 ---------~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                               ....+..+..+.+|+.|.+.++.++.
T Consensus       697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             HhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence                     00223345566777888887777763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=1.7e-09  Score=97.25  Aligned_cols=126  Identities=25%  Similarity=0.325  Sum_probs=81.1

Q ss_pred             CCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChh-ccCCCCC
Q 041406          129 QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEE-LSKLKFL  207 (286)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~~L  207 (286)
                      .|.+.+.++|.+. .+..++.-++.++.|++++|+++..       +.+..+++|++||+++|.+. .+|.. ...+ +|
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L  234 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KL  234 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-------HHHHhcccccccccccchhc-cccccchhhh-hh
Confidence            4555666666665 5556667777778888888877642       46677777888888888776 33432 2223 37


Q ss_pred             CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCc
Q 041406          208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP-AELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +.|.+++|.++ .+ ..+.++++|+.|++++|-+.+.-. ..+..+..|+.|.+.+|.+-
T Consensus       235 ~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            77778777775 22 456677777788887776664211 11344566777777777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.4e-08  Score=82.58  Aligned_cols=177  Identities=19%  Similarity=0.152  Sum_probs=114.1

Q ss_pred             CEEEEEcCCCCcccc-cCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-CCCCCc-cccccCCCCCEE
Q 041406           59 RVIWLVLPTHSLKGP-LSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-LSDFVP-SQLGVLTQLETL  133 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~-~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L  133 (286)
                      +++.+||+...++.. +..-+..+..|  +.+.++.+.+.+...+.+..+|+.|+++.+. ++.... -.+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            577888887777632 22234556666  7788888888888888888889999888765 333211 235678888888


Q ss_pred             ecCCCCCCCCCCcc-cCC-CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc-ccCChhccCCCCCCEE
Q 041406          134 SLGSNSFTGEIPSE-LGK-LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLKFLSML  210 (286)
Q Consensus       134 ~l~~n~l~~~~~~~-l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L  210 (286)
                      ++++|.+....-.. +.. -++|+.|+++++.-.-..  ..+..-..+++++.+||+++|... ......+.+++.|++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~--sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK--SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh--hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            88888766322111 111 356778888877532111  123344556788888998887543 2222345677888888


Q ss_pred             EcccCCCCcccchh---hhCCCCCCEEEcccc
Q 041406          211 DLSENPLKCSVPKA---IGELRKLGILNLGST  239 (286)
Q Consensus       211 ~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n  239 (286)
                      .++.|..  .+|..   +...|+|.+|+.-++
T Consensus       344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            8888864  34543   356688888887655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=2e-08  Score=88.92  Aligned_cols=172  Identities=30%  Similarity=0.379  Sum_probs=121.9

Q ss_pred             cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC
Q 041406          101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL  180 (286)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l  180 (286)
                      ..+..++.+++..|.+.. +-..+..+.+|+.+++..|.+. .+...+..+++|++|++++|.|+..       ..+..+
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i-------~~l~~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL-------EGLSTL  139 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc-------cchhhc
Confidence            355667777788887775 3345778899999999999998 4544478899999999999999753       456677


Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchh-hhCCCCCCEEEcccccccccCCc------------
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA-IGELRKLGILNLGSTQLNGSIPA------------  247 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~------------  247 (286)
                      +.|+.|++.+|.++..  ..+..+..|+.++++.|.+.. +... ...+.+++.+.+.+|.+...-..            
T Consensus       140 ~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~  216 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLL  216 (414)
T ss_pred             cchhhheeccCcchhc--cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcc
Confidence            7799999999999842  335558899999999999973 3332 47888999999999987632110            


Q ss_pred             -----cCCCCC---C--CCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406          248 -----ELGKCE---N--LMSVMLSCNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       248 -----~~~~~~---~--L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                           .+.++.   .  |+.+++++|++. .+++.+..++ +..+++..
T Consensus       217 ~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  217 DNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSS  264 (414)
T ss_pred             cccceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhh
Confidence                 011111   1  567777777776 4434444555 55555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=2.3e-08  Score=90.15  Aligned_cols=171  Identities=27%  Similarity=0.289  Sum_probs=102.7

Q ss_pred             CCCCCEEEccCCCCCCCC-ccccccCCCCCEEecCCCCCCCCCCcccCC-------------------------------
Q 041406          103 LKRLKQLSLGENQLSDFV-PSQLGVLTQLETLSLGSNSFTGEIPSELGK-------------------------------  150 (286)
Q Consensus       103 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-------------------------------  150 (286)
                      +++++.|.+-...-.+.. |-.+..+.+|+.|.+.+|.+..  ..++..                               
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence            344555554333322222 5567889999999999998762  111111                               


Q ss_pred             --CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCC
Q 041406          151 --LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGEL  228 (286)
Q Consensus       151 --l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  228 (286)
                        .-+|...+++.|.+.      .+..++.-++.++.|+|++|++++.  +.+..++.|++||++.|.++ .+|..-..-
T Consensus       161 ~~Wn~L~~a~fsyN~L~------~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g  231 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLV------LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG  231 (1096)
T ss_pred             hhhhhHhhhhcchhhHH------hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh
Confidence              123444444444442      1235556667788888888887743  36677778888888888876 454432222


Q ss_pred             CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccc-chhccCcc-cceEEccCC
Q 041406          229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL-PEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       229 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~-L~~l~l~~N  286 (286)
                      .+|+.|.+++|.++. +- .+.++.+|..||+++|-+.+.- ..-+..+. |++|+|.+|
T Consensus       232 c~L~~L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  232 CKLQLLNLRNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hhheeeeecccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            348888888887763 22 2567778888888888776421 11233444 777777766

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.24  E-value=2.5e-08  Score=72.00  Aligned_cols=60  Identities=28%  Similarity=0.411  Sum_probs=35.0

Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      +.++.++++.|.++ .+|+.+..++.|+.++++.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34555555555555 45555666666666666666665 44555555666666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=1.7e-07  Score=75.45  Aligned_cols=190  Identities=21%  Similarity=0.203  Sum_probs=133.3

Q ss_pred             cccccccc--cccCCCCCccccchh----hcCCCCCCEEEccCCCCCCCCccccc-------------cCCCCCEEecCC
Q 041406           77 SLFFLSSL--SDLSQNPLFGQLSRQ----VSNLKRLKQLSLGENQLSDFVPSQLG-------------VLTQLETLSLGS  137 (286)
Q Consensus        77 ~~~~l~~l--L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~-------------~l~~L~~L~l~~  137 (286)
                      ++.+++++  .++|.|-+....|+.    +.+-..|.+|.+++|.+...-...++             +-+.|+++....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            45567788  899999987776654    45678899999999987653222333             347899999999


Q ss_pred             CCCCCCCCc-----ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCC
Q 041406          138 NSFTGEIPS-----ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLS  208 (286)
Q Consensus       138 n~l~~~~~~-----~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~  208 (286)
                      |++. ..+.     .+..-..|+.+.+..|.|.......-.-..+..+.+|+.|++.+|.++..    +...+..|+.|+
T Consensus       167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            9987 3332     23444689999999998862211111122455678999999999998732    345677888999


Q ss_pred             EEEcccCCCCcccchhh----h--CCCCCCEEEcccccccccCCcc-----C--CCCCCCCEEEcccCcCcc
Q 041406          209 MLDLSENPLKCSVPKAI----G--ELRKLGILNLGSTQLNGSIPAE-----L--GKCENLMSVMLSCNALSG  267 (286)
Q Consensus       209 ~L~l~~n~l~~~~~~~~----~--~l~~L~~L~L~~n~l~~~~~~~-----~--~~~~~L~~L~l~~n~l~~  267 (286)
                      .|.+..|-++......+    .  ..++|+.|...+|.+.+.+...     +  ..+|.|..|.+.+|++..
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            99999998875443332    2  4688999999999766532211     1  457888888899998873

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=6e-07  Score=73.22  Aligned_cols=195  Identities=22%  Similarity=0.235  Sum_probs=106.7

Q ss_pred             cccCCCCCcc--ccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCC-CcccCCCCCCCEEEccC
Q 041406           85 SDLSQNPLFG--QLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEI-PSELGKLKNLKTLDLSG  161 (286)
Q Consensus        85 L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~  161 (286)
                      +|+.+|.+.+  .+...+.++|.|+.|+++.|++...+...-....+|+.|.+.+..+...- -..+..++.+++|+++.
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence            7777777654  23344567778888888887776544332245567777777776554322 23455677777777777


Q ss_pred             CccccccCCCCCCccccC-CCCCCEEEccCCcccc--cCChhccCCCCCCEEEcccCCCCccc-chhhhCCCCCCEEEcc
Q 041406          162 NEFNGTVRDKLLPPEIGE-LSLLEIFSSPSCSITG--PLPEELSKLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLG  237 (286)
Q Consensus       162 n~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~--~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~  237 (286)
                      |.+...-...   ..... -+.++++....|....  ..-..-..++++..+-+..|.+...- -......+.+.-|.|+
T Consensus       156 N~~rq~n~Dd---~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~  232 (418)
T KOG2982|consen  156 NSLRQLNLDD---NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG  232 (418)
T ss_pred             chhhhhcccc---ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc
Confidence            7432110000   00111 1234444444443210  00111123456666777777664221 1234456677778888


Q ss_pred             ccccccc-CCccCCCCCCCCEEEcccCcCccccch------hccCcc-cceEE
Q 041406          238 STQLNGS-IPAELGKCENLMSVMLSCNALSGSLPE------QLSELP-VLIFA  282 (286)
Q Consensus       238 ~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~------~l~~l~-L~~l~  282 (286)
                      .++|..- ..+.+.+++.|..|-++++++...+--      .+..++ +++|+
T Consensus       233 ~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  233 ANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             ccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            8877642 224567788888888888888743321      245555 65554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2e-06  Score=50.15  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=16.5

Q ss_pred             CCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      +|++|++++|.++ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555554 33434445555555555555444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.12  E-value=1.1e-07  Score=68.69  Aligned_cols=61  Identities=26%  Similarity=0.463  Sum_probs=30.8

Q ss_pred             CCCCCCEEEccCCCCCCCCcccc-ccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406          102 NLKRLKQLSLGENQLSDFVPSQL-GVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ....|...++++|.+.. .|+.| ..++.++++++++|.+. .+|..+..++.|+.++++.|.+
T Consensus        51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcc
Confidence            33444555555555554 23322 23345555555555555 4555555555555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.06  E-value=1.1e-05  Score=62.32  Aligned_cols=85  Identities=20%  Similarity=0.136  Sum_probs=38.4

Q ss_pred             ccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc--hhhhCCCCCCEEEcccccccccCC---ccCCC
Q 041406          177 IGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP--KAIGELRKLGILNLGSTQLNGSIP---AELGK  251 (286)
Q Consensus       177 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~  251 (286)
                      +..++.|.+|.+.+|+|+..-|.--..+++|..|.+.+|.+. .+.  ..+..+|+|++|.+-+|.++..--   -.+..
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence            344445555555555555433333333444555555555554 111  223445555555555555442110   11234


Q ss_pred             CCCCCEEEccc
Q 041406          252 CENLMSVMLSC  262 (286)
Q Consensus       252 ~~~L~~L~l~~  262 (286)
                      +|+|+.||++.
T Consensus       139 lp~l~~LDF~k  149 (233)
T KOG1644|consen  139 LPSLRTLDFQK  149 (233)
T ss_pred             cCcceEeehhh
Confidence            45555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=6.5e-06  Score=47.98  Aligned_cols=36  Identities=36%  Similarity=0.535  Sum_probs=16.7

Q ss_pred             CCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          230 KLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       230 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +|++|++++|+|+ .+|..++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 33333445555555555555544

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=2.1e-06  Score=70.09  Aligned_cols=179  Identities=19%  Similarity=0.196  Sum_probs=89.2

Q ss_pred             CCCCCCEEEccCCCCCCC--CccccccCCCCCEEecCCCCCCCCCCccc-CCCCCCCEEEccCCccccccCCCCCCcccc
Q 041406          102 NLKRLKQLSLGENQLSDF--VPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEIG  178 (286)
Q Consensus       102 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  178 (286)
                      .++.++.+++.+|.++..  +...+.+++.|++|+++.|++...+. .+ ....+|+.|-+.+..+....    ....+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~----~~s~l~  143 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQ----STSSLD  143 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhh----hhhhhh
Confidence            446666777777766532  22334566777777777776653222 22 24556666666666654322    234455


Q ss_pred             CCCCCCEEEccCCcccccC--ChhccCCC-CCCEEEcccCCCCcc--cchhhhCCCCCCEEEccccccccc-CCccCCCC
Q 041406          179 ELSLLEIFSSPSCSITGPL--PEELSKLK-FLSMLDLSENPLKCS--VPKAIGELRKLGILNLGSTQLNGS-IPAELGKC  252 (286)
Q Consensus       179 ~l~~L~~L~l~~n~~~~~~--p~~~~~~~-~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~  252 (286)
                      .++.+++|.++.|+.....  ......++ .+.++....|....-  .-..-+-.|++..+.+..|.+... -.+....+
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            5666677777666443111  11222222 444555544433200  001112345666666666655421 12234445


Q ss_pred             CCCCEEEcccCcCcccc-chhccCcc-cceEEccC
Q 041406          253 ENLMSVMLSCNALSGSL-PEQLSELP-VLIFAAEK  285 (286)
Q Consensus       253 ~~L~~L~l~~n~l~~~~-~~~l~~l~-L~~l~l~~  285 (286)
                      |.+..|+++.|++..-. .+++..+| |.-|.+++
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE  258 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence            66666667666665321 13455555 55555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.00  E-value=1.6e-06  Score=80.69  Aligned_cols=88  Identities=16%  Similarity=0.136  Sum_probs=36.6

Q ss_pred             CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCc-ccchhhhCCCCCCEEEcccccccccC------CccCCC
Q 041406          179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC-SVPKAIGELRKLGILNLGSTQLNGSI------PAELGK  251 (286)
Q Consensus       179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~  251 (286)
                      ++++|..||+++++++..  ..++.+++|+.|.+.+-.+.. ..-..+.++++|+.||++........      .+.-..
T Consensus       171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            344444444444444411  334444444444444443331 11123344555555555443322110      011123


Q ss_pred             CCCCCEEEcccCcCccc
Q 041406          252 CENLMSVMLSCNALSGS  268 (286)
Q Consensus       252 ~~~L~~L~l~~n~l~~~  268 (286)
                      +|.|+.||.++..+++.
T Consensus       249 LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEE  265 (699)
T ss_pred             CccccEEecCCcchhHH
Confidence            45566666665555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=0.00012  Score=63.52  Aligned_cols=135  Identities=16%  Similarity=0.252  Sum_probs=77.1

Q ss_pred             hcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC-ccccccCCCCCCcccc
Q 041406          100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIG  178 (286)
Q Consensus       100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~  178 (286)
                      +..+.+++.|++++|.++. +|.   --.+|+.|.+++|.-...+|..+  ..+|+.|++++| .+.      .+|    
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~------sLP----  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS------GLP----  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc------ccc----
Confidence            4567899999999998876 452   22469999999865444667654  358999999988 332      123    


Q ss_pred             CCCCCCEEEccCCccc--ccCChhccCCCCCCEEEcccCCCC--cccchhhhCCCCCCEEEcccccccccCCccCCCCCC
Q 041406          179 ELSLLEIFSSPSCSIT--GPLPEELSKLKFLSMLDLSENPLK--CSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN  254 (286)
Q Consensus       179 ~l~~L~~L~l~~n~~~--~~~p~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  254 (286)
                        ..|+.|++..+...  +.+|.      +|+.|.+.++...  ..+|..  -.++|++|++++|... ..|..+.  .+
T Consensus       112 --~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~S  178 (426)
T PRK15386        112 --ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ES  178 (426)
T ss_pred             --cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--cc
Confidence              34677777665432  23443      3444544322110  011110  1145666666666544 3333222  35


Q ss_pred             CCEEEcccC
Q 041406          255 LMSVMLSCN  263 (286)
Q Consensus       255 L~~L~l~~n  263 (286)
                      |+.|+++.+
T Consensus       179 Lk~L~ls~n  187 (426)
T PRK15386        179 LQSITLHIE  187 (426)
T ss_pred             CcEEEeccc
Confidence            666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=0.00011  Score=63.84  Aligned_cols=134  Identities=16%  Similarity=0.206  Sum_probs=80.0

Q ss_pred             ccccccc--cccCCCCCccccchhhcCC-CCCCEEEccCCCCCCCCccccccCCCCCEEecCCC-CCCCCCCcccCCCCC
Q 041406           78 LFFLSSL--SDLSQNPLFGQLSRQVSNL-KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN-SFTGEIPSELGKLKN  153 (286)
Q Consensus        78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~  153 (286)
                      +..+..+  |++++|.+. .+|    .+ ++|+.|.+++|.-...+|..+  ..+|+.|++++| .+. .+|.      +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------c
Confidence            3334555  888888764 344    23 369999998865444456544  258999999998 444 5554      4


Q ss_pred             CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc--ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCC
Q 041406          154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT--GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL  231 (286)
Q Consensus       154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  231 (286)
                      |+.|++..+.... +  ..+|.      +|+.|.+.+++..  ...|..  -.++|++|++++|... ..|..+.  .+|
T Consensus       114 Le~L~L~~n~~~~-L--~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SL  179 (426)
T PRK15386        114 VRSLEIKGSATDS-I--KNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESL  179 (426)
T ss_pred             cceEEeCCCCCcc-c--ccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccC
Confidence            7777777655421 1  11233      5667776443211  011111  1257889999888765 3444332  578


Q ss_pred             CEEEcccc
Q 041406          232 GILNLGST  239 (286)
Q Consensus       232 ~~L~L~~n  239 (286)
                      +.|.++.+
T Consensus       180 k~L~ls~n  187 (426)
T PRK15386        180 QSITLHIE  187 (426)
T ss_pred             cEEEeccc
Confidence            88888765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=5.3e-05  Score=58.64  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=77.5

Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEEE
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSVM  259 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~  259 (286)
                      .....+|+++|.+...  +.|..++.|.+|.+++|.|+..-|..-.-+++|+.|.|.+|.+.... ...+..+|.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3567788888887632  34667889999999999999555554456788999999999887321 12367789999999


Q ss_pred             cccCcCcccc---chhccCcc-cceEEccC
Q 041406          260 LSCNALSGSL---PEQLSELP-VLIFAAEK  285 (286)
Q Consensus       260 l~~n~l~~~~---~~~l~~l~-L~~l~l~~  285 (286)
                      +-+|+++..-   -..+..+| |+.||+.+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            9999987432   23567888 99998763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=2.7e-05  Score=72.76  Aligned_cols=128  Identities=20%  Similarity=0.278  Sum_probs=87.4

Q ss_pred             CCCCEEEccCCccccccCCCCCCccccC-CCCCCEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCC
Q 041406          152 KNLKTLDLSGNEFNGTVRDKLLPPEIGE-LSLLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELR  229 (286)
Q Consensus       152 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  229 (286)
                      .+|++|++++...-.    ..-|..++. +|+|+.|.+++-.+. +.+-....++++|..||+++++++. + ..+++++
T Consensus       122 ~nL~~LdI~G~~~~s----~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFS----NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhh----ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccc
Confidence            467777776644211    111233333 678888888776653 2334456788999999999999973 3 7788999


Q ss_pred             CCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCccc--cc----hhccCcc-cceEEccC
Q 041406          230 KLGILNLGSTQLNG-SIPAELGKCENLMSVMLSCNALSGS--LP----EQLSELP-VLIFAAEK  285 (286)
Q Consensus       230 ~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~--~~----~~l~~l~-L~~l~l~~  285 (286)
                      +|+.|.+.+=.+.. ..-..+..+++|+.||+|.......  +.    +.-..+| |+.||.|+
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            99999998877763 2223467899999999998765522  22    2235688 99999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00016  Score=58.25  Aligned_cols=90  Identities=24%  Similarity=0.218  Sum_probs=46.2

Q ss_pred             cccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc-CChhcc
Q 041406          124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP-LPEELS  202 (286)
Q Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~  202 (286)
                      ...+..|+.+.+.+..++ .. ..+..+++|+.|.++.|......   .++.....+++|+++++++|++... --..+.
T Consensus        39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~---~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSG---GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccc---cceehhhhCCceeEEeecCCccccccccchhh
Confidence            344556666666665554 22 23455667777777777332111   1233333446666666666666520 011233


Q ss_pred             CCCCCCEEEcccCCCC
Q 041406          203 KLKFLSMLDLSENPLK  218 (286)
Q Consensus       203 ~~~~L~~L~l~~n~l~  218 (286)
                      .+.+|..|++.+|..+
T Consensus       114 ~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhcchhhhhcccCCcc
Confidence            4455666666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.11  E-value=0.0028  Score=46.19  Aligned_cols=61  Identities=13%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccC
Q 041406           99 QVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG  161 (286)
Q Consensus        99 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  161 (286)
                      +|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......+..+.+++.+.+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            455666677776653 344444445666666666666553 4422223445555566666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.98  E-value=0.0029  Score=46.08  Aligned_cols=106  Identities=13%  Similarity=0.192  Sum_probs=41.4

Q ss_pred             cccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc
Q 041406          122 SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL  201 (286)
Q Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~  201 (286)
                      ..|..+.+|+.+.+.. .+.......|..+.+++.+.+.++ +....     ...+.+.++++.+.+.. .+.......+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~-----~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG-----DNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE------TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccc-----eeeeecccccccccccc-cccccccccc
Confidence            3456666777777664 344333345566666777666553 32111     13344454566666544 2221223344


Q ss_pred             cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406          202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG  237 (286)
Q Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  237 (286)
                      ..+++|+.+++..+ +.......+.+. +++.+.+.
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            44555555555443 321222333343 55555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.98  E-value=0.00047  Score=55.53  Aligned_cols=105  Identities=18%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             cCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCC--cccccCChhccCCCCCCEEEcccCCCCcccchh-
Q 041406          148 LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC--SITGPLPEELSKLKFLSMLDLSENPLKCSVPKA-  224 (286)
Q Consensus       148 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~-  224 (286)
                      ...+..|+.+.+.+..++.       -..+..+++|++|.++.|  .+++.++.....+++|+++++++|++..  +.. 
T Consensus        39 ~d~~~~le~ls~~n~gltt-------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl  109 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTT-------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL  109 (260)
T ss_pred             cccccchhhhhhhccceee-------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence            3345556666666665542       134556778888888888  5565566555666888888888888862  333 


Q ss_pred             --hhCCCCCCEEEcccccccccCC---ccCCCCCCCCEEEcc
Q 041406          225 --IGELRKLGILNLGSTQLNGSIP---AELGKCENLMSVMLS  261 (286)
Q Consensus       225 --~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~  261 (286)
                        +..+++|..|++.+|..+...-   ..|.-+++|++||-.
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence              3456667777777776653111   123345666666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=2.8e-05  Score=63.16  Aligned_cols=78  Identities=23%  Similarity=0.234  Sum_probs=38.2

Q ss_pred             CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc--hhhhCCCCCCEEEcccccccccCCc-----cCCC
Q 041406          179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP--KAIGELRKLGILNLGSTQLNGSIPA-----ELGK  251 (286)
Q Consensus       179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~  251 (286)
                      +++.|+.|.|+-|.|+..  ..+..+++|++|.|..|.|.+ +.  ..+.++|+|+.|+|..|.-.+..+.     .+..
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            455555555555555422  224455555566665555542 21  1234555666666665555544332     2334


Q ss_pred             CCCCCEEE
Q 041406          252 CENLMSVM  259 (286)
Q Consensus       252 ~~~L~~L~  259 (286)
                      +|+|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            55555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=7.2e-05  Score=60.82  Aligned_cols=99  Identities=19%  Similarity=0.237  Sum_probs=75.2

Q ss_pred             CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEE
Q 041406          180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSV  258 (286)
Q Consensus       180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L  258 (286)
                      +.+.+.|++-+|.+.+.  ....+++.|+.|.|+-|+|+. + ..+..+++|+.|.|..|.|...- ..++.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34566677777777642  335578899999999999973 3 56788999999999999887421 2467889999999


Q ss_pred             EcccCcCccccchh-----ccCcc-cceEE
Q 041406          259 MLSCNALSGSLPEQ-----LSELP-VLIFA  282 (286)
Q Consensus       259 ~l~~n~l~~~~~~~-----l~~l~-L~~l~  282 (286)
                      -|..|...|..+..     +..+| |++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999998776643     56677 77775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.30  E-value=0.0019  Score=31.29  Aligned_cols=21  Identities=43%  Similarity=0.540  Sum_probs=12.7

Q ss_pred             CCCEEEcccCcCccccchhccC
Q 041406          254 NLMSVMLSCNALSGSLPEQLSE  275 (286)
Q Consensus       254 ~L~~L~l~~n~l~~~~~~~l~~  275 (286)
                      +|++||+++|+++ .+|+.+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 56655544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.84  E-value=3.7e-05  Score=68.76  Aligned_cols=182  Identities=30%  Similarity=0.315  Sum_probs=108.6

Q ss_pred             cccCCCCCcccc----chhhcCCCCCCEEEccCCCCCCCCcccc----ccC-CCCCEEecCCCCCCCC----CCcccCCC
Q 041406           85 SDLSQNPLFGQL----SRQVSNLKRLKQLSLGENQLSDFVPSQL----GVL-TQLETLSLGSNSFTGE----IPSELGKL  151 (286)
Q Consensus        85 L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~l~~l  151 (286)
                      +.+.+|.+...-    ...+...+.|+.|++++|.+.......+    ... +.+++|++..|.++..    +.+.+...
T Consensus        92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~  171 (478)
T KOG4308|consen   92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN  171 (478)
T ss_pred             hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence            556666664432    3444566778888888887774322222    122 4566777777777642    33445557


Q ss_pred             CCCCEEEccCCccccccCCCCCCcccc----CCCCCCEEEccCCcccccC----ChhccCCCC-CCEEEcccCCCCcccc
Q 041406          152 KNLKTLDLSGNEFNGTVRDKLLPPEIG----ELSLLEIFSSPSCSITGPL----PEELSKLKF-LSMLDLSENPLKCSVP  222 (286)
Q Consensus       152 ~~L~~L~l~~n~~~~~~~~~~~~~~~~----~l~~L~~L~l~~n~~~~~~----p~~~~~~~~-L~~L~l~~n~l~~~~~  222 (286)
                      ..++.++++.|.+. ......++..+.    ...++++|.+++|.++...    ...+...+. +..+++..|.+.+...
T Consensus       172 ~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~  250 (478)
T KOG4308|consen  172 EHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV  250 (478)
T ss_pred             cchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence            77888888888763 111112333333    3667888888888776221    123334444 6668888888764422


Q ss_pred             ----hhhhCC-CCCCEEEcccccccccC----CccCCCCCCCCEEEcccCcCcc
Q 041406          223 ----KAIGEL-RKLGILNLGSTQLNGSI----PAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       223 ----~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                          +.+... ..++.++++.|.+++..    ...+..++.++++.++.|.+..
T Consensus       251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                223333 56788888888887533    3344556788888888888764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.17  E-value=0.011  Score=28.60  Aligned_cols=12  Identities=25%  Similarity=0.349  Sum_probs=5.2

Q ss_pred             CCEEEccCCccc
Q 041406          183 LEIFSSPSCSIT  194 (286)
Q Consensus       183 L~~L~l~~n~~~  194 (286)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.86  E-value=0.0038  Score=48.59  Aligned_cols=81  Identities=22%  Similarity=0.145  Sum_probs=40.6

Q ss_pred             CCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcc-cchhhh-CCCCCCEEEcccc-cccccCCccCCCCCCCCEE
Q 041406          182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS-VPKAIG-ELRKLGILNLGST-QLNGSIPAELGKCENLMSV  258 (286)
Q Consensus       182 ~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L  258 (286)
                      .++.++-++..|..+--+.+..++.++.|.+.+|.--+. --..++ -.++|+.|++++| .||+.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            455666666666554445555556666666655542210 001111 2355666666655 4554444445555555555


Q ss_pred             Eccc
Q 041406          259 MLSC  262 (286)
Q Consensus       259 ~l~~  262 (286)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.55  E-value=0.025  Score=25.36  Aligned_cols=13  Identities=46%  Similarity=0.501  Sum_probs=5.9

Q ss_pred             CCCEEEcccCcCc
Q 041406          254 NLMSVMLSCNALS  266 (286)
Q Consensus       254 ~L~~L~l~~n~l~  266 (286)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666654

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.36  E-value=0.00017  Score=64.61  Aligned_cols=180  Identities=24%  Similarity=0.213  Sum_probs=121.4

Q ss_pred             CCEEEccCCCCCCCCcc----ccccCCCCCEEecCCCCCCCCCC----cccCCC-CCCCEEEccCCccccccCCCCCCcc
Q 041406          106 LKQLSLGENQLSDFVPS----QLGVLTQLETLSLGSNSFTGEIP----SELGKL-KNLKTLDLSGNEFNGTVRDKLLPPE  176 (286)
Q Consensus       106 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~  176 (286)
                      +..+.+.+|.+......    .+...+.|..|++++|.+.+..-    ..+... ..++.|++..|.++... ...+.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g-~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG-AAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc-hHHHHHH
Confidence            78889999998765443    34567899999999999873221    223333 56788888888876432 2345566


Q ss_pred             ccCCCCCCEEEccCCcccc----cCChhc----cCCCCCCEEEcccCCCCccc----chhhhCCCC-CCEEEcccccccc
Q 041406          177 IGELSLLEIFSSPSCSITG----PLPEEL----SKLKFLSMLDLSENPLKCSV----PKAIGELRK-LGILNLGSTQLNG  243 (286)
Q Consensus       177 ~~~l~~L~~L~l~~n~~~~----~~p~~~----~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~  243 (286)
                      +.....++.++++.|.+..    .++..+    ....++++|++.+|.++...    ...+...+. +..+++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            7777889999999998741    122233    35778999999999887322    123344455 7779999998874


Q ss_pred             c----CCccCCCC-CCCCEEEcccCcCccccc----hhccCcc-cceEEccCC
Q 041406          244 S----IPAELGKC-ENLMSVMLSCNALSGSLP----EQLSELP-VLIFAAEKN  286 (286)
Q Consensus       244 ~----~~~~~~~~-~~L~~L~l~~n~l~~~~~----~~l~~l~-L~~l~l~~N  286 (286)
                      .    ....+... ..+++++++.|.+++.-.    +.+...+ ++.+.+++|
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence            3    22334444 678999999999986433    4455555 777777655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.38  E-value=0.01  Score=53.41  Aligned_cols=37  Identities=30%  Similarity=0.231  Sum_probs=15.7

Q ss_pred             CCCCCEEEccCCc-ccccCC-hhccCCCCCCEEEcccCC
Q 041406          180 LSLLEIFSSPSCS-ITGPLP-EELSKLKFLSMLDLSENP  216 (286)
Q Consensus       180 l~~L~~L~l~~n~-~~~~~p-~~~~~~~~L~~L~l~~n~  216 (286)
                      +++|++|.+.++. ++...- .....++.|++|+++.+.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4455555544444 232111 112334445555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.71  E-value=0.038  Score=27.20  Aligned_cols=18  Identities=28%  Similarity=0.263  Sum_probs=8.9

Q ss_pred             CCCCEEEcccCcCccccc
Q 041406          253 ENLMSVMLSCNALSGSLP  270 (286)
Q Consensus       253 ~~L~~L~l~~n~l~~~~~  270 (286)
                      ++|++|++++|+|++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            456666666666554433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.37  E-value=0.034  Score=43.42  Aligned_cols=83  Identities=19%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC-Chhcc-CCCCCCEEEcccC-CCCcccchhhhCC
Q 041406          152 KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL-PEELS-KLKFLSMLDLSEN-PLKCSVPKAIGEL  228 (286)
Q Consensus       152 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~l  228 (286)
                      -.++.++.++..|....     -+.+..++.++.|.+.+|.-.+.. -+.++ -.++|+.|++++| .|+......+.++
T Consensus       101 ~~IeaVDAsds~I~~eG-----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEG-----LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             ceEEEEecCCchHHHHH-----HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence            45778888888776432     245666777777877777543211 11121 3468899999876 4665555667788


Q ss_pred             CCCCEEEcccc
Q 041406          229 RKLGILNLGST  239 (286)
Q Consensus       229 ~~L~~L~L~~n  239 (286)
                      ++|+.|.+.+=
T Consensus       176 knLr~L~l~~l  186 (221)
T KOG3864|consen  176 KNLRRLHLYDL  186 (221)
T ss_pred             hhhHHHHhcCc
Confidence            88888877543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=90.30  E-value=0.097  Score=47.13  Aligned_cols=114  Identities=24%  Similarity=0.147  Sum_probs=56.1

Q ss_pred             CCCCCEEecCCCCCCCC--CCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCCc-ccccCChhcc
Q 041406          127 LTQLETLSLGSNSFTGE--IPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSCS-ITGPLPEELS  202 (286)
Q Consensus       127 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~  202 (286)
                      ++.|+.+.+..+.-...  .-......+.|+.|+++++ ......+ .........+.+|+.++++++. +++..-..+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            45566666655532212  1223345666666666652 1111110 0011223334667777777666 4433222222


Q ss_pred             -CCCCCCEEEcccCC-CCcccch-hhhCCCCCCEEEcccccc
Q 041406          203 -KLKFLSMLDLSENP-LKCSVPK-AIGELRKLGILNLGSTQL  241 (286)
Q Consensus       203 -~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l  241 (286)
                       .+++|+.|.+.++. +++..-. ....++.|++|+++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             26677777766665 4433222 223567777777776643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.58  E-value=0.0075  Score=48.16  Aligned_cols=87  Identities=18%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             cCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhC
Q 041406          148 LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE  227 (286)
Q Consensus       148 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (286)
                      +......+.||++.|++..      +-..+..++.+..++++-|.+. .+|..++....+..++...|+.+ ..|.+++.
T Consensus        38 i~~~kr~tvld~~s~r~vn------~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN------LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             hhccceeeeehhhhhHHHh------hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence            3445556666666665531      1233444455555555555554 45555555555555555555554 45555555


Q ss_pred             CCCCCEEEccccccc
Q 041406          228 LRKLGILNLGSTQLN  242 (286)
Q Consensus       228 l~~L~~L~L~~n~l~  242 (286)
                      .+.++++++..+.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            555555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.14  E-value=0.4  Score=23.91  Aligned_cols=15  Identities=47%  Similarity=0.691  Sum_probs=7.3

Q ss_pred             CCCCEEEccCCCCCC
Q 041406          104 KRLKQLSLGENQLSD  118 (286)
Q Consensus       104 ~~L~~L~l~~n~l~~  118 (286)
                      ++|+.|++++|.+..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.14  E-value=0.4  Score=23.91  Aligned_cols=15  Identities=47%  Similarity=0.691  Sum_probs=7.3

Q ss_pred             CCCCEEEccCCCCCC
Q 041406          104 KRLKQLSLGENQLSD  118 (286)
Q Consensus       104 ~~L~~L~l~~n~l~~  118 (286)
                      ++|+.|++++|.+..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.46  E-value=0.03  Score=44.81  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=54.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.||++.|++. .+...+..++.+  ++++.|.+ ...|+.+++...++.+++..|..+. .|.++...+.++++++.
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhc
Confidence            7888888888765 334455666666  77777766 3556666666777777777776654 67777777777777777


Q ss_pred             CCCCC
Q 041406          137 SNSFT  141 (286)
Q Consensus       137 ~n~l~  141 (286)
                      .+.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            76654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.30  E-value=1  Score=22.64  Aligned_cols=18  Identities=44%  Similarity=0.584  Sum_probs=12.9

Q ss_pred             CCCCEEEcccCcCccccch
Q 041406          253 ENLMSVMLSCNALSGSLPE  271 (286)
Q Consensus       253 ~~L~~L~l~~n~l~~~~~~  271 (286)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            45777888888877 6665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-09
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		4e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 43/236 (18%)
Query: 89  QNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL 148
            N L G++ + +  L+ L  L L  N  S  +P++LG    L  L L +N F G IP+ +
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 149 GKLKNLKTLD-LSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS-----------CSIT-- 194
            K       + ++G  +     D +     G  +LLE     S           C+IT  
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 195 ---------------------------GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE 227
                                      G +P+E+  + +L +L+L  N +  S+P  +G+
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 228 LRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE--QLSELPVLIF 281
           LR L IL+L S +L+G IP  +     L  + LS N LSG +PE  Q    P   F
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 731

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 41/231 (17%)
Query: 90  NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG 149
           N L G++   +SN   L  +SL  N+L+  +P  +G L  L  L L +NSF+G IP+ELG
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 150 KLKNLKTLDLSGNEFNGTV-------------------------RDKLLPPEIGELSLLE 184
             ++L  LDL+ N FNGT+                          D +     G  +LLE
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 185 IFSSPS-----------CSITGPLPEELSKLKF-----LSMLDLSENPLKCSVPKAIGEL 228
                S           C+IT  +    +   F     +  LD+S N L   +PK IG +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
             L ILNLG   ++GSIP E+G    L  + LS N L G +P+ +S L +L
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 114/276 (41%), Gaps = 24/276 (8%)
Query: 19  NP-DEQSLISFKNALESSHNLVSWNKTNPHC--YWVGVSCQRGRVIWLV---------LP 66
           NP D+Q+L+  K  L +   L SW  T   C   W+GV C      + V         LP
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 67  THXXXXXXXXXXXXXXXXXXXXQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126
                                  N L G +   ++ L +L  L +    +S  +P  L  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 127 LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186
           +  L TL    N+ +G +P  +  L NL  +   GN  +G +     P   G  S  ++F
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-----PDSYGSFS--KLF 176
Query: 187 SSPSCS---ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243
           +S + S   +TG +P   + L  L+ +DLS N L+       G  +    ++L    L  
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 244 SIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            +  ++G  +NL  + L  N + G+LP+ L++L  L
Sbjct: 236 DL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 144 IPSELGKLKNLKTLDLSG-NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS 202
           IPS L  L  L  L + G N   G +     PP I +L+ L        +++G +P+ LS
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPI-----PPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM-LS 261
           ++K L  LD S N L  ++P +I  L  L  +     +++G+IP   G    L + M +S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 262 CNALSGSLPEQLSELPVLIFAAEKN 286
            N L+G +P   + L +      +N
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRN 207

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 108 QLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT--GEIPSELGKLKNLKTLDLSGNEFN 165
            L    N L+D V    G LT+LETL L  N      +I     ++K+L+ LD+S N  +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
              +          LSL    +  + +I   LP        + +LDL  N +K S+PK +
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR------IKVLDLHSNKIK-SIPKQV 440
Query: 226 GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE 271
            +L  L  LN+ S QL         +  +L  + L  N    S P 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
           L  L L  NS T E+P+E+  L NL+ LDLS N          LP E+G    L+ F   
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS------LPAELGSCFQLKYFYFF 301
Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGIL 234
              +T  LP E   L  L  L +  NPL+    K + E    G++
Sbjct: 302 DNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLI 345

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  199 bits (509), Expect = 7e-63
 Identities = 74/271 (27%), Positives = 117/271 (43%), Gaps = 19/271 (7%)

Query: 21  DEQSLISFKNALESSHNLVSWNKTNPHCY--WVGVSC----QRGRVIWLVLPTHSLKG-- 72
           D+Q+L+  K  L +   L SW  T   C   W+GV C    Q  RV  L L   +L    
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66

Query: 73  PLSPSLFFLSSLSDL---SQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           P+  SL  L  L+ L     N L G +   ++ L +L  L +    +S  +P  L  +  
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL-SLLEIFSS 188
           L TL    N+ +G +P  +  L NL  +   GN  +G      +P   G    L    + 
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-----IPDSYGSFSKLFTSMTI 181

Query: 189 PSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE 248
               +TG +P   + L  L+ +DLS N L+       G  +    ++L    L   +  +
Sbjct: 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K 239

Query: 249 LGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           +G  +NL  + L  N + G+LP+ L++L  L
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (297), Expect = 2e-31
 Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 8/165 (4%)

Query: 121 PSQLGVLTQL----ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPE 176
              LG  T L     T    + ++ G +     +   +  LDLSG           +P  
Sbjct: 15  KKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP---IPSS 71

Query: 177 IGELSLLEIFS-SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235
           +  L  L         ++ GP+P  ++KL  L  L ++   +  ++P  + +++ L  L+
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLI 280
                L+G++P  +    NL+ +    N +SG++P+       L 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.9 bits (211), Expect = 3e-19
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 69  SLKGPLSPSLFFLSSLS-DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL 127
            L G + P+   L+    DLS+N L G  S    + K  +++ L +N L+  +   +G+ 
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243

Query: 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187
             L  L L +N   G +P  L +LK L +L++S N   G +      P+ G L   ++ +
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI------PQGGNLQRFDVSA 297

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS--IPAELGKCENLMSVMLS-CNALS 266
            D         +     +  ++  L+L    L     IP+ L     L  + +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 267 GSLPEQLSELPVLIF 281
           G +P  +++L  L +
Sbjct: 91  GPIPPAIAKLTQLHY 105

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (463), Expect = 1e-52
 Identities = 71/273 (26%), Positives = 113/273 (41%), Gaps = 21/273 (7%)

Query: 19  NPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLK---GPLS 75
             +   LISFK+ L   + L  W+     C + GV+C+  +V  + L +  L      +S
Sbjct: 11  YREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVS 70

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPS--QLGVLTQLE 131
            SL  L+ L    LS + + G +S        L  L L  N LS  V +   LG  + L+
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 132 TLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI---GELSLLEIFS 187
            L++ SN+       S   KL +L+ LDLS N  +G                   L+  +
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA-----NVVGWVLSDGCGELKHLA 184

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA 247
                I+G +   +S+   L  LD+S N     +P  +G+   L  L++   +L+G    
Sbjct: 185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

Query: 248 ELGKCENLMSVMLSCNALSGSLP-EQLSELPVL 279
            +  C  L  + +S N   G +P   L  L  L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  162 bits (413), Expect = 1e-45
 Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 29/235 (12%)

Query: 69  SLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126
            L+G +   L ++ +L    L  N L G++   +SN   L  +SL  N+L+  +P  +G 
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 127 LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE-- 184
           L  L  L L +NSF+G IP+ELG  ++L  LDL+ N FNGT     +P  + + S     
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT-----IPAAMFKQSGKIAA 567

Query: 185 --------------------IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA 224
                                 +       G   E+L++L   +  +++           
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 225 IGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
                 +  L++    L+G IP E+G    L  + L  N +SGS+P+++ +L  L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  155 bits (395), Expect = 4e-43
 Identities = 69/219 (31%), Positives = 101/219 (46%), Gaps = 11/219 (5%)

Query: 69  SLKGPLSPSLFF-LSSLS--DLSQNPLFGQLSRQVSNLK-RLKQLSLGENQLSDFVPSQL 124
           +  G L       +  L   DLS N   G+L   ++NL   L  L L  N  S  +   L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 125 G--VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182
                  L+ L L +N FTG+IP  L     L +L LS N  +GT     +P  +G LS 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-----IPSSLGSLSK 443

Query: 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
           L         + G +P+EL  +K L  L L  N L   +P  +     L  ++L + +L 
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 243 GSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
           G IP  +G+ ENL  + LS N+ SG++P +L +   LI+
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  152 bits (387), Expect = 5e-42
 Identities = 69/226 (30%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSD 118
            L L  +   G + P     S L    LS N   G+L       ++ LK L L  N+ S 
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 119 FVPSQLGVLT-QLETLSLGSNSFTGEIPSELGK--LKNLKTLDLSGNEFNGTVRDKLLPP 175
            +P  L  L+  L TL L SN+F+G I   L +     L+ L L  N F G      +PP
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-----IPP 412

Query: 176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235
            +   S L         ++G +P  L  L  L  L L  N L+  +P+ +  ++ L  L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
           L    L G IP+ L  C NL  + LS N L+G +P+ +  L  L  
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  148 bits (376), Expect = 1e-40
 Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 14/226 (6%)

Query: 63  LVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFV 120
           L +  + L G  S ++   + L   ++S N   G +      LK L+ LSL EN+ +  +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI 285

Query: 121 PSQL-GVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPE-IG 178
           P  L G    L  L L  N F G +P   G    L++L LS N F+G +     P + + 
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-----PMDTLL 340

Query: 179 ELSLLEIFSSPSCSITGPLPEELSKLKF-LSMLDLSENPLKCSVPKAIGE--LRKLGILN 235
           ++  L++        +G LPE L+ L   L  LDLS N     +   + +     L  L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
           L +    G IP  L  C  L+S+ LS N LSG++P  L  L  L  
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (373), Expect = 3e-40
 Identities = 62/244 (25%), Positives = 92/244 (37%), Gaps = 29/244 (11%)

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF 119
            L L  +   G + P+L   S L    LS N L G +   + +L +L+ L L  N L   
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179
           +P +L  +  LETL L  N  TGEIPS L    NL  + LS N   G      +P  IG 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-----IPKWIGR 512

Query: 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGS- 238
           L  L I    + S +G +P EL   + L  LDL+ N    ++P A+ +       N  + 
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 239 ---------------------TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
                                 +  G    +L +        ++     G          
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 278 VLIF 281
            ++F
Sbjct: 633 SMMF 636

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (350), Expect = 5e-37
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 61  IWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSD 118
            W+ L  + L G +   +  L +L+   LS N   G +  ++ + + L  L L  N  + 
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 119 FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIG 178
            +P+ +   +      + +N   G+    +      K    +GN             ++ 
Sbjct: 553 TIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI---RSEQLN 605

Query: 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGS 238
            LS     +  S    G           +  LD+S N L   +PK IG +  L ILNLG 
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 239 TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
             ++GSIP E+G    L  + LS N L G +P+ +S L +L
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (303), Expect = 8e-31
 Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 15/220 (6%)

Query: 69  SLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126
           S  G +   L    SL   DL+ N   G +   +          +  N ++      +  
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKN 580

Query: 127 LTQLETLSLGSN--SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE 184
               +      N   F G    +L +L      +++   + G        P       + 
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH-----TSPTFDNNGSMM 635

Query: 185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244
                   ++G +P+E+  + +L +L+L  N +  S+P  +G+LR L IL+L S +L+G 
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 245 IPAELGKCENLMSVMLSCNALSGSLPE--QLSELPVLIFA 282
           IP  +     L  + LS N LSG +PE  Q    P   F 
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 2e-22
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 31/188 (16%)

Query: 37  NLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFG 94
             ++ N      Y    +    +           +G  S  L  LS+ +  +++     G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 95  QLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNL 154
             S    N   +  L +  N LS ++P ++G +  L  L+LG N  +G IP E+G L+ L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 155 KTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE 214
             LDLS N+                               G +P+ +S L  L+ +DLS 
Sbjct: 683 NILDLSSNKL-----------------------------DGRIPQAMSALTMLTEIDLSN 713

Query: 215 NPLKCSVP 222
           N L   +P
Sbjct: 714 NNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 20  PDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLF 79
                    K     + NL+ +            +          + +    G  SP+  
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST-----RNPCNITSRVYGGHTSPTFD 629

Query: 80  FLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS 137
              S+   D+S N L G + +++ ++  L  L+LG N +S  +P ++G L  L  L L S
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTV 168
           N   G IP  +  L  L  +DLS N  +G +
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (284), Expect = 2e-28
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 63  LVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF- 119
                             L  L+  ++   P   +L   +  L  ++ +++  N+     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 120 -------VPSQLGVLTQLETLSLGSNSF-TGEIPSELGKLKNLKTLDLSGNEFNGTVRDK 171
                    +   V  +++ + +G N+  T  + + L K+K L  L+   N+  G     
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----- 344

Query: 172 LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA--IGELR 229
              P  G    L   +     IT          + +  L  + N LK  +P       + 
Sbjct: 345 -KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402

Query: 230 KLGILNLGSTQLNG-------SIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
            +  ++    ++          +     K  N+ S+ LS N +S    E  S    L  
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (270), Expect = 1e-26
 Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 27/240 (11%)

Query: 61  IWLVLPTHSLKGPLSPSLFFLSSLS--DLSQN--------PLFGQLSRQVSNLKRLKQLS 110
             + +        L   L  L  +   +++ N            Q        ++++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 111 LGENQLSDF-VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVR 169
           +G N L  F V + L  + +L  L    N   G++P   G    L +L+L+ N+      
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE--- 367

Query: 170 DKLLPPEI-GELSLLEIFSSPSCSITG-PLPEELSKLKFLSMLDLSENPLK-------CS 220
              +P    G    +E  S     +   P   +   +  +S +D S N +          
Sbjct: 368 ---IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLI 280
           +     +   +  +NL + Q++            L S+ L  N L+      L +     
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (259), Expect = 5e-25
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 13/207 (6%)

Query: 74  LSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
           +S ++  L+ L    +  +P   +   +          +    Q       +   L  L 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLT 252

Query: 132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLL---PPEIGELSLLEIFSS 188
            + + +     ++P+ L  L  ++ ++++ N      + K       +      ++I   
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 189 PSCSI-TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA 247
              ++ T P+   L K+K L ML+   N L+     A G   KL  LNL   Q+      
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 248 ELGKCENLMSVMLSCNALSGSLPEQLS 274
             G  E + ++  + N L   +P    
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFD 397

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 3e-24
 Identities = 36/233 (15%), Positives = 67/233 (28%), Gaps = 37/233 (15%)

Query: 76  PSLFFLSSLS-----DLSQNPL-------FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQ 123
           P++F   S+S     D S N +       F  L         +  ++L  NQ+S F    
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 124 LGVLTQLETLSLGSNSFTG-------EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPE 176
               + L +++L  N  T        +          L ++DL  N+         L  +
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK------LSDD 506

Query: 177 IGELSL--LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC------SVPKAIGEL 228
               +L  L        S +   P +      L    +               P+ I   
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
             L  L +GS  +   +  ++    N+  + +  N         +        
Sbjct: 566 PSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (251), Expect = 4e-24
 Identities = 38/253 (15%), Positives = 63/253 (24%), Gaps = 39/253 (15%)

Query: 33  ESSHNLVSWNKTNPHCYWV---GVSC-QRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLS 88
             +    +WN       W    GVS    GRV  L                       L 
Sbjct: 52  FGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGL----------------------SLE 89

Query: 89  QNPLFGQLSRQVSNLKRLKQLSLGENQLS----DFVPSQLGVLTQLETLSLGSNSFTGEI 144
                G++   +  L  L+ L+LG +        F P  +      E        +    
Sbjct: 90  GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 145 PSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKL 204
                        DL  +  N   + K +                S +IT  + + + +L
Sbjct: 150 VDYDP---REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRL 205

Query: 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264
             L    +  +P          E                +   +    ++L  V +    
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDVEVYNCP 260

Query: 265 LSGSLPEQLSELP 277
               LP  L  LP
Sbjct: 261 NLTKLPTFLKALP 273

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 9e-24
 Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 74  LSPSLF-FLSSLS--DLSQNPLFG-QLSRQVSNLKRLKQLSLGENQLSDFV-------PS 122
           +  +   F   +     + N L          ++  +  +    N++             
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG--TVRDKLLPPEIGEL 180
                  + +++L +N  +            L +++L GN          K         
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 181 SLLEIFSSPSCSITGPLPEEL--SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGS 238
            LL         +T  L ++   + L +L  +DLS N      P        L    + +
Sbjct: 488 YLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRN 545

Query: 239 T------QLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL 273
                  +     P  +  C +L  + +  N +   + E++
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 96.3 bits (240), Expect = 2e-22
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 4/159 (2%)

Query: 123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182
            L    ++  LSL     +G +P  +G+L  L+ L L  +      R    P  I     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL-FGPKGISANMS 134

Query: 183 LEIFSSPSCSITGPLPEELSKLKF--LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ 240
            E              +   +  F  L    ++ +P + S+ K+     K   +   S  
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 241 LNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           +   +   + +   L    +  +        +  E    
Sbjct: 195 I-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 18/155 (11%)

Query: 72  GPLSPSLFFLSSLS--DLSQNPLFG-QLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128
              + +      L+  DL  N L       + + L  L  + L  N  S F P+Q    +
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSS 536

Query: 129 QLETLSLG------SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182
            L+   +        N    E P  +    +L  L +  N+         +  +I     
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK------VNEKI--TPN 588

Query: 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217
           + +               +       M  L  +  
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (260), Expect = 4e-26
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 11/199 (5%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           +L   PL  Q   Q   L  L+ +++    L + +P  +     LETL+L  N     +P
Sbjct: 87  ELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 146 SELGKLKNLKTLDLSGN----EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL 201
           + +  L  L+ L +       E    +       E   L  L+        I   LP  +
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASI 202

Query: 202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLS 261
           + L+ L  L +  +PL  ++  AI  L KL  L+L       + P   G    L  ++L 
Sbjct: 203 ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 262 -CNALSGSLPEQLSELPVL 279
            C+ L  +LP  +  L  L
Sbjct: 262 DCSNLL-TLPLDIHRLTQL 279

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 1e-25
 Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 20/217 (9%)

Query: 74  LSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
                F LS L    +    L  +L   +     L+ L+L  N L    P+ +  L +L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLR 153

Query: 132 TLSLGSNSFTGEIPSELGK---------LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182
            LS+ +     E+P  L           L NL++L L           + LP  I  L  
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI------RSLPASIANLQN 207

Query: 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
           L+     +  ++  L   +  L  L  LDL       + P   G    L  L L      
Sbjct: 208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 243 GSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            ++P ++ +   L  + L        LP  +++LP  
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 7e-25
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 19/215 (8%)

Query: 74  LSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSL-GENQLSDF--------VPS 122
           L  ++   + L    L++NPL   L   +++L RL++LS+    +L++            
Sbjct: 119 LPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182
           +   L  L++L L        +P+ +  L+NLK+L +  +  +       L P I  L  
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------LGPAIHHLPK 230

Query: 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
           LE      C+     P        L  L L +     ++P  I  L +L  L+L      
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 243 GSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
             +P+ + +      +++  +  +     +    P
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 25/190 (13%), Positives = 49/190 (25%), Gaps = 17/190 (8%)

Query: 93  FGQLSRQVSNLKRLKQLSL-GENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKL 151
            G       +    + L   G   L  +    L    +                      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPY-HDVLSQWQRHYNADRNRWHS----AWRQANS 55

Query: 152 KNLKTLDLSGNEFNGTVRDKLLPPEIGELSL--LEIFSSPSCSITGPLPEELSKLKFLSM 209
            N +    +G         K     + + +          S  +    P++  +L  L  
Sbjct: 56  NNPQIETRTGRAL------KATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQH 108

Query: 210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL 269
           + +    L   +P  + +   L  L L    L  ++PA +     L  + +        L
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 270 PEQLSELPVL 279
           PE L+     
Sbjct: 167 PEPLASTDAS 176

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (265), Expect = 6e-26
 Identities = 58/222 (26%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPL--FGQLSRQVSNLKRLKQLSLGENQLS 117
              L   S KG  + S   L SL   DLS+N L   G  S+       LK L L  N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 118 DFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPE 176
               S    L QLE L    ++       S    L+NL  LD+S                
Sbjct: 387 TM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-----AFNGI 440

Query: 177 IGELSLLEIFSSPSCSITGPL-PEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235
              LS LE+      S      P+  ++L+ L+ LDLS+  L+   P A   L  L +LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
           +                 +L  +  S N +  S  ++L   P
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 2e-23
 Identities = 49/205 (23%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 74  LSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
           L  S   L    DLS NPL    S    +   L+ L L   ++          L+ L TL
Sbjct: 26  LPFSTKNL----DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSI 193
            L  N            L +L+ L              L    IG L  L+  +     I
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHNLI 136

Query: 194 TG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGI----LNLGSTQLNGSIPAE 248
               LPE  S L  L  LDLS N ++      +  L ++ +    L+L    +N  I   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG 195

Query: 249 LGKCENLMSVMLSCNALSGSLPEQL 273
             K   L  + L  N  S ++ +  
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 43/207 (20%), Positives = 64/207 (30%), Gaps = 10/207 (4%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLS--DFVPSQLGVLTQLETLS 134
               L SL  L+     G  +    +L  L+ L L  N LS            T L+ L 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 135 LGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSI 193
           L  N     + S    L+ L+ LD   +         +    +   L  L          
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYLDISHTHT 433

Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLGSTQLNGSIPAELGKC 252
                   + L  L +L ++ N  + +  P    ELR L  L+L   QL    P      
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 253 ENLMSVMLSCNALSGSLPEQLSELPVL 279
            +L  + +S N            L  L
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSL 520

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 5e-17
 Identities = 35/161 (21%), Positives = 46/161 (28%), Gaps = 8/161 (4%)

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179
           +P  L      + L L  N               L+ LDLS  E        +       
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-----IEDGAYQS 74

Query: 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST 239
           LS L         I        S L  L  L   E  L       IG L+ L  LN+   
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 240 QLNG-SIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            +    +P       NL  + LS N +       L  L  +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 36/200 (18%)

Query: 69  SLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLG 125
             +   +     LSSL    ++ N         + + L+ L  L L + QL    P+   
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 126 VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185
            L+ L+ L++  N+F          L +L+ LD S N                       
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN----------------------- 528

Query: 186 FSSPSCSITGPLPEELSKL-KFLSMLDLSENPLKCSVPKA--IGELRKLGILNLGSTQLN 242
                  I     +EL      L+ L+L++N   C+      +  ++    L +   ++ 
Sbjct: 529 ------HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 243 GSIPAELGKCENLMSVMLSC 262
            + P++      ++S+ ++C
Sbjct: 583 CATPSDKQG-MPVLSLNITC 601

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 16/202 (7%)

Query: 81  LSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF 140
           +        +     +    + L  +   SL    +              + L L +  F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKF 316

Query: 141 TGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI--FSSPSCSITGPLP 198
                 +L  LK L      G                 +L  LE    S    S  G   
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGN----------AFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 199 EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE-LGKCENLMS 257
           +       L  LDLS N +  ++      L +L  L+   + L             NL+ 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 258 VMLSCNALSGSLPEQLSELPVL 279
           + +S      +     + L  L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSL 447

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 14/205 (6%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136
            L  +SS   L    +        S     + L L   +   F   +L  L +L   S  
Sbjct: 280 CLTNVSSF-SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP 196
                         L +L+ LDLS N  +               + L+        +   
Sbjct: 337 GG-----NAFSEVDLPSLEFLDLSRNGLSFK---GCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 197 LPEELSKLKFLSMLDLSENPLKCSVPK-AIGELRKLGILNLGSTQLNGSIPAELGKCENL 255
           +      L+ L  LD   + LK          LR L  L++  T    +         +L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 256 MSVMLSCNALSGSL-PEQLSELPVL 279
             + ++ N+   +  P+  +EL  L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNL 472

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 40/239 (16%)

Query: 69  SLKGPLSPSLFFLSSLS--DLSQNPL-FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG 125
           +L    +  +  L +L   +++ N +   +L    SNL  L+ L L  N++     + L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 126 VLTQ---------------------------LETLSLGSNSFTGEIPSE-LGKLKNLKTL 157
           VL Q                           L  L+L +N  +  +    +  L  L+  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 158 DLSGNEFNGTVRDKLLPP----EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLS 213
            L   EF      +         +  L++ E   +        + +  + L  +S   L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 214 ENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQ 272
              ++               L L + +       +L   + L     + N    +  E 
Sbjct: 291 SVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSEV 344

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (253), Expect = 2e-24
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 17/209 (8%)

Query: 74  LSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
           +S ++  L+ L     + +P         +     +  +    +  +        L  L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL----LPPEIGELSLLEIFS 187
            + L +     ++P  L  L  L++L+++ N      + K     L  +      ++IF 
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 188 SPSCSITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP 246
               ++   P    L K+  L +LD   N +     +A G   KL  L L   Q+   IP
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIP 611

Query: 247 AELGK-CENLMSVMLSCNALSGSLPEQLS 274
            +     + +  +  S N L   +P   +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 1e-23
 Identities = 40/314 (12%), Positives = 84/314 (26%), Gaps = 68/314 (21%)

Query: 15  DDEQNPDEQSLISFKNAL------------ESSHNLVSWNKTNPHCYWVGVSC----QRG 58
             E   D ++L +   AL             ++ + ++WN       W           G
Sbjct: 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG 323

Query: 59  RVIWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLS------------------- 97
           RV  L L     KG +  ++  L+ L       +                          
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 98  ------RQVSNLKRLKQLSLGENQLSD-----FVPSQLGVLTQLETLSLGSNSFTGEIPS 146
                   +   +RL    L ++ ++       +     +  +   +   +N  T  I  
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK 442

Query: 147 ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF 206
            + +L  L+ +  + + F            +          S             S LK 
Sbjct: 443 AIQRLTKLQIIYFANSPFTY------DNIAVDWEDAN----SDYAKQYENEELSWSNLKD 492

Query: 207 LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG---------SIPAELGKCENLMS 257
           L+ ++L   P    +P  + +L +L  LN+   +             +  +      +  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 258 VMLSCNALSGSLPE 271
             +  N L      
Sbjct: 553 FYMGYNNLEEFPAS 566

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.8 bits (246), Expect = 2e-23
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 29/239 (12%)

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPL---------FGQLSRQVSNLKRLKQLS 110
            + L        L   L+ L  L   +++ N           + +L+       +++   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 111 LGENQLSDFVPSQ-LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVR 169
           +G N L +F  S  L  + +L  L    N          G    L  L L  N+      
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE--- 609

Query: 170 DKLLPPEIGE-LSLLEIFSSPSCSITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIG- 226
              +P +       +E        +   P       +  +  +D S N +  S  + I  
Sbjct: 610 ---IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISC 665

Query: 227 -----ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLI 280
                +      + L   ++             + +++LS N ++      L       
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 5e-23
 Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 22/222 (9%)

Query: 73  PLSPSLFFLSSLS--DLSQNPLFGQLS--RQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128
           P S SL  +  L   D   N    ++          +L  L L  NQ+ +          
Sbjct: 564 PASASLQKMVKLGLLDCVHN----KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 129 QLETLSLGSNSFTGEIPS--ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186
           Q+E L    N     IP+      +  + ++D S N+     R+     +  +       
Sbjct: 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLK-------CSVPKAIGELRKLGILNLGST 239
           +     I     E  +    +S + LS N +                    L  ++L   
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 240 QLNGSIPAEL--GKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           +L  S+  +        L ++ +S N  S S P Q      L
Sbjct: 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQL 778

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.5 bits (240), Expect = 1e-22
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 22/224 (9%)

Query: 72  GPLSPSLFFLSSLSDLSQNPLFGQLSR-QVSNLKRLKQLSLGENQLSD-----FVPSQLG 125
              +  +  L      S N L    +     ++  +  +    N++              
Sbjct: 615 CAFTDQVEGL----GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 126 VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL--LPPEIGELSLL 183
                 T++L  N               + T+ LS N       + L           LL
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 184 EIFSSPSCSITGPLPEEL--SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST-- 239
                    +T  L ++   + L +LS +D+S N    S P       +L    +     
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRD 788

Query: 240 ----QLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
               ++    P  +  C +L+ + +  N +     +   +L +L
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 23/207 (11%)

Query: 94  GQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKN 153
            Q    + N  R+  LSL        VP  +G LT+L+ LS G++S T        +   
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 154 LKTLDLSGNEFNGTVRDKLL--PPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLD 211
               +   +      +   L     +    LL+   + +  +     +    LK   + +
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 212 LSENPLKCSVPKAIGELRKLGILNLGSTQLNG-------------------SIPAELGKC 252
           L+ N +   + KAI  L KL I+   ++                       +        
Sbjct: 433 LT-NRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 253 ENLMSVMLSCNALSGSLPEQLSELPVL 279
           ++L  V L        LP+ L +LP L
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPEL 517

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 3e-15
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 15/178 (8%)

Query: 70  LKGPLSPSLFFLSSLS--DLSQNPL-------FGQLSRQVSNLKRLKQLSLGENQLSDFV 120
           ++   +      S +S   LS N +                N   L  + L  N+L+   
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 121 PS-QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVR-DKLLPPEIG 178
              +   L  L  + +  N F+   P++      LK   +         R  +  P  I 
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNL 236
               L      S  I   + E+L     L +LD+++NP       ++    + G+  L
Sbjct: 804 TCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 20/162 (12%)

Query: 72  GPLSPSLFFLSSLS--DLSQNPLFG-QLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128
            P   +      L+  DL  N L       + + L  L  + +  N  S F P+Q    +
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSS 776

Query: 129 QLETLSL------GSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE-LS 181
           QL+   +        N    + P+ +    +L  L +  N+         +  ++   L 
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK------VDEKLTPQLY 830

Query: 182 LLEIFSSPSCSITGPLPEELSKLKFLS-MLDLSENPLKCSVP 222
           +L+I  +P+ SI   +      ++    +L   +        
Sbjct: 831 ILDIADNPNISI--DVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (253), Expect = 3e-24
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 8/199 (4%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           +L  N L     +  +    L +L L  N +     +       L TL L  N  +    
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
               +L+NL+ L LS N+      ++L   +I   S L+     S  I    P     + 
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEEL---DIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 206 FLSMLDLSENPLKCSVPKAIGE---LRKLGILNLGSTQLNGSIPAELGKCE--NLMSVML 260
            L  L L+   L  S+ + +        +  L+L ++QL+ +        +  NL  + L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 261 SCNALSGSLPEQLSELPVL 279
           S N L+    +  + LP L
Sbjct: 256 SYNNLNVVGNDSFAWLPQL 274

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 8e-24
 Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 7/191 (3%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           +L+ N L    +   +   +L  L +G N +S   P     L  L+ L+L  N  +    
Sbjct: 31  NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
                  NL  L L  N         +      +   L         ++        +L+
Sbjct: 91  KTFAFCTNLTELHLMSNSIQK-----IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 206 FLSMLDLSENPLKCSVPKAIG--ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCN 263
            L  L LS N ++    + +       L  L L S Q+    P        L  + L+  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 264 ALSGSLPEQLS 274
            L  SL E+L 
Sbjct: 206 QLGPSLTEKLC 216

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.1 bits (237), Expect = 4e-22
 Identities = 49/234 (20%), Positives = 72/234 (30%), Gaps = 12/234 (5%)

Query: 61  IWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSD 118
               +   SL      S  +L  L   ++  N + G  S   + L  LK LSL  +  S 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 119 FVPSQLG----VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLP 174
              +         + L  L+L  N  +         L +L+ LDL  NE        L  
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE----LTG 423

Query: 175 PEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK--CSVPKAIGELRKLG 232
            E   L  +                  + +  L  L L    LK   S P     LR L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 233 ILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
           IL+L +  +       L   E L  + L  N L+          P+       +
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 1e-21
 Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 26/214 (12%)

Query: 69  SLKGPLSPSLF-FLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF--VPSQ 123
            +   L+   +  L ++    LS N          + +  L++L L    L +    PS 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLL 183
              L  L  L L +N+        L  L+ L+ LDL  N                     
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA------------------ 517

Query: 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243
                   +  G     L  L  L +L+L  N       +   +L +L I++LG   LN 
Sbjct: 518 ---RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 244 SIPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
              +      +L S+ L  N ++    +      
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 49/251 (19%), Positives = 75/251 (29%), Gaps = 40/251 (15%)

Query: 69  SLKGPLSPSLFFLSSLS-----DLSQNPLFGQLSRQVSNLK--RLKQLSLGENQLSDFVP 121
            L   L+  L    + +      LS + L    +     LK   L  L L  N L+    
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 122 SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD----KLLPPEI 177
                L QLE   L  N+        L  L N++ L+L  +    ++      K+     
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 178 GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV---------------- 221
             L  LE  +     I G      + L  L  L LS +                      
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 222 ------------PKAIGELRKLGILNLGSTQLNGSIPA-ELGKCENLMSVMLSCNALSGS 268
                         A   L  L +L+LG  ++   +   E    EN+  + LS N     
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 269 LPEQLSELPVL 279
                + +P L
Sbjct: 446 TRNSFALVPSL 456

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 105 RLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164
             +       +L+  VP  L   T +  L+L  N       +   +   L +LD+  N  
Sbjct: 5   SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA 224
           +      L P    +L +L++ +     ++    +  +    L+ L L  N ++      
Sbjct: 62  SK-----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 225 IGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
             + + L  L+L    L+ +      + ENL  ++LS N +     E+L    
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187
              E         T ++P +L    N+  L+L+ N+        L        S L    
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-----LPAANFTRYSQLTSLD 55

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA 247
               +I+   PE   KL  L +L+L  N L     K       L  L+L S  +      
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 248 ELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
              K +NL+++ LS N LS +      +L  L
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 28/138 (20%)

Query: 83  SLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
           +L+ L ++   G     +  L  L  L+L  N   +        L +L+ + LG N+   
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 143 EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS 202
              S      +LK+L+L  N      +    P                            
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA--------------------------- 607

Query: 203 KLKFLSMLDLSENPLKCS 220
             + L+ LD+  NP  C+
Sbjct: 608 -FRNLTELDMRFNPFDCT 624

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 49/218 (22%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 65  LPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQL 124
           +     +G    S+  +    +L ++  F   S        L++L L    LS+ +PS L
Sbjct: 243 ISPAVFEGLCEMSVESI----NLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGL 297

Query: 125 GVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE 184
             L+ L+ L L +N F            +L  L + GN     +    L      L  L 
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL----ENLENLR 353

Query: 185 I--FSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
               S      +     +L  L  L  L+LS N       +A  E  +L +L+L  T+L 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 243 GSIP-AELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
                +       L  + LS + L  S  +    LP L
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 47/220 (21%), Positives = 77/220 (35%), Gaps = 12/220 (5%)

Query: 69  SLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQL--SDFVPSQ 123
             +     S     SL+   +  N    +L      NL+ L++L L  + +  SD    Q
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLL 183
           L  L+ L++L+L  N           +   L+ LDL+                   L LL
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF----QNLHLL 427

Query: 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK---CSVPKAIGELRKLGILNLGSTQ 240
           ++ +     +     +    L  L  L+L  N           ++  L +L IL L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 241 LNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLI 280
           L+          + +  V LS N L+ S  E LS L  + 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 10/212 (4%)

Query: 68  HSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL 127
           + + G L  S   L    + S N L    +   S L  L  L L   Q+           
Sbjct: 25  NEIPGTLPNSTECL----EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80

Query: 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187
            +L+TL L +N       + L   K LK L       +      +    +     LE   
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-----IDFIPLHNQKTLESLY 135

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN-GSIP 246
             S  I+     +    + L +LD   N +     + +  L++   L+L     +   I 
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 247 AELGKCENLMSVMLSCNALSGSLPEQLSELPV 278
                     S+          + + L    +
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 25/218 (11%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            L+ NPL       +S  K LK L   +  +S      L     LE+L LGSN  +    
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRD--------------------KLLPPEIGELSLLEI 185
            +    + LK LD   N  +   ++                      + P   + ++ + 
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 186 FSSPSCSITGPLPEELSKLKF--LSMLDLSENPLKCSVPKAIGELRKLGI--LNLGSTQL 241
            +         + + L       L +    +   +   P     L ++ +  +NL     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 242 NGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
                        L  + L+   LS  LP  L  L  L
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 74  LSPSLF-FLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           L    F     L   DL+   L  + ++    NL  LK L+L  + L          L  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 130 LETLSLGSNSFTGEI---PSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186
           L+ L+L  N F        + L  L  L+ L LS                          
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC------------------------ 486

Query: 187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP 246
                 ++       + LK ++ +DLS N L  S  +A+  L+ +  LNL S  ++  +P
Sbjct: 487 -----DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

Query: 247 AELGKCENLMSVMLSCNALSGS 268
           + L       ++ L  N L  +
Sbjct: 541 SLLPILSQQRTINLRQNPLDCT 562

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.0 bits (219), Expect = 3e-20
 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 24/209 (11%)

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSR--QVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
             L  ++ L+   ++++    ++     ++NL  L  LSL  NQ+ D  P  L  LT L 
Sbjct: 149 SPLSNMTGLNYLTVTES----KVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLH 202

Query: 132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC 191
             +   N  T   P  +  +  L +L +  N+             +  LS L      + 
Sbjct: 203 YFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-------SPLANLSQLTWLEIGTN 253

Query: 192 SITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK 251
            I+      +  L  L ML++  N +  S    +  L +L  L L + QL       +G 
Sbjct: 254 QISDI--NAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 252 CENLMSVMLSCNALSGSLP-EQLSELPVL 279
             NL ++ LS N ++   P   LS++   
Sbjct: 310 LTNLTTLFLSQNHITDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 15/166 (9%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
           ++L  L   +   NQ++D  P  +  +T+L +L +G+N  T   P  L  L  L  L++ 
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            N+ +           + +L+ L++ +  S  I+      L+ L  L+ L L+ N L   
Sbjct: 252 TNQISD-------INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
             + IG L  L  L L    +    P  L     + S   +   + 
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 22/206 (10%)

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
             L  L  L+   +  N +       + NL  L++L L E+ +SD   S L  LT++ +L
Sbjct: 82  SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSL 137

Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSI 193
           +LG+N       S L  +  L  L ++ ++             I  L+ L   S     I
Sbjct: 138 NLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD-------VTPIANLTDLYSLSLNYNQI 189

Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE 253
                  L+ L  L       N +  +    +  + +L  L +G+ ++    P  L    
Sbjct: 190 ED--ISPLASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 254 NLMSVMLSCNALSGSLPEQLSELPVL 279
            L  + +  N +S      + +L  L
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKL 267

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 17/180 (9%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
           ++L    +  L +  ++D V      L  +  L +            +  L NL+ L+L+
Sbjct: 19  ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLN 74

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
           GN+             +  L  L      +  IT      L  L  L  L L+E+ +  S
Sbjct: 75  GNQITD-------ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNI--S 123

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP-EQLSELPVL 279
               +  L K+  LNLG+     S  + L     L  + ++ + +    P   L++L  L
Sbjct: 124 DISPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL 182

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.4 bits (212), Expect = 5e-19
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 17/180 (9%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           +++L  L  L L  NQ+S+  P  L  LT+L  L LG+N  +   P  L  L  L  L+L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
           + N+             I  L  L   +    +I+      +S L  L  L    N +  
Sbjct: 295 NENQLED-------ISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKV-- 343

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           S   ++  L  +  L+ G  Q++   P  L     +  + L+  A + +     + + + 
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
           + L  L+ L    NQ+SD  P  LG+LT L+ LSL  N         L  L NL  LDL+
Sbjct: 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 251

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            N+ +           +  L+ L      +  I+      L+ L  L+ L+L+EN L   
Sbjct: 252 NNQISN-------LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--E 300

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
               I  L+ L  L L    ++   P  +     L  +    N +S      L+ L  +
Sbjct: 301 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.2 bits (188), Expect = 7e-16
 Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 19/181 (10%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           V  L  L Q++   NQL+D  P  L  LT+L  + + +N      P  L  L NL  L L
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
             N+             +  L+ L      S +I+      LS L  L  L         
Sbjct: 120 FNNQITD-------IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD- 169

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP-EQLSELPV 278
              K +  L  L  L++ S ++  S  + L K  NL S++ + N +S   P   L+ L  
Sbjct: 170 --LKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 225

Query: 279 L 279
           L
Sbjct: 226 L 226

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 18/195 (9%)

Query: 85  SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEI 144
           + ++Q+    Q+    + L    +  LG+  ++D V      L Q+ TL           
Sbjct: 6   ATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--S 60

Query: 145 PSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKL 204
              +  L NL  ++ S N+             +  L+ L      +  I       L+ L
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTD-------ITPLKNLTKLVDILMNNNQIAD--ITPLANL 111

Query: 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264
             L+ L L  N +  +    +  L  L  L L S  ++    + L    +L  +      
Sbjct: 112 TNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV 167

Query: 265 LSGSLPEQLSELPVL 279
                   L+ L  L
Sbjct: 168 TDLKPLANLTTLERL 182

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 36/161 (22%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
               N +       ++NL  +  LS G NQ+SD  P  L  LT++  L L   ++T    
Sbjct: 337 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
           +      N+   +   N     +                             P  +S   
Sbjct: 393 N---YKANVSIPNTVKNVTGALI----------------------------APATISDGG 421

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP 246
             +  D++ N       +      +   +  G+T  +G++ 
Sbjct: 422 SYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 8/202 (3%)

Query: 68  HSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP-SQL 124
            S  G  S S    +SL   DLS N     +S     L+ L+ L    + L      S  
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 125 GVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE 184
             L +L  L +   +   +       L +L TL ++GN F        L       + L 
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN----TLSNVFANTTNLT 476

Query: 185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244
                 C +          L  L +L++S N L         +L  L  L+    ++  S
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 245 IPAELGKCENLMSVMLSCNALS 266
                   ++L    L+ N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 45/213 (21%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 71  KGPLSPSLFFLSSLS--DLSQNPL--FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126
           KG +S     L SLS  DLS+N L   G  S        L+ L L  N       +    
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMG 397

Query: 127 LTQLETLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185
           L +L+ L    ++       S    L+ L  LD+S                   L+ L  
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-----DFDGIFLGLTSLNT 452

Query: 186 FSSPSCSITGPLPEE-LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244
                 S          +    L+ LDLS+  L+         L +L +LN+    L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
             +   +  +L ++  S N +  S         
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 47/218 (21%), Positives = 71/218 (32%), Gaps = 12/218 (5%)

Query: 69  SLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126
            LK   S S    S L   DLS+  +     +    L  L  L L  N +  F P     
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 127 LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186
           LT LE L              +G+L  LK L+++ N  +       LP     L+ L   
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHV 158

Query: 187 SSPSCSITGPLPEELSKLKFLSM----LDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
                 I      +L  L+        LD+S NP+   +     +  KL  L L     +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNS 217

Query: 243 GSIPAELGK-CENLMSVMLSCNALSGSLPEQLSELPVL 279
            +I     +    L    L           ++ E  ++
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 41/206 (19%), Positives = 60/206 (29%), Gaps = 11/206 (5%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPS--QLGVLTQLETLS 134
            L FL SL  L+ N     +S +   L  L  L L  N LS              L  L 
Sbjct: 326 DLPFLKSL-TLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 135 LGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT 194
           L  N     + +    L+ L+ LD   +                 L  L        +  
Sbjct: 383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF----LSLEKLLYLDISYTNTK 437

Query: 195 GPLPEELSKLKFLSMLDLSENPLK-CSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE 253
                    L  L+ L ++ N  K  ++         L  L+L   QL            
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 254 NLMSVMLSCNALSGSLPEQLSELPVL 279
            L  + +S N L        ++L  L
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 10/166 (6%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
            K + L  N L           ++L+ L L               L +L  L L+GN   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC-SVPKA 224
                   P     L+ LE   +    +       + +L  L  L+++ N +    +P  
Sbjct: 94  S-----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 225 IGELRKLGILNLGSTQLNGSIPAEL----GKCENLMSVMLSCNALS 266
              L  L  ++L    +      +L       +  +S+ +S N + 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 33/151 (21%)

Query: 74  LSPSLFF-LSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
               +F  L+SL+   ++ N         V +N   L  L L + QL          L +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
           L+ L++  N+      S   +L +L TLD S N                           
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN--------------------------- 531

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
              I           K L+  +L+ N + C 
Sbjct: 532 --RIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 26/219 (11%)

Query: 74  LSPSLFFLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSL------GENQLSDFVPSQL 124
           +    F    L    L  N     + +    NL  L    L       E  L  F PS +
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 125 GVLTQL--ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182
             L  +  +   L   +   +   +   L N+  + L+G              ++ +   
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-------LEDVPKHFK 308

Query: 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
            +  S   C +      +L  LK    L L+ N    S+      L  L  L+L    L+
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKG--SISFKKVALPSLSYLDLSRNALS 363

Query: 243 GSIPA--ELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            S           +L  + LS N     +      L  L
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.0 bits (195), Expect = 1e-16
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 9/207 (4%)

Query: 74  LSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
           L+ ++  L    DLS N +       +     L+ L L  ++++         L  LE L
Sbjct: 24  LTAAMKSL----DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79

Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS-SPSCS 192
            L  N  +    S  G L +LK L+L GN +    +   +      L+ L+        +
Sbjct: 80  DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY----QTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKC 252
            +     + + L  L+ L++    L+    +++  +R +  L L  ++    +       
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 253 ENLMSVMLSCNALSGSLPEQLSELPVL 279
            ++  + L    L+      L    V 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVS 222

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 7/196 (3%)

Query: 86  DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG-E 143
            L  + +   +      +L  L+ L L +N LS    S  G L+ L+ L+L  N +    
Sbjct: 56  ILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 144 IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSK 203
           + S    L NL+TL +   E    +R          L+ L      + S+     + L  
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG----LTSLNELEIKALSLRNYQSQSLKS 170

Query: 204 LKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCN 263
           ++ +  L L  +     +      L  +  L L  T L     + L   E    +     
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 264 ALSGSLPEQLSELPVL 279
             S    E  +EL  L
Sbjct: 231 RGSVLTDESFNELLKL 246

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 14/220 (6%)

Query: 67  THSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFV-----P 121
              L+  L  S       +           S  VS L +++ +++    +  F       
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 122 SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS 181
           +   +L +++ +++ ++       S    LK+L+ LDLS N               G   
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM--VEEYLKNSACKGAWP 361

Query: 182 LLEIFSSPSCSIT--GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST 239
            L+        +       E L  LK L+ LD+S N     +P +     K+  LNL ST
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 240 QLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            +   +   + +   L  + +S N L  S    L  L  L
Sbjct: 421 GIR-VVKTCIPQ--TLEVLDVSNNNLD-SFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           D+S+N     +       ++++ L+L    +      +  +   LE L + +N+      
Sbjct: 393 DISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVV---KTCIPQTLEVLDVSNNNLD-SFS 447

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
             L     L+ L +S N+   T+ D  L P +  + +          +         +L 
Sbjct: 448 LFL---PRLQELYISRNKLK-TLPDASLFPVLLVMKI------SRNQLKSVPDGIFDRLT 497

Query: 206 FLSMLDLSENPLKCS 220
            L  + L  NP  CS
Sbjct: 498 SLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 38/187 (20%)

Query: 76  PSLFFLSSLSDLSQNPL---FGQLSRQVSNLKRLKQLSLGENQLSDF--VPSQLGVLTQL 130
            SL FL    DLS+N +   + + S        L+ L L +N L         L  L  L
Sbjct: 334 KSLEFL----DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS 190
            +L +  N+F   +P      + ++ L+LS          +++   I     LE+    +
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI------RVVKTCI--PQTLEVLDVSN 440

Query: 191 CSITGPLPEELSKLKFLSM-------------------LDLSENPLKCSVPKAIGELRKL 231
            ++       L +L+ L +                   + +S N LK         L  L
Sbjct: 441 NNLDS-FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 232 GILNLGS 238
             + L +
Sbjct: 500 QKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 12/174 (6%)

Query: 109 LSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTV 168
                   +  +PS L     +++L L  N  T     +L    NL+ L L  +      
Sbjct: 10  CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI---- 62

Query: 169 RDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC-SVPKAIG 226
               +  +    L  LE        ++         L  L  L+L  NP +   V     
Sbjct: 63  --NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 227 ELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            L  L  L +G+ +    I         +L  + +   +L     + L  +  +
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 23/203 (11%), Positives = 66/203 (32%), Gaps = 14/203 (6%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136
            L  L+ L ++    L    S+ + +++ +  L+L  ++ +  +     +L+ +  L L 
Sbjct: 146 GLTSLNEL-EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD-------------KLLPPEIGELSLL 183
             +      S L   +    +       +    +             +L   E  + +L 
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243
            +                 +   +  L + +  L   +      L K+  + + ++++  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 244 SIPAELGKCENLMSVMLSCNALS 266
              +     ++L  + LS N + 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           D+S N     L      L RL++L +  N+L     + L     L  + +  N       
Sbjct: 437 DVSNN----NLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPD 490

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG 195
               +L +L+ + L  N ++ +             +  +   S  CS +G
Sbjct: 491 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 540

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 9e-16
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 19/182 (10%)

Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161
           N  R K   + ++ L   + S       ++ L L  N  +    ++L     L+ L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 162 NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221
           N             ++  LS L      +  +      EL     +  L  + N +   V
Sbjct: 68  NVLYE-------TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114

Query: 222 PKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS----GSLPEQLSELP 277
             +    +    + L + ++      + G    +  + L  N +       L      L 
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 278 VL 279
            L
Sbjct: 173 HL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 76  PSLFFLSSLSDLSQNPLFGQLSR-QVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLS 134
                + +L   + N     +SR   S  +  K + L  N+++       G  ++++ L 
Sbjct: 96  LVGPSIETL-HAANN----NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 135 LGSNSFTG-EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSI 193
           L  N                L+ L+L  N          +  ++    L  +  S S  +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLS-SNKL 203

Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN-GSIPAELGKC 252
              +  E      ++ + L  N L   + KA+   + L   +L     + G++     K 
Sbjct: 204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 253 ENLMSVMLSCNALSGSLPEQLSELPVLI 280
           + + +V            E+   +P L 
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
               +LK L L  N+L+  +  +      +  +SL +N     I   L   +NL+  DL 
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS 208
           GN F+                +  +       +TG   EE +      
Sbjct: 246 GNGFHCGTLRDFFS---KNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 7e-15
 Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 34/168 (20%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           +     +K L++     +++  + +  L+ LE L +     T +    L  L +L  LD+
Sbjct: 62  IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
           S +                                  +  +++ L  ++ +DLS N    
Sbjct: 120 SHSA-----------------------------HDDSILTKINTLPKVNSIDLSYNG-AI 149

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267
           +    +  L +L  LN+    ++      +     L  +      + G
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 37/179 (20%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
           S  K      LG++  ++   +Q+     L  ++L + + T ++ + +    N+K L ++
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVT-DL-TGIEYAHNIKDLTIN 74

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
                               +                   +S L  L  L +    +   
Sbjct: 75  NIH-------------ATNYN------------------PISGLSNLERLRIMGKDVTSD 103

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
               +  L  L +L++  +  + SI  ++     + S+ LS N     +   L  LP L
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPEL 161

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 21/102 (20%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            +    +       +S L  L  L +  +   D + +++  L ++ ++ L  N    +I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 146 ---------------------SELGKLKNLKTLDLSGNEFNG 166
                                  +     L  L        G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 9e-15
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 19/182 (10%)

Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161
           N  R K   + ++ L   + S       ++ L L  N  +    ++L     L+ L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 162 NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221
           N             ++  LS L      +  +      EL     +  L  + N +   V
Sbjct: 68  NVLYE-------TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114

Query: 222 PKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS----GSLPEQLSELP 277
             +    +    + L + ++      + G    +  + L  N +       L      L 
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 278 VL 279
            L
Sbjct: 173 HL 174

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 28/181 (15%), Positives = 50/181 (27%), Gaps = 6/181 (3%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
               +LK L L  N+L+  +  +      +  +SL +N     I   L   +NL+  DL 
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
           GN F+                +  +       +TG   EE +              L   
Sbjct: 246 GNGFHCGTLRDFFS---KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 221 VPKAIGELRKLGI-LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
               +  L++    L  G       +  E         +          + +        
Sbjct: 303 FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAK 362

Query: 280 I 280
           I
Sbjct: 363 I 363

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 35/237 (14%), Positives = 65/237 (27%), Gaps = 28/237 (11%)

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
                 + L   DLS N L   +  +  +   +  +SL  N+L   +   L     LE  
Sbjct: 185 KGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHF 242

Query: 134 SLGSNSF-TGEIPSELGKLKNLKTLDLSGN-----------------EFNGTVRDKLLPP 175
            L  N F  G +     K + ++T+                       +     + L  P
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 176 EIGELSLLEIFSSPSCSITGPLPEELSKLKF----LSMLDLSENPLKCSVPKAIGELRKL 231
               L  L+       S  G   E L   +        +D  +   +  + +     +  
Sbjct: 303 FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAK 362

Query: 232 GILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG--SLPEQLSELPVLIFAAEKN 286
             L      L+  +         L   +             E+ S L +L    ++ 
Sbjct: 363 ITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 36/177 (20%), Positives = 58/177 (32%), Gaps = 33/177 (18%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
            +L  L  L L  N +          L+ L+ L     +        +G LK LK L+++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            N                               +  LPE  S L  L  LDLS N ++  
Sbjct: 133 HNLIQ----------------------------SFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 221 VPKAIGELRKLGI----LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL 273
               +  L ++ +    L+L    +N  I     K   L  + L  N  S ++ +  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 12/167 (7%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
            K L L  N L            +L+ L L               L +L TL L+GN   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 166 GTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK-CSVPK 223
                  L       LS L+   +   ++       +  LK L  L+++ N ++   +P+
Sbjct: 90  S------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 224 AIGELRKLGILNLGSTQLNGSIPAELGKCENL----MSVMLSCNALS 266
               L  L  L+L S ++      +L     +    +S+ LS N ++
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 36/152 (23%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 74  LSPSLFFLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQL 130
           +S +   L  L   D   + L       V  +L+ L  L +               L+ L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 131 ETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSS 188
           E L +  NSF      +   +L+NL  LDLS  +         L P     LS L++ + 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQVLNM 501

Query: 189 PSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            S  +         +L  L  + L  NP  CS
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 38/197 (19%), Positives = 61/197 (30%), Gaps = 34/197 (17%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLS--DFVPSQLGVLTQLETLSLGSNSFTGE 143
             + N      S    +L  L+ L L  N LS            T L+ L L  N     
Sbjct: 331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 144 IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSK 203
           + S    L+ L+ LD   +              + ++S   +F S               
Sbjct: 388 MSSNFLGLEQLEHLDFQHSN-------------LKQMSEFSVFLS--------------- 419

Query: 204 LKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSC 262
           L+ L  LD+S    + +       L  L +L +       +   +   +  NL  + LS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 263 NALSGSLPEQLSELPVL 279
             L    P   + L  L
Sbjct: 480 CQLEQLSPTAFNSLSSL 496

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 56/205 (27%), Positives = 77/205 (37%), Gaps = 14/205 (6%)

Query: 76  PSLFFLSSLS--DLSQNPL--FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
            S   L SL   DLS+N L   G  S+       LK L L  N +   + S    L QLE
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399

Query: 132 TLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSP 189
            L    ++       S    L+NL  LD+S                I   LS LE+    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------AFNGIFNGLSSLEVLKMA 453

Query: 190 SCSITGPLPEE-LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE 248
             S       +  ++L+ L+ LDLS+  L+   P A   L  L +LN+ S QL       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 249 LGKCENLMSVMLSCNALSGSLPEQL 273
             +  +L  + L  N    S P   
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 35/161 (21%), Positives = 46/161 (28%), Gaps = 8/161 (4%)

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179
           +P  L      + L L  N               L+ LDLS  E        +       
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQS 74

Query: 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST 239
           LS L         I        S L  L  L   E  L       IG L+ L  LN+   
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 240 QLN-GSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            +    +P       NL  + LS N +       L  L  +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 13/174 (7%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
              + L+ ++    Q           L  L+ L+  SN       SE+  L +L+ LDLS
Sbjct: 304 FGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLS 355

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK-C 219
            N  +               + L+        +   +      L+ L  LD   + LK  
Sbjct: 356 RNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL 273
           S       LR L  L++  T    +         +L  + ++ N+   +    +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 49/194 (25%), Positives = 70/194 (36%), Gaps = 33/194 (17%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           ++ ++ L   L   +     +  L + +N L+           +L TL +  N  T  +P
Sbjct: 46  NVGESGL-TTLPDCL--PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLT-SLP 97

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
                L  L                  LP     L  L IF +   S    LP     L+
Sbjct: 98  VLPPGLLELSIFSNPLTH---------LPALPSGLCKLWIFGNQLTS----LPVLPPGLQ 144

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
               L +S+N L  S+P    EL KL   N    QL  S+P      + L    +S N L
Sbjct: 145 E---LSVSDNQLA-SLPALPSELCKLWAYNN---QLT-SLPMLPSGLQEL---SVSDNQL 193

Query: 266 SGSLPEQLSELPVL 279
           + SLP   SEL  L
Sbjct: 194 A-SLPTLPSELYKL 206

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 25/206 (12%)

Query: 74  LSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
           L      L  L  +S N    QL+   +    L +L    N+L+          + L+ L
Sbjct: 176 LPMLPSGLQEL-SVSDN----QLASLPTLPSELYKLWAYNNRLTSLPAL----PSGLKEL 226

Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSI 193
            +  N  T  +P        LK L +SGN          LP     L  L ++      +
Sbjct: 227 IVSGNRLT-SLPVLPS---ELKELMVSGNRL------TSLPMLPSGLLSLSVYR---NQL 273

Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE 253
           T  LPE L  L   + ++L  NPL     +A+ E+      +    + + +  +   +  
Sbjct: 274 TR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 254 NLMSVMLSCNALSGSLPEQLSELPVL 279
            L     + + L  +   + +     
Sbjct: 333 ALHL--AAADWLVPAREGEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 21/126 (16%)

Query: 151 LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML 210
                 L++  +          LP  +   + +     P  ++T  LP    +L+    L
Sbjct: 39  NNGNAVLNVGESGL------TTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRT---L 86

Query: 211 DLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
           ++S N L  S+P     L +L I +   T L             L  + +  N L+ SLP
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLP 137

Query: 271 EQLSEL 276
                L
Sbjct: 138 VLPPGL 143

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 10/200 (5%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           DLS N +    +  +     L+ L L  N ++         L  LE L L  N  +  + 
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLS 116

Query: 146 SEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKL 204
           S     L +L  L+L GN +  T+ +  L   + +L +L + +    + T    ++ + L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGL 173

Query: 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL-GKCENLMSVMLSCN 263
            FL  L++  + L+   PK++  ++ +  L L   Q    +         ++  + L   
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 264 ALSGSLPEQLSELPVLIFAA 283
            L        SEL      +
Sbjct: 233 DLDTF---HFSELSTGETNS 249

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 30/182 (16%)

Query: 74  LSPSLFF--LSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLT 128
           L  +  F  L+ L    +     F ++ R+  + L  L++L +  + L  + P  L  + 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 129 QLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187
            +  L L        +         +++ L+L                        ++ +
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT---------------------DLDT 236

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA 247
                ++      L K      + +++  L   V K + ++  L  L     QL  S+P 
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPD 294

Query: 248 EL 249
            +
Sbjct: 295 GI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 17/153 (11%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135
            L FL  L ++  + L      +   +++ +  L L   Q    +   + V + +E L L
Sbjct: 172 GLTFLEEL-EIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 136 GSNSFTGEIPSEL--------GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187
                     SEL         K    + + ++            +   + ++S L    
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ------VMKLLNQISGLLELE 283

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
                +         +L  L  + L  NP  CS
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 3e-13
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 24/195 (12%)

Query: 77  SLFFLSSLS-----DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
            +F   + +     +L +  +      Q + L  + Q+    + +       +  L  + 
Sbjct: 13  QIFPDDAFAETIKDNLKKKSV-TDAVTQ-NELNSIDQIIANNSDIKSV--QGIQYLPNVT 68

Query: 132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC 191
            L L  N  T +I   L  LKNL  L L  N+    ++D  L   + +L  L+  S    
Sbjct: 69  KLFLNGNKLT-DI-KPLTNLKNLGWLFLDENK----IKD--LSS-LKDLKKLKSLSLEHN 119

Query: 192 SITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK 251
            I+      L  L  L  L L  N +  +    +  L KL  L+L   Q++  I   L  
Sbjct: 120 GIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAG 173

Query: 252 CENLMSVMLSCNALS 266
              L ++ LS N +S
Sbjct: 174 LTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 4e-13
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 26/196 (13%)

Query: 77  SLFFLSSLS-----DLSQNPLFGQLSR--QVSNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           S+  +  L       L+ N    +L+    ++NLK L  L L EN++ D     L  L +
Sbjct: 57  SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKK 110

Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
           L++LSL  N  + +I   L  L  L++L L  N+    + D      +  L+ L+  S  
Sbjct: 111 LKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK----ITD---ITVLSRLTKLDTLSLE 161

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
              I+      L+ L  L  L LS+N +  S  +A+  L+ L +L L S +         
Sbjct: 162 DNQISD--IVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 250 GKCENLMSVMLSCNAL 265
                  +V  +  +L
Sbjct: 218 SNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 76  PSLFFLSSLS--DLSQNPLFGQLS--RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLE 131
             L  L+ L    L  N    Q+S    ++ L +L+ L L +N +SD     L  L  L+
Sbjct: 147 TVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLD 200

Query: 132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
            L L S     +  +    L    T+  +     
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 41/222 (18%)

Query: 74  LSPSLFFLSSLS--DLSQNPLFGQLSRQVSNL-------------KRLKQLSLGENQLSD 118
           +      + S +    + +                          ++  +L L    LS 
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85

Query: 119 FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIG 178
                      LE+L    NS T E+P     LK+L   + +    +       LPP + 
Sbjct: 86  LPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD------LPPLLE 134

Query: 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGS 238
            L +       +  +   LP EL    FL ++D+  N LK  +P     L     +  G+
Sbjct: 135 YLGVS------NNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGN 182

Query: 239 TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLI 280
            QL   +P EL     L ++    N+L   LP+    L  ++
Sbjct: 183 NQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 42/193 (21%), Positives = 62/193 (32%), Gaps = 34/193 (17%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           + NL  L  +    N L             LE++  G+N        EL  L  L T+  
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE--ELPELQNLPFLTTIYA 244

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL-- 217
             N        K LP     L  L +  +        LPE    L FL + +   + L  
Sbjct: 245 DNNLL------KTLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLSE 294

Query: 218 -----------KCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
                         +         L  LN+ + +L   +PA   + E L   + S N L+
Sbjct: 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 350

Query: 267 GSLPEQLSELPVL 279
             +PE    L  L
Sbjct: 351 -EVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 38/180 (21%)

Query: 127 LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186
            T L+     S++ T E+P E   +K+      + +E+      +  PP  GE   + + 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWE-----RNAPPGNGEQREMAVS 63

Query: 187 SSPSCSITG------------PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGIL 234
               C                 LPE    L+    L  S N L   +P+    L+ L + 
Sbjct: 64  RLRDCLDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVD 119

Query: 235 NLGSTQLNGSIPA---------------ELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           N     L+   P                EL     L  + +  N+L   LP+    L  +
Sbjct: 120 NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 27/170 (15%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           + S N    ++         L++L++  N+L +  P+      +LE L    N    E+P
Sbjct: 303 NASSN----EIRSLCDLPPSLEELNVSNNKLIEL-PALPP---RLERLIASFNHLA-EVP 353

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
                  NLK L +  N           P     +  L + S  +      +PE    LK
Sbjct: 354 ELPQ---NLKQLHVEYNPLRE------FPDIPESVEDLRMNSHLA-----EVPELPQNLK 399

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENL 255
               L +  NPL+   P     +  L + +               K E+ 
Sbjct: 400 Q---LHVETNPLR-EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDD 445

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 19/121 (15%)

Query: 172 LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231
            + P     + L+     S ++T  +P E   +K  +    + +  + + P   GE R++
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 232 GI-------------LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPV 278
            +             L L +  L+ S+P      E+L   + SCN+L+  LPE    L  
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKS 115

Query: 279 L 279
           L
Sbjct: 116 L 116

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 1e-12
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 12/145 (8%)

Query: 88  SQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE 147
            ++    + S        ++ L L    L+      L  L  +  L L  N     +P  
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPA 481

Query: 148 LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG-PLPEELSKLKF 206
           L  L+ L+ L  S N       + +    +  L  L+     +  +      + L     
Sbjct: 482 LAALRCLEVLQASDNAL-----ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534

Query: 207 LSMLDLSENPLKCSVPKAIGELRKL 231
           L +L+L  N L C        L ++
Sbjct: 535 LVLLNLQGNSL-CQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 13/189 (6%)

Query: 81  LSSLSDLSQNPL--FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN 138
           L S  +L +        L   +  ++ L  L   +  L  F   +     +   L    +
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 139 SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP 198
            F  E      +  +++ L L+  +         +   + +L L+         +   LP
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLT-------VLCHLEQLLLVTHLDLSHNRLRA-LP 479

Query: 199 EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG-SIPAELGKCENLMS 257
             L+ L+ L +L  S+N L+ +V   +  L +L  L L + +L   +    L  C  L+ 
Sbjct: 480 PALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 258 VMLSCNALS 266
           + L  N+L 
Sbjct: 538 LNLQGNSLC 546

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDL 159
             L   ++L L  N +     S    L QL+ L LGS      I  E    L NL+ LDL
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 160 SGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPL--PEELSKLKFLSMLDLSENP 216
             ++         L P+    L  L       C ++  +        LK L+ LDLS+N 
Sbjct: 81  GSSKI------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 217 LKC-SVPKAIGELRKLGILNLGSTQLNGSIPAELG--KCENLMSVMLSCNALSGSLPEQL 273
           ++   +  + G+L  L  ++  S Q+      EL   + + L    L+ N+L   +    
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 274 SELP 277
            +  
Sbjct: 195 GKCM 198

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 19/210 (9%)

Query: 65  LPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQL 124
              ++  G    S+  L    DLS   +F   SR    LK LK L+L  N+++       
Sbjct: 255 PDQNTFAGLARSSVRHL----DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 125 GVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE 184
             L  L+ L+L  N       S    L  +  +DL  N     ++D+        L  L+
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKF----LEKLQ 365

Query: 185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG- 243
                  ++T      +  +  +  + LS N L       +       +++L   +L   
Sbjct: 366 TLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENL 416

Query: 244 SIPAELGKCENLMSVMLSCNALSGSLPEQL 273
            I   L +  +L  ++L+ N  S    +Q 
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQT 446

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 21/208 (10%)

Query: 77  SLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLS 134
           +  FL  L   DL  N L       +  +  +  + L  N+L       L        + 
Sbjct: 357 TFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIH 407

Query: 135 LGSNSFTG-EIPSELGKLKNLKTLDLSGNEFNGTVRDKL--LPPEIGELSL--LEIFSSP 189
           L  N     +I   L ++ +L+ L L+ N F+    D+     P + +L L    +  + 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
              +   + E LS L+ L    L+ N L    P     L  L  L+L S +L   +    
Sbjct: 468 ETELCWDVFEGLSHLQVL---YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND 523

Query: 250 GKCENLMSVMLSCNALSGSLPEQLSELP 277
               NL  + +S N L    P+    L 
Sbjct: 524 LP-ANLEILDISRNQLLAPNPDVFVSLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 20/157 (12%)

Query: 74  LSPSLFF--LSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQL-----SDFVPSQ 123
           L    F   +  L    L+QN        Q  S    L+QL LGEN L     ++     
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLL 183
              L+ L+ L L  N      P     L  L+ L L+ N     +    LP  +  L + 
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDIS 534

Query: 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
                    +  P P+    L    +LD++ N   C 
Sbjct: 535 ------RNQLLAPNPDVFVSLS---VLDITHNKFICE 562

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 16/168 (9%)

Query: 76  PSLFFLSSLSDLSQNPLFG-QLSRQVSNLKRLKQLSLGENQLSDFVPSQL-GVLTQLETL 133
           P +   ++L  LS+N L    +   +  +  L+ L L +N+ S     Q       LE L
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 134 SLGSNSFTGEIPSEL-----GKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFS 187
            LG N       +EL       L +L+ L L+ N  N       LPP +   L+ L   S
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS------LPPGVFSHLTALRGLS 510

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235
             S  +T     +L     L +LD+S N L    P     L  L I +
Sbjct: 511 LNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 35/225 (15%)

Query: 65  LPTHSLKGPLSPSL--FFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPS 122
           +  H L+     +L  F L++ S  S+  +             L+ L +  N  +     
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT----- 217

Query: 123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE--------FNGTVRDKL-- 172
                  ++     SN+ +      L    ++       +         F G  R  +  
Sbjct: 218 -------VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 173 ----------LPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221
                     L   +   L  L++ +     I     E    L  L +L+LS N L    
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 222 PKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
                 L K+  ++L    +           E L ++ L  NAL+
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 12/211 (5%)

Query: 74  LSPSLF-FLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           L+   F     L   +L++N +   +     +NL  L+ L L  N+L          L+ 
Sbjct: 47  LNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105

Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
           L  L +  N     +      L NLK+L++  N+    +  +        L+ LE  +  
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG----LNSLEQLTLE 160

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
            C++T    E LS L  L +L L    +      +   L +L +L +       ++    
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 250 GKCENLMSVMLSCNALSGSLPEQ-LSELPVL 279
               NL S+ ++   L+ ++P   +  L  L
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 7e-12
 Identities = 45/177 (25%), Positives = 62/177 (35%), Gaps = 9/177 (5%)

Query: 105 RLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164
             + L LG+N++      +      LE L L  N  +   P     L NL+TL L  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 165 NGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK 223
                 KL+P  +   LS L         I   L      L  L  L++ +N L     +
Sbjct: 93  ------KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 224 AIGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           A   L  L  L L    L  SIP E L     L+ + L    ++         L  L
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 37/205 (18%)

Query: 74  LSPSLFF-LSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           +S   F  L+SL    L +  L   +  +  S+L  L  L L    ++         L +
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
           L+ L +    +   +        NL +L ++            +P               
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL------TAVPYLA------------ 243

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE- 248
                      +  L +L  L+LS NP+       + EL +L  + L   QL   +    
Sbjct: 244 -----------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYA 291

Query: 249 LGKCENLMSVMLSCNALSGSLPEQL 273
                 L  + +S N L+ +L E +
Sbjct: 292 FRGLNYLRVLNVSGNQLT-TLEESV 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 74  LSPSLF-FLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQL 130
           +    F  L  L   ++S  P    ++        L  LS+    L+      +  L  L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSP 189
             L+L  N  +    S L +L  L+ + L G +        ++ P     L+ L + +  
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL------AVVEPYAFRGLNYLRVLNVS 304

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKC 219
              +T         +  L  L L  NPL C
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 10/173 (5%)

Query: 74  LSPSLFF-LSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQL 130
           +       L  L    L    +          L RLK L +      D +         L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 131 ETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
            +LS+   + T  +P   +  L  L+ L+LS N  + T+   +L   +  L  +++    
Sbjct: 227 TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHE-LLRLQEIQLVGGQ 283

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
              +    P     L +L +L++S N L          +  L  L L S  L 
Sbjct: 284 LAVVE---PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 11/166 (6%)

Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT-GEIPSE-LGKLKNLKTLDLS 160
            K L++L + EN+++    S    L Q+  + LG+N      I +     +K L  + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
                 T   + LPP + EL L          IT      L  L  L+ L LS N +   
Sbjct: 180 DTNI--TTIPQGLPPSLTELHL------DGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
              ++     L  L+L + +L   +P  L   + +  V L  N +S
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 26/140 (18%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
             L  L +L L  N +S      L     L  L L +N    ++P  L   K ++ + L 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            N  +    +   PP                          +K    S + L  NP++  
Sbjct: 272 NNNISAIGSNDFCPPGY-----------------------NTKKASYSGVSLFSNPVQYW 308

Query: 221 V--PKAIGELRKLGILNLGS 238
              P     +     + LG+
Sbjct: 309 EIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 13/176 (7%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
              L L  N++++        L  L TL L +N  +   P     L  L+ L LS N+  
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL- 112

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV--PK 223
                + +P  + EL +          IT       + L  + +++L  NPLK S     
Sbjct: 113 -KELPEKMPKTLQELRV------HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 224 AIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           A   ++KL  + +  T +  +IP  L    +L  + L  N ++      L  L  L
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 218

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 74  LSPSLFF-LSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLS-----DFVPSQLG 125
           +          L    L+ N L  ++   +++ K ++ + L  N +S     DF P    
Sbjct: 231 VDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 126 V-LTQLETLSLGSNSFT-GEIPSEL-GKLKNLKTLDLSGN 162
                   +SL SN     EI       +     + L   
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 16/176 (9%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
           L+ +   +  L   VP    +      L L +N  T     +   LKNL TL L  N+ +
Sbjct: 33  LRVVQCSDLGLEK-VPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
             +      P    L  LE        +   LPE++   K L  L + EN +        
Sbjct: 90  -KISPGAFAP----LVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVF 141

Query: 226 GELRKLGILNLGSTQL-NGSIPAE-LGKCENLMSVMLSCNALSG---SLPEQLSEL 276
             L ++ ++ LG+  L +  I        + L  + ++   ++     LP  L+EL
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 16/206 (7%)

Query: 74  LSPSLF-FLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           +  + F  L  L    LS+N +   +     + L  L  L L +N+L+         L++
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137

Query: 130 LETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSS 188
           L+ L L +N     IPS    ++ +L+ LDL   +    + +         LS L   + 
Sbjct: 138 LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF----EGLSNLRYLNL 192

Query: 189 PSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE 248
             C++   +P  L+ L  L  LDLS N L    P +   L  L  L +  +Q+   I   
Sbjct: 193 AMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERN 249

Query: 249 -LGKCENLMSVMLSCNALSGSLPEQL 273
                ++L+ + L+ N L+  LP  L
Sbjct: 250 AFDNLQSLVEINLAHNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 11/153 (7%)

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLET 132
           P+L  L  L   DLS N L   +       L  L++L + ++Q+     +    L  L  
Sbjct: 201 PNLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 133 LSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192
           ++L  N+ T         L +L+ + L  N +N       L   I +++         C+
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCN 319

Query: 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                P  L         +L +N   C  P  +
Sbjct: 320 ----TPPNLKGRYI---GELDQNYFTCYAPVIV 345

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 12/178 (6%)

Query: 105 RLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164
           +  ++      L   VP   G+ T    L+L  N       +    L++L+ L LS N  
Sbjct: 44  QFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA 224
             T+           L+ L         +T         L  L  L L  NP++     A
Sbjct: 101 R-TIEIGAFNG----LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155

Query: 225 IGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPE--QLSELPVL 279
              +  L  L+LG  +    I         NL  + L+   L   +P    L +L  L
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDEL 212

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 20/194 (10%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            LS N L       +S +  L   ++  N LS      L +   +E L    NS    + 
Sbjct: 171 QLSSNRL---THVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 221

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
             +     L  L L  N              +     L         +   +     K++
Sbjct: 222 GPV--NVELTILKLQHNNLTD-------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
            L  L +S N L  ++      +  L +L+L    L   +     + + L ++ L  N++
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

Query: 266 SGSLPEQLSELPVL 279
                     L  L
Sbjct: 331 VTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 16/178 (8%)

Query: 74  LSPSLFF-LSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLET 132
           +   +   L+ L  L  N L    +  + N   L ++ L  N+L   +      + +LE 
Sbjct: 220 VRGPVNVELTIL-KLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 133 LSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192
           L + +N     +      +  LK LDLS N          +     +   LE       S
Sbjct: 277 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL------LHVERNQPQFDRLENLYLDHNS 329

Query: 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELG 250
           I   L         L  L LS N   C+  +A+   R +    +     +  I  +L 
Sbjct: 330 IV-TLKLST--HHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 17/210 (8%)

Query: 73  PLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQL 130
                   L++        + +    +  + + ++++ L+L + Q+ +           +
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 95

Query: 131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSP 189
           + L +G N+     P     +  L  L L  N+         LP  I      L   S  
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPKLTTLSMS 149

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
           + ++     +       L  L LS N L   V   +  +  L   N+    L+      L
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TL 201

Query: 250 GKCENLMSVMLSCNALSGSLPEQLSELPVL 279
                +  +  S N+++        EL +L
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVELTIL 231

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 22/176 (12%), Positives = 56/176 (31%), Gaps = 9/176 (5%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
              + +       +   +   L   + ++  +++      + L   + ++ L+L+  +  
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI- 81

Query: 166 GTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA 224
                + +          ++       +I    P     +  L++L L  N L       
Sbjct: 82  -----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 225 IGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
                KL  L++ +  L   I  +      +L ++ LS N L+      +  L   
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)

Query: 119 FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI- 177
            + S L        + +   +       E   L N K +    +        + LP  + 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM------RKLPAALL 65

Query: 178 GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG 237
                +E+ +     I        +    +  L +  N ++   P     +  L +L L 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 238 STQLNGSIPAEL-GKCENLMSVMLSCNALSGSLPEQLSELPVL 279
              L+ S+P  +      L ++ +S N L     +       L
Sbjct: 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 14/200 (7%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135
            L  L  L  L +N +  Q+     + L  L  L L +N L+         L++L  L L
Sbjct: 97  HLHHLEVL-QLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 136 GSNSFTGEIPSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT 194
            +N     IPS    ++ +L  LDL   +    + +         L  L+  +   C+I 
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF----EGLFNLKYLNLGMCNIK 209

Query: 195 GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE-LGKCE 253
             +P  L+ L  L  L++S N      P +   L  L  L + ++Q++  I         
Sbjct: 210 D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLA 266

Query: 254 NLMSVMLSCNALSGSLPEQL 273
           +L+ + L+ N LS SLP  L
Sbjct: 267 SLVELNLAHNNLS-SLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 76  PSLFFLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLET 132
           P+L  L  L   ++S N    ++       L  LK+L +  +Q+S    +    L  L  
Sbjct: 212 PNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 133 LSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192
           L+L  N+ +         L+ L  L L  N +N       L   + E           C 
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCH 330

Query: 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                P  +        +++ +   +CS P  +
Sbjct: 331 ----APMHMRGRYL---VEVDQASFQCSAPFIM 356

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 35/178 (19%), Positives = 55/178 (30%), Gaps = 12/178 (6%)

Query: 105 RLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164
           +  ++      LS  VP   G+ +    L+L  N+           L +L+ L L  N  
Sbjct: 55  QFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA 224
              +           L+ L         +T         L  L  L L  NP++     A
Sbjct: 112 R-QIEVGAFNG----LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 225 IGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPE--QLSELPVL 279
              +  L  L+LG  +    I         NL  + L    +   +P    L  L  L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEEL 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            L  N +    +      + L  L L  N L+    +    L  LE L L  N+    + 
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 146 SE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSK 203
                 L  L TL L           + L P +   L+ L+       ++     +    
Sbjct: 98  PATFHGLGRLHTLHLDRCGL------QELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 204 LKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSC 262
           L  L+ L L  N +     +A   L  L  L L   ++   +          LM++ L  
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA 210

Query: 263 NALSGSLPEQL 273
           N LS +LP + 
Sbjct: 211 NNLS-ALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 43/171 (25%), Positives = 58/171 (33%), Gaps = 13/171 (7%)

Query: 74  LSPSLFF-LSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           +  + F  L+ L   DLS N     +       L RL  L L    L +  P     L  
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 130 LETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFS 187
           L+ L L  N+    +P +    L NL  L L GN  +       +P      L  L+   
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLHSLDRLL 183

Query: 188 SPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGS 238
                +    P     L  L  L L  N L     +A+  LR L  L L  
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 74  LSPSLF-FLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
           + P+ F  L  L    L +  L  +L   +   L  L+ L L +N L          L  
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSS 188
           L  L L  N  +         L +L  L L  N          + P    +L  L     
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV------AHVHPHAFRDLGRLMTLYL 208

Query: 189 PSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            + +++    E L+ L+ L  L L++NP  C 
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 31/167 (18%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
            +++ L  N++S    +       L  L L SN       +    L  L+ LDLS N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-- 91

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
              + + + P                            L  L  L L    L+   P   
Sbjct: 92  ---QLRSVDPAT-----------------------FHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 226 GELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPE 271
             L  L  L L    L  ++P +      NL  + L  N +S S+PE
Sbjct: 126 RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 12/151 (7%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
            N   L ++ L  N+L   +      + +LE L + +N     +      +  LK LDLS
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            N          +     +   LE       SI   L   LS    L  L LS N   C+
Sbjct: 310 HNHL------LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGK 251
             +A+   R +    +     +  I  +L  
Sbjct: 361 SLRAL--FRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 20/194 (10%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            LS N L       +S +  L   ++  N LS      L +   +E L    NS    + 
Sbjct: 177 QLSSNRL---THVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 227

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
             +     L  L L  N              +     L         +   +     K++
Sbjct: 228 GPV--NVELTILKLQHNNLTD-------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
            L  L +S N L  ++      +  L +L+L    L   +     + + L ++ L  N++
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

Query: 266 SGSLPEQLSELPVL 279
                     L  L
Sbjct: 337 VTLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 16/216 (7%)

Query: 65  LPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQL 124
                  G    +L     +     + +    +  + + ++++ L+L + Q+ +      
Sbjct: 37  QTQDVYFGFEDITLNNQKIV-TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 95

Query: 125 GVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLL 183
                ++ L +G N+     P     +  L  L L  N+         LP  I      L
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPKL 149

Query: 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243
              S  + ++     +       L  L LS N L   V   +  +  L   N+    L+ 
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS- 205

Query: 244 SIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
                L     +  +  S N+++        EL +L
Sbjct: 206 ----TLAIPIAVEELDASHNSINVVRGPVNVELTIL 237

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 22/176 (12%), Positives = 55/176 (31%), Gaps = 9/176 (5%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
              + +       +   +   L   + ++  +++      + L   + ++ L+L+  +  
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 166 GTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA 224
                  +          ++       +I    P     +  L++L L  N L       
Sbjct: 89  E------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 225 IGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
                KL  L++ +  L   I  +      +L ++ LS N L+      +  L   
Sbjct: 143 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)

Query: 119 FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI- 177
            + S L        + +   +       E   L N K +    +        + LP  + 
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM------RKLPAALL 71

Query: 178 GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG 237
                +E+ +     I        +    +  L +  N ++   P     +  L +L L 
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 238 STQLNGSIPAEL-GKCENLMSVMLSCNALSGSLPEQLSELPVL 279
              L+ S+P  +      L ++ +S N L     +       L
Sbjct: 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 26/207 (12%)

Query: 74  LSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
           L      L  L D+  N L   L    + L+ +   +   NQL+  +P      T LE L
Sbjct: 115 LPELPASLKHL-DVDNNQL-TMLPELPALLEYI---NADNNQLTM-LPELP---TSLEVL 165

Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL-SLLEIFSSPSCS 192
           S+ +N  T  +P       +L+ LD+S N          LP          E      C 
Sbjct: 166 SVRNNQLT-FLPELPE---SLEALDVSTNLLES------LPAVPVRNHHSEETEIFFRCR 215

Query: 193 ---ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
              IT  +PE +  L     + L +NPL   + +++ +       +      + S   + 
Sbjct: 216 ENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 250 GKCENLMSVMLSCNALSGSLPEQLSEL 276
                L   +        +    +S++
Sbjct: 275 TLHRPLADAVT--AWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 25/186 (13%)

Query: 96  LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL--GKLKN 153
           +   ++N   L Q S   N +S           + E  +L   +   E  S L    +  
Sbjct: 3   IMLPINNNFSLSQNSF-YNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQ 60

Query: 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLS 213
              L L+            LP  +     + +      ++   LPE  + L++   LD  
Sbjct: 61  FSELQLNRLNL------SSLPDNLP--PQITVLEITQNALI-SLPELPASLEY---LDAC 108

Query: 214 ENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL 273
           +N L  ++P+    L+    L++ + QL   +P      E +       N L+  LPE  
Sbjct: 109 DNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELP 159

Query: 274 SELPVL 279
           + L VL
Sbjct: 160 TSLEVL 165

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 14/193 (7%)

Query: 83  SLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
           S+  +  +      S        +   +   +            ++    L   +N  T 
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 143 EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIG---ELSLLEIFSSPSCSITGPLPE 199
            +    G L  L+TL L  N+       K L        ++  L+       S++    +
Sbjct: 339 TVFENCGHLTELETLILQMNQL------KELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 200 EL-SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSV 258
              S  K L  L++S N L  ++ + +    ++ +L+L S ++  SIP ++ K E L  +
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449

Query: 259 MLSCNALSGSLPE 271
            ++ N L  S+P+
Sbjct: 450 NVASNQLK-SVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 9/184 (4%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           ++SQN +    +  + +L +L+ L +  N++     S      +LE L L  N    +I 
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
                  NLK LDLS N F+          E G +S L+     +  +       ++ L 
Sbjct: 86  C--HPTVNLKHLDLSFNAFDALPI----CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
              +L +          +    L+     +L            +          L  + +
Sbjct: 140 ISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 266 SGSL 269
              L
Sbjct: 198 KCVL 201

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV---LTQLETLSLGSNSFTG 142
           D S N L   +     +L  L+ L L  NQL + +     +   +  L+ L +  NS + 
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 143 EIPSEL-GKLKNLKTLDLSGNEFNGTVRDKL----------------LPPEIGELSLLEI 185
           +         K+L +L++S N    T+   L                +P ++ +L  L+ 
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448

Query: 186 FSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            +  S  +         +L  L  + L  NP  CS
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
              L++ +N +S+   S +  L++L  L +  N       S     + L+ LDLS N+  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                         L  L++  +   ++  P+ +E   +  L  L LS   L+ S    I
Sbjct: 83  KISCHPT-----VNLKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 226 GELRKLGILNLGSTQLNGSIPAE 248
             L    +L +           E
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPE 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 14/163 (8%)

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-G 178
           VP    +  +   L++  N  +    S++  L  L+ L +S N          L   +  
Sbjct: 15  VPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY------LDISVFK 66

Query: 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC-SVPKAIGELRKLGILNLG 237
               LE        +          LK    LDLS N      + K  G + +L  L L 
Sbjct: 67  FNQELEYLDLSHNKLVKISCHPTVNLKH---LDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 238 STQLNGSIPAELGKCENL-MSVMLSCNALSGSLPEQLSELPVL 279
           +T L  S    +       + ++L         PE L +    
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 42/205 (20%), Positives = 70/205 (34%), Gaps = 13/205 (6%)

Query: 68  HSLKGPLSPSLFFLSSLS--DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP-SQL 124
            S KG  S S F  +SL   DLS N +   +S     L++L+ L    + L      S  
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 125 GVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLL 183
             L  L  L +          +     L +L+ L ++GN F       +       L  L
Sbjct: 123 LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----LRNL 177

Query: 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243
                  C +    P   + L  L +L++S N            L  L +L+     +  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 244 SIPAEL--GKCENLMSVMLSCNALS 266
           +   +       +L  + L+ N  +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 40/172 (23%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN--SFTGEIPSELGKLKNLKTLDLSGNE 163
             +L L  N+L          LTQL  LSL SN  SF G          +LK LDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSENPLKCSVP 222
                    +      L  LE       ++       +   L+ L  LD+S    + +  
Sbjct: 90  V------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 223 KAIGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVMLSCNALSGSLPEQL 273
                L  L +L +       +   +   +  NL  + LS   L   L    
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 41/199 (20%), Positives = 63/199 (31%), Gaps = 12/199 (6%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF--VPSQLGVLTQLETLSLGSNSFTGE 143
           +L  N L          L +L +LSL  N LS            T L+ L L  N     
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 92

Query: 144 IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELS 202
           + S    L+ L+ LD   +        ++    +   L  L                  +
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 203 KLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLGSTQLNGSIPAELGKC-ENLMSVML 260
            L  L +L ++ N  + +  P    ELR L  L+L   QL   +         +L  + +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 206

Query: 261 SCNALSGSLPEQLSELPVL 279
           S N            L  L
Sbjct: 207 SHNNFFSLDTFPYKCLNSL 225

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 8/168 (4%)

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
            ++      L+  VP+  G+ +    L L SN           KL  L  L LS N  + 
Sbjct: 10  TEIRCNSKGLTS-VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS- 65

Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK-AI 225
                         + L+        +   +      L+ L  LD   + LK        
Sbjct: 66  --FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 226 GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL 273
             LR L  L++  T    +         +L  + ++ N+   +    +
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 34/152 (22%)

Query: 74  LSPSLFF-LSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQ 129
               +F  LSSL    ++ N         + + L+ L  L L + QL    P+    L+ 
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
           L+ L++  N+F          L +L+ LD S N                           
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN--------------------------- 233

Query: 190 SCSITGPLPEELSKL-KFLSMLDLSENPLKCS 220
              I     +EL      L+ L+L++N   C+
Sbjct: 234 --HIMTSKKQELQHFPSSLAFLNLTQNDFACT 263

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
            ++L  +  LS     ++      +  L  L  L L  N  T    + L  L  +  L+L
Sbjct: 37  QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELEL 92

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
           SGN              I  L  ++     S  IT      L+ L  L +L L  N +  
Sbjct: 93  SGNPLKN-------VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQI-- 141

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
           +    +  L  L  L++G+ Q++  +   L     L ++    N +S
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           ++ L+ +K L L   Q++D  P  L  L+ L+ L L  N  T  I S L  L NL+ L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSI 158

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
              + +           +  LS L    +    I+      L+ L  L  + L  N +  
Sbjct: 159 GNAQVSDL-------TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQI-- 207

Query: 220 SVPKAIGELRKLGILNLGSTQL 241
           S    +     L I+ L +  +
Sbjct: 208 SDVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           ++ L  L+ LS+G  Q+SD  P  L  L++L TL    N  +    S L  L NL  + L
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHL 202

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML 210
             N+ +           +   S L I +  + +IT       + L   +++
Sbjct: 203 KNNQISDV-------SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 18/181 (9%)

Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT-GEIPSELGKLKNLKTLDLSG 161
              L +L + +N++          L  +  + +G N                L  L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 162 NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221
            +   T   K LP  + EL L          I     E+L +   L  L L  N ++   
Sbjct: 182 AKL--TGIPKDLPETLNELHL------DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233

Query: 222 PKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
             ++  L  L  L+L + +L+  +PA L   + L  V L  N         ++++ V  F
Sbjct: 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN--------NITKVGVNDF 284

Query: 282 A 282
            
Sbjct: 285 C 285

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
               +L +L LG NQ+       L  L  L  L L +N  +  +P+ L  LK L+ + L 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 161 GNEF----NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSEN 215
            N                 +    + + +F++P        P     +     +     
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ-PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 46/200 (23%), Positives = 73/200 (36%), Gaps = 29/200 (14%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
             L+ L  L L  N++S         L +L+ L +  N    EIP  L    +L  L + 
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIH 131

Query: 161 GNE--------FNGT------------VRDKLLPPEIGELSLLEIFSSPSCSITGPLPEE 200
            N         F+G             + +    P   +   L         +TG +P++
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKD 190

Query: 201 LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVM 259
           L   + L+ L L  N ++    + +    KL  L LG  Q+   I    L     L  + 
Sbjct: 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELH 247

Query: 260 LSCNALSGSLPEQLSELPVL 279
           L  N LS  +P  L +L +L
Sbjct: 248 LDNNKLS-RVPAGLPDLKLL 266

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 15/175 (8%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
           L+ +   +  L   VP    +      L L +N  +     +   L++L  L L  N+ +
Sbjct: 35  LRVVQCSDLGLKA-VPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
             + +K   P    L  L+        +   +P  L     L  L + +N ++       
Sbjct: 92  -KIHEKAFSP----LRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVF 143

Query: 226 GELRKLGILNLGSTQL-NGSIPAELGKCENLMSVMLSCNALSG---SLPEQLSEL 276
             LR +  + +G   L N            L  + +S   L+G    LPE L+EL
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 16/213 (7%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL---TQLETL 133
           SL +L    D   +         +     LK+L++   ++   +      +   + L+ L
Sbjct: 44  SLEYLLKRVDTEADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 134 SLGSNSFTGEIPSELGKL--KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC 191
           +L +   TG  P  L +    +L  L+L    +           +  +  L  +  + + 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 192 SITGPLPEELSKLKFLSMLDLSENPLKCS-------VPKAIGELRKLGILNLGSTQLNGS 244
           S+      ++     LS LDLS+NP            P     L+ L + N G    +G 
Sbjct: 161 SLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
             A       L  + LS N+L  +      + P
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 48/222 (21%), Positives = 72/222 (32%), Gaps = 43/222 (19%)

Query: 69  SLKGPLSPSLFFLS-------SLSDLSQNPLFGQLSR-QVSNLKRLKQLSLGENQLSDFV 120
            + G   P L   +       +L ++S       L+  Q      LK LS+ +    +F 
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 121 PSQLGVLTQLETLSLGSNSFTGEIPSE----LGKLKNLKTLDLSGNEFNGTVRDKLLPPE 176
             Q+ V   L TL L  N   GE          K   L+ L L                 
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME----------- 214

Query: 177 IGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE-LRKLGILN 235
                          + +G      +    L  LDLS N L+ +      +   +L  LN
Sbjct: 215 ---------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSG-SLPEQLSEL 276
           L  T L   +P  L     L  + LS N L     P++L ++
Sbjct: 260 LSFTGLK-QVPKGLPA--KLSVLDLSYNRLDRNPSPDELPQV 298

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 20/186 (10%)

Query: 67  THSLKGPLSPSLFFLSSLS----DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSD---- 118
           + + +      L            ++Q         QV     L  L L +N        
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 119 ---FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP 175
                P +   L  L   + G  + +G   +       L+ LDLS N            P
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA----AGAP 247

Query: 176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235
                S L   +     +        +KL     LDLS N L    P    EL ++G L+
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPKGLPAKLSV---LDLSYNRLD-RNPS-PDELPQVGNLS 302

Query: 236 LGSTQL 241
           L     
Sbjct: 303 LKGNPF 308

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 20/240 (8%)

Query: 62  WLVLPTHSLKGPLSPSLF-FLSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLS 117
           +L +   +    +  + F  LSSL    L  N    QL     + L  L+ L+L +  L 
Sbjct: 58  FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLD 116

Query: 118 DFV--PSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLP 174
             V   +    LT LE L L  N+     P+     ++    LDL+ N+      + LL 
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

Query: 175 PEIGELSLLE-----IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELR 229
            +    +LL      +       +         K   ++ LDLS N  K S+ K   +  
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 230 KLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE-------QLSELPVLIFA 282
               +       + ++ +  G          +   L  S  +       ++  L   +F+
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 15/159 (9%)

Query: 65  LPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQ 123
               + KG  +  +       DLS++ +F  L + V S+   L+QL+L +N+++    + 
Sbjct: 264 PDNFTFKGLEASGVKTC----DLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

Query: 124 LGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELS 181
              LT L  L+L  N     I S +   L  L+ LDLS N        + L  +    L 
Sbjct: 319 FWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI------RALGDQSFLGLP 371

Query: 182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
            L+  +  +  +         +L  L  + L  NP  CS
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 15/184 (8%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEF 164
           +  + L  N +++   +    L  L+ L +   +    I +     L +L  L L  N+F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 165 NGTVRDKLLPPEI-GELSLLEIFSSPSCSITG-PLPEEL-SKLKFLSMLDLSENPLKCSV 221
                   L       L+ LE+ +   C++ G  L       L  L ML L +N +K   
Sbjct: 92  ------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 222 PKAI-GELRKLGILNLGSTQLNGSIPAEL---GKCENLMSVMLSCNALSGSLPEQLSELP 277
           P +    +R+  +L+L   ++  SI  E     + ++   + LS   L       L    
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 278 VLIF 281
               
Sbjct: 205 CGNP 208

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 32/203 (15%)

Query: 101 SNLKRLKQLSLGENQLS-----DFVPSQLGVLTQLE-----TLSLGSNSFTGEIPSELGK 150
            N++R   L L  N++      D +  Q    T L         +       E      K
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 151 LKNLKTLDLSGNEFN----GTVRDKLLPPEIGELSL----LEIFSSPSCSITGPLPEELS 202
             ++ TLDLSGN F         D +   +I  L L        S    +   P      
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 203 KLKF--LSMLDLSENPLKCSVPKAI-GELRKLGILNLGSTQLNGSIPAE-LGKCENLMSV 258
            L+   +   DLS++ +  ++ K++      L  L L   ++N  I         +L+ +
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 259 MLSCNALSGSLPEQLSELPVLIF 281
            LS N         L  +   +F
Sbjct: 329 NLSQN--------FLGSIDSRMF 343

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
               N L    +  V+ L +L  L+   N+L+    SQ      L  L+   N+ T EI 
Sbjct: 91  ACDSNKL---TNLDVTPLTKLTYLNCDTNKLTKLDVSQ---NPLLTYLNCARNTLT-EID 143

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
             +     L  LD   N+       K+   ++   + L         IT     ++S+ K
Sbjct: 144 --VSHNTQLTELDCHLNK-------KITKLDVTPQTQLTTLDCSFNKITE---LDVSQNK 191

Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
            L+ L+   N +   +   + +  +L  L+  S +L   I   +     L     S N L
Sbjct: 192 LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL 245

Query: 266 SGSLPEQLSELPVL 279
           +      LS+L  L
Sbjct: 246 TELDVSTLSKLTTL 259

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 21/180 (11%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
              L  L  L    + ++D   + +  LT L  L   SN+ T  +   L +  NL  L  
Sbjct: 38  EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLAC 92

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
             N        KL   ++  L+ L   +  +  +T     ++S+   L+ L+ + N L  
Sbjct: 93  DSN--------KLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT- 140

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            +   +    +L  L+    +    +   +     L ++  S N ++     Q   L  L
Sbjct: 141 EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 22/167 (13%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           +  L  L +L    N ++    SQ    T L  L+  SN  T  +   +  L  L  L+ 
Sbjct: 60  IEKLTGLTKLICTSNNITTLDLSQ---NTNLTYLACDSNKLT-NLD--VTPLTKLTYLNC 113

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
             N        KL   ++ +  LL   +    ++T     ++S    L+ LD   N    
Sbjct: 114 DTN--------KLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT 162

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
            +   +    +L  L+    ++      ++ + + L  +    N ++
Sbjct: 163 KLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           VS+  +L +L    N+    +   +   TQL TL    N  T     ++ + K L  L+ 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
             N         +   ++ +   L      S  +T     +++ L  L+  D S NPL  
Sbjct: 199 DTN--------NITKLDLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT- 246

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            +   +  L KL  L+   T L      E+    N   +              ++    L
Sbjct: 247 ELD--VSTLSKLTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
                    ++          L  L +L   ++S T    + + KL  L  L  + N   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN--- 74

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                 +   ++ + + L   +  S  +T     +++ L  L+ L+   N L   +   +
Sbjct: 75  -----NITTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLD--V 123

Query: 226 GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
            +   L  LN     L   I   +     L  +    N     L 
Sbjct: 124 SQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 19/156 (12%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           VS L +L  L   +  L +   +     TQL            E+  ++     L  LD 
Sbjct: 250 VSTLSKLTTLHCIQTDLLEIDLTH---NTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDC 304

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
                       +   ++ +   L      +  +T  L   +S    L  L      ++ 
Sbjct: 305 QAA--------GITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ- 352

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENL 255
               ++G++  L        Q   ++P E     +L
Sbjct: 353 DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           +S   +L  L L   +L++   S     T+L++LS  +     +    +GK+  L     
Sbjct: 314 LSQNPKLVYLYLNNTELTELDVSH---NTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFE 368

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPS 190
           +  +         +P E    + L I  SP 
Sbjct: 369 AEGQT------ITMPKETLTNNSLTIAVSPD 393

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 39/167 (23%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
            + L  + Q+    + +       +  L  +  L L  N  T +I   L  LKNL  L L
Sbjct: 42  QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFL 97

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
             N+             + +L  L+  S     I+      L  L  L  L L  N +  
Sbjct: 98  DENKVKDLS-------SLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITD 148

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
                +  L KL  L+L   Q++  I   L     L ++ LS N +S
Sbjct: 149 --ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 17/180 (9%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           ++NLK L  L L EN++ D     L  L +L++LSL  N  + +I   L  L  L++L L
Sbjct: 86  LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYL 141

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
             N+             +  L+ L+  S     I+      L+ L  L  L LS+N +  
Sbjct: 142 GNNKITD-------ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHI-- 190

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
           S  +A+  L+ L +L L S +                +V  +  +L    PE +S+    
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDY 248

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 11/167 (6%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
              L L EN L  F  + L   T+L  L+L     T ++  + G L  L TLDLS N+  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL- 89

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                + LP     L  L +       +T      L  L  L  L L  N LK   P  +
Sbjct: 90  -----QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 226 GELRKLGILNLGSTQLNGSIPAEL-GKCENLMSVMLSCNALSGSLPE 271
               KL  L+L +  L   +PA L    ENL +++L  N+L  ++P+
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 17/140 (12%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           DLS N L   L      L  L  L +  N+L+      L  L +L+ L L  N     +P
Sbjct: 83  DLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP 140

Query: 146 SEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEI----GELSLLEIFSSPSCSITGPLPEE 200
             L      L+ L L+ N          LP  +      L  L +  +   +I    P+ 
Sbjct: 141 PGLLTPTPKLEKLSLANNNL------TELPAGLLNGLENLDTLLLQENSLYTI----PKG 190

Query: 201 LSKLKFLSMLDLSENPLKCS 220
                 L    L  NP  C+
Sbjct: 191 FFGSHLLPFAFLHGNPWLCN 210

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 38/172 (22%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
           S +    +++  +  L+  +P    +      L L  N       + L     L  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
                             EL+ L++                  L  L  LDLS N L+ S
Sbjct: 64  RA----------------ELTKLQVD---------------GTLPVLGTLDLSHNQLQ-S 91

Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAEL-GKCENLMSVMLSCNALSGSLPE 271
           +P     L  L +L++   +L  S+P         L  + L  N L  +LP 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPP 141

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 14/192 (7%)

Query: 84  LSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGE 143
           +  +             S    +    L  +             +    L+   N FT  
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 144 IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT----GPLPE 199
           +      LK L+TL L  N        K           +    +   S+          
Sbjct: 369 VFQGCSTLKRLQTLILQRNGL------KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 200 ELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM 259
             +  + + +L+LS N L  SV + +    K+ +L+L + ++  SIP ++   + L  + 
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479

Query: 260 LSCNALSGSLPE 271
           ++ N L  S+P+
Sbjct: 480 VASNQLK-SVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 11/197 (5%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            +++     + +   + LK L    +          +   V  ++    L  +       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT--GPLPEELSK 203
                  +   L+ + N F        +      L  L+        +     +      
Sbjct: 347 VCPPSPSSFTFLNFTQNVF-----TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 204 LKFLSMLDLSENPLKCSVPKAI-GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC 262
           +  L  LD+S N L              + +LNL S  L GS+   L     +  + L  
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459

Query: 263 NALSGSLPEQLSELPVL 279
           N +  S+P+ ++ L  L
Sbjct: 460 NRIM-SIPKDVTHLQAL 475

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 11/143 (7%)

Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP--SELGKLKNLKTLDL 159
             + L+ L +  N+L + +      +  L  L L  N F   +P   E G L  L  L L
Sbjct: 98  FNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGL 153

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
           S  +F      +L    +  L L  I              E  ++   ++L L  +P   
Sbjct: 154 SAAKFR-----QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 220 SVPKAIGELRKLGILNLGSTQLN 242
              +    +  LG L L + +LN
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLN 231

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 36/165 (21%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEF 164
            K LSL +N +S+     +  L++L  L L  N     +   +    ++L+ LD+S N  
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC-SVPK 223
                 + +                              +  L  LDLS N      V K
Sbjct: 113 ------QNISC--------------------------CPMASLRHLDLSFNDFDVLPVCK 140

Query: 224 AIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268
             G L KL  L L + +    +        +L  ++L   +    
Sbjct: 141 EFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIK 184

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 33/139 (23%)

Query: 83  SLSDLSQNPL-FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT 141
              D+S N L      R  +  + +  L+L  N L+  V   L    +++ L L +N   
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM 463

Query: 142 GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL 201
             IP ++  L+ L+ L+++ N+       K +P  +                        
Sbjct: 464 -SIPKDVTHLQALQELNVASNQL------KSVPDGV-----------------------F 493

Query: 202 SKLKFLSMLDLSENPLKCS 220
            +L  L  + L +NP  C+
Sbjct: 494 DRLTSLQYIWLHDNPWDCT 512

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 74  LSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETL 133
           L P +  L    DL  N +   + + V++L+ L++L++  NQL          LT L+ +
Sbjct: 448 LPPKVKVL----DLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502

Query: 134 SLGSNSF 140
            L  N +
Sbjct: 503 WLHDNPW 509

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 18/194 (9%)

Query: 86  DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEI 144
           DLS N L   L   + S+L+ L+ L L  N +     +    + QL+ L L  N  +   
Sbjct: 94  DLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 145 PSE----LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP---SCSITGPL 197
           P E      KL  L  LDLS N+        L        + L + ++P    C +   L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLY-QL 210

Query: 198 PEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMS 257
                  + LS +   +  L C   K +  +  L   N    + + +  A LG      +
Sbjct: 211 FSHWQYRQ-LSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKES-AWEAHLG-----DT 263

Query: 258 VMLSCNALSGSLPE 271
           + + C+     + +
Sbjct: 264 LTIRCDTKQQGMTK 277

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 86  DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEI 144
           DLS N L    +    + L  L  L L  N L+         +  L  L L SN     +
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TL 103

Query: 145 PSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEE-- 200
                  L+ L+ L L  N         ++      +++ L+        I+   P E  
Sbjct: 104 DEFLFSDLQALEVLLLYNNHI------VVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 201 --LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNL 236
              +KL  L +LDLS N LK      + +L       L
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
              L    + +LG+  ++D V      L+ ++  +  +++    + + +    NLK L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
           S N+    + D  L P + +L+ LE  S     +        + L     L L  N L  
Sbjct: 71  SHNQ----ISD--LSP-LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNEL-- 118

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
               ++  L+ L IL++ + +L  SI   LG    L  + L  N ++
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           + +L +L++LS+  N+L +           L  L L +N         L  LKNL+ L +
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRD--TDSLIHLKNLEILSI 135

Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
             N+             +G LS LE+       IT      L++LK ++ +DL+      
Sbjct: 136 RNNKLKSI-------VMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKC-- 184

Query: 220 SVPKAIGELRKLGILNLGSTQLNGSI 245
            V + +    +L I N      +G  
Sbjct: 185 -VNEPVKYQPELYITNT-VKDPDGRW 208

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 13/190 (6%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136
           +L  L  +     N L         NL  L+ L +    +            Q   L + 
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 137 SNSFTGEIPSEL--GKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSI 193
            N     I      G       L L+ N        + +         L E+  S + ++
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGI------QEIHNSAFNGTQLDELNLSDNNNL 190

Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE 253
                +         +LD+S   +       +  L+KL   +  +      +P  L K  
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT-LEKLV 246

Query: 254 NLMSVMLSCN 263
            LM   L+  
Sbjct: 247 ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 13/200 (6%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQ-LGVLTQLETLSL-GSNSFTGE 143
                 L        S    L+++ + +N + + + +     L +L  + +  +N+    
Sbjct: 36  RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95

Query: 144 IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPE--IGELSLLEIFSSPSCSITGPLPEEL 201
            P     L NL+ L +S          K LP    I  L  + +    + +I        
Sbjct: 96  NPEAFQNLPNLQYLLISNTGI------KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 202 SKLKFLSM-LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE-LGKCENLMSVM 259
             L F S+ L L++N ++     A    +   +    +  L   +P +        + + 
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD 208

Query: 260 LSCNALSGSLPEQLSELPVL 279
           +S   +       L  L  L
Sbjct: 209 ISRTRIHSLPSYGLENLKKL 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 17/181 (9%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEF 164
             +L     +L             LE + +  N     I ++    L  L  + +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN- 90

Query: 165 NGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK 223
                   + PE    L  L+     +  I               +LD+ +N    ++ +
Sbjct: 91  ----NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 224 AI--GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
               G   +  IL L    +   I         L  + LS N         L ELP  +F
Sbjct: 147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN-------NNLEELPNDVF 198

Query: 282 A 282
            
Sbjct: 199 H 199

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 42/205 (20%)

Query: 96  LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL-----TQLETLSLGSNSFTGE----IPS 146
           +S  +     L +L+L  N+L D     +         +++ LSL +   TG     + S
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 147 ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT------------ 194
            L  L  L+ L LS N             + G   L E    P C +             
Sbjct: 108 TLRTLPTLQELHLSDNLLG----------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 195 --GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRK-----LGILNLGSTQLN----G 243
              PL   L        L +S N +  +  + + +  K     L  L L S  +      
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 244 SIPAELGKCENLMSVMLSCNALSGS 268
            +   +    +L  + L  N L   
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDV 242

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 38/198 (19%)

Query: 106 LKQLSLGENQLSDFVPSQLG-VLTQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLS 160
           ++ L +   +LSD   ++L  +L Q + + L     T      I S L     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT--------------GPLPEELSKLKF 206
            NE            ++G   +L+   +PSC I               G L   L  L  
Sbjct: 65  SNELG----------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 207 LSMLDLSENPLKCSVPKAIGELR-----KLGILNLGSTQLN----GSIPAELGKCENLMS 257
           L  L LS+N L  +  + + E       +L  L L    L+      + + L    +   
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 258 VMLSCNALSGSLPEQLSE 275
           + +S N ++ +    L +
Sbjct: 175 LTVSNNDINEAGVRVLCQ 192

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 40/205 (19%), Positives = 62/205 (30%), Gaps = 42/205 (20%)

Query: 96  LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL-----TQLETLSLGSNSFTGE----IPS 146
           LS  +  L  L++L L +N L D     L         +LE L L   S +      + S
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 147 ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT------------ 194
            L    + K L +S N+ N            G   L +      C +             
Sbjct: 165 VLRAKPDFKELTVSNNDINEA----------GVRVLCQGLKDSPCQLEALKLESCGVTSD 214

Query: 195 --GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE-----LRKLGILNLGSTQLN----G 243
               L   ++    L  L L  N L       +         +L  L +    +     G
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 244 SIPAELGKCENLMSVMLSCNALSGS 268
            +   L   E+L  + L+ N L   
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDE 299

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 86  DLSQNPL----FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG-----VLTQLETLSLG 136
            + +  +     G L R +   + LK+LSL  N+L D     L         QLE+L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 137 SNSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192
           S SFT        S L + + L  L +S N        +L        S+L +     C 
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 193 IT----GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRK-----LGILNLGSTQLN 242
           ++      L   L     L  LDLS N L  +    + E  +     L  L L     +
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 33/176 (18%)

Query: 77  SLFFLSSLSDLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135
           SL  LS+L  L+ NP+   L+    S L  L++L   E  L+      +G L  L+ L++
Sbjct: 74  SLSHLSTL-ILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 136 GSNSFTG-EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT 194
             N     ++P     L NL+ LDLS N+       + +                     
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------QSIYC--------TDLRV------ 171

Query: 195 GPLPEELSKLKFLSM-LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
                 L ++  L++ LDLS NP+   +     +  +L  L L + QL  S+P  +
Sbjct: 172 ------LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 49/205 (23%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 86  DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEI 144
           DLS NPL   L      +   L+ L L   ++          L+ L TL L  N     +
Sbjct: 34  DLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 91

Query: 145 PSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSITG-PLPEEL 201
                  L +L+ L               L     G L  L+  +     I    LPE  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNL------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGI----LNLGSTQLNGSIPAELGKCENLMS 257
           S L  L  LDLS N ++      +  L ++ +    L+L    +N  I     K   L  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 258 VMLSCNALSGSLPEQLSELPVLIFA 282
           + L  N        QL  +P  IF 
Sbjct: 205 LALDTN--------QLKSVPDGIFD 221

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 24/185 (12%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEF 164
            K L L  N L            +L+ L L        I       L +L TL L+GN  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 165 NGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL-KCSVP 222
                 + L       LS L+   +   ++       +  LK L  L+++ N +    +P
Sbjct: 89  ------QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 223 KAIGELRKLGILNLGSTQLNGSIPAE-LGKCENL----MSVMLSCNALSGSLPEQLSELP 277
           +    L  L  L+L S ++  SI    L     +    +S+ LS N         ++ + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN--------PMNFIQ 193

Query: 278 VLIFA 282
              F 
Sbjct: 194 PGAFK 198

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 30/117 (25%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
              + L+ LS     L+    + L  L +L+ L L  N  +G +     K  NL  L+LS
Sbjct: 39  DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217
           GN+            ++  +                  E L KL+ L  LDL    +
Sbjct: 97  GNKIK----------DLSTI------------------EPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG-EIPSELGKLKNLKTLD 158
           +  L +LK+L L +N++S  +         L  L+L  N          L KL+NLK+LD
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 159 LSGNE 163
           L   E
Sbjct: 120 LFNCE 124

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDL 159
             L  L +L L  NQL    P     LT+L  LSLG N     +P  +  KL +LK L L
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164

Query: 160 SGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK 218
             N+       K +P     +L+ L+     +  +          L+ L ML L ENP  
Sbjct: 165 YNNQL------KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

Query: 219 CS 220
           C+
Sbjct: 219 CT 220

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 14/151 (9%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDL 159
             L +L+ L L +N+L          L  LETL +  N     +P  +  +L NL  L L
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 160 SGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSENPL 217
             N+       K LPP +   L+ L   S     +   LP+ +  KL  L  L L  N L
Sbjct: 117 DRNQL------KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL 169

Query: 218 KCSVPK-AIGELRKLGILNLGSTQLNGSIPA 247
           K  VP+ A  +L +L  L L + QL   +P 
Sbjct: 170 K-RVPEGAFDKLTELKTLKLDNNQLK-RVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEF 164
            K+L L  N+LS         LT+L  L L  N     +P+ +  +LKNL+TL ++ N+ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 165 NGTVRDKLLPPEI-GELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSENPLKCSVP 222
                 + LP  +  +L  L         +   LP  +   L  L+ L L  N L+ S+P
Sbjct: 98  ------QALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 223 K-AIGELRKLGILNLGSTQLNGSIPAEL-GKCENLMSVMLSCNALSGSLPE 271
           K    +L  L  L L + QL   +P     K   L ++ L  N L   +PE
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 38/142 (26%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDL 159
             LK L+ L + +N+L          L  L  L L  N     +P  +   L  L  L L
Sbjct: 82  KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140

Query: 160 SGNEFNGTVRDKLLPPEI----GELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSE 214
             NE       + LP  +      L  L ++++    +    PE    KL  L  L L  
Sbjct: 141 GYNEL------QSLPKGVFDKLTSLKELRLYNNQLKRV----PEGAFDKLTELKTLKLDN 190

Query: 215 NPLKCSVPKAIGELRKLGILNL 236
           N LK     A   L KL +L L
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQL 212

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT--GEIPSELGKLKNLKTLD 158
             L+RLK L +  N++          L  L  L L +NS    G++   L  LK+L  L 
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLC 119

Query: 159 LSGN 162
           +  N
Sbjct: 120 ILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 97  SRQVSNLKRLKQLSLGENQLSDFVPSQLGV-LTQLETLSLGSNSFTGEIPS--ELGKLKN 153
           + Q +N  R ++L L   ++       LG  L Q + +    N    EI        L+ 
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN----EIRKLDGFPLLRR 65

Query: 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP-EELSKLKFLSMLDL 212
           LKTL ++ N        ++       L  L      + S+      + L+ LK L+ L +
Sbjct: 66  LKTLLVNNNRIC-----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 213 SENPL 217
             NP+
Sbjct: 121 LRNPV 125

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 31/119 (26%)

Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSG 161
              + ++ L  N+L +        L  L+TL L SN  T  + ++    L +++ L L  
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 162 NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
           N+         + P          F +               L  LS L+L  NP  C+
Sbjct: 139 NQI------TTVAP--------GAFDT---------------LHSLSTLNLLANPFNCN 168

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 31/141 (21%)

Query: 107 KQLSLGENQLSDFVPS-QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
            +L L  N+ +    +     L QL  ++  +N  T            +  + L+ N   
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL- 93

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                + +  ++                          L+ L  L L  N + C    + 
Sbjct: 94  -----ENVQHKM-----------------------FKGLESLKTLMLRSNRITCVGNDSF 125

Query: 226 GELRKLGILNLGSTQLNGSIP 246
             L  + +L+L   Q+  ++ 
Sbjct: 126 IGLSSVRLLSLYDNQIT-TVA 145

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 13/171 (7%)

Query: 74  LSPSLFF-LSSLS--DLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVP-SQLGVLT 128
           L    F+ LS ++  ++        +       L  LK L +    L  F   +++    
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

Query: 129 QLETLSLGSNSFTGEIPSEL--GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186
               L +  N +   IP     G      TL L  N F  +V+            L  ++
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG----TKLDAVY 185

Query: 187 SSPSCSITGPLPEELSKLK-FLSMLDLSENPLKCSVPKAIGELRKLGILNL 236
            + +  +T    +    +    S+LD+S+  +     K +  L++L   N 
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 34/166 (20%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEF 164
            + L L E  L          L  +  + +  +    ++ S     L  +  +++     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR- 91

Query: 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP-- 222
                          L+ ++             P+ L +L  L  L +    LK   P  
Sbjct: 92  --------------NLTYID-------------PDALKELPLLKFLGIFNTGLK-MFPDL 123

Query: 223 KAIGELRKLGILNLGSTQLNGSIPAEL--GKCENLMSVMLSCNALS 266
             +       IL +       SIP     G C   +++ L  N  +
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 17/205 (8%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGEN-QLSDFVPSQLGVLTQLETLSLGSNSFTGEI 144
            L +  L    S   SNL  + ++ +  +  L          L+++  + + +      I
Sbjct: 37  KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96

Query: 145 PSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPPE--IGELSLLEIFSSPSCSITGPLPEE- 200
             + L +L  LK L +           K+ P    +    +  I           +P   
Sbjct: 97  DPDALKELPLLKFLGIFNTGL------KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 201 LSKLKFLSM-LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL--GKCENLMS 257
              L   ++ L L  N    SV        KL  + L   +    I  +   G       
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 258 VMLSCNALSGSLPEQ-LSELPVLIF 281
           + +S  +++ +LP + L  L  LI 
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLKELIA 233

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 32/143 (22%)

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFN 165
            ++ L +N +    P       +L  + L +N  + E+  +    L++L +L L GN+  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                  LP  +                          L  L +L L+ N + C    A 
Sbjct: 93  -----TELPKSL-----------------------FEGLFSLQLLLLNANKINCLRVDAF 124

Query: 226 GELRKLGILNLGSTQLNGSIPAE 248
            +L  L +L+L   +L  +I   
Sbjct: 125 QDLHNLNLLSLYDNKLQ-TIAKG 146

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 21/138 (15%)

Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSG 161
           L+ L  L L  N++++   S    L  L+ L L +N     +  +    L NL  L L  
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 162 NEFNGTVRDKLLPPEIGELSLLEIFSSP---SCSI--------------TGPLPEELSKL 204
           N+     +    P  +  +  + +  +P    C +              +G       +L
Sbjct: 138 NKLQTIAKGTFSP--LRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRL 195

Query: 205 KFLSMLDLSENPLKCSVP 222
               +  +     +CS  
Sbjct: 196 ANKRIGQIKSKKFRCSAA 213

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 32/117 (27%), Positives = 42/117 (35%), Gaps = 30/117 (25%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
           +    L+ LSL    L     S L  L +L+ L L  N   G +     KL NL  L+LS
Sbjct: 46  AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217
           GN+            +I  L                  E L KL+ L  LDL    +
Sbjct: 104 GNKLK----------DISTL------------------EPLKKLECLKSLDLFNCEV 132

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 46/162 (28%), Positives = 60/162 (37%), Gaps = 32/162 (19%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           DL    L          L +L  L+L  NQL          LT+L TL L +N       
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
                L  L  L L GN+       K LP          +F              L+KLK
Sbjct: 101 GVFDHLTQLDKLYLGGNQL------KSLPS--------GVFDR------------LTKLK 134

Query: 206 FLSMLDLSENPLKCSVPK-AIGELRKLGILNLGSTQLNGSIP 246
               L L+ N L+ S+P  A  +L  L  L+L + QL  S+P
Sbjct: 135 E---LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 35/141 (24%), Positives = 48/141 (34%), Gaps = 30/141 (21%)

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
           ++L L    L+    +    LT+L  L+L  N            L  L TL L+ N+   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-- 95

Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
                 LP  +                     + L++L     L L  N LK        
Sbjct: 96  ----ASLPLGV--------------------FDHLTQLDK---LYLGGNQLKSLPSGVFD 128

Query: 227 ELRKLGILNLGSTQLNGSIPA 247
            L KL  L L + QL  SIPA
Sbjct: 129 RLTKLKELRLNTNQLQ-SIPA 148

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 20/177 (11%)

Query: 76  PSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV---LTQLET 132
            +   L+S+  +  N    +  + +  L  ++ L+LG N+L       +     LT L  
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL-----HDISALKELTNLTY 89

Query: 133 LSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-GELSLLEIFSSPSC 191
           L L  N           KL NLK L L  N+       + LP  +  +L+ L   +    
Sbjct: 90  LILTGNQLQSLPNGVFDKLTNLKELVLVENQL------QSLPDGVFDKLTNLTYLNLAHN 143

Query: 192 SITGPLPEEL-SKLKFLSMLDLSENPLKCSVPKAI-GELRKLGILNLGSTQLNGSIP 246
            +   LP+ +  KL  L+ LDLS N L+ S+P+ +  +L +L  L L   QL  S+P
Sbjct: 144 QLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVP 197

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 5e-06
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 76  PSLFFLSSLSDLSQNPLFGQLSRQV-SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLS 134
           P    L+ L  +        L  +    L  L+ L++ ++ L    P       +L  L+
Sbjct: 28  PGAENLTEL-YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 135 LGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
           L  N+    +  +  +  +L+ L LSGN  +
Sbjct: 87  LSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 33/125 (26%)

Query: 98  RQVSNLKRLKQLSL-GENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLK 155
             +   + L +L +  +  L       L  L +L  L++  +     +  +       L 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 156 TLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSEN 215
            L+LS N        + L          +     S                L  L LS N
Sbjct: 84  RLNLSFNAL------ESLSW--------KTVQGLS----------------LQELVLSGN 113

Query: 216 PLKCS 220
           PL CS
Sbjct: 114 PLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 29/123 (23%)

Query: 143 EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS 202
           +    L   +NL  L +   +                L  LE               +L 
Sbjct: 22  DSLHHLPGAENLTELYIENQQ---------------HLQHLE-------------LRDLR 53

Query: 203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC 262
            L  L  L + ++ L+   P A     +L  LNL    L  S+  +  +  +L  ++LS 
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSG 112

Query: 263 NAL 265
           N L
Sbjct: 113 NPL 115

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 31/140 (22%)

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
           + L L +NQ++   P     L  L+ L LGSN            L  L  LDL  N+   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-- 100

Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
                +LP          +F              L  LK    L +  N L   +P+ I 
Sbjct: 101 ----TVLPS--------AVFDR------------LVHLK---ELFMCCNKLT-ELPRGIE 132

Query: 227 ELRKLGILNLGSTQLNGSIP 246
            L  L  L L   QL  SIP
Sbjct: 133 RLTHLTHLALDQNQLK-SIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 103 LKRLKQLSLGENQLSDFVPSQLGV---LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           L +L  L LG NQL+        V   L  L+ L +  N  T E+P  + +L +L  L L
Sbjct: 87  LTQLTVLDLGTNQLTVLPS---AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142

Query: 160 SGNE 163
             N+
Sbjct: 143 DQNQ 146

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 12/138 (8%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV---LTQLETLSLGSNSFTG 142
            L  N +         +L  LK+L LG NQL   +P   GV   LTQL  L LG+N  T 
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV--GVFDSLTQLTVLDLGTNQLTV 102

Query: 143 EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS 202
              +   +L +LK L +  N+         LP  I  L+ L   +     +         
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL------TELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 203 KLKFLSMLDLSENPLKCS 220
           +L  L+   L  NP  C 
Sbjct: 157 RLSSLTHAYLFGNPWDCE 174

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 99  QVSNLKRLKQLSLGENQLSDFVPSQLG---VLTQLETLSLGSNSFTGE----IPSELGKL 151
                  LK L + + +  + V        +L QLET+ + +   T E    +   + K+
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 152 KNLKTLDLSGNEFNGTVRDKL 172
           K+LK +++  N  +  ++ +L
Sbjct: 307 KHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 15/190 (7%)

Query: 106 LKQLSLGENQLSDFVPSQLG-VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164
              +   E ++S      L  VL  +  L+      T  +        NLK+L++     
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS------KLKFLSMLDLSENPLK 218
             +V + +L  ++  L  L ++                      +   L  L + +   +
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265

Query: 219 CSVPKAIGE---LRKLGILNLGSTQLNGS----IPAELGKCENLMSVMLSCNALSGSLPE 271
             V +   E   L +L  +++ +  L       +   + K ++L  + +  N LS  + +
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325

Query: 272 QLSE-LPVLI 280
           +L + LP+ I
Sbjct: 326 ELQKSLPMKI 335

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            L  N     + +++SN K L  + L  N++S         +TQL TL L  N     IP
Sbjct: 37  YLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIP 94

Query: 146 SEL-GKLKNLKTLDLSGNE 163
                 LK+L+ L L GN+
Sbjct: 95  PRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 33/127 (25%)

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179
           +P   G+   +  L L  N FT  +P EL   K+L  +DLS N          L      
Sbjct: 25  LPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI------STLSN---- 71

Query: 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST 239
               + F               S +  L  L LS N L+C  P+    L+ L +L+L   
Sbjct: 72  ----QSF---------------SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112

Query: 240 QLNGSIP 246
            ++  +P
Sbjct: 113 DIS-VVP 118

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 31/117 (26%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
           S ++ L+ LSLG N +         V   LE L +  N     + S + KL NL+ L +S
Sbjct: 67  SGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMS 123

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217
            N             +I     ++                L+ L  L  L L+ NPL
Sbjct: 124 NN-------------KITNWGEIDK---------------LAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT--GEIPSELGKLKNLKTLD 158
           +    L++L +  NQ++    S +  L  L  L + +N  T  GEI  +L  L  L+ L 
Sbjct: 90  AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLL 146

Query: 159 LSGNEFNGTVRDKLLPPE 176
           L+GN      ++     E
Sbjct: 147 LAGNPLYNDYKENNATSE 164

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 41/243 (16%), Positives = 70/243 (28%), Gaps = 40/243 (16%)

Query: 74  LSPSLFFLSSLS--DLSQNPL----FGQLSRQVSNLKRLKQLSLGENQLSD--------- 118
           L  +L     L    LS N         L   +S    L+ L L  N L           
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 119 ----FVPSQLGVLTQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRD 170
                V  +      L ++  G N                 + L T+ +  N       +
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 171 KLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
            LL   +     L++      + T      L   L     L  L L++  L      A+ 
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 227 EL------RKLGILNLGSTQLNGSIPAELG-----KCENLMSVMLSCNALS--GSLPEQL 273
           +         L  L L   ++       L      K  +L+ + L+ N  S    + +++
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325

Query: 274 SEL 276
            E+
Sbjct: 326 REV 328

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 28/188 (14%), Positives = 65/188 (34%), Gaps = 26/188 (13%)

Query: 104 KRLKQLSLGENQLSDFVPSQLGVL-----TQLETLSLGSNSFTGEIPSELGKL-----KN 153
             +  L+L  N L+    ++L          + +L L +N    +  +EL  +      +
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 154 LKTLDLSGNEFNGTVRDKL--LPPEIGELSLLEIFSSPSCSITG----PLPEELSKLKFL 207
           + +L+L  N  +G   + L  L   +  L  + +      +++      L      ++ +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 208 SMLDLSENPLKCSVPKAIGE--------LRKLGILNLGST--QLNGSIPAELGKCENLMS 257
            ++D +   +  S    I               +LN      Q + +   +L   + L  
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 258 VMLSCNAL 265
            + +C  L
Sbjct: 347 SIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 45/197 (22%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLG-----VLTQLETLSLGSNSFTGEIPSELGKL---- 151
           +    +  L+L  N L      +L      +   + +L+L  N+   +  +EL K     
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 152 -KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML 210
             ++ +LDLS N                   L  IFSS    +                L
Sbjct: 195 PASVTSLDLSANLLG----------LKSYAELAYIFSSIPNHVV--------------SL 230

Query: 211 DLSENPLKCSVPKAIGELRK----LGILNLGSTQLNG-------SIPAELGKCENLMSVM 259
           +L  N L     + +  L+     L  + L    +         ++ A     + ++ V 
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 260 LSCNALSGSLPEQLSEL 276
            +   +  S    +S L
Sbjct: 291 KNGKEIHPSHSIPISNL 307

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 37/195 (18%), Positives = 63/195 (32%), Gaps = 43/195 (22%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLG-----VLTQLETLSLGSNSFTGEIPSELGKL---- 151
           +    +  L LG N  S    S+       +   + +L+L  N    +   EL ++    
Sbjct: 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165

Query: 152 -KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML 210
             N+ +L+L GN                   L +  +S   S+T               L
Sbjct: 166 PANVNSLNLRGNNLA----------SKNCAELAKFLASIPASVT--------------SL 201

Query: 211 DLSENPLKCSVPKAIGEL-----RKLGILNLGSTQLNGS----IPAELGKCENLMSVMLS 261
           DLS N L       +  +       +  LNL    L+G     +       ++L +V L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 262 CNALSGSLPEQLSEL 276
            + +     EQ   L
Sbjct: 262 YDIVKNMSKEQCKAL 276

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 43/239 (17%), Positives = 82/239 (34%), Gaps = 12/239 (5%)

Query: 50  WVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQL 109
           W  ++        L L   +L   ++  L     ++         Q   +  +  R++ +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM 98

Query: 110 SLGENQLSD-FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTV 168
            L  + +    +   L   ++L+ LSL     +  I + L K  NL  L+LSG       
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG---F 155

Query: 169 RDKLLPPEIGELSLLEIFSSPSC------SITGPLPEELSKLKFLSMLDLSENPLKCSVP 222
            +  L   +   S L+  +   C       +   +      +  L++    +N  K  + 
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 223 KAIGELRKLGILNL-GSTQLNGSIPAELGKCENLMSVMLS-CNALSGSLPEQLSELPVL 279
             +     L  L+L  S  L      E  +   L  + LS C  +      +L E+P L
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLS 160
            L  L +L L  NQL+   P+     + ++ L LG N    EI +++   L  LKTL+L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110

Query: 161 GN 162
            N
Sbjct: 111 DN 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 32/141 (22%)

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
             L L  N L          LT L  L LG N           KL +L  L+LS N+   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-- 88

Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK-AI 225
               + LP          +F              L++LK    L L+ N L+ S+P    
Sbjct: 89  ----QSLPN--------GVFDK------------LTQLKE---LALNTNQLQ-SLPDGVF 120

Query: 226 GELRKLGILNLGSTQLNGSIP 246
            +L +L  L L   QL  S+P
Sbjct: 121 DKLTQLKDLRLYQNQLK-SVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           DL  N L    +     L  L QL LG N+L          LT L  L+L +N       
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93

Query: 146 SELGKLKNLKTLDLSGNEF----NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEE- 200
               KL  LK L L+ N+     +G V DKL      +L  L ++ +   S+    P+  
Sbjct: 94  GVFDKLTQLKELALNTNQLQSLPDG-VFDKL-----TQLKDLRLYQNQLKSV----PDGV 143

Query: 201 LSKLKFLSMLDLSENPLKCSVP 222
             +L  L  + L +NP  C+ P
Sbjct: 144 FDRLTSLQYIWLHDNPWDCTCP 165

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 103 LKRLKQLSLGENQLSDFVPSQLGV---LTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLD 158
           L +L +LSL +NQ+        GV   LT+L  L L  N     +P+ +  KL  LK L 
Sbjct: 51  LTQLTKLSLSQNQIQSLPD---GVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELA 106

Query: 159 LSGNE 163
           L  N+
Sbjct: 107 LDTNQ 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.46

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.8e-42  Score=292.64  Aligned_cols=264  Identities=28%  Similarity=0.459  Sum_probs=234.1

Q ss_pred             CCChhhHHHHHHHHHhccCCCCCCCCCCCCCCCC--ccceEecC----CCEEEEEcCCCCccc--ccCccccccccc--c
Q 041406           16 DEQNPDEQSLISFKNALESSHNLVSWNKTNPHCY--WVGVSCQR----GRVIWLVLPTHSLKG--PLSPSLFFLSSL--S   85 (286)
Q Consensus        16 ~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~----~~l~~l~l~~~~l~~--~~~~~~~~l~~l--L   85 (286)
                      .|.+.|+.||++||+++.++..+.+|..+.++|.  |.||+|..    .+|+.|+++++++.+  .+|..+..+++|  |
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L   81 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence            4678899999999999976544889987666688  99999985    489999999999999  899999999999  9


Q ss_pred             ccCC-CCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           86 DLSQ-NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        86 ~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+
T Consensus        82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A           82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence            9995 999999999999999999999999999988999999999999999999999989999999999999999999999


Q ss_pred             ccccCCCCCCccccCCC-CCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406          165 NGTVRDKLLPPEIGELS-LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG  243 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  243 (286)
                      ++.+     |..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus       162 ~~~~-----p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          162 SGAI-----PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             EEEC-----CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cCcC-----CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            7654     67888887 899999999999888888888876 9999999998887788888888888888888888886


Q ss_pred             cCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          244 SIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       244 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+|. +..+++|++|++++|++++.+|..+..++ |++|++++|
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            6555 77788888888888888888888888888 888888876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.9e-37  Score=290.05  Aligned_cols=271  Identities=27%  Similarity=0.384  Sum_probs=173.9

Q ss_pred             hcCCCChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCccceEecCCCEEEEEcCCCCcccc---cCc-------------
Q 041406           13 EADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGP---LSP-------------   76 (286)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~l~~l~l~~~~l~~~---~~~-------------   76 (286)
                      ++++..++|+.||++||+++.++..+++|..+.++|.|.||+|+..+|+.|+|+++++.|.   +|+             
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            3444567899999999999986545899986666699999999966999999999999886   554             


Q ss_pred             ----------cccccccc--cccCCCCCccccch--hhcCCCCCCEEEccCCCCCCCCcccc-ccCCCCCEEecCCCCCC
Q 041406           77 ----------SLFFLSSL--SDLSQNPLFGQLSR--QVSNLKRLKQLSLGENQLSDFVPSQL-GVLTQLETLSLGSNSFT  141 (286)
Q Consensus        77 ----------~~~~l~~l--L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~  141 (286)
                                .+..+++|  |++++|.+.+.+|.  .++.+++|++|++++|.+.+..|..+ ..+++|++|++++|.++
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  164 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS  164 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence                      45566666  78888888777777  78888888888888887776666544 66777777777777776


Q ss_pred             CCCCcc---cCCCCCCCEEEccCCccccccCCC-----------------CCCccccCCCCCCEEEccCCcccccCChhc
Q 041406          142 GEIPSE---LGKLKNLKTLDLSGNEFNGTVRDK-----------------LLPPEIGELSLLEIFSSPSCSITGPLPEEL  201 (286)
Q Consensus       142 ~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~-----------------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~  201 (286)
                      +..+..   +..+++|++|++++|.+.+..+..                 .+|. +..+++|++|++++|.+++.+|..+
T Consensus       165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH
Confidence            555544   455555555555555554322110                 1122 4555555555555555555555555


Q ss_pred             cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCC-CCCCEEEcccCcCccccchhccCcc-cc
Q 041406          202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKC-ENLMSVMLSCNALSGSLPEQLSELP-VL  279 (286)
Q Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~-L~  279 (286)
                      ..+++|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|++++.+|..+..++ |+
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  321 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE  321 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred             hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence            55555555555555554433322  34444444444454444555554443 5666666666666666666666666 66


Q ss_pred             eEEccCC
Q 041406          280 IFAAEKN  286 (286)
Q Consensus       280 ~l~l~~N  286 (286)
                      +|++++|
T Consensus       322 ~L~L~~n  328 (768)
T 3rgz_A          322 SLALSSN  328 (768)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            6666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-37  Score=286.55  Aligned_cols=244  Identities=24%  Similarity=0.319  Sum_probs=181.8

Q ss_pred             cCCCChhhHHHHHHHHHhccCCCC-CC--------CCCCCCCCCCc---cceEecCC-CEEEEEcCCCCcccccCccccc
Q 041406           14 ADDEQNPDEQSLISFKNALESSHN-LV--------SWNKTNPHCYW---VGVSCQRG-RVIWLVLPTHSLKGPLSPSLFF   80 (286)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~-~~--------~w~~~~~~c~w---~gv~c~~~-~l~~l~l~~~~l~~~~~~~~~~   80 (286)
                      +++...+|+.||.++|+++.+++| ..        +|+.+.+.|.|   .||+|+.. +|+.|+|+++++.|.+|++++.
T Consensus        24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~  103 (636)
T 4eco_A           24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ  103 (636)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence            344556899999999999998877 22        69887666999   99999876 9999999999999999999999


Q ss_pred             cccc--cccCCCC-------------------------------------------------------------------
Q 041406           81 LSSL--SDLSQNP-------------------------------------------------------------------   91 (286)
Q Consensus        81 l~~l--L~l~~n~-------------------------------------------------------------------   91 (286)
                      +++|  |++++|.                                                                   
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            9999  8998884                                                                   


Q ss_pred             -----------CccccchhhcCCCCCCEEEccCCCCCCC-----------------Cccccc--cCCCCCEEecCCCCCC
Q 041406           92 -----------LFGQLSRQVSNLKRLKQLSLGENQLSDF-----------------VPSQLG--VLTQLETLSLGSNSFT  141 (286)
Q Consensus        92 -----------~~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~  141 (286)
                                 +++ +|..++++++|++|++++|.+++.                 +|..++  .+++|++|++++|.+.
T Consensus       184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~  262 (636)
T 4eco_A          184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL  262 (636)
T ss_dssp             CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred             hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence                       334 788899999999999999999985                 888888  9999999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCCc-ccc-ccCCCCCCccccCC------CCCCEEEccCCcccccCCh--hccCCCCCCEEE
Q 041406          142 GEIPSELGKLKNLKTLDLSGNE-FNG-TVRDKLLPPEIGEL------SLLEIFSSPSCSITGPLPE--ELSKLKFLSMLD  211 (286)
Q Consensus       142 ~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~~l------~~L~~L~l~~n~~~~~~p~--~~~~~~~L~~L~  211 (286)
                      +.+|..+..+++|++|++++|. +++ .+     |..+..+      ++|++|++++|.++ .+|.  .+..+++|++|+
T Consensus       263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l-----p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~  336 (636)
T 4eco_A          263 TKLPTFLKALPEMQLINVACNRGISGEQL-----KDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLE  336 (636)
T ss_dssp             SSCCTTTTTCSSCCEEECTTCTTSCHHHH-----HHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEE
T ss_pred             ccChHHHhcCCCCCEEECcCCCCCccccc-----hHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEe
Confidence            9999999999999999999998 876 33     3444443      55566666655555 4554  555555555555


Q ss_pred             cccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC-CCEEEcccCcCc
Q 041406          212 LSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN-LMSVMLSCNALS  266 (286)
Q Consensus       212 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~  266 (286)
                      +++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++
T Consensus       337 L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             CCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred             CcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence            55555554554 4444444444444444444 44444444444 444444444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=4.8e-37  Score=261.97  Aligned_cols=262  Identities=21%  Similarity=0.280  Sum_probs=233.2

Q ss_pred             CCCChhhHHHHHHHHHhccCCC-C-CCCCC----CCCCCCCccceEecC----------CCEEEEEcCCCCcccccCccc
Q 041406           15 DDEQNPDEQSLISFKNALESSH-N-LVSWN----KTNPHCYWVGVSCQR----------GRVIWLVLPTHSLKGPLSPSL   78 (286)
Q Consensus        15 ~~~~~~~~~~l~~~~~~~~~~~-~-~~~w~----~~~~~c~w~gv~c~~----------~~l~~l~l~~~~l~~~~~~~~   78 (286)
                      .+....|+.||++||.++..+. . ...|.    .....|.|.|+.|..          .+++.|++++++++ .+|..+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            4455678999999999885443 2 67783    333349999999952          48999999999998 788889


Q ss_pred             cccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCC------
Q 041406           79 FFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGK------  150 (286)
Q Consensus        79 ~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------  150 (286)
                      ..+++|  |++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            999999  999999998 88999999999999999999999 57889999999999999999888888887654      


Q ss_pred             ---CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhC
Q 041406          151 ---LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE  227 (286)
Q Consensus       151 ---l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (286)
                         +++|++|++++|.++      .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..++.
T Consensus       179 ~~~l~~L~~L~L~~n~l~------~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             EEESTTCCEEEEEEECCC------CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             hccCCCCCEEECcCCCcC------cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence               999999999999986      35788999999999999999999 46777999999999999999999999999999


Q ss_pred             CCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          228 LRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       228 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.+.+++ ++.+++..|
T Consensus       252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            99999999999999999999999999999999999999999999999999 999988653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.6e-36  Score=281.26  Aligned_cols=259  Identities=21%  Similarity=0.318  Sum_probs=206.6

Q ss_pred             cCCCChhhHHHHHHHHHhccCCCCCCCCCCCC-----CC--CCc------------cceEecCC-CEEEEEcCCCCcccc
Q 041406           14 ADDEQNPDEQSLISFKNALESSHNLVSWNKTN-----PH--CYW------------VGVSCQRG-RVIWLVLPTHSLKGP   73 (286)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~-~l~~l~l~~~~l~~~   73 (286)
                      +++...+|+.||++||+++.++    +|+.+.     .+  |.|            .||+|+.. +|+.|+|+++++.|.
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~  338 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR  338 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE
T ss_pred             ccccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCc
Confidence            4445568999999999999876    454332     34  999            99999864 999999999999999


Q ss_pred             cCccccccccc--ccc-CCCCCccc-------------------------------------------------------
Q 041406           74 LSPSLFFLSSL--SDL-SQNPLFGQ-------------------------------------------------------   95 (286)
Q Consensus        74 ~~~~~~~l~~l--L~l-~~n~~~~~-------------------------------------------------------   95 (286)
                      +|++++.+++|  |++ ++|.+.+.                                                       
T Consensus       339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence            99999999999  999 66643322                                                       


Q ss_pred             ---------------------cchhhcCCCCCCEEEccCCCCCC-----------------CCccccc--cCCCCCEEec
Q 041406           96 ---------------------LSRQVSNLKRLKQLSLGENQLSD-----------------FVPSQLG--VLTQLETLSL  135 (286)
Q Consensus        96 ---------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l  135 (286)
                                           +|..++++++|++|++++|.+++                 .+|..++  .+++|++|++
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L  498 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL  498 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence                                 78889999999999999999998                 3788877  9999999999


Q ss_pred             CCCCCCCCCCcccCCCCCCCEEEccCCc-ccc-ccCCCCCCccccCC-------CCCCEEEccCCcccccCCh--hccCC
Q 041406          136 GSNSFTGEIPSELGKLKNLKTLDLSGNE-FNG-TVRDKLLPPEIGEL-------SLLEIFSSPSCSITGPLPE--ELSKL  204 (286)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~~l-------~~L~~L~l~~n~~~~~~p~--~~~~~  204 (286)
                      ++|.+.+.+|..+..+++|+.|++++|. +++ .+     |..+..+       ++|++|++++|.+. .+|.  .+..+
T Consensus       499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i-----P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L  572 (876)
T 4ecn_A          499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL-----KADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM  572 (876)
T ss_dssp             ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH-----HHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred             cCCCCCccChHHHhCCCCCCEEECcCCCCcccccc-----hHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence            9999999999999999999999999998 876 43     4444433       47888888888877 6676  77777


Q ss_pred             CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC-CCEEEcccCcCccccchhccCcc---cce
Q 041406          205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN-LMSVMLSCNALSGSLPEQLSELP---VLI  280 (286)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~---L~~  280 (286)
                      ++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++   |+.
T Consensus       573 ~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~  648 (876)
T 4ecn_A          573 VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS  648 (876)
T ss_dssp             TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred             CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence            78888888888777 666 6777777777777777777 67777777777 777777777777 6666655443   666


Q ss_pred             EEccCC
Q 041406          281 FAAEKN  286 (286)
Q Consensus       281 l~l~~N  286 (286)
                      |++++|
T Consensus       649 L~Ls~N  654 (876)
T 4ecn_A          649 VDFSYN  654 (876)
T ss_dssp             EECCSS
T ss_pred             EECcCC
Confidence            666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.7e-32  Score=257.10  Aligned_cols=223  Identities=35%  Similarity=0.514  Sum_probs=191.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+.+.+|..+..+++|  +++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            67788888888888888888888888  8888888888888888888888888888888887788888888888888888


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc---------------
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL---------------  201 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~---------------  201 (286)
                      +|++++.+|..+..+++|++|++++|.+.+.+     |..+..+++|++|++++|.+.+.+|..+               
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-----PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC-----CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcC-----CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            88888888888888888888888888887654     6788889999999999998887666543               


Q ss_pred             -------------------------------------------------------cCCCCCCEEEcccCCCCcccchhhh
Q 041406          202 -------------------------------------------------------SKLKFLSMLDLSENPLKCSVPKAIG  226 (286)
Q Consensus       202 -------------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~  226 (286)
                                                                             ..+++|+.|++++|.++|.+|..++
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  653 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG  653 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence                                                                   2346788999999999999999999


Q ss_pred             CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          227 ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       227 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+++|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|+.+..++ |++|++++|
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            999999999999999999999999999999999999999999999999999 999999987

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1.4e-32  Score=232.98  Aligned_cols=220  Identities=24%  Similarity=0.420  Sum_probs=205.9

Q ss_pred             CEEEEEcCC-CCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406           59 RVIWLVLPT-HSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~-~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  135 (286)
                      +++.|++++ |.+.+.+|..+..+++|  |++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            789999995 99999999999999999  999999999999999999999999999999999889999999999999999


Q ss_pred             CCCCCCCCCCcccCCCC-CCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406          136 GSNSFTGEIPSELGKLK-NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE  214 (286)
Q Consensus       136 ~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~  214 (286)
                      ++|.+++.+|..+..++ +|++|++++|.+.+..     |..+..++ |++|++++|.+.+..|..+..+++|+.|++++
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~-----~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-----PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-----CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-----ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            99999989999999998 9999999999998654     67888887 99999999999999999999999999999999


Q ss_pred             CCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          215 NPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       215 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      |.+++.++. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|.. ..++ |+.+++++|
T Consensus       231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN  301 (313)
T ss_dssp             SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred             CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence            999866655 788999999999999999999999999999999999999999999986 8888 999999887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=2.9e-30  Score=217.96  Aligned_cols=233  Identities=24%  Similarity=0.251  Sum_probs=204.0

Q ss_pred             CCccceEecCC-----------CEEEEEcCCCCcccccCccccccccc--cccCCCCCccc--cchhhcCCCCCCEEEcc
Q 041406           48 CYWVGVSCQRG-----------RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQ--LSRQVSNLKRLKQLSLG  112 (286)
Q Consensus        48 c~w~gv~c~~~-----------~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~--~~~~l~~l~~L~~L~l~  112 (286)
                      |.|.++.|...           +++.|++++|+++...+..+..+++|  +++++|.+...  .+..+..+++|++|+++
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            78888888742           68999999999985444457899999  99999998743  46777889999999999


Q ss_pred             CCCCCCCCccccccCCCCCEEecCCCCCCCCCC-cccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCC
Q 041406          113 ENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC  191 (286)
Q Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n  191 (286)
                      +|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..     +..+..+++|++|++++|
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-----NGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-----TTTTTTCTTCCEEECTTC
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-----hhhcccCcCCCEEECCCC
Confidence            999886 67778999999999999999985444 57889999999999999987543     567888999999999999


Q ss_pred             cccc-cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406          192 SITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP  270 (286)
Q Consensus       192 ~~~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  270 (286)
                      .+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus       161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            9986 578889999999999999999997778899999999999999999997666678899999999999999998889


Q ss_pred             hhccCcc--cceEEccCC
Q 041406          271 EQLSELP--VLIFAAEKN  286 (286)
Q Consensus       271 ~~l~~l~--L~~l~l~~N  286 (286)
                      ..+..++  |++|++++|
T Consensus       241 ~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             SSCCCCCTTCCEEECTTC
T ss_pred             HHHHhhhccCCEEEccCC
Confidence            9999985  999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2.7e-29  Score=223.17  Aligned_cols=222  Identities=20%  Similarity=0.202  Sum_probs=200.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+|++|++++..+..+..+++|  |++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            78999999999999889999999999  9999999998888999999999999999999998777779999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.++...+..+..+++|+.|++++|...+.++    +..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS----EGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSC
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccC----hhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCc
Confidence            999996666688999999999999965444443    3568889999999999999984 44 47889999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            9988899999999999999999999988888899999999999999999966667789999 999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=8.9e-29  Score=219.11  Aligned_cols=222  Identities=22%  Similarity=0.221  Sum_probs=200.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+|++|++.+..+..+..+++|  |++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            68999999999998888899999999  9999999998888999999999999999999998777789999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.++...+..+..+++|+.|++++|...+.++    +..+..+++|++|++++|.++ .+| .+..+++|+.|++++|.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSC
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCc
Confidence            999996666688999999999999965544442    356888999999999999998 455 47889999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence            9988889999999999999999999988888899999999999999999966667889999 999999987

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=2.3e-29  Score=223.60  Aligned_cols=223  Identities=21%  Similarity=0.191  Sum_probs=134.1

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCcccc-chhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQL-SRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  135 (286)
                      +++.|++++|.+++..|..+..+++|  |++++|.+.+.+ +..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            57888888888877767777777777  777777665444 345666777777777777666655666666666666666


Q ss_pred             CCCCCCCCCCcc--cCCCCCCCEEEccCCccccccCCCCCCcc-ccCCCC------------------------------
Q 041406          136 GSNSFTGEIPSE--LGKLKNLKTLDLSGNEFNGTVRDKLLPPE-IGELSL------------------------------  182 (286)
Q Consensus       136 ~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~~~l~~------------------------------  182 (286)
                      ++|.+++..+..  +..+++|++|++++|.+.+..+     .. +..+++                              
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-----ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-----CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCc-----ccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            666665432222  4455555555555555543221     11 223333                              


Q ss_pred             --------------------------------------------------------------------------------
Q 041406          183 --------------------------------------------------------------------------------  182 (286)
Q Consensus       183 --------------------------------------------------------------------------------  182 (286)
                                                                                                      
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  265 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD  265 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence                                                                                            


Q ss_pred             -----------CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC
Q 041406          183 -----------LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK  251 (286)
Q Consensus       183 -----------L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  251 (286)
                                 |++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..
T Consensus       266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence                       333333333333334444555566666666666666555556666666666666666666555556666


Q ss_pred             CCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          252 CENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       252 ~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++|++|++++|++++..|..+..++ |++|++++|
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence            66666666666666655566666666 777766665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=1.7e-28  Score=217.97  Aligned_cols=228  Identities=22%  Similarity=0.230  Sum_probs=175.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchh--hcCCCCCCEEEccCCCCCCCCccc-cccCCCCCEE
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQ--VSNLKRLKQLSLGENQLSDFVPSQ-LGVLTQLETL  133 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L  133 (286)
                      +++.|++++|.+.+..|..+..+++|  |++++|.+.+..+..  +..+++|++|++++|.+.+..|.. +..+++|++|
T Consensus        80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  159 (455)
T 3v47_A           80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL  159 (455)
T ss_dssp             TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred             cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence            67777777777776666777777777  777777776655444  677777777777777777665554 6777777777


Q ss_pred             ecCCCCCCCCCCcccCC----------------------------------CCCCCEEEccCCccccccCC---------
Q 041406          134 SLGSNSFTGEIPSELGK----------------------------------LKNLKTLDLSGNEFNGTVRD---------  170 (286)
Q Consensus       134 ~l~~n~l~~~~~~~l~~----------------------------------l~~L~~L~l~~n~~~~~~~~---------  170 (286)
                      ++++|.+++..+..+..                                  +++|++|++++|.+.+..+.         
T Consensus       160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  239 (455)
T 3v47_A          160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT  239 (455)
T ss_dssp             ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred             eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence            77777776554443322                                  23455555555544321100         


Q ss_pred             -------------------------------------------------CCCCccccCCCCCCEEEccCCcccccCChhc
Q 041406          171 -------------------------------------------------KLLPPEIGELSLLEIFSSPSCSITGPLPEEL  201 (286)
Q Consensus       171 -------------------------------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~  201 (286)
                                                                       ...|..+..+++|++|++++|.+.+..|..+
T Consensus       240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  319 (455)
T 3v47_A          240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF  319 (455)
T ss_dssp             CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence                                                             0135678889999999999999998888899


Q ss_pred             cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cce
Q 041406          202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLI  280 (286)
Q Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~  280 (286)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |++
T Consensus       320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence            9999999999999999977788999999999999999999988899999999999999999999965556789999 999


Q ss_pred             EEccCC
Q 041406          281 FAAEKN  286 (286)
Q Consensus       281 l~l~~N  286 (286)
                      |++++|
T Consensus       400 L~l~~N  405 (455)
T 3v47_A          400 IWLHTN  405 (455)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            999987

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.2e-28  Score=203.43  Aligned_cols=204  Identities=22%  Similarity=0.169  Sum_probs=119.6

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-CCCCCccccccCCCCCEEec
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-LSDFVPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  135 (286)
                      +++.|+++++.+++..+..+..++++  +++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            56666666666665554556666666  6666666655555556666666666666665 55544555666666666666


Q ss_pred             CCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccC
Q 041406          136 GSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSEN  215 (286)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n  215 (286)
                      ++|.+++..+..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccC-----HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            666666544555556666666666666654321     233555666666666666665444444555666666666666


Q ss_pred             CCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       216 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      .+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus       188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            6665555556666666666666666664333445556666666666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3e-28  Score=207.80  Aligned_cols=238  Identities=19%  Similarity=0.254  Sum_probs=144.1

Q ss_pred             CCCCCCCCCC---CCccceEecC-----------CCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhc
Q 041406           38 LVSWNKTNPH---CYWVGVSCQR-----------GRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVS  101 (286)
Q Consensus        38 ~~~w~~~~~~---c~w~gv~c~~-----------~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~  101 (286)
                      +..|...++.   |.|+.+.|..           ..++.|++++|.+++..+..+..+++|  |++++|.+.+..|..|.
T Consensus        18 i~~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (330)
T 1xku_A           18 IEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA   97 (330)
T ss_dssp             ----CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             cccccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence            4455544442   6788888863           268899999999998777789999999  99999999988899999


Q ss_pred             CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCC
Q 041406          102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS  181 (286)
Q Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~  181 (286)
                      .+++|++|++++|.++. +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+....   ..+..+..++
T Consensus        98 ~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~l~  171 (330)
T 1xku_A           98 PLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---IENGAFQGMK  171 (330)
T ss_dssp             TCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---BCTTGGGGCT
T ss_pred             CCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC---cChhhccCCC
Confidence            99999999999999885 444332  67777777777777555555667777777777777664211   1234455555


Q ss_pred             CCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcc
Q 041406          182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLS  261 (286)
Q Consensus       182 ~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  261 (286)
                      +|++|++++|.+. .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus       172 ~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             TCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence            5555555555544 2232221  344444444444443334444444444444444444443333344444444444444


Q ss_pred             cCcCccccchhccCcc-cceEEccC
Q 041406          262 CNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       262 ~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                      +|+++ .+|..+..++ |++|++++
T Consensus       249 ~N~l~-~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          249 NNKLV-KVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             SSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             CCcCc-cCChhhccCCCcCEEECCC
Confidence            44444 4444444444 44444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=215.62  Aligned_cols=220  Identities=21%  Similarity=0.224  Sum_probs=189.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|++++..+..+..+++|  |++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            79999999999998777689999999  9999999998888899999999999999999998666668999999999999


Q ss_pred             CCCCCCCCCc--ccCCCCCCCEEEccCCc-cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcc
Q 041406          137 SNSFTGEIPS--ELGKLKNLKTLDLSGNE-FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLS  213 (286)
Q Consensus       137 ~n~l~~~~~~--~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~  213 (286)
                      +|+++ .+|.  .+..+++|++|++++|. +.+ +    .+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~-~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK-I----QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE-E----CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCCCccccc-c----CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            99998 4554  78899999999999995 543 2    25678899999999999999998889999999999999999


Q ss_pred             cCCCCcccch-hhhCCCCCCEEEcccccccccC-------------------------------CccCCCCCCCCEEEcc
Q 041406          214 ENPLKCSVPK-AIGELRKLGILNLGSTQLNGSI-------------------------------PAELGKCENLMSVMLS  261 (286)
Q Consensus       214 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-------------------------------~~~~~~~~~L~~L~l~  261 (286)
                      +|.++ .+|. .+..+++|++|++++|.+++..                               |..+..+++|++|+++
T Consensus       207 ~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls  285 (353)
T 2z80_A          207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS  285 (353)
T ss_dssp             CSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred             CCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence            99997 4444 4456899999999999988632                               2345678899999999


Q ss_pred             cCcCccccchh-ccCcc-cceEEccCC
Q 041406          262 CNALSGSLPEQ-LSELP-VLIFAAEKN  286 (286)
Q Consensus       262 ~n~l~~~~~~~-l~~l~-L~~l~l~~N  286 (286)
                      +|+++ .+|.. +..++ |++|++++|
T Consensus       286 ~N~l~-~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          286 RNQLK-SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence            99999 67765 58999 999999987

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=5.5e-28  Score=201.98  Aligned_cols=219  Identities=21%  Similarity=0.204  Sum_probs=192.0

Q ss_pred             EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406           60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS  137 (286)
Q Consensus        60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  137 (286)
                      .+.++.++++++ .+|..+.  +.+  +++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcc-cCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            366777777776 3455443  455  89999999888778899999999999999999987788999999999999999


Q ss_pred             CC-CCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          138 NS-FTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       138 n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      |. +....+..+..+++|++|++++|.+.+..     |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-----PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEEC-----HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            97 77555788999999999999999997533     5778899999999999999997666778999999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..++ |++|++++|
T Consensus       165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            9965556789999999999999999988899999999999999999999976667899999 999999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=9.3e-28  Score=199.10  Aligned_cols=215  Identities=23%  Similarity=0.246  Sum_probs=185.0

Q ss_pred             CCCCccceEecCC-CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCcc
Q 041406           46 PHCYWVGVSCQRG-RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPS  122 (286)
Q Consensus        46 ~~c~w~gv~c~~~-~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  122 (286)
                      ..|.|.|+.|... +.+.+++++++++. +|..+.  ..+  |++++|.+.+..+..|..+++|++|++++|.++...+.
T Consensus         3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~   79 (270)
T 2o6q_A            3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG   79 (270)
T ss_dssp             CCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence            3499999999754 67899999999984 666555  345  89999999887777899999999999999999986666


Q ss_pred             ccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhcc
Q 041406          123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS  202 (286)
Q Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~  202 (286)
                      .|..+++|++|++++|.++...+..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+.+..+..+.
T Consensus        80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-----PRVFDSLTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-----HHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence            7789999999999999999666667889999999999999987533     45678999999999999999976666688


Q ss_pred             CCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 041406          203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS  268 (286)
Q Consensus       203 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  268 (286)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            999999999999999976666788999999999999999966666688899999999999998743

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=7.5e-28  Score=205.52  Aligned_cols=232  Identities=20%  Similarity=0.241  Sum_probs=178.3

Q ss_pred             CCccceEecCC-----------CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCC
Q 041406           48 CYWVGVSCQRG-----------RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGEN  114 (286)
Q Consensus        48 c~w~gv~c~~~-----------~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  114 (286)
                      |.|..+.|...           +++.|++++|.+.+..+..+..+++|  +++++|.+.+..|..|+.+++|++|++++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            67888888632           68999999999998878889999999  999999999888999999999999999999


Q ss_pred             CCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC--------------
Q 041406          115 QLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL--------------  180 (286)
Q Consensus       115 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l--------------  180 (286)
                      .++. +|..+.  ++|++|++++|.++...+..+..+++|+.|++++|.++....   .+..+..+              
T Consensus       113 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          113 HLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF---EPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             CCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS---CTTSSCSCCCSCCBCCSSBCSS
T ss_pred             cCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC---CcccccCCccCEEECcCCCCCc
Confidence            9986 554443  789999999999986555678899999999999998853110   12222222              


Q ss_pred             ------CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC
Q 041406          181 ------SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN  254 (286)
Q Consensus       181 ------~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  254 (286)
                            ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence                  46777777777777666667777778888888888877666667777788888888888777 67777777788


Q ss_pred             CCEEEcccCcCccccchhccCc------c-cceEEccCC
Q 041406          255 LMSVMLSCNALSGSLPEQLSEL------P-VLIFAAEKN  286 (286)
Q Consensus       255 L~~L~l~~n~l~~~~~~~l~~l------~-L~~l~l~~N  286 (286)
                      |++|++++|++++..+..+...      + ++.+++++|
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence            8888888888775544555432      4 777777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=7.6e-28  Score=215.21  Aligned_cols=223  Identities=21%  Similarity=0.189  Sum_probs=171.6

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..+..+..+++|  |++++|.+.+..|..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            68899999999998888899999999  9999999998889999999999999999999998666678899999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.+.+..+..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-----HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-----TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeC-----hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            99998777888889999999999999887543     4567777888888888887775555567777777777777777


Q ss_pred             CCcccchhhhCCCCCCEEEccc------------------------ccccccCCccCCCCCCCCEEEcccCcCccccchh
Q 041406          217 LKCSVPKAIGELRKLGILNLGS------------------------TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQ  272 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~------------------------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  272 (286)
                      +.+..+..+..+++|++|++++                        |.+++..+..+..+++|++|++++|++++..+..
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence            7655444555555555555554                        5554222234566677777777777777555556


Q ss_pred             ccCcc-cceEEccCC
Q 041406          273 LSELP-VLIFAAEKN  286 (286)
Q Consensus       273 l~~l~-L~~l~l~~N  286 (286)
                      +..++ |++|++++|
T Consensus       268 ~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          268 LHELLRLQEIQLVGG  282 (477)
T ss_dssp             CTTCTTCCEEECCSS
T ss_pred             ccccccCCEEECCCC
Confidence            67777 777777665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.1e-27  Score=219.86  Aligned_cols=222  Identities=19%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406           60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS  137 (286)
Q Consensus        60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  137 (286)
                      ++.|++++|.+.+..+..+..+++|  |++++|.+.+..|..|+.+++|++|++++|.++...+..|..+++|++|++++
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence            3444444444444433444444444  44444444444444444445555555555544443333344445555555555


Q ss_pred             CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc------------cccC---------------------CCCCC
Q 041406          138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP------------EIGE---------------------LSLLE  184 (286)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~------------~~~~---------------------l~~L~  184 (286)
                      |.+++..|..+..+++|+.|++++|.+.+... ..++.            .+..                     .++|+
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~  235 (597)
T 3oja_B          157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT  235 (597)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred             CcCCCCChhhhhcCCcCcEEECcCCCCCCcCh-hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence            55544444444445555555555554432110 00000            0000                     01222


Q ss_pred             EEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406          185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA  264 (286)
Q Consensus       185 ~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  264 (286)
                      .|++++|.+++  +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.
T Consensus       236 ~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             EEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred             EEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence            22333333322  2335556667777777777766666677777777777777777763 45555566777777777777


Q ss_pred             CccccchhccCcc-cceEEccCC
Q 041406          265 LSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       265 l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ++ .+|..+..++ |+.|++++|
T Consensus       313 l~-~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          313 LL-HVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             CC-CCGGGHHHHTTCSEEECCSS
T ss_pred             CC-ccCcccccCCCCCEEECCCC
Confidence            76 5666666666 666666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=4.1e-27  Score=216.92  Aligned_cols=107  Identities=25%  Similarity=0.330  Sum_probs=84.0

Q ss_pred             CCCCCEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEE
Q 041406          180 LSLLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSV  258 (286)
Q Consensus       180 l~~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  258 (286)
                      ++.+++|++++|.+. +..|..+..+++|++|++++|.+++..|..|+.+++|++|+|++|++++..+..+..+++|++|
T Consensus       468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  547 (635)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred             chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence            344555555555432 2355667778888888888888887778888888899999999998887777778888899999


Q ss_pred             EcccCcCccccchhccCcc--cceEEccCC
Q 041406          259 MLSCNALSGSLPEQLSELP--VLIFAAEKN  286 (286)
Q Consensus       259 ~l~~n~l~~~~~~~l~~l~--L~~l~l~~N  286 (286)
                      ++++|++++..|+.+..++  |++|++++|
T Consensus       548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             ECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             ECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence            9999999888888888884  889988887

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=3.8e-27  Score=205.42  Aligned_cols=223  Identities=19%  Similarity=0.161  Sum_probs=116.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..+..+..+++|  |++++|.+.+..|..++.+++|++|++++|.++...+..|..+++|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            34455555555554444445555555  5555555555445555555555555555555554333334555555555555


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc------------cccC---------------------CCCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP------------EIGE---------------------LSLL  183 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~------------~~~~---------------------l~~L  183 (286)
                      +|.+++..+..+..+++|++|++++|.+++... ..++.            .+..                     .++|
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L  228 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  228 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred             CCccCccChhhccCCCCCCEEECCCCcCCcccc-ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence            555554444445555555555555555543110 00000            0000                     0123


Q ss_pred             CEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccC
Q 041406          184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCN  263 (286)
Q Consensus       184 ~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  263 (286)
                      ++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++..+..+++|++|++++|
T Consensus       229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred             cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence            3333333333321  234455666667777776665556666667777777777776663 4444556667777777777


Q ss_pred             cCccccchhccCcc-cceEEccCC
Q 041406          264 ALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       264 ~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++ .+|..+..++ |++|++++|
T Consensus       306 ~l~-~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          306 HLL-HVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             CCC-CCGGGHHHHTTCSEEECCSS
T ss_pred             cce-ecCccccccCcCCEEECCCC
Confidence            666 5555555566 666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.9e-27  Score=202.63  Aligned_cols=199  Identities=22%  Similarity=0.325  Sum_probs=186.4

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCcccccc---------C
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV---------L  127 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---------l  127 (286)
                      +++.|++++|.+. .+|..+..+++|  |++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..         +
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            7999999999999 889999999999  999999998 78999999999999999999888888877654         9


Q ss_pred             CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC
Q 041406          128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL  207 (286)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L  207 (286)
                      ++|++|++++|.++ .+|..+..+++|++|++++|.+.+      +|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence            99999999999999 889999999999999999999974      46789999999999999999999999999999999


Q ss_pred             CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      ++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988766

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=7e-27  Score=214.78  Aligned_cols=223  Identities=22%  Similarity=0.212  Sum_probs=118.8

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccch-hhcCCCCCCEEEccCCCCCCCC--ccccccCCCCCEE
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSR-QVSNLKRLKQLSLGENQLSDFV--PSQLGVLTQLETL  133 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L  133 (286)
                      +++.|++++|.+.+..|..+..++.|  +++++|.+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|++|
T Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  381 (606)
T 3t6q_A          302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL  381 (606)
T ss_dssp             TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred             cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence            34444444444444434444444444  44444444333322 2444445555555555444332  3344555555555


Q ss_pred             ecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcc
Q 041406          134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLS  213 (286)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~  213 (286)
                      ++++|.+.+..|..+..+++|++|++++|.+.+..+    +..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ  457 (606)
T ss_dssp             ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred             ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc----chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence            555555554445555555555555555555543221    2235556666666666666665555556666666666666


Q ss_pred             cCCCCcc---cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          214 ENPLKCS---VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       214 ~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +|.+++.   .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|+.+..++ | +|++++|
T Consensus       458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            6666542   123455566666666666666655555666666666666666666655556666665 5 5655554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=5e-27  Score=209.91  Aligned_cols=228  Identities=20%  Similarity=0.187  Sum_probs=140.5

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+|++|.+.+..|..+..+++|  |++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  136 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG  136 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence            67778888877777777777777777  7777777765555566777777777777777776666666677777777777


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCC-------------------CCCCccccCCCC---------------
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD-------------------KLLPPEIGELSL---------------  182 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-------------------~~~~~~~~~l~~---------------  182 (286)
                      +|.+.+..+..+..+++|+.|++++|.+++..+.                   ...+..+..+++               
T Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~  216 (477)
T 2id5_A          137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM  216 (477)
T ss_dssp             CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred             CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence            7776655555666666666666666655432100                   000112333333               


Q ss_pred             ---------CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCC
Q 041406          183 ---------LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE  253 (286)
Q Consensus       183 ---------L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  253 (286)
                               |++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..++
T Consensus       217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  296 (477)
T 2id5_A          217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN  296 (477)
T ss_dssp             CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred             CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence                     33333334444422223455556666666666666644445556666666666666666665566666677


Q ss_pred             CCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          254 NLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       254 ~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +|++|++++|++++..+..+..++ |+.|++++|
T Consensus       297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             cCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            777777777777654445566666 777777665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=7.4e-27  Score=214.63  Aligned_cols=222  Identities=20%  Similarity=0.184  Sum_probs=158.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      .++.|++++|.+++..|.++..+++|  |++++|.+.+..|..|+++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            78999999999998888889999999  9999999988888889999999999999999988778888999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCC--EEEccc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS--MLDLSE  214 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~--~L~l~~  214 (286)
                      +|.+++..+..+..+++|++|++++|.+.+...    | .+..+++|++|++++|.+++..|..+..+++|+  .|++++
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~----~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKL----P-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC----C-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCc----c-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence            999886556678888889999998888865321    2 222366666666666666655555555555555  455555


Q ss_pred             CCCCcc--------------------------------------------------------------------------
Q 041406          215 NPLKCS--------------------------------------------------------------------------  220 (286)
Q Consensus       215 n~l~~~--------------------------------------------------------------------------  220 (286)
                      |.+++.                                                                          
T Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            544322                                                                          


Q ss_pred             -cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          221 -VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       221 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                       .+..++.+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..++ |++|++++|
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred             cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence             2223445566666666666666 5566666666666666666666655455555555 666555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=6.9e-27  Score=203.82  Aligned_cols=216  Identities=19%  Similarity=0.169  Sum_probs=180.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+.+..|..+..+++|  |++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            89999999999998888889999999  9999999986555567999999999999999998778889999999999999


Q ss_pred             CCCCCCCCCcccCCC-------------------------------------CCCCEEEccCCccccccCCCCCCccccC
Q 041406          137 SNSFTGEIPSELGKL-------------------------------------KNLKTLDLSGNEFNGTVRDKLLPPEIGE  179 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l-------------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~  179 (286)
                      +|.+++.....+..+                                     ++|+.|++++|.+.+       ...+..
T Consensus       174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-------~~~l~~  246 (390)
T 3o6n_A          174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-------TAWLLN  246 (390)
T ss_dssp             SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-------CGGGGG
T ss_pred             CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-------cHHHcC
Confidence            999985322222111                                     134444444444432       256788


Q ss_pred             CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 041406          180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM  259 (286)
Q Consensus       180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  259 (286)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.++ .++..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence            999999999999999888999999999999999999998 46677778999999999999998 6777788899999999


Q ss_pred             cccCcCccccchhccCcc-cceEEccCC
Q 041406          260 LSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       260 l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++|+++ .++  +..++ |++|++++|
T Consensus       325 L~~N~i~-~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          325 LDHNSIV-TLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CCSSCCC-CCC--CCTTCCCSEEECCSS
T ss_pred             CCCCccc-eeC--chhhccCCEEEcCCC
Confidence            9999998 444  67788 999999987

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=5.2e-27  Score=223.23  Aligned_cols=142  Identities=24%  Similarity=0.284  Sum_probs=82.5

Q ss_pred             CCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCcccc-chhhcCCCCCCEEEccCCCCCCCCcccc
Q 041406           48 CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQL-SRQVSNLKRLKQLSLGENQLSDFVPSQL  124 (286)
Q Consensus        48 c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~  124 (286)
                      |.|..|.+.+.+++.|+|++|.+++..+..+..+++|  |++++|...+.+ |..|+++++|++|++++|.+.+..|..|
T Consensus        14 ~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~   93 (844)
T 3j0a_A           14 CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF   93 (844)
T ss_dssp             CCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred             CCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence            4455555533477777887777777666666666666  666666544444 5556666666666666666666556666


Q ss_pred             ccCCCCCEEecCCCCCCCCCCcc--cCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcc
Q 041406          125 GVLTQLETLSLGSNSFTGEIPSE--LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSI  193 (286)
Q Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~  193 (286)
                      ..+++|++|++++|.+++..+..  +..+++|++|++++|.+.+..+    +..+.++++|++|++++|.+
T Consensus        94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~----~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL----HPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC----CGGGGTCSSCCEEEEESSCC
T ss_pred             cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc----chhHhhCCCCCEEECCCCcC
Confidence            66666666666666665444432  5555566666666555543221    23344444444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=1e-26  Score=213.39  Aligned_cols=216  Identities=19%  Similarity=0.164  Sum_probs=182.5

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+|++|.+.+..|..+..+++|  |++++|.+.+..+..|+.+++|++|++++|.+++..|..|..+++|++|+++
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            89999999999999888889999999  9999999987666668999999999999999999888889999999999999


Q ss_pred             CCCCCCCCCcccCCC-------------------------------------CCCCEEEccCCccccccCCCCCCccccC
Q 041406          137 SNSFTGEIPSELGKL-------------------------------------KNLKTLDLSGNEFNGTVRDKLLPPEIGE  179 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l-------------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~  179 (286)
                      +|.+++.....+..+                                     ++|+.|++++|.+++       +..+..
T Consensus       180 ~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-------~~~l~~  252 (597)
T 3oja_B          180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-------TAWLLN  252 (597)
T ss_dssp             TSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-------CGGGGG
T ss_pred             CCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-------Chhhcc
Confidence            999985422222111                                     124444444444432       356888


Q ss_pred             CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 041406          180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM  259 (286)
Q Consensus       180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  259 (286)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|++|+
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence            9999999999999998889999999999999999999984 6777788999999999999998 6787788899999999


Q ss_pred             cccCcCccccchhccCcc-cceEEccCC
Q 041406          260 LSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       260 l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++|.+++ ++  +..++ |+.|++++|
T Consensus       331 L~~N~l~~-~~--~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          331 LDHNSIVT-LK--LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             CCSSCCCC-CC--CCTTCCCSEEECCSS
T ss_pred             CCCCCCCC-cC--hhhcCCCCEEEeeCC
Confidence            99999984 33  67788 999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=2.9e-27  Score=214.82  Aligned_cols=142  Identities=22%  Similarity=0.221  Sum_probs=123.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..|..+..+++|  |++++|.+.+..|..|..+++|++|++++|.+++..+..|+.+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            79999999999998888899999999  9999999998888999999999999999999999777779999999999999


Q ss_pred             CCCCCC-CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCC
Q 041406          137 SNSFTG-EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKL  204 (286)
Q Consensus       137 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~  204 (286)
                      +|.+++ ..|..+..+++|++|++++|.+.+.++    +..+.++++|++|++++|.+.+..|..+..+
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR----RIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccC----HhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            999985 356788999999999999998544443    3567888899999999998887777665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=8.2e-28  Score=222.05  Aligned_cols=218  Identities=18%  Similarity=0.286  Sum_probs=178.8

Q ss_pred             CEEEEEcCCCCcccc-----------------cCcccc--ccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-C
Q 041406           59 RVIWLVLPTHSLKGP-----------------LSPSLF--FLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-L  116 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~-----------------~~~~~~--~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l  116 (286)
                      +++.|++++|.++|.                 +|..+.  .+++|  |++++|.+.+.+|..++++++|++|++++|. +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            899999999999986                 999998  99999  9999999999999999999999999999998 8


Q ss_pred             CC-CCccccccC------CCCCEEecCCCCCCCCCCc--ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEE
Q 041406          117 SD-FVPSQLGVL------TQLETLSLGSNSFTGEIPS--ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS  187 (286)
Q Consensus       117 ~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~  187 (286)
                      ++ .+|..++.+      ++|++|++++|.++ .+|.  .+..+++|++|++++|.+.|.+     | .+..+++|++|+
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i-----p-~~~~l~~L~~L~  359 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL-----P-AFGSEIKLASLN  359 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC-----C-CCEEEEEESEEE
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch-----h-hhCCCCCCCEEE
Confidence            87 788888776      99999999999999 8888  8999999999999999998665     4 667777788888


Q ss_pred             ccCCcccccCChhccCCCC-CCEEEcccCCCCcccchhhhCCC--CCCEEEcccccccccCCccCC-------CCCCCCE
Q 041406          188 SPSCSITGPLPEELSKLKF-LSMLDLSENPLKCSVPKAIGELR--KLGILNLGSTQLNGSIPAELG-------KCENLMS  257 (286)
Q Consensus       188 l~~n~~~~~~p~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~  257 (286)
                      +++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+  +|++|++++|.+++.+|..+.       .+++|++
T Consensus       360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            8888777 67777777777 888888888877 6676665543  777778877777777776666       5667777


Q ss_pred             EEcccCcCccccch-hccCcc-cceEEccCC
Q 041406          258 VMLSCNALSGSLPE-QLSELP-VLIFAAEKN  286 (286)
Q Consensus       258 L~l~~n~l~~~~~~-~l~~l~-L~~l~l~~N  286 (286)
                      |++++|+++ .+|. .+..++ |++|++++|
T Consensus       438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          438 INLSNNQIS-KFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             EECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred             EECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence            777777777 4554 344566 777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.8e-26  Score=214.84  Aligned_cols=222  Identities=26%  Similarity=0.228  Sum_probs=163.3

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..+..+..+++|  +++++|.+.+..|..|+++++|++|++++|.++...+..|..+++|++|+++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            78999999999988777788889888  9999999988888889999999999999999887655678889999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhcc--CCCCCCEEEccc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS--KLKFLSMLDLSE  214 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~--~~~~L~~L~l~~  214 (286)
                      +|.+++..+..+..+++|++|++++|.+.+..     |..+..+++|++|++++|.+++..+..+.  .+++|++|++++
T Consensus       106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-----LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-----CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             CCccCccChhHccccCCCCEEECCCCcccccC-----chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            99988666677888999999999999887543     45667777888888888777755444332  345666666666


Q ss_pred             CCCCcccch---------------------------------------------------hhhCCC--CCCEEEcccccc
Q 041406          215 NPLKCSVPK---------------------------------------------------AIGELR--KLGILNLGSTQL  241 (286)
Q Consensus       215 n~l~~~~~~---------------------------------------------------~~~~l~--~L~~L~L~~n~l  241 (286)
                      |.+++..|.                                                   .+..++  +|++|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            666544333                                                   333332  366666666666


Q ss_pred             cccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406          242 NGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                      ++..+..+..+++|++|++++|++++..|..+..++ |++|++++
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence            655555666666666666666666666666666666 66666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=6.6e-26  Score=193.27  Aligned_cols=203  Identities=21%  Similarity=0.262  Sum_probs=137.0

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..|..+..+++|  |++++|.+. .+|..+.  ++|++|++++|.+++..+..+..+++|++|+++
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A           77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence            79999999999998888899999998  899999886 4454433  678888888888777666667777888888888


Q ss_pred             CCCCCC--CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406          137 SNSFTG--EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE  214 (286)
Q Consensus       137 ~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~  214 (286)
                      +|.+..  ..+..+..+++|++|++++|.++.      +|..+.  ++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCcccc------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            877752  455667777777777777777653      222222  5566666666666655555566666666666666


Q ss_pred             CCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhc
Q 041406          215 NPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL  273 (286)
Q Consensus       215 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  273 (286)
                      |.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            6666544445566666666666666665 555556666666666666666654333333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.6e-28  Score=205.08  Aligned_cols=218  Identities=23%  Similarity=0.219  Sum_probs=153.7

Q ss_pred             EEEEEcCCCCc-ccccCcccc-------ccccc--cccCCCCCccccchhh--cCCCCCCEEEccCCCCCCCCccccccC
Q 041406           60 VIWLVLPTHSL-KGPLSPSLF-------FLSSL--SDLSQNPLFGQLSRQV--SNLKRLKQLSLGENQLSDFVPSQLGVL  127 (286)
Q Consensus        60 l~~l~l~~~~l-~~~~~~~~~-------~l~~l--L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l  127 (286)
                      ++.|++++|.+ .+.+|..+.       .++++  |++++|.+.+.+|..+  ..+++|++|++++|.+++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            34445555555 233444333       46666  7788888877777765  7778888888888888775 6666665


Q ss_pred             -----CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccc--cCCCCCCEEEccCCcccc--cCC
Q 041406          128 -----TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI--GELSLLEIFSSPSCSITG--PLP  198 (286)
Q Consensus       128 -----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~--~~p  198 (286)
                           ++|++|++++|++.+..+..+..+++|++|++++|.+.+..+   ++..+  ..+++|++|++++|.+++  .++
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  220 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG---LISALCPLKFPTLQVLALRNAGMETPSGVC  220 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---HHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH---HHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence                 788888888888876666778888888888888887654321   12233  677888888888888772  122


Q ss_pred             -hhccCCCCCCEEEcccCCCCcccc-hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCc
Q 041406          199 -EELSKLKFLSMLDLSENPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSEL  276 (286)
Q Consensus       199 -~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  276 (286)
                       ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+
T Consensus       221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l  295 (312)
T 1wwl_A          221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL  295 (312)
T ss_dssp             HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred             HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence             334567788888888888876553 44556788888888888887 6776665  7888888888888854 65 7788


Q ss_pred             c-cceEEccCC
Q 041406          277 P-VLIFAAEKN  286 (286)
Q Consensus       277 ~-L~~l~l~~N  286 (286)
                      + |++|++++|
T Consensus       296 ~~L~~L~L~~N  306 (312)
T 1wwl_A          296 PQVGNLSLKGN  306 (312)
T ss_dssp             CEEEEEECTTC
T ss_pred             CCCCEEeccCC
Confidence            8 888888877

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.1e-26  Score=194.28  Aligned_cols=218  Identities=21%  Similarity=0.184  Sum_probs=189.0

Q ss_pred             EEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC--CccccccCCCCCEEecC
Q 041406           61 IWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF--VPSQLGVLTQLETLSLG  136 (286)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~  136 (286)
                      +.+++++++++ .+|..+.  +.+  +++++|.+....+..|.++++|++|++++|.++..  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            47889988887 4565544  455  89999999865556689999999999999998853  25667789999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.+. .+|..+..+++|++|++++|.+.+..+    ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTT----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCccccccc----chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            99998 677788999999999999999875331    2468889999999999999998888889999999999999999


Q ss_pred             CCc-ccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          217 LKC-SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       217 l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |++|++++|
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            986 5788899999999999999999988888899999999999999999976666889999 999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9.8e-26  Score=199.57  Aligned_cols=217  Identities=18%  Similarity=0.196  Sum_probs=186.2

Q ss_pred             EEEcCCCCcccccCccccccccccccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCC
Q 041406           62 WLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT  141 (286)
Q Consensus        62 ~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  141 (286)
                      .++..+.+++ .+|..+..-...|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|.++
T Consensus        47 ~v~c~~~~l~-~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             EEECCSCCCS-SCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             EEEeCCCCcC-cCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence            4445555555 566666533333999999999888899999999999999999999887889999999999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC-ChhccCCCCCCEEEcccCCCCcc
Q 041406          142 GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL-PEELSKLKFLSMLDLSENPLKCS  220 (286)
Q Consensus       142 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~~~~L~~L~l~~n~l~~~  220 (286)
                      ...+..+..+++|++|++++|.+....     +..+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++ .
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIP-----SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEEC-----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             eeCHhHhhccccCceeeCCCCcccccC-----HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            665667999999999999999997433     457889999999999996544444 457889999999999999998 5


Q ss_pred             cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       221 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +| .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |++|++++|
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            55 478899999999999999988899999999999999999999988888999999 999999987

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=208.33  Aligned_cols=104  Identities=23%  Similarity=0.281  Sum_probs=85.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..|..+..+++|  |++++|.+.+..|..|+++++|++|++++|.++. +|..  .+++|++|+++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEecc
Confidence            78888888888887777788888888  8888888888878888888888888888888885 5554  78888888888


Q ss_pred             CCCCCC-CCCcccCCCCCCCEEEccCCccc
Q 041406          137 SNSFTG-EIPSELGKLKNLKTLDLSGNEFN  165 (286)
Q Consensus       137 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~  165 (286)
                      +|.+++ .+|..++.+++|++|++++|.+.
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             CCccccccchhhhccCCcceEEEecCcccc
Confidence            888875 46778888888888888888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=6.5e-26  Score=188.52  Aligned_cols=207  Identities=24%  Similarity=0.239  Sum_probs=169.8

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|++++..+..+..+++|  +++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            68999999999987777788888888  8999999887777788899999999999999988777788899999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCC----EEEc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS----MLDL  212 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~----~L~l  212 (286)
                      +|.+.+..+..+..+++|++|++++|.+.+.    .+|..+..+++|++|++++|.+++..+..+..+++|+    .|++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCcccee----cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            9998866565788899999999999988642    2478888999999999999999876666666665666    8999


Q ss_pred             ccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406          213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP  270 (286)
Q Consensus       213 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  270 (286)
                      ++|.+++. +.......+|++|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus       185 s~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          185 SLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCCccccc-CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99999844 4444445589999999999986655667888999999999999886544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.1e-25  Score=187.21  Aligned_cols=212  Identities=23%  Similarity=0.212  Sum_probs=177.6

Q ss_pred             CCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCC
Q 041406           66 PTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGE  143 (286)
Q Consensus        66 ~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  143 (286)
                      .+.++. .+|..+.  +.+  +++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        15 ~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           15 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             TTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             cCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            333333 3455444  345  89999999888777899999999999999999987777899999999999999999977


Q ss_pred             CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc-CChhccCCCCCCEEEcccCCCCcccc
Q 041406          144 IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP-LPEELSKLKFLSMLDLSENPLKCSVP  222 (286)
Q Consensus       144 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~l~~~~~  222 (286)
                      .+..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLE-----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCST-----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ChhhhcCCccccEEECCCCCccccC-----chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            7788999999999999999987533     34688999999999999999863 68899999999999999999997666


Q ss_pred             hhhhCCCCCC----EEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          223 KAIGELRKLG----ILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       223 ~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ..+..+++|+    +|++++|.+++..+..+ ...+|++|++++|++++..+..+..++ |++|++++|
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            7777666666    89999999996555444 456899999999999965556788999 999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.3e-25  Score=199.49  Aligned_cols=214  Identities=18%  Similarity=0.172  Sum_probs=184.4

Q ss_pred             EEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCC
Q 041406           63 LVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF  140 (286)
Q Consensus        63 l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  140 (286)
                      ++.++.+++ .+|..+.  +++  |++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            444445554 4565554  344  89999999998899999999999999999999998888999999999999999999


Q ss_pred             CCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC-hhccCCCCCCEEEcccCCCCc
Q 041406          141 TGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP-EELSKLKFLSMLDLSENPLKC  219 (286)
Q Consensus       141 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~l~~  219 (286)
                      +...+..+..+++|++|++++|.+....     +..+..+++|++|++++|+..+.++ ..+..+++|++|++++|.+++
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIP-----SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEEC-----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeC-----HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            9666667899999999999999997432     4578899999999999965444444 468899999999999999984


Q ss_pred             ccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       220 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                       +| .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus       211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence             44 578899999999999999988889999999999999999999988888999999 999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=3.2e-26  Score=210.43  Aligned_cols=202  Identities=22%  Similarity=0.190  Sum_probs=146.2

Q ss_pred             ccccccc--cccCCCCCccc--cchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCC-cccCCCC
Q 041406           78 LFFLSSL--SDLSQNPLFGQ--LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLK  152 (286)
Q Consensus        78 ~~~l~~l--L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~  152 (286)
                      +..+++|  +++++|.+.+.  .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..++
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            3344555  66666666544  25666777777777777777665 44666777777777777777775555 4667777


Q ss_pred             CCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc-cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCC
Q 041406          153 NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL  231 (286)
Q Consensus       153 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  231 (286)
                      +|++|++++|.+.+..     |..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..+++|
T Consensus       425 ~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDF-----DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TCCEEECTTSCCEECC-----TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCCEEECcCCCCCccc-----hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            7777777777776433     5667777888888888888776 367777778888888888888877667777788888


Q ss_pred             CEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc--cceEEccCC
Q 041406          232 GILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP--VLIFAAEKN  286 (286)
Q Consensus       232 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--L~~l~l~~N  286 (286)
                      ++|++++|++++..|..+..+++|++|++++|+++ .+|..+..++  |+++++++|
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence            88888888887777777777888888888888877 6777677775  888888776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1.2e-25  Score=191.90  Aligned_cols=223  Identities=18%  Similarity=0.214  Sum_probs=178.0

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..|..+..+++|  |++++|.+. .+|..+.  ++|++|++++|.++...+..+..+++|++|+++
T Consensus        79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  155 (332)
T 2ft3_A           79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG  155 (332)
T ss_dssp             TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred             CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence            79999999999998888999999999  999999987 4555444  789999999999988766778899999999999


Q ss_pred             CCCCCC--CCCcccCCCCCCCEEEccCCccccccC----------------CCCCCccccCCCCCCEEEccCCcccccCC
Q 041406          137 SNSFTG--EIPSELGKLKNLKTLDLSGNEFNGTVR----------------DKLLPPEIGELSLLEIFSSPSCSITGPLP  198 (286)
Q Consensus       137 ~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~----------------~~~~~~~~~~l~~L~~L~l~~n~~~~~~p  198 (286)
                      +|.++.  ..+..+..+ +|+.|++++|.+++...                ....+..+..+++|++|++++|.+.+..+
T Consensus       156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  234 (332)
T 2ft3_A          156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN  234 (332)
T ss_dssp             SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred             CCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence            998852  445555544 45555544444432110                01224678889999999999999998777


Q ss_pred             hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC------CCCCCEEEcccCcCc--cccc
Q 041406          199 EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK------CENLMSVMLSCNALS--GSLP  270 (286)
Q Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~  270 (286)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..      .+.|+.|++++|++.  +..|
T Consensus       235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence            78999999999999999998 78888999999999999999999766665654      367999999999987  5667


Q ss_pred             hhccCcc-cceEEccCC
Q 041406          271 EQLSELP-VLIFAAEKN  286 (286)
Q Consensus       271 ~~l~~l~-L~~l~l~~N  286 (286)
                      ..+..++ |+.+++++|
T Consensus       314 ~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGTTBCCSTTEEC---
T ss_pred             ccccccchhhhhhcccc
Confidence            7899999 999999886

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.3e-27  Score=200.77  Aligned_cols=221  Identities=17%  Similarity=0.184  Sum_probs=182.9

Q ss_pred             eEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCC-ccccchhhc-------CCCCCCEEEccCCCCCCCCcc
Q 041406           53 VSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPL-FGQLSRQVS-------NLKRLKQLSLGENQLSDFVPS  122 (286)
Q Consensus        53 v~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~-~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~  122 (286)
                      +.|...+++.+++++|.+  .+|..+...  +  +++++|.+ ...+|..+.       .+++|++|++++|.+++..|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            344444788889999998  677766655  5  89999988 445676665       799999999999999988888


Q ss_pred             cc--ccCCCCCEEecCCCCCCCCCCcccCCC-----CCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406          123 QL--GVLTQLETLSLGSNSFTGEIPSELGKL-----KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG  195 (286)
Q Consensus       123 ~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (286)
                      .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..     |..+..+++|++|++++|.+.+
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS-----CEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC-----TTTCCCCSSCCEEECCSCTTCH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch-----HHHhccCCCCCEEECCCCCcCc
Confidence            76  8999999999999999966 7777766     89999999999997543     4788999999999999999876


Q ss_pred             c--CChhc--cCCCCCCEEEcccCCCCc--ccc-hhhhCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCcc
Q 041406          196 P--LPEEL--SKLKFLSMLDLSENPLKC--SVP-KAIGELRKLGILNLGSTQLNGSIP-AELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       196 ~--~p~~~--~~~~~L~~L~l~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      .  .+..+  ..+++|++|++++|.+++  .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ 
T Consensus       188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence            5  34444  789999999999999983  222 344688999999999999997664 45667899999999999999 


Q ss_pred             ccchhccCcc-cceEEccCC
Q 041406          268 SLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       268 ~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+|..+.  + |++|++++|
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYN  284 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSS
T ss_pred             hhhhhcc--CCceEEECCCC
Confidence            8888776  7 999999987

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=2.5e-25  Score=207.14  Aligned_cols=223  Identities=21%  Similarity=0.249  Sum_probs=161.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccc-hhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLS-RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  135 (286)
                      .++.+++++|.+.+..|..+..+++|  +++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            46666677777776666677777777  7777777766555 56677777777777777777666667777777777777


Q ss_pred             CCCCCC--CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC--------hhccCCC
Q 041406          136 GSNSFT--GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP--------EELSKLK  205 (286)
Q Consensus       136 ~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--------~~~~~~~  205 (286)
                      ++|.+.  +..|..+..+++|+.|++++|.+++..     +..+..+++|++|++++|.+++..+        ..+..++
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-----DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCC-----hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence            777765  456677777888888888888776432     4557778888888888888774321        2366778


Q ss_pred             CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhcc-Ccc-cceEEc
Q 041406          206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLS-ELP-VLIFAA  283 (286)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~-L~~l~l  283 (286)
                      +|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+. .++ |+.+++
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence            888888888888733334577888888888888888855555567788888888888888866666666 677 888888


Q ss_pred             cCC
Q 041406          284 EKN  286 (286)
Q Consensus       284 ~~N  286 (286)
                      ++|
T Consensus       617 ~~N  619 (680)
T 1ziw_A          617 RFN  619 (680)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=5e-26  Score=209.10  Aligned_cols=218  Identities=18%  Similarity=0.111  Sum_probs=183.6

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC--CccccccCCCCCEEe
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF--VPSQLGVLTQLETLS  134 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~  134 (286)
                      +++.|++++|.+ +.+| .+ .++++  +++++|...+..  .+..+++|++|++++|.+++.  .+..+..+++|++|+
T Consensus       308 ~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  382 (606)
T 3vq2_A          308 KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD  382 (606)
T ss_dssp             CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred             cCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence            566777777776 4555 34 66666  777777544433  456788888888888888764  367788899999999


Q ss_pred             cCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406          135 LGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE  214 (286)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~  214 (286)
                      +++|.++ .+|..+..+++|+.|++++|.+.+..+    ...+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       383 L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  457 (606)
T 3vq2_A          383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE----FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG  457 (606)
T ss_dssp             CCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTT----TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred             CCCCccc-cchhhccCCCCCCeeECCCCccCCccC----hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence            9999987 566788899999999999999876432    15788899999999999999988899999999999999999


Q ss_pred             CCCCcc-cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          215 NPLKCS-VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       215 n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      |.+++. +|..++.+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ |++|++++|
T Consensus       458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            999873 788899999999999999999988888999999999999999999988899999999 999999987

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=8.5e-26  Score=205.92  Aligned_cols=225  Identities=21%  Similarity=0.229  Sum_probs=174.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..+..+..+++|  |++++|.+.+..|..|.++++|++|++++|.++. +|..  .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECC
Confidence            79999999999998888899999999  9999999998889999999999999999999985 5554  78999999999


Q ss_pred             CCCCCC-CCCcccCCCCCCCEEEccCCccccccC--------------------CCCCCccccCCC--------------
Q 041406          137 SNSFTG-EIPSELGKLKNLKTLDLSGNEFNGTVR--------------------DKLLPPEIGELS--------------  181 (286)
Q Consensus       137 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~~~~~l~--------------  181 (286)
                      +|.+++ ..|..+..+++|++|++++|.+.+...                    ....|..+..+.              
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  209 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF  209 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence            999985 345788999999999999988753110                    001122222211              


Q ss_pred             -------------------------------------------------------------------CCCEEEccCCccc
Q 041406          182 -------------------------------------------------------------------LLEIFSSPSCSIT  194 (286)
Q Consensus       182 -------------------------------------------------------------------~L~~L~l~~n~~~  194 (286)
                                                                                         +|++|++++|.+.
T Consensus       210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  289 (562)
T 3a79_B          210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT  289 (562)
T ss_dssp             CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred             hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence                                                                               5666666666666


Q ss_pred             ccCChhc-----------------------------------------------------cCCCCCCEEEcccCCCCccc
Q 041406          195 GPLPEEL-----------------------------------------------------SKLKFLSMLDLSENPLKCSV  221 (286)
Q Consensus       195 ~~~p~~~-----------------------------------------------------~~~~~L~~L~l~~n~l~~~~  221 (286)
                      +.+|..+                                                     ..+++|++|++++|.+++..
T Consensus       290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~  369 (562)
T 3a79_B          290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV  369 (562)
T ss_dssp             SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT
T ss_pred             ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch
Confidence            5555443                                                     56678888888888888777


Q ss_pred             chhhhCCCCCCEEEcccccccc--cCCccCCCCCCCCEEEcccCcCccccch-hccCcc-cceEEccCC
Q 041406          222 PKAIGELRKLGILNLGSTQLNG--SIPAELGKCENLMSVMLSCNALSGSLPE-QLSELP-VLIFAAEKN  286 (286)
Q Consensus       222 ~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~-L~~l~l~~N  286 (286)
                      |..++.+++|++|++++|.+++  .+|..+..+++|++|++++|++++.+|. .+..++ |++|++++|
T Consensus       370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            7888888888888888888875  2345677888888888888888865665 477777 888888876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.5e-24  Score=179.79  Aligned_cols=194  Identities=23%  Similarity=0.245  Sum_probs=168.1

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ++++++.++ .+|..+.  +++++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus        21 l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           21 VDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred             EEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence            788888886 4565443  6899999999999987777899999999999999999955555678899999999999998


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      .+..     +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        98 ~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           98 QALP-----IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CCCC-----TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CcCC-----HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            7432     35678899999999999999987778889999999999999999966556688999999999999999976


Q ss_pred             CCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            666788999999999999999965556788999 999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=3.3e-25  Score=209.36  Aligned_cols=221  Identities=19%  Similarity=0.271  Sum_probs=122.5

Q ss_pred             CEEEEEcCCCC-ccc-ccCccccccc-------cc--cccCCCCCccccch--hhcCCCCCCEEEccCCCCCCCCccccc
Q 041406           59 RVIWLVLPTHS-LKG-PLSPSLFFLS-------SL--SDLSQNPLFGQLSR--QVSNLKRLKQLSLGENQLSDFVPSQLG  125 (286)
Q Consensus        59 ~l~~l~l~~~~-l~~-~~~~~~~~l~-------~l--L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~  125 (286)
                      +++.|++++|. ++| .+|..+..+.       +|  |++++|.+. .+|.  .++.+++|+.|++++|.++ .+| .+.
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~  592 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG  592 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence            56777777776 666 5666555444       55  666666665 5555  5666666666666666655 344 455


Q ss_pred             cCCCCCEEecCCCCCCCCCCcccCCCCC-CCEEEccCCccc-------------------------cccCCC--------
Q 041406          126 VLTQLETLSLGSNSFTGEIPSELGKLKN-LKTLDLSGNEFN-------------------------GTVRDK--------  171 (286)
Q Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~-------------------------~~~~~~--------  171 (286)
                      .+++|++|++++|.++ .+|..+..+++ |+.|++++|.+.                         +.++..        
T Consensus       593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            5555555555555555 44444444444 444444444443                         222110        


Q ss_pred             ---------------CCCcccc-CCCCCCEEEccCCcccccCChhccCC--------CCCCEEEcccCCCCcccchhhh-
Q 041406          172 ---------------LLPPEIG-ELSLLEIFSSPSCSITGPLPEELSKL--------KFLSMLDLSENPLKCSVPKAIG-  226 (286)
Q Consensus       172 ---------------~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~~--------~~L~~L~l~~n~l~~~~~~~~~-  226 (286)
                                     .+|..+. .+++|++|++++|.+. .+|..+...        ++|+.|++++|.++ .+|..+. 
T Consensus       672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~  749 (876)
T 4ecn_A          672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA  749 (876)
T ss_dssp             CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred             CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh
Confidence                           1222222 3455555555555555 333332221        15666666666665 5555554 


Q ss_pred             -CCCCCCEEEcccccccccCCccCCCCCCCCEEEccc------CcCccccchhccCcc-cceEEccCC
Q 041406          227 -ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC------NALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       227 -~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                       .+++|+.|+|++|.+++ +|..+..+++|+.|++++      |++.+.+|..+..++ |+.|++++|
T Consensus       750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence             66666666666666664 565566666666666654      555666666666666 666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5e-26  Score=203.69  Aligned_cols=209  Identities=22%  Similarity=0.192  Sum_probs=165.5

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+|++|.+.+..|..+..+++|  |++++|.+.+..|  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            79999999999998888889999999  9999999987666  889999999999999887632     23788888888


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhcc-CCCCCCEEEcccC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS-KLKFLSMLDLSEN  215 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~~~~L~~L~l~~n  215 (286)
                      +|.+++..+.   .+++|+.|++++|.+.+..     |..+..+++|++|++++|.+++..|..+. .+++|++|++++|
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCC-----chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            8888754332   4577888888888887543     45677788888888888888877776665 6788888888888


Q ss_pred             CCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       216 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+++. +. ...+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++ |+.|++++|
T Consensus       180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          180 FIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             ccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence            88744 22 3357888888888888885 4445777888888888888888 4777788888 888888876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5.9e-25  Score=182.41  Aligned_cols=203  Identities=21%  Similarity=0.228  Sum_probs=176.0

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+++++.+..  .+.+..++++  +++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            79999999998874  3457888888  99999998763  478899999999999999998777778999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.+++..+..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-----KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccC-----HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            99999766667899999999999999987432     4557889999999999999997777778899999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP  277 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  277 (286)
                      +++..+..+..+++|++|++++|.+.+       .++.|+.++++.|.++|.+|.+++.++
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            997777778999999999999998764       356789999999999999999887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=5.2e-25  Score=198.83  Aligned_cols=125  Identities=23%  Similarity=0.291  Sum_probs=109.8

Q ss_pred             EEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCC
Q 041406           61 IWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN  138 (286)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  138 (286)
                      +.+++++++++ .+|..+.  +++  +++++|.+.+..|..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57899999999 5777766  667  999999999888899999999999999999999987889999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406          139 SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG  195 (286)
Q Consensus       139 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (286)
                      .++ .+|..  .+++|++|++++|.+.+.    .+|..++.+++|++|++++|.+.+
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~----~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDAL----PICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSC----CCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccc----cchhhhccCCcceEEEecCcccch
Confidence            998 67765  899999999999998752    246888899999999998887753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=6e-25  Score=209.08  Aligned_cols=106  Identities=17%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML  260 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  260 (286)
                      ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            46777777777777666777777888888888888888766777888888888888888887776777888888888888


Q ss_pred             ccCcCccccchhccCcc-cceEEccCC
Q 041406          261 SCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       261 ~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ++|++.+..+..+..++ |+.|++++|
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCC
Confidence            88888766666778888 888888776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=6.8e-26  Score=194.98  Aligned_cols=229  Identities=21%  Similarity=0.264  Sum_probs=185.8

Q ss_pred             CCCCCCCCCCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCC
Q 041406           40 SWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLS  117 (286)
Q Consensus        40 ~w~~~~~~c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  117 (286)
                      .|......|.|.++ |        ++++++++ .+|..+..  .+  |++++|.+.+..+..+.++++|++|++++|.++
T Consensus        22 ~~~~~~~~C~~~~~-c--------~~~~~~l~-~iP~~~~~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~   89 (353)
T 2z80_A           22 SSNQASLSCDRNGI-C--------KGSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN   89 (353)
T ss_dssp             -----CCEECTTSE-E--------ECCSTTCS-SCCTTCCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCccCCCCCCCeE-e--------eCCCCCcc-cccccccc--cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC
Confidence            34444444888876 5        35667776 45665543  56  999999998877778999999999999999999


Q ss_pred             CCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc--cccCCCCCCEEEccCCc-cc
Q 041406          118 DFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP--EIGELSLLEIFSSPSCS-IT  194 (286)
Q Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~-~~  194 (286)
                      +..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+      +|.  .+..+++|++|++++|+ +.
T Consensus        90 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           90 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------LGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------SCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------cCchhhhccCCCCcEEECCCCcccc
Confidence            8778889999999999999999995444458999999999999999864      333  68889999999999994 66


Q ss_pred             ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc------
Q 041406          195 GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS------  268 (286)
Q Consensus       195 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~------  268 (286)
                      +..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+....+..+..+++|++|++++|.+++.      
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence            66677899999999999999999988899999999999999999998743333344578999999999998863      


Q ss_pred             -------------------------cchhccCcc-cceEEccCC
Q 041406          269 -------------------------LPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       269 -------------------------~~~~l~~l~-L~~l~l~~N  286 (286)
                                               +|+.+..++ |++|++++|
T Consensus       244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence                                     455677888 999999887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7.1e-26  Score=192.06  Aligned_cols=209  Identities=22%  Similarity=0.182  Sum_probs=124.0

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..|..+..+++|  |++++|.+.+..+  +..+++|++|++++|.+++.     ...++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECC
Confidence            57777777777776666667777777  7777777765544  66777777777777766542     123566666666


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc-cCCCCCCEEEcccC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSEN  215 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~~~~L~~L~l~~n  215 (286)
                      +|.+++..+.   .+++|+.|++++|.+++..     +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus       108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             SSCCSEEEEC---CCSSCEEEECCSSCCCSGG-----GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCccCCcCcc---ccCCCCEEECCCCCCCCcc-----chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            6666532222   2455666666666665322     2345556666666666666665444443 24556666666666


Q ss_pred             CCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       216 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+++. +. ...+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..++ |+.|++++|
T Consensus       180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          180 FIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             cCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence            66532 22 2235666666666666653 3334555666666666666666 4555566666 666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.3e-24  Score=198.03  Aligned_cols=127  Identities=22%  Similarity=0.240  Sum_probs=110.5

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      ..+.++++++++++ +|..+.  +.+  |++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            34889999999995 777665  566  9999999998888999999999999999999999888899999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG  195 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (286)
                      +|.++ .+|..  .+++|++|++++|.+.+..    +|..+.++++|++|++++|.+.+
T Consensus       109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~----~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLP----VCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             TSCCC-EECSC--CCTTCSEEECCSSCCSBCC----CCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCcCC-ccCcc--ccccCCEEECCCCCccccC----chHhhcccCcccEEecCCCcccc
Confidence            99998 67766  8999999999999987522    35788999999999999988764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=198.89  Aligned_cols=219  Identities=22%  Similarity=0.217  Sum_probs=175.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..+.++..+++|  +++++|.+.+..+..|.++++|++|++++|.++...|..|..+++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            79999999999998888889999999  9999999988888889999999999999999988777889999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC----CEEEc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL----SMLDL  212 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L----~~L~l  212 (286)
                      +|.+++..+..+..+++|++|++++|.+.+.    .+|..+.++++|++|++++|.+.+..+..+..+++|    +.+++
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~----~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCC----CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccCCCccccccccccEEecCCCcccee----cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            9999855444688999999999999988642    257889999999999999999987766666666666    67777


Q ss_pred             ccCCCCcccc----------------------------------------------------------------------
Q 041406          213 SENPLKCSVP----------------------------------------------------------------------  222 (286)
Q Consensus       213 ~~n~l~~~~~----------------------------------------------------------------------  222 (286)
                      ++|.+++..+                                                                      
T Consensus       185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            7776653322                                                                      


Q ss_pred             -----------hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          223 -----------KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       223 -----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                                 ..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..++ |+.|++++|
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n  335 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN  335 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence                       23344567777777777776 566666666 7777888777777 5554  4566 888887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=6.9e-24  Score=177.50  Aligned_cols=197  Identities=24%  Similarity=0.216  Sum_probs=171.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.+++++++++ .+|..+.  +.+  |++++|.+.+..+..|..+++|++|++++|.+++..+  ...+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred             CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence            6889999999988 4666554  345  8999999998888999999999999999999987433  2789999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.++ .+|..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP-----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCC-----SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCcCC-cCchhhccCCCCCEEECCCCcCcccC-----HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            99998 78888899999999999999997432     4678899999999999999997767778899999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      +++..+..+..+++|++|++++|.++ .+|..+...++|+.+++++|++..
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            99555556788999999999999998 788888888999999999998873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=4e-24  Score=178.94  Aligned_cols=197  Identities=27%  Similarity=0.259  Sum_probs=171.5

Q ss_pred             ccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCC
Q 041406           78 LFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLK  155 (286)
Q Consensus        78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (286)
                      +..++++  ++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++ ++.. ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCC
Confidence            5566677  889999886 4555443  689999999999998778889999999999999999984 4433 7899999


Q ss_pred             EEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEE
Q 041406          156 TLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN  235 (286)
Q Consensus       156 ~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  235 (286)
                      +|++++|.+.      .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus        81 ~L~Ls~N~l~------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           81 TLDLSHNQLQ------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             EEECCSSCCS------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCC------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            9999999986      3577888999999999999999977778899999999999999999976666788999999999


Q ss_pred             cccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++|++++..+..+..+++|++|++++|+++ .+|..+...+ |+.+++++|
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence            9999999655556788999999999999999 8898888888 999999987

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=6.7e-25  Score=200.06  Aligned_cols=195  Identities=21%  Similarity=0.189  Sum_probs=149.6

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCC--ccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFV--PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN  162 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  162 (286)
                      +++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+ ++..+..+++|+.|++++|
T Consensus       330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTS
T ss_pred             EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCC
Confidence            34444443333332  56677888888877776543  5567778888888888888773 4444778888888888888


Q ss_pred             ccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCC-cccchhhhCCCCCCEEEcccccc
Q 041406          163 EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK-CSVPKAIGELRKLGILNLGSTQL  241 (286)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l  241 (286)
                      .+.+..+    +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+
T Consensus       407 ~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l  482 (570)
T 2z63_A          407 NLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  482 (570)
T ss_dssp             EEESCTT----SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             ccccccc----hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence            8765432    245778888899999988888778888888888999999988887 46778888888999999999988


Q ss_pred             cccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          242 NGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ++..|..+..+++|++|++++|++++..|..+..++ |+.|++++|
T Consensus       483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            877788888888999999999988877667788888 899988876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=9.9e-24  Score=172.96  Aligned_cols=188  Identities=23%  Similarity=0.246  Sum_probs=127.8

Q ss_pred             CCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccc
Q 041406           48 CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG  125 (286)
Q Consensus        48 c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  125 (286)
                      |.|.|.+|.. ..+.+++++++++ .+|..+.  +.+  +++++|.+.+..+..|.++++|++|++++|.+++..+..|.
T Consensus         5 p~~~gC~C~~-~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A            5 ETVTGCTCNE-GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             HHHHSSEEEG-GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCCceEcCC-CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence            3688888953 4567889998887 4555544  234  77777777776666777777777777777777776666677


Q ss_pred             cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCC
Q 041406          126 VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK  205 (286)
Q Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~  205 (286)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++..+..+..++
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-----SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-----hhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            7777777777777777555556667777777777777765322     23456667777777777777655455566667


Q ss_pred             CCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            777777777777655555666667777777777766543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.8e-23  Score=179.24  Aligned_cols=209  Identities=25%  Similarity=0.357  Sum_probs=128.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+.+..+  +..++++  +++++|......+. +..+++|++|++++|.+....+  +..+++|++|+++
T Consensus       111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            78888888888775432  6666666  77777754444333 5666666666666666655322  5556666666666


Q ss_pred             CCCCCCCCCc---------------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406          137 SNSFTGEIPS---------------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG  195 (286)
Q Consensus       137 ~n~l~~~~~~---------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (286)
                      +|.+.+ ++.                     .+..+++|++|++++|.+++      ++. +..+++|++|++++|.+++
T Consensus       186 ~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~------~~~-~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          186 YNQIED-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD------LSP-LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             TSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCcccc-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC------Ccc-hhcCCCCCEEECCCCccCC
Confidence            665552 222                     13445555555555555542      122 5566666666666666653


Q ss_pred             cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccC
Q 041406          196 PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSE  275 (286)
Q Consensus       196 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  275 (286)
                      .  +.+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|  +..
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             C--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence            2  345666667777777776663 2 345666777777777777766666666667777777777777774444  666


Q ss_pred             cc-cceEEccCC
Q 041406          276 LP-VLIFAAEKN  286 (286)
Q Consensus       276 l~-L~~l~l~~N  286 (286)
                      ++ |++|++++|
T Consensus       332 l~~L~~L~l~~N  343 (347)
T 4fmz_A          332 LSKMDSADFANQ  343 (347)
T ss_dssp             CTTCSEESSSCC
T ss_pred             hhccceeehhhh
Confidence            66 777777765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3.1e-24  Score=181.96  Aligned_cols=210  Identities=20%  Similarity=0.141  Sum_probs=178.0

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++..+++.+.+.......+..++++  |++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            57777888888876655556667778  9999999999888999999999999999999987544  8899999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.+++ ++    ..++|++|++++|.+.+..        ...+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~--------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           89 NNYVQE-LL----VGPSIETLHAANNNISRVS--------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             SSEEEE-EE----ECTTCCEEECCSSCCSEEE--------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             CCcccc-cc----CCCCcCEEECCCCccCCcC--------ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            999873 32    4489999999999997543        2246789999999999997777788889999999999999


Q ss_pred             CCcccchhh-hCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          217 LKCSVPKAI-GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       217 l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|+++ .+|..+..++ |++|++++|
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCC
Confidence            997767766 4789999999999999854 33 345899999999999999 5666789999 999999987

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=4.7e-23  Score=176.67  Aligned_cols=214  Identities=22%  Similarity=0.319  Sum_probs=168.4

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++.  +.+..+++|  +++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|+++
T Consensus        89 ~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~  163 (347)
T 4fmz_A           89 KLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT  163 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECC
T ss_pred             cCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEec
Confidence            899999999999863  468889999  9999999976533  8899999999999997665444 48999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCC----------------CCCccccCCCCCCEEEccCCcccccCChh
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK----------------LLPPEIGELSLLEIFSSPSCSITGPLPEE  200 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----------------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~  200 (286)
                      +|.+.+ .+. +..+++|++|++++|.+.+..+..                .+ ..+..+++|++|++++|.+++. +. 
T Consensus       164 ~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~-~~-  238 (347)
T 4fmz_A          164 ESKVKD-VTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDL-SP-  238 (347)
T ss_dssp             SSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GG-
T ss_pred             CCCcCC-chh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccCCC-cc-
Confidence            999884 433 788999999999999886432100                11 1155667777888887777743 33 


Q ss_pred             ccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cc
Q 041406          201 LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VL  279 (286)
Q Consensus       201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~  279 (286)
                      +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|++++..|..+..++ |+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            7777888888888888874 3 457788888888888888874 3 3477888999999999999888888888899 99


Q ss_pred             eEEccCC
Q 041406          280 IFAAEKN  286 (286)
Q Consensus       280 ~l~l~~N  286 (286)
                      +|++++|
T Consensus       315 ~L~L~~n  321 (347)
T 4fmz_A          315 TLFLSQN  321 (347)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            9999886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=2.5e-24  Score=195.55  Aligned_cols=137  Identities=24%  Similarity=0.265  Sum_probs=112.1

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC-CccccccCCCCCEEec
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF-VPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l  135 (286)
                      +++.|++++|.+++..|..+..+++|  |++++|.+.+..+..|+++++|++|++++|.+++. .|..+..+++|++|++
T Consensus        51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  130 (549)
T 2z81_A           51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI  130 (549)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred             cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence            89999999999998888899999999  99999999988888899999999999999999863 5678899999999999


Q ss_pred             CCCCCCCCCC-cccCCCCCCCEEEccCCccccccCCC------------------CCCcc-ccCCCCCCEEEccCCcccc
Q 041406          136 GSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDK------------------LLPPE-IGELSLLEIFSSPSCSITG  195 (286)
Q Consensus       136 ~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~------------------~~~~~-~~~l~~L~~L~l~~n~~~~  195 (286)
                      ++|.+.+.+| ..+..+++|++|++++|.+.+..+..                  .+|.. +..+++|++|++++|.+.+
T Consensus       131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            9998444554 57889999999999999988654321                  00111 1246778888888877764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=5e-23  Score=170.79  Aligned_cols=184  Identities=25%  Similarity=0.246  Sum_probs=144.1

Q ss_pred             ccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCC
Q 041406           78 LFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLK  155 (286)
Q Consensus        78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (286)
                      ...++.+  +++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            4455666  77888877532  3477888888888888888763  3678888888888888888866666678888888


Q ss_pred             EEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEE
Q 041406          156 TLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN  235 (286)
Q Consensus       156 ~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  235 (286)
                      +|++++|.+.+..     +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus       113 ~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          113 ELVLVENQLQSLP-----DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             EEECTTSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCccC-----HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            8888888886432     34577888888888888888866666678888888888888888866666678888888888


Q ss_pred             cccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406          236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP  270 (286)
Q Consensus       236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  270 (286)
                      +++|.+++..+..+..+++|++|++++|++.+..|
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            88888887666667888888888888888886554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=1.3e-24  Score=183.70  Aligned_cols=221  Identities=21%  Similarity=0.176  Sum_probs=165.8

Q ss_pred             CEEEEEcCCCCcccccCcc---ccccccc--cccCCCCCccccchhh--cCCCCCCEEEccCCCCCCCCc----cccccC
Q 041406           59 RVIWLVLPTHSLKGPLSPS---LFFLSSL--SDLSQNPLFGQLSRQV--SNLKRLKQLSLGENQLSDFVP----SQLGVL  127 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~---~~~l~~l--L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~l  127 (286)
                      +++.+.+.++.+.......   +..++.+  +++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            4667777776665321111   2223446  8889999988888877  888999999999999887544    334578


Q ss_pred             CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCCh----hccC
Q 041406          128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPE----ELSK  203 (286)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~----~~~~  203 (286)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+... ...+..+..+++|++|++++|.++ .++.    .+..
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-LMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-HHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-hhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            899999999999987777788899999999999998754210 001223457888999999999886 2332    2467


Q ss_pred             CCCCCEEEcccCCCCcccchhhhCC---CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cc
Q 041406          204 LKFLSMLDLSENPLKCSVPKAIGEL---RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VL  279 (286)
Q Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~  279 (286)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++++ +|. +..++ |+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence            7899999999999987767777665   69999999999998 6777664  789999999999984 343 67778 99


Q ss_pred             eEEccCC
Q 041406          280 IFAAEKN  286 (286)
Q Consensus       280 ~l~l~~N  286 (286)
                      .|++++|
T Consensus       298 ~L~L~~N  304 (310)
T 4glp_A          298 NLTLDGN  304 (310)
T ss_dssp             CEECSST
T ss_pred             EEECcCC
Confidence            9999887

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=1.2e-23  Score=171.25  Aligned_cols=191  Identities=18%  Similarity=0.168  Sum_probs=157.1

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCC-CCCCCccccccCCCCCEEecCC-CCCCCCCCcccCCCCCCCEEEccCC
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-LSDFVPSQLGVLTQLETLSLGS-NSFTGEIPSELGKLKNLKTLDLSGN  162 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n  162 (286)
                      +++++|.+.+..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.++...+..+..+++|++|++++|
T Consensus        36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C           36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT  115 (239)
T ss_dssp             EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred             EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence            8888898887777788899999999999997 8876666888999999999998 8998666667888999999999999


Q ss_pred             ccccccCCCCCCccccCCCCCC---EEEccCC-cccccCChhccCCCCCC-EEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406          163 EFNGTVRDKLLPPEIGELSLLE---IFSSPSC-SITGPLPEELSKLKFLS-MLDLSENPLKCSVPKAIGELRKLGILNLG  237 (286)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  237 (286)
                      .+++      +|. +..+++|+   +|++++| .+.+..+..+..+++|+ +|++++|.++ .+|......++|++|+++
T Consensus       116 ~l~~------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          116 GLKM------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             CCCS------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             CCcc------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            8864      344 77777787   9999999 88866666788899999 9999999998 565544444889999999


Q ss_pred             ccc-ccccCCccCCCC-CCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          238 STQ-LNGSIPAELGKC-ENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       238 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +|+ +++..+..+..+ ++|++|++++|+++ .+|..  .++ |+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            995 886666778888 99999999999998 56654  566 888888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.91  E-value=3.3e-24  Score=194.11  Aligned_cols=206  Identities=26%  Similarity=0.344  Sum_probs=171.9

Q ss_pred             CCCCCCCCCC-----Cccce-EecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEE
Q 041406           39 VSWNKTNPHC-----YWVGV-SCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLS  110 (286)
Q Consensus        39 ~~w~~~~~~c-----~w~gv-~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~  110 (286)
                      .+|..+..+|     .|.|+ .|...+++.|++++|++++ +|..+.  +++  |++++|.+. .+|   ..+++|++|+
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~  106 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD  106 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred             HHHhccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence            4565555567     69999 7877789999999999987 777664  667  999999997 566   4578999999


Q ss_pred             ccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC
Q 041406          111 LGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS  190 (286)
Q Consensus       111 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~  190 (286)
                      +++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++      +|.   .+++|++|++++
T Consensus       107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~------lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A          107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM------LPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC------CCC---CCTTCCEEECCS
T ss_pred             ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc------CCC---cCCCcCEEECCC
Confidence            99999998 666 655  99999999999995 666   68999999999999975      233   578999999999


Q ss_pred             CcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCC-------CEEEcccccccccCCccCCCCCCCCEEEcccC
Q 041406          191 CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL-------GILNLGSTQLNGSIPAELGKCENLMSVMLSCN  263 (286)
Q Consensus       191 n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  263 (286)
                      |.+++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred             CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence            99996 676 65  89999999999998 6766 543  67       99999999999 78888888999999999999


Q ss_pred             cCccccchhccCcc
Q 041406          264 ALSGSLPEQLSELP  277 (286)
Q Consensus       264 ~l~~~~~~~l~~l~  277 (286)
                      ++++.+|..+..++
T Consensus       241 ~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          241 PLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHhh
Confidence            99999998876653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=1.4e-22  Score=180.61  Aligned_cols=205  Identities=25%  Similarity=0.324  Sum_probs=162.3

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+.+.  +.+..+++|  +++++|.+.+..+  ++.+++|+.|++++|.+++.  ..+..+++|++|+++
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  251 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence            688888888887753  346777777  8888888876655  67788888888888888763  357788889999998


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.+++..+  +..+++|+.|++++|.+.+.      +. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          252 NNQISNLAP--LSGLTKLTELKLGANQISNI------SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCCCC------GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred             CCccccchh--hhcCCCCCEEECCCCccCcc------cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence            888874433  77888899999998888642      22 7788889999999998885433  6788889999999998


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++..|  +..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|  +..++ |+.|++++|
T Consensus       321 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          321 ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence            886554  67888999999999988854  457888999999999999987666  78888 999988875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=9.9e-24  Score=188.84  Aligned_cols=190  Identities=20%  Similarity=0.132  Sum_probs=164.5

Q ss_pred             cccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCE
Q 041406           79 FFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKT  156 (286)
Q Consensus        79 ~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  156 (286)
                      ...+++  |++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++ ++    ..++|+.
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCE
Confidence            344477  9999999999888999999999999999999987554  8999999999999999883 33    3389999


Q ss_pred             EEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhh-CCCCCCEEE
Q 041406          157 LDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG-ELRKLGILN  235 (286)
Q Consensus       157 L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~  235 (286)
                      |++++|.+.+..+        ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|+
T Consensus       104 L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          104 LHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             EECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             EECcCCcCCCCCc--------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            9999999976432        2468899999999999988888899999999999999999988888776 799999999


Q ss_pred             cccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      |++|.+++..+  ...+++|++|++++|.+++ +|+.+..++ |+.|++++|
T Consensus       176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             CTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred             cCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC
Confidence            99999996532  4468999999999999995 666689999 999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=2.2e-25  Score=190.38  Aligned_cols=230  Identities=19%  Similarity=0.189  Sum_probs=119.3

Q ss_pred             CccceEecCCCEEEEEcCCCCcccccCcccccc--ccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC-Cccc
Q 041406           49 YWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFL--SSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF-VPSQ  123 (286)
Q Consensus        49 ~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l--~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~  123 (286)
                      .|.++.+++..++.++++++.+.   +..+..+  +.+  +++++|.+.+..+. +..+++|++|++++|.+... ++..
T Consensus        38 ~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           38 RWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             HHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             HHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH
Confidence            36666555445566666665554   2223333  333  55555555544433 33455666666666555433 4444


Q ss_pred             cccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCC-ccccc-CChh
Q 041406          124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSC-SITGP-LPEE  200 (286)
Q Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~  200 (286)
                      +..+++|++|++++|.+++..+..+..+++|++|++++| .+++..    ++..+..+++|++|++++| .+++. ++..
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            555566666666666555444555555566666666655 343211    2334455556666666666 55532 3444


Q ss_pred             ccCCC-CCCEEEcccC--CCC-cccchhhhCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEcccCc-Cccccchhcc
Q 041406          201 LSKLK-FLSMLDLSEN--PLK-CSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKCENLMSVMLSCNA-LSGSLPEQLS  274 (286)
Q Consensus       201 ~~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~  274 (286)
                      +..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  269 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  269 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence            55555 5666666655  333 2344445555666666666665 444444455555666666666652 2222222455


Q ss_pred             Ccc-cceEEccCC
Q 041406          275 ELP-VLIFAAEKN  286 (286)
Q Consensus       275 ~l~-L~~l~l~~N  286 (286)
                      +++ |++|++++|
T Consensus       270 ~~~~L~~L~l~~~  282 (336)
T 2ast_B          270 EIPTLKTLQVFGI  282 (336)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             cCCCCCEEeccCc
Confidence            555 666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.7e-22  Score=179.31  Aligned_cols=188  Identities=20%  Similarity=0.190  Sum_probs=105.5

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+++++.+++. | .+..++++  +++++|.+.+. +  ++.+++|++|++++|.+++. +  +..+++|++|+++
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence            566666666666653 3 46666666  66666666553 2  56666666666666666653 2  5666666666666


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCC---------------CCccccCCCCCCEEEccCCcccccCChhc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL---------------LPPEIGELSLLEIFSSPSCSITGPLPEEL  201 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---------------~~~~~~~l~~L~~L~l~~n~~~~~~p~~~  201 (286)
                      +|.+++ ++  +..+++|++|++++|.+++. +...               -...+..+++|++|++++|.+++ +|  +
T Consensus       115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l  187 (457)
T 3bz5_A          115 TNKLTK-LD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--V  187 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred             CCcCCe-ec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--c
Confidence            666663 33  55666666666666666531 0000               00023444555555555555553 23  4


Q ss_pred             cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      ..+++|+.|++++|.+++.   .++.+++|++|++++|++++ +|  +..+++|++|++++|++++
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            4555555555555555532   24555666666666666653 33  5555666666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=8.1e-24  Score=178.81  Aligned_cols=201  Identities=21%  Similarity=0.196  Sum_probs=168.4

Q ss_pred             CEEEEEcCCCCcccccCccc--cccccc--cccCCCCCccccc----hhhcCCCCCCEEEccCCCCCCCCccccccCCCC
Q 041406           59 RVIWLVLPTHSLKGPLSPSL--FFLSSL--SDLSQNPLFGQLS----RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQL  130 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~--~~l~~l--L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  130 (286)
                      +++.|++++|.+.+..|..+  ..+++|  |++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            59999999999999999988  888999  9999999987544    445679999999999999999888899999999


Q ss_pred             CEEecCCCCCCCC--C--CcccCCCCCCCEEEccCCccccccCCCCCCc-cccCCCCCCEEEccCCcccccCChhccCC-
Q 041406          131 ETLSLGSNSFTGE--I--PSELGKLKNLKTLDLSGNEFNGTVRDKLLPP-EIGELSLLEIFSSPSCSITGPLPEELSKL-  204 (286)
Q Consensus       131 ~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~-  204 (286)
                      ++|++++|++.+.  +  +..+..+++|++|++++|.++....   .+. .+..+++|++|++++|.+.+..|..+..+ 
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG---VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH---HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH---HHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            9999999998642  2  2334678999999999999863210   111 25678999999999999998778777666 


Q ss_pred             --CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          205 --KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       205 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                        ++|++|++++|.++ .+|..+.  ++|++|++++|++++ +|. +..+++|++|++++|+++.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence              69999999999999 6777664  899999999999995 344 6788999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=2.9e-23  Score=168.93  Aligned_cols=196  Identities=17%  Similarity=0.167  Sum_probs=166.5

Q ss_pred             CCEEEEEcCCCCcccccCccccccccc--cccCCCC-CccccchhhcCCCCCCEEEccC-CCCCCCCccccccCCCCCEE
Q 041406           58 GRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNP-LFGQLSRQVSNLKRLKQLSLGE-NQLSDFVPSQLGVLTQLETL  133 (286)
Q Consensus        58 ~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  133 (286)
                      .+++.|++++|++++..+..+..++++  +++++|. +....+..|.++++|++|++++ |.++...+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            379999999999998777789999999  9999997 8776667899999999999998 99998777789999999999


Q ss_pred             ecCCCCCCCCCCcccCCCCCCC---EEEccCC-ccccccCCCCCCccccCCCCCC-EEEccCCcccccCChhccCCCCCC
Q 041406          134 SLGSNSFTGEIPSELGKLKNLK---TLDLSGN-EFNGTVRDKLLPPEIGELSLLE-IFSSPSCSITGPLPEELSKLKFLS  208 (286)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~p~~~~~~~~L~  208 (286)
                      ++++|.+++ +|. +..+++|+   +|++++| .+.+..     +..+..+++|+ +|++++|.++ .+|......++|+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-----~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~  182 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-----VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD  182 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-----TTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-----cccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC
Confidence            999999984 776 88888888   9999999 886432     35688899999 9999999998 4554433338999


Q ss_pred             EEEcccCC-CCcccchhhhCC-CCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406          209 MLDLSENP-LKCSVPKAIGEL-RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA  264 (286)
Q Consensus       209 ~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  264 (286)
                      .|++++|. +++..+..+..+ ++|+.|++++|.++ .+|..  .+++|+.|+++++.
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            99999995 985556778889 99999999999998 55544  67899999998863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=1.3e-22  Score=166.27  Aligned_cols=176  Identities=20%  Similarity=0.229  Sum_probs=153.6

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ++++++.+. .+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        19 l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           19 VDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             EECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence            678888775 4565444  6899999999999998888899999999999999999987777889999999999999999


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ++..     +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus        96 ~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           96 ASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cccC-----hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            7432     46678899999999999999976666788999999999999999966666789999999999999999977


Q ss_pred             CCccCCCCCCCCEEEcccCcCccc
Q 041406          245 IPAELGKCENLMSVMLSCNALSGS  268 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~  268 (286)
                      .+..+..+++|++|++++|++.+.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            777889999999999999999865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=5.4e-25  Score=191.56  Aligned_cols=227  Identities=19%  Similarity=0.226  Sum_probs=161.7

Q ss_pred             CEEEEEcCCCCcccccC----ccccccccc--cccCCC---CCccccchhh-------cCCCCCCEEEccCCCCCC----
Q 041406           59 RVIWLVLPTHSLKGPLS----PSLFFLSSL--SDLSQN---PLFGQLSRQV-------SNLKRLKQLSLGENQLSD----  118 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~----~~~~~l~~l--L~l~~n---~~~~~~~~~l-------~~l~~L~~L~l~~n~l~~----  118 (286)
                      +++.|++++|.+.+..+    ..+..+++|  |++++|   .+.+.+|..+       ..+++|++|++++|.++.    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            68888888888876533    345567777  788775   4444555444       678888888888888877    


Q ss_pred             CCccccccCCCCCEEecCCCCCCCCCCcc----cCCC---------CCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406          119 FVPSQLGVLTQLETLSLGSNSFTGEIPSE----LGKL---------KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI  185 (286)
Q Consensus       119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~  185 (286)
                      .++..+..+++|++|++++|.++...+..    +..+         ++|++|++++|.++.... ..+...+..+++|++
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM-KEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-HHHHHHHHHCTTCCE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH-HHHHHHHHhCCCcCE
Confidence            35667778888888888888886332222    3333         788888888888762210 011245667788888


Q ss_pred             EEccCCcccc-----cCChhccCCCCCCEEEcccCCCC----cccchhhhCCCCCCEEEccccccccc----CCccC--C
Q 041406          186 FSSPSCSITG-----PLPEELSKLKFLSMLDLSENPLK----CSVPKAIGELRKLGILNLGSTQLNGS----IPAEL--G  250 (286)
Q Consensus       186 L~l~~n~~~~-----~~p~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~--~  250 (286)
                      |++++|.+..     ..+..+..+++|++|++++|.++    ..+|..+..+++|++|++++|.+++.    ++..+  +
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            8888888872     23336777888888888888885    45677778888888888888888754    44555  3


Q ss_pred             CCCCCCEEEcccCcCcc----ccchhc-cCcc-cceEEccCC
Q 041406          251 KCENLMSVMLSCNALSG----SLPEQL-SELP-VLIFAAEKN  286 (286)
Q Consensus       251 ~~~~L~~L~l~~n~l~~----~~~~~l-~~l~-L~~l~l~~N  286 (286)
                      .+++|++|++++|.+++    .+|..+ .+++ |++|++++|
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            47888888888888886    477766 5578 888888876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=2.6e-22  Score=169.43  Aligned_cols=188  Identities=22%  Similarity=0.324  Sum_probs=161.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+++++.+.. ++ .+..+++|  |++++|.+.+..+  +..+++|++|++++|.+++. + .+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence            79999999999885 34 68888888  9999999976544  89999999999999999873 3 68899999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.+++ ++. +..+++|++|++++|.+.+.      + .+..+++|++|++++|.+++. +. +..+++|+.|++++|.
T Consensus       116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~------~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          116 STQITD-VTP-LAGLSNLQVLYLDLNQITNI------S-PLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             TSCCCC-CGG-GTTCTTCCEEECCSSCCCCC------G-GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred             CCCCCC-chh-hcCCCCCCEEECCCCccCcC------c-cccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence            999984 444 88999999999999998753      2 288899999999999999853 43 8899999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      +++. +. +..+++|++|++++|.+++..  .+..+++|++|++++|++++
T Consensus       185 l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          185 ISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            9854 33 789999999999999998544  38889999999999999984

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=3.3e-22  Score=178.15  Aligned_cols=208  Identities=28%  Similarity=0.381  Sum_probs=114.4

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++..+  +..+++|  +++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  142 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS  142 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred             CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence            67888888887775433  6777777  7777777765544  6777777777777777766422  6666677777776


Q ss_pred             CCCCCCCCCc--------------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc
Q 041406          137 SNSFTGEIPS--------------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP  196 (286)
Q Consensus       137 ~n~l~~~~~~--------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  196 (286)
                      +|.+.+ ++.                    .+..+++|++|++++|.+.+.       ..+..+++|++|++++|.+.+.
T Consensus       143 ~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~  214 (466)
T 1o6v_A          143 SNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-------SVLAKLTNLESLIATNNQISDI  214 (466)
T ss_dssp             EEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-------hhhccCCCCCEEEecCCccccc
Confidence            666552 221                    133445555555555554321       2244444555555555544432


Q ss_pred             CC--------------------hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCC
Q 041406          197 LP--------------------EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLM  256 (286)
Q Consensus       197 ~p--------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  256 (286)
                      .|                    ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +. +..+++|+
T Consensus       215 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~  290 (466)
T 1o6v_A          215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALT  290 (466)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred             ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccC
Confidence            22                    123334444444444444442222  44455555555555555432 22 44555556


Q ss_pred             EEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          257 SVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       257 ~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +|++++|++.+..+  +..++ |++|++++|
T Consensus       291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          291 NLELNENQLEDISP--ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred             eEEcCCCcccCchh--hcCCCCCCEEECcCC
Confidence            66666665553222  45555 666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=3.8e-22  Score=168.41  Aligned_cols=188  Identities=24%  Similarity=0.347  Sum_probs=159.8

Q ss_pred             ccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCC
Q 041406           78 LFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLK  155 (286)
Q Consensus        78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (286)
                      ...++++  +++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence            4456677  8899998865 44 58899999999999999998544  8999999999999999984 44 688999999


Q ss_pred             EEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEE
Q 041406          156 TLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN  235 (286)
Q Consensus       156 ~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  235 (286)
                      +|++++|.+.+.      + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++. +..+++|+.|+
T Consensus       111 ~L~l~~n~l~~~------~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  179 (308)
T 1h6u_A          111 TLDLTSTQITDV------T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK  179 (308)
T ss_dssp             EEECTTSCCCCC------G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred             EEECCCCCCCCc------h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEE
Confidence            999999998752      3 48899999999999999985433  8889999999999999985 444 88999999999


Q ss_pred             cccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++|.+++. +. +..+++|++|++++|++++..  .+..++ |+.|++++|
T Consensus       180 l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          180 ADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE
T ss_pred             CCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC
Confidence            999999854 33 788999999999999999544  388899 999999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.4e-24  Score=185.00  Aligned_cols=227  Identities=20%  Similarity=0.224  Sum_probs=171.2

Q ss_pred             CEEEEEcCCCCcccccC----ccccccc-cc--cccCCCCCccccchhhcCC-----CCCCEEEccCCCCCCCCccccc-
Q 041406           59 RVIWLVLPTHSLKGPLS----PSLFFLS-SL--SDLSQNPLFGQLSRQVSNL-----KRLKQLSLGENQLSDFVPSQLG-  125 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~----~~~~~l~-~l--L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~-  125 (286)
                      +++.|++++|.+++..+    ..+..++ .+  |++++|.+.+..+..+..+     ++|++|++++|.++...+..+. 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            59999999999987666    6677777 78  9999999988777777664     8999999999999876666444 


Q ss_pred             ---cC-CCCCEEecCCCCCCCCCCcc----cCC-CCCCCEEEccCCccccccCCCCCCccccCCC-CCCEEEccCCcccc
Q 041406          126 ---VL-TQLETLSLGSNSFTGEIPSE----LGK-LKNLKTLDLSGNEFNGTVRDKLLPPEIGELS-LLEIFSSPSCSITG  195 (286)
Q Consensus       126 ---~l-~~L~~L~l~~n~l~~~~~~~----l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~  195 (286)
                         .+ ++|++|++++|.+++..+..    +.. .++|++|++++|.+.+... ..++..+..++ +|++|++++|.+++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-DELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-HHHHHHHhcCCccccEeeecCCCCch
Confidence               34 89999999999998655443    334 3689999999999874221 12344556665 89999999999986


Q ss_pred             cCChh----ccCC-CCCCEEEcccCCCCcc----cchhhhC-CCCCCEEEcccccccccCC----ccCCCCCCCCEEEcc
Q 041406          196 PLPEE----LSKL-KFLSMLDLSENPLKCS----VPKAIGE-LRKLGILNLGSTQLNGSIP----AELGKCENLMSVMLS  261 (286)
Q Consensus       196 ~~p~~----~~~~-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~  261 (286)
                      ..+..    +... ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..+    ..+..+++|++|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            65543    3444 5899999999999853    4555555 4589999999999886433    345678899999999


Q ss_pred             cCcCcc-------ccchhccCcc-cceEEccCC
Q 041406          262 CNALSG-------SLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       262 ~n~l~~-------~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +|.+.+       .+++.+..++ |+.|++++|
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            998543       2334567778 999999887

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.4e-21  Score=173.54  Aligned_cols=163  Identities=22%  Similarity=0.238  Sum_probs=105.1

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++. |  +..+++|  |++++|.+.+. +  ++.+++|++|++++|.+++. +  +..+++|++|+++
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECC
Confidence            677777777777653 2  5666666  67777766553 2  56666666666666666652 2  5566666666666


Q ss_pred             CCCCCCCCCc--------------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc
Q 041406          137 SNSFTGEIPS--------------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP  196 (286)
Q Consensus       137 ~n~l~~~~~~--------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  196 (286)
                      +|.+++. +-                    .+..+++|+.|++++|.+++      +|  +..+++|++|++++|.+++.
T Consensus       136 ~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~------l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          136 RNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE------LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             TSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC------CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce------ec--cccCCCCCEEECcCCcCCee
Confidence            6665531 10                    23445556666666666543      23  56677788888888887753


Q ss_pred             CChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccC
Q 041406          197 LPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSI  245 (286)
Q Consensus       197 ~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  245 (286)
                         .+..+++|++|++++|.+++ +|  ++.+++|++|++++|.+++..
T Consensus       207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence               36677778888888888775 45  667777888888777777543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=5e-22  Score=158.14  Aligned_cols=179  Identities=22%  Similarity=0.268  Sum_probs=80.1

Q ss_pred             CCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccc
Q 041406           48 CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG  125 (286)
Q Consensus        48 c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  125 (286)
                      |.|.++.|....          ++ .+|..+.  +++  +++++|.+.+..+..|..+++|++|++++|.++...+..|.
T Consensus         7 C~~~~v~c~~~~----------l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   73 (208)
T 2o6s_A            7 CSGTTVECYSQG----------RT-SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN   73 (208)
T ss_dssp             EETTEEECCSSC----------CS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             ECCCEEEecCCC----------cc-CCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC
Confidence            788888886432          22 1222221  122  44555554444334444555555555555555543333444


Q ss_pred             cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCC
Q 041406          126 VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK  205 (286)
Q Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~  205 (286)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++..+..+..++
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP-----DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC-----HhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence            4555555555555554333333444455555555555443211     12234444444444444444433333344444


Q ss_pred             CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC
Q 041406          206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK  251 (286)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  251 (286)
                      +|++|++++|.+.+       .+++|+.|+++.|.++|.+|..++.
T Consensus       149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence            44444444444332       1233444444444444444444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.3e-23  Score=179.32  Aligned_cols=202  Identities=23%  Similarity=0.247  Sum_probs=153.0

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccc-cchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQ-LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  135 (286)
                      +++.++++++.+.+..+. +..++++  +++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            688888888888876554 5567777  88888887765 7777888888889988888887667777888888888888


Q ss_pred             CCC-CCCC-CCCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCCC-CCCEEEccCC--ccc-ccCChhccCCCCCC
Q 041406          136 GSN-SFTG-EIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELS-LLEIFSSPSC--SIT-GPLPEELSKLKFLS  208 (286)
Q Consensus       136 ~~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n--~~~-~~~p~~~~~~~~L~  208 (286)
                      ++| .+++ .++..+..+++|++|++++| .+++..    ++..+..++ +|++|++++|  .++ +.++..+..+++|+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH----HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            888 5664 25555777888888888888 776421    245677788 8888888888  454 34566677788888


Q ss_pred             EEEcccCC-CCcccchhhhCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEcccCcCc
Q 041406          209 MLDLSENP-LKCSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       209 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++| ++
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence            88888888 666677788888888888888884 43332235677888888888888 44

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=9.4e-22  Score=180.06  Aligned_cols=73  Identities=30%  Similarity=0.309  Sum_probs=58.4

Q ss_pred             CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEc
Q 041406          205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAA  283 (286)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l  283 (286)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|++|++++|+++ .+|..+..++ |+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            567777777777763 44   45577888888888887 5565   5678999999999999 8898999999 999999


Q ss_pred             cCC
Q 041406          284 EKN  286 (286)
Q Consensus       284 ~~N  286 (286)
                      ++|
T Consensus       292 ~~N  294 (622)
T 3g06_A          292 EGN  294 (622)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            987

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.9e-23  Score=178.38  Aligned_cols=224  Identities=17%  Similarity=0.190  Sum_probs=174.9

Q ss_pred             EEEcCCCCcccccCccccccccc--cccCCCCCccccc----hhhcCCC-CCCEEEccCCCCCCCCccccccC-----CC
Q 041406           62 WLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLS----RQVSNLK-RLKQLSLGENQLSDFVPSQLGVL-----TQ  129 (286)
Q Consensus        62 ~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~  129 (286)
                      ..++++++++|.+|..+...+.+  |++++|.+.+..+    ..+..++ +|++|++++|.++...+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35789999999888877777778  9999999988776    7788898 99999999999998777777765     99


Q ss_pred             CCEEecCCCCCCCCCCcc----cCCC-CCCCEEEccCCccccccCCCCCCccccC-CCCCCEEEccCCccccc----CCh
Q 041406          130 LETLSLGSNSFTGEIPSE----LGKL-KNLKTLDLSGNEFNGTVRDKLLPPEIGE-LSLLEIFSSPSCSITGP----LPE  199 (286)
Q Consensus       130 L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~----~p~  199 (286)
                      |++|++++|.+++..+..    +..+ ++|++|++++|.+++... ..+...+.. .++|++|++++|.+.+.    ++.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            999999999998666553    4444 899999999999975331 112223444 36999999999999854    334


Q ss_pred             hccCCC-CCCEEEcccCCCCcccchhh----hCC-CCCCEEEccccccccc----CCccCCC-CCCCCEEEcccCcCccc
Q 041406          200 ELSKLK-FLSMLDLSENPLKCSVPKAI----GEL-RKLGILNLGSTQLNGS----IPAELGK-CENLMSVMLSCNALSGS  268 (286)
Q Consensus       200 ~~~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~  268 (286)
                      .+...+ +|++|++++|.+++..+..+    ... ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            455555 99999999999987666544    455 5999999999999863    4444544 45999999999999865


Q ss_pred             cc----hhccCcc-cceEEccCC
Q 041406          269 LP----EQLSELP-VLIFAAEKN  286 (286)
Q Consensus       269 ~~----~~l~~l~-L~~l~l~~N  286 (286)
                      .+    ..+..++ |++|++++|
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHhcCCCccEEEeccC
Confidence            44    3456778 999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.87  E-value=2.8e-23  Score=194.03  Aligned_cols=233  Identities=22%  Similarity=0.231  Sum_probs=135.4

Q ss_pred             cCCCChhhHHHHHHHHHhccCCCC--CCCCCCCCCC-CCccceEecCCCEEEEEcCCCCcccccCccccccccc------
Q 041406           14 ADDEQNPDEQSLISFKNALESSHN--LVSWNKTNPH-CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL------   84 (286)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~w~~~~~~-c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l------   84 (286)
                      +......+++++++++.++.+..+  ...|.....+ +.|.+.++...+++.++|.++++... +..+.....|      
T Consensus       126 s~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~  204 (727)
T 4b8c_D          126 SKSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEA-NQALLQHKKLSQYSID  204 (727)
T ss_dssp             ------CCCHHHHHHHHHHHHHHTTC------------------------------------------------------
T ss_pred             hhhccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcc-hhhHhhcCccCccccc
Confidence            344556788999999998876655  4567544444 78999999888999999999988763 3333222222      


Q ss_pred             -cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406           85 -SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE  163 (286)
Q Consensus        85 -L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  163 (286)
                       +++..|.+. ..+..+..++.|+.|++++|.+.. +|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence             334444443 457788999999999999999985 7777779999999999999999 899999999999999999999


Q ss_pred             cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCC-CCCEEEccccccc
Q 041406          164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELR-KLGILNLGSTQLN  242 (286)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  242 (286)
                      ++      .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++.+|..+.... ....+++++|.++
T Consensus       282 l~------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          282 LT------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             CS------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CC------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence            86      35788999999999999999998 7788899999999999999999988887775432 2234678888888


Q ss_pred             ccCCccCCCCCCCCEEEcccC
Q 041406          243 GSIPAELGKCENLMSVMLSCN  263 (286)
Q Consensus       243 ~~~~~~~~~~~~L~~L~l~~n  263 (286)
                      +.+|..      |..|+++.|
T Consensus       355 ~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          355 IPLPHE------RRFIEINTD  369 (727)
T ss_dssp             CCCCCC---------------
T ss_pred             CcCccc------cceeEeecc
Confidence            777754      445555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=9.4e-22  Score=174.48  Aligned_cols=203  Identities=24%  Similarity=0.285  Sum_probs=92.3

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCC-------------CEEEccCCCCCCCCccc
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRL-------------KQLSLGENQLSDFVPSQ  123 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~~~~~~  123 (286)
                      +++.++++++.+ |.+|.+++++++|  +++++|.+.+.+|..++.+.+|             ++|++++|.+++ +|..
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~   89 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL   89 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence            688888888888 7888888888888  8888888877777777665543             666666666554 2221


Q ss_pred             cccCCCCCEEecCCCCCCCCCCccc----------------CCC-CCCCEEEccCCccccccCCCCCCccccCCCCCCEE
Q 041406          124 LGVLTQLETLSLGSNSFTGEIPSEL----------------GKL-KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF  186 (286)
Q Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~l----------------~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L  186 (286)
                         .++|++|++++|.+++ +|..+                ... ++|++|++++|.+++      +| .+..+++|++|
T Consensus        90 ---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~------lp-~~~~l~~L~~L  158 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK------LP-ELQNSSFLKII  158 (454)
T ss_dssp             ---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS------CC-CCTTCTTCCEE
T ss_pred             ---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC------Cc-ccCCCCCCCEE
Confidence               1344444444444442 22211                011 345555555555432      23 35566666666


Q ss_pred             EccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       187 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      ++++|.+++ +|..+   .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|...   ++|++|++++|.+.
T Consensus       159 ~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          159 DVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE  228 (454)
T ss_dssp             ECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred             ECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence            666666653 33322   355666666665553 33 35555555555555555552 22211   24444444444444


Q ss_pred             cccchhccCcc-cceEEccCC
Q 041406          267 GSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       267 ~~~~~~l~~l~-L~~l~l~~N  286 (286)
                       .+|. +..++ |++|++++|
T Consensus       229 -~lp~-~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          229 -ELPE-LQNLPFLTTIYADNN  247 (454)
T ss_dssp             -SCCC-CTTCTTCCEEECCSS
T ss_pred             -cccc-cCCCCCCCEEECCCC
Confidence             3442 44444 555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=3.1e-21  Score=153.52  Aligned_cols=178  Identities=20%  Similarity=0.204  Sum_probs=149.1

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ++.+++.+. .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus        12 v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           12 VECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            455555554 334333  46899999999999987777789999999999999999965556678999999999999998


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ++..     +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ 
T Consensus        89 ~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-  162 (208)
T 2o6s_A           89 QSLP-----NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-  162 (208)
T ss_dssp             CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred             CccC-----HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence            7432     3557889999999999999997666678899999999999999996666668899999999999997763 


Q ss_pred             CCccCCCCCCCCEEEcccCcCccccchhccCcc
Q 041406          245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP  277 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  277 (286)
                            .++.|+.|+++.|+++|.+|+.++.++
T Consensus       163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 ------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence                  456899999999999999999888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2e-23  Score=181.61  Aligned_cols=212  Identities=19%  Similarity=0.203  Sum_probs=170.7

Q ss_pred             CEEEEEcCCC---CcccccCccc-------cccccc--cccCCCCCcc----ccchhhcCCCCCCEEEccCCCCCCCCcc
Q 041406           59 RVIWLVLPTH---SLKGPLSPSL-------FFLSSL--SDLSQNPLFG----QLSRQVSNLKRLKQLSLGENQLSDFVPS  122 (286)
Q Consensus        59 ~l~~l~l~~~---~l~~~~~~~~-------~~l~~l--L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~  122 (286)
                      +++.|++++|   .+.+.+|..+       ..+++|  |++++|.+.+    .++..+..+++|++|++++|.++...+.
T Consensus        61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  140 (386)
T 2ca6_A           61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA  140 (386)
T ss_dssp             TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence            8999999996   4556666655       677888  9999999988    5788899999999999999998754343


Q ss_pred             ccc----cC---------CCCCEEecCCCCCC-CCCC---cccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406          123 QLG----VL---------TQLETLSLGSNSFT-GEIP---SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI  185 (286)
Q Consensus       123 ~~~----~l---------~~L~~L~l~~n~l~-~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~  185 (286)
                      .+.    .+         ++|++|++++|+++ ..++   ..+..+++|+.|++++|.+.........+..+..+++|++
T Consensus       141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~  220 (386)
T 2ca6_A          141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV  220 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred             HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence            333    34         89999999999997 3344   4567889999999999998632100012337788999999


Q ss_pred             EEccCCccc----ccCChhccCCCCCCEEEcccCCCCcc----cchhhhC--CCCCCEEEcccccccc----cCCccC-C
Q 041406          186 FSSPSCSIT----GPLPEELSKLKFLSMLDLSENPLKCS----VPKAIGE--LRKLGILNLGSTQLNG----SIPAEL-G  250 (286)
Q Consensus       186 L~l~~n~~~----~~~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~  250 (286)
                      |++++|.++    +.+|..+..+++|++|++++|.+++.    ++..+..  +++|++|++++|.+++    .+|..+ .
T Consensus       221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~  300 (386)
T 2ca6_A          221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE  300 (386)
T ss_dssp             EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred             EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence            999999996    56788889999999999999999865    4566644  8999999999999997    477766 5


Q ss_pred             CCCCCCEEEcccCcCccccc
Q 041406          251 KCENLMSVMLSCNALSGSLP  270 (286)
Q Consensus       251 ~~~~L~~L~l~~n~l~~~~~  270 (286)
                      .+++|++|++++|++++..+
T Consensus       301 ~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          301 KMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCceEEEccCCcCCcchh
Confidence            58999999999999997664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=3.3e-21  Score=177.45  Aligned_cols=175  Identities=25%  Similarity=0.213  Sum_probs=91.8

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      |++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence            55666665555555556666666666666666554445555666666666666665543334455566666666666655


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccc-cCChhccCCCCCCEEEcccCCCCcccchhhhCCCC----CCEEEcccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRK----LGILNLGST  239 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~----L~~L~L~~n  239 (286)
                      ++..     +..++++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..++.+++    ...++++.|
T Consensus       137 ~~l~-----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          137 ASLE-----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             CCST-----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCC-----hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            4321     2345555666666666665543 23455555566666666666665444444443322    224555555


Q ss_pred             cccccCCccCCCCCCCCEEEcccCcC
Q 041406          240 QLNGSIPAELGKCENLMSVMLSCNAL  265 (286)
Q Consensus       240 ~l~~~~~~~~~~~~~L~~L~l~~n~l  265 (286)
                      .+....+. ......+..+++.+|..
T Consensus       212 ~l~~i~~~-~~~~~~~~~l~l~~n~~  236 (635)
T 4g8a_A          212 PMNFIQPG-AFKEIRLHKLTLRNNFD  236 (635)
T ss_dssp             CCCEECTT-TTTTCEEEEEEEESCCS
T ss_pred             cccccCcc-cccchhhhhhhhhcccc
Confidence            55532222 22223344555555533

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=4.6e-23  Score=183.26  Aligned_cols=183  Identities=18%  Similarity=0.084  Sum_probs=114.0

Q ss_pred             CCCCCEEEccCCCCCCC----CccccccCCCCCEEecCCCCCCCCC-----CcccCCCCCCCEEEccCCccccccCCCCC
Q 041406          103 LKRLKQLSLGENQLSDF----VPSQLGVLTQLETLSLGSNSFTGEI-----PSELGKLKNLKTLDLSGNEFNGTVRDKLL  173 (286)
Q Consensus       103 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  173 (286)
                      .++|++|++++|.++..    ++..+..+++|++|++++|.+....     +..+..+++|++|++++|.+++... ..+
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l  276 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-GDL  276 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-HHH
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-HHH
Confidence            33555555555555442    2334445566666666666554221     1112235666666666666543210 013


Q ss_pred             CccccCCCCCCEEEccCCcccccCChhcc-----CCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEccccccccc
Q 041406          174 PPEIGELSLLEIFSSPSCSITGPLPEELS-----KLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       174 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            45566677788888888877644333222     225788888888887754    455666778899999988888765


Q ss_pred             CCccCCC-----CCCCCEEEcccCcCcc----ccchhccCcc-cceEEccCC
Q 041406          245 IPAELGK-----CENLMSVMLSCNALSG----SLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       245 ~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+..+..     .++|++|++++|.+++    .+|..+..++ |++|++++|
T Consensus       357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence            4433322     6789999999998886    6778888888 999998886

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=2.4e-20  Score=165.47  Aligned_cols=205  Identities=26%  Similarity=0.314  Sum_probs=101.3

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++++|.+++ +|..+   ..+  +++++|.+.+ +| .++.+++|++|++++|.+++ +|..   .++|++|+++
T Consensus       154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  223 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG  223 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred             CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence            56666666666654 33322   233  5555555544 33 35555555555555555544 2221   1244444444


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCC--------------CCCCccccCCCCCCEEEccCCcccc--cCChh
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD--------------KLLPPEIGELSLLEIFSSPSCSITG--PLPEE  200 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--------------~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~  200 (286)
                      +|.++ .+|. +..+++|++|++++|.+.+....              ..+|..   +++|++|++++|.+++  .+|..
T Consensus       224 ~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~  298 (454)
T 1jl5_A          224 NNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPN  298 (454)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTT
T ss_pred             CCcCC-cccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCc
Confidence            44444 3332 44444444444444444321000              001111   2445555555555553  12211


Q ss_pred             c-------------cCC-CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          201 L-------------SKL-KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       201 ~-------------~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +             ..+ ++|++|++++|.+++ +|..   +++|++|++++|.++ .+|.   .+++|++|++++|+++
T Consensus       299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~  370 (454)
T 1jl5_A          299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR  370 (454)
T ss_dssp             CCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred             CCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCC
Confidence            1             111 366677777776663 4432   467788888888777 4555   3678888888888888


Q ss_pred             c--ccchhccCc-------------c-cceEEccCC
Q 041406          267 G--SLPEQLSEL-------------P-VLIFAAEKN  286 (286)
Q Consensus       267 ~--~~~~~l~~l-------------~-L~~l~l~~N  286 (286)
                      +  .+|..+..+             + |++|++++|
T Consensus       371 ~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN  406 (454)
T ss_dssp             SCCCCCTTCCEEECCC--------------------
T ss_pred             cCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence            7  677777776             6 888888776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=2e-20  Score=156.53  Aligned_cols=183  Identities=26%  Similarity=0.299  Sum_probs=135.8

Q ss_pred             EcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCC
Q 041406           64 VLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT  141 (286)
Q Consensus        64 ~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  141 (286)
                      .+....+.+..  .+..++++  +++++|.+... + .+..+++|+.|++++|.+++..+  +..+++|++|++++|.++
T Consensus        30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence            34444444322  23455666  78888877544 3 47788888888888888887443  788888888888888887


Q ss_pred             CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCccc
Q 041406          142 GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV  221 (286)
Q Consensus       142 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~  221 (286)
                      + ++ .+..+++|++|++++|.+.+.       ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..
T Consensus       104 ~-~~-~l~~l~~L~~L~L~~n~i~~~-------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~  172 (291)
T 1h6t_A          104 D-LS-SLKDLKKLKSLSLEHNGISDI-------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  172 (291)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCCCC-------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             C-Ch-hhccCCCCCEEECCCCcCCCC-------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence            3 33 478888888888888887641       4577788888888888888754  56778888888888888887543


Q ss_pred             chhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          222 PKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       222 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      +  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus       173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            3  7788888888888888874 44 37788888888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=9e-23  Score=181.38  Aligned_cols=227  Identities=20%  Similarity=0.141  Sum_probs=117.2

Q ss_pred             CEEEEEcCCCCccc----ccCccccccccc--cccCCCCCccccchhhc-----CCCCCCEEEccCCCCCCCC----ccc
Q 041406           59 RVIWLVLPTHSLKG----PLSPSLFFLSSL--SDLSQNPLFGQLSRQVS-----NLKRLKQLSLGENQLSDFV----PSQ  123 (286)
Q Consensus        59 ~l~~l~l~~~~l~~----~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----~~~  123 (286)
                      +++.|++++|.++.    .++..+..+++|  |++++|.+.+..+..+.     ..++|++|++++|.++...    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46677777776663    345566666666  66666666544333222     2345666666666665432    334


Q ss_pred             cccCCCCCEEecCCCCCCCCCCcccC-----CCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC-
Q 041406          124 LGVLTQLETLSLGSNSFTGEIPSELG-----KLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL-  197 (286)
Q Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-  197 (286)
                      +..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.. ...++..+..+++|++|++++|.+.+.. 
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-CRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-HHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH-HHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            44556666666666665532222221     2446666666666554310 0012344555666666666666665321 


Q ss_pred             ----ChhccCCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEcccccccccCCccCC-----CCCCCCEEEcccCc
Q 041406          198 ----PEELSKLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGSIPAELG-----KCENLMSVMLSCNA  264 (286)
Q Consensus       198 ----p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~  264 (286)
                          +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence                11222456666666666666533    344555566666666666665532222111     12355555555555


Q ss_pred             Cccc----cchhccCcc-cceEEccCC
Q 041406          265 LSGS----LPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       265 l~~~----~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++.    ++..+..++ |++|++++|
T Consensus       325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CchHHHHHHHHHHhhCCCccEEEccCC
Confidence            5433    233344444 555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=3.7e-20  Score=149.56  Aligned_cols=163  Identities=25%  Similarity=0.294  Sum_probs=120.2

Q ss_pred             CCCCCCCCCCCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCC
Q 041406           39 VSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQL  116 (286)
Q Consensus        39 ~~w~~~~~~c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  116 (286)
                      ..|......|+|.++.|...+++           .+|..+.  +.+  |++++|.+.+..+..|..+++|++|++++|.+
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~l~-----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKRHA-----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hccCCCCCEEeCCEeEccCCCcC-----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence            45555555599999999754322           3444333  445  78888888877777888888888888888888


Q ss_pred             CCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc
Q 041406          117 SDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP  196 (286)
Q Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  196 (286)
                      +...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.      .+|..+..+++|++|++++|.+.+.
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT------ELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc------ccCcccccCCCCCEEECCCCcCCcc
Confidence            7765566778888888888888888555556777888888888888875      2467777888888888888888755


Q ss_pred             CChhccCCCCCCEEEcccCCCCcc
Q 041406          197 LPEELSKLKFLSMLDLSENPLKCS  220 (286)
Q Consensus       197 ~p~~~~~~~~L~~L~l~~n~l~~~  220 (286)
                      .+..+..+++|+.|++++|.+.+.
T Consensus       151 ~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          151 PHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCCccCC
Confidence            556677788888888888887644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=3.2e-20  Score=155.33  Aligned_cols=166  Identities=28%  Similarity=0.357  Sum_probs=140.8

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|+++++.+...  +.+..++++  |++++|.+.+..+  +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            789999999998754  347888888  9999999977554  8899999999999999987 33 48899999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|.+++ + ..+..+++|+.|++++|.+++.       ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          121 HNGISD-I-NGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             TSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             CCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-------hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            999984 4 4688899999999999998642       578889999999999999986544  8889999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccc
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNG  243 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~  243 (286)
                      +++ ++ .+..+++|+.|++++|.++.
T Consensus       190 i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            984 44 48899999999999999884

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=2.2e-20  Score=160.39  Aligned_cols=227  Identities=20%  Similarity=0.183  Sum_probs=163.4

Q ss_pred             CCccceEecCC-----------CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccc-hhhcCCCCCCE-EEcc
Q 041406           48 CYWVGVSCQRG-----------RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLS-RQVSNLKRLKQ-LSLG  112 (286)
Q Consensus        48 c~w~gv~c~~~-----------~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~  112 (286)
                      |++..|.|...           +++.|+|++|.++...+.+|..+++|  |++++|.+.+.++ ..|.++++++. +.+.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            67777888632           57888899988886555578888888  8888888866655 45778887775 5566


Q ss_pred             CCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCC-CCCCEEEccC
Q 041406          113 ENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGEL-SLLEIFSSPS  190 (286)
Q Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l-~~L~~L~l~~  190 (286)
                      .|.++...|..|..+++|++|++++|.+....+..+....++..+++.++ .+. .++    +..+..+ ..++.|++++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~----~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIE----RNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EEC----TTSSTTSBSSCEEEECCS
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-ccc----ccchhhcchhhhhhcccc
Confidence            78888877778888889999999998888554445556667778888654 443 222    2344444 3688899999


Q ss_pred             CcccccCChhccCCCCCCEEEccc-CCCCcccc-hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 041406          191 CSITGPLPEELSKLKFLSMLDLSE-NPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS  268 (286)
Q Consensus       191 n~~~~~~p~~~~~~~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  268 (286)
                      |.++. ++.......+|+.+++++ |.++ .+| ..|+.+++|++|++++|+++ .+|.  ..+.+|+.|.+.++.-...
T Consensus       164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          164 NGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             SCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCC
T ss_pred             ccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCc
Confidence            99984 444444556789999975 5665 555 46788999999999999998 5554  2356777777766543436


Q ss_pred             cchhccCcc-cceEEccC
Q 041406          269 LPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       269 ~~~~l~~l~-L~~l~l~~  285 (286)
                      +|. +..++ |+.+++++
T Consensus       239 lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          239 LPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CCC-TTTCCSCCEEECSC
T ss_pred             CCC-chhCcChhhCcCCC
Confidence            774 77888 88888865

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=1.2e-19  Score=165.91  Aligned_cols=164  Identities=27%  Similarity=0.305  Sum_probs=82.4

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      |++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+
T Consensus        48 L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l  121 (605)
T 1m9s_A           48 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGI  121 (605)
T ss_dssp             CBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCC
T ss_pred             EECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCC
Confidence            44444444322 2 34555555555555555554322  4555555555555555542 22 345555555555555555


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      .+       ...+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..|  +..+++|+.|+|++|.+++ 
T Consensus       122 ~~-------l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-  189 (605)
T 1m9s_A          122 SD-------INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-  189 (605)
T ss_dssp             CC-------CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             CC-------CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence            42       12345555555555555555532  344555555555555555553333  4555555555555555553 


Q ss_pred             CCccCCCCCCCCEEEcccCcCcc
Q 041406          245 IPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      ++ .+..+++|+.|++++|++.+
T Consensus       190 l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          190 LR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CG-GGTTCTTCSEEECCSEEEEC
T ss_pred             Ch-HHccCCCCCEEEccCCcCcC
Confidence            22 34555555555555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.3e-19  Score=145.39  Aligned_cols=157  Identities=18%  Similarity=0.215  Sum_probs=135.7

Q ss_pred             CCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCC-cccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCC
Q 041406          106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE  184 (286)
Q Consensus       106 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~  184 (286)
                      -+.+++++|.++. +|..+.  ..+++|++++|.+++..+ ..+..+++|++|++++|.+++..     +..+..+++|+
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-----EGAFEGASGVN   84 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-----TTTTTTCTTCC
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-----HHHhCCCCCCC
Confidence            3589999999887 565443  457899999999996544 45789999999999999997543     45788999999


Q ss_pred             EEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406          185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA  264 (286)
Q Consensus       185 ~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  264 (286)
                      +|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            99999999998777789999999999999999998778889999999999999999998878899999999999999999


Q ss_pred             Cccccc
Q 041406          265 LSGSLP  270 (286)
Q Consensus       265 l~~~~~  270 (286)
                      +.+..+
T Consensus       165 l~c~c~  170 (220)
T 2v70_A          165 FNCNCY  170 (220)
T ss_dssp             EECSGG
T ss_pred             CcCCCc
Confidence            986543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.1e-19  Score=164.70  Aligned_cols=171  Identities=26%  Similarity=0.391  Sum_probs=145.1

Q ss_pred             cc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEcc
Q 041406           83 SL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS  160 (286)
Q Consensus        83 ~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  160 (286)
                      ++  +++++|.+.+ +|..+.  ++|++|++++|.++. +|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56  8999999976 676553  789999999999995 66   457999999999999995 777 655  99999999


Q ss_pred             CCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccc
Q 041406          161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ  240 (286)
Q Consensus       161 ~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  240 (286)
                      +|.+++      +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.
T Consensus       129 ~N~l~~------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          129 NNQLTM------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             SSCCSC------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred             CCcCCC------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence            999975      344   67899999999999995 665   57899999999999985 776 65  899999999999


Q ss_pred             ccccCCccCCCCCCC-------CEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          241 LNGSIPAELGKCENL-------MSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       241 l~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ++ .+|. +..  +|       +.|++++|+|+ .+|..+..++ |+.|++++|
T Consensus       192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             CS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred             CC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence            99 7777 554  77       99999999999 7899888899 999999988

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=1.8e-19  Score=144.65  Aligned_cols=150  Identities=18%  Similarity=0.289  Sum_probs=101.5

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ++++++.+. .+|..+.  ++++.|++++|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus        16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            456666654 3444333  5677777777777765556677777777777777777766667777777777777777777


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      +...     +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus        93 ~~l~-----~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           93 TELP-----KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccC-----HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5321     233566777777777777777666666777777777777777777555555666777777777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=1.7e-19  Score=144.77  Aligned_cols=152  Identities=20%  Similarity=0.244  Sum_probs=133.2

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCc-cccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP-SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE  163 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  163 (286)
                      +++++|.++. +|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        16 l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           16 VDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            7888888864 566543  457899999999998654 458899999999999999997777789999999999999999


Q ss_pred             cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406          164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG  243 (286)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  243 (286)
                      +++..     +..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus        93 l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           93 LENVQ-----HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCC-----GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             cCccC-----HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            97543     5678899999999999999998888999999999999999999998778999999999999999999875


Q ss_pred             c
Q 041406          244 S  244 (286)
Q Consensus       244 ~  244 (286)
                      .
T Consensus       168 ~  168 (220)
T 2v70_A          168 N  168 (220)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=2.1e-19  Score=144.26  Aligned_cols=153  Identities=20%  Similarity=0.283  Sum_probs=134.0

Q ss_pred             CEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEE
Q 041406          107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF  186 (286)
Q Consensus       107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L  186 (286)
                      +.++.+++.++. +|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+.+..     |..+..+++|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-----PDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-----TTTTTTCSSCCEE
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-----HHHhhCCcCCCEE
Confidence            678999998887 555443  68999999999999766678999999999999999997543     6789999999999


Q ss_pred             EccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       187 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      ++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999999665566788999999999999999877889999999999999999999777777889999999999999987


Q ss_pred             c
Q 041406          267 G  267 (286)
Q Consensus       267 ~  267 (286)
                      .
T Consensus       166 c  166 (220)
T 2v9t_B          166 C  166 (220)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=7.8e-20  Score=144.19  Aligned_cols=154  Identities=16%  Similarity=0.293  Sum_probs=124.8

Q ss_pred             cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC
Q 041406          101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL  180 (286)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l  180 (286)
                      ..+++|++|++++|.+.. +| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..     +..+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDK-----IPNLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGG-----SCCCTTC
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCccc-----ChhhcCC
Confidence            567889999999999885 45 5888999999999999765 33 46888999999999999987543     4678888


Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCC-CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP-LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM  259 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  259 (286)
                      ++|++|++++|.+++..|..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY  187 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence            999999999999987778888889999999999997 65 555 68888999999999999884 44 577889999999


Q ss_pred             cccCcCcc
Q 041406          260 LSCNALSG  267 (286)
Q Consensus       260 l~~n~l~~  267 (286)
                      +++|++.+
T Consensus       188 l~~N~i~~  195 (197)
T 4ezg_A          188 AFSQTIGG  195 (197)
T ss_dssp             ECBC----
T ss_pred             eeCcccCC
Confidence            99998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=1.4e-19  Score=156.07  Aligned_cols=175  Identities=24%  Similarity=0.208  Sum_probs=125.8

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccc-cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG-VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE  163 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  163 (286)
                      ++++++.+.. +|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            5677776643 555433  3578888888888876666666 78888888888888886666678888888888888888


Q ss_pred             cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhh---hCCCCCCEEEccccc
Q 041406          164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI---GELRKLGILNLGSTQ  240 (286)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~  240 (286)
                      +.+..     +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+   ..+++|+.|+|++|.
T Consensus       100 l~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          100 LHTLD-----EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCcCC-----HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            76432     3457778888888888888887767778888888888888888874333333   467888888888888


Q ss_pred             ccccCCccCCCCCC--CCEEEcccCcCcc
Q 041406          241 LNGSIPAELGKCEN--LMSVMLSCNALSG  267 (286)
Q Consensus       241 l~~~~~~~~~~~~~--L~~L~l~~n~l~~  267 (286)
                      +++..+..+..++.  ++.|++++|++..
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCccC
Confidence            87443345555665  3778888887763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.2e-19  Score=165.93  Aligned_cols=181  Identities=24%  Similarity=0.330  Sum_probs=155.3

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      +.+..+.+.+..+  +..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC
Confidence            6677777765544  46788999999999999874 3 58899999999999999985 444 88999999999999998


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      .+       +..+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+++.
T Consensus       100 ~~-------l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          100 KD-------LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CC-------CTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CC-------ChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            64       2368899999999999999985 3 4588899999999999999854  6788999999999999999965


Q ss_pred             CCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .|  +..+++|++|++++|++++ + +.+..++ |+.|++++|
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSE
T ss_pred             hh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCC
Confidence            55  8899999999999999995 4 4688999 999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=1.2e-19  Score=143.20  Aligned_cols=150  Identities=20%  Similarity=0.241  Sum_probs=133.9

Q ss_pred             cccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccC
Q 041406          124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSK  203 (286)
Q Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  203 (286)
                      ...+++|++|++++|.++ .+| .+..+++|++|++++|.+..       +..+..+++|++|++++|.+++..+..+..
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-------YNPISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-------chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence            367889999999999998 666 68899999999999997642       357889999999999999999878888999


Q ss_pred             CCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceE
Q 041406          204 LKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIF  281 (286)
Q Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l  281 (286)
                      +++|++|++++|.+++..+..++.+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..++ |++|
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL  186 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence            9999999999999998788999999999999999998 65 555 58899999999999999994 54 788899 9999


Q ss_pred             EccCC
Q 041406          282 AAEKN  286 (286)
Q Consensus       282 ~l~~N  286 (286)
                      ++++|
T Consensus       187 ~l~~N  191 (197)
T 4ezg_A          187 YAFSQ  191 (197)
T ss_dssp             EECBC
T ss_pred             EeeCc
Confidence            99987

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=5.7e-19  Score=142.55  Aligned_cols=134  Identities=24%  Similarity=0.252  Sum_probs=67.4

Q ss_pred             CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC
Q 041406          128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL  207 (286)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L  207 (286)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+....     +..+..+++|++|++++|.+++..+..+..+++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-----VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-----hhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence            44444455544444444444444445555555554443211     1233445555555555555554333444555555


Q ss_pred             CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      ++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus       115 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          115 KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            55555555555 455555555555555555555554333445555555556665555553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=2.3e-19  Score=154.65  Aligned_cols=175  Identities=25%  Similarity=0.197  Sum_probs=137.1

Q ss_pred             EEEcCCCCcccccCccccccccccccCCCCCccccchhhc-CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCC
Q 041406           62 WLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVS-NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF  140 (286)
Q Consensus        62 ~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  140 (286)
                      .+++++++++. +|..+......|++++|.+.+..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        22 ~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             EEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            45666677663 5665554333389999999887777777 889999999999999887777889999999999999999


Q ss_pred             CCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc---cCCCCCCEEEcccCCC
Q 041406          141 TGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL---SKLKFLSMLDLSENPL  217 (286)
Q Consensus       141 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~---~~~~~L~~L~l~~n~l  217 (286)
                      +...+..|..+++|+.|++++|.+.+..     |..+..+++|++|++++|.+++..+..+   ..+++|+.|++++|.+
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVD-----RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEEC-----HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            8666667888999999999999987543     5678889999999999999985433444   5688999999999999


Q ss_pred             CcccchhhhCCCC--CCEEEccccccc
Q 041406          218 KCSVPKAIGELRK--LGILNLGSTQLN  242 (286)
Q Consensus       218 ~~~~~~~~~~l~~--L~~L~L~~n~l~  242 (286)
                      +...+..+..++.  ++.|++++|.+.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            8555567777776  478899888765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=7.7e-19  Score=160.80  Aligned_cols=88  Identities=28%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML  260 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  260 (286)
                      ++|++|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            678899999998884 55   45678999999999998 5665   6789999999999999 88989999999999999


Q ss_pred             ccCcCccccchhccCcc
Q 041406          261 SCNALSGSLPEQLSELP  277 (286)
Q Consensus       261 ~~n~l~~~~~~~l~~l~  277 (286)
                      ++|++++..|..+..++
T Consensus       292 ~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          292 EGNPLSERTLQALREIT  308 (622)
T ss_dssp             CSCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhcc
Confidence            99999988887765443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=7.7e-19  Score=144.74  Aligned_cols=164  Identities=18%  Similarity=0.310  Sum_probs=120.6

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ++++.+.+.+..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+
T Consensus        24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCcc
Confidence            667777775443  46777888888888888776 34 57778888888888888874 444 77888888888888887


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      .+.      |. +.. ++|++|++++|.+++ + +.+..+++|+.|++++|.+++ ++ .+..+++|++|++++|.+++.
T Consensus        98 ~~l------~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           98 KNL------NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SCC------TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCc------Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence            642      22 222 778888888888875 3 347778888888888888874 33 577788888888888888754


Q ss_pred             CCccCCCCCCCCEEEcccCcCccc
Q 041406          245 IPAELGKCENLMSVMLSCNALSGS  268 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~  268 (286)
                        ..+..+++|+.|++++|++++.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              5577788888888888887743

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=4.7e-19  Score=152.09  Aligned_cols=210  Identities=15%  Similarity=0.121  Sum_probs=160.4

Q ss_pred             EEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCc-cccccCCCCCE-EecC
Q 041406           61 IWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP-SQLGVLTQLET-LSLG  136 (286)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~  136 (286)
                      +.++.++++++ .+|..+.  +++  |++++|+++...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45778888887 5676663  345  8999999986666789999999999999999876555 46888988876 5566


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC-CcccccCChhccCC-CCCCEEEccc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS-CSITGPLPEELSKL-KFLSMLDLSE  214 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~-~~L~~L~l~~  214 (286)
                      +|+++...|..|..+++|++|++++|.+....     +..+....++..+++.+ +.+....+..+..+ ..++.|++++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-----DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-----CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             CCcccccCchhhhhccccccccccccccccCC-----chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            78998777788999999999999999986432     23445566788888866 45664444556555 3688999999


Q ss_pred             CCCCcccchhhhCCCCCCEEEccc-ccccccCC-ccCCCCCCCCEEEcccCcCccccch-hccCcc-cceE
Q 041406          215 NPLKCSVPKAIGELRKLGILNLGS-TQLNGSIP-AELGKCENLMSVMLSCNALSGSLPE-QLSELP-VLIF  281 (286)
Q Consensus       215 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~-L~~l  281 (286)
                      |.++ .++.......+|+.+++.+ |.++ .+| ..|..+++|++||+++|+++ .+|. .+.+++ |+.+
T Consensus       164 N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l  231 (350)
T 4ay9_X          164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR  231 (350)
T ss_dssp             SCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECT
T ss_pred             cccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhc
Confidence            9998 5666666677899999975 5666 555 56789999999999999999 5654 455555 4443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.4e-17  Score=137.18  Aligned_cols=165  Identities=27%  Similarity=0.301  Sum_probs=126.2

Q ss_pred             EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406           60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS  137 (286)
Q Consensus        60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  137 (286)
                      ++.++++++.+++..  .+..++++  +++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            445556666666432  46666777  7888887754 34 57888899999999998887544  88889999999999


Q ss_pred             CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC
Q 041406          138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL  217 (286)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l  217 (286)
                      |++++ ++.. .. ++|+.|++++|.+++.       ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+
T Consensus        95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           95 NRLKN-LNGI-PS-ACLSRLFLDNNELRDT-------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             SCCSC-CTTC-CC-SSCCEEECCSSCCSBS-------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             CccCC-cCcc-cc-CcccEEEccCCccCCC-------hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            98884 4442 33 8899999999988652       3578888999999999998854 3 577888999999999998


Q ss_pred             CcccchhhhCCCCCCEEEccccccccc
Q 041406          218 KCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       218 ~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ++.  ..+..+++|+.|++++|.+++.
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccCC
Confidence            854  6678888999999999988754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=2.4e-17  Score=129.34  Aligned_cols=130  Identities=22%  Similarity=0.331  Sum_probs=94.2

Q ss_pred             CEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCc-ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406          107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPS-ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI  185 (286)
Q Consensus       107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~  185 (286)
                      +.++++++.++. +|..+.  .++++|++++|.+++..+. .+..+++|++|++++|.+++..     |..+..+++|++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-----PNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCE
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-----HhHcCCcccCCE
Confidence            677888887765 555443  2788888888888754443 3677788888888888776533     566777777888


Q ss_pred             EEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          186 FSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       186 L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      |++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            88888877766666677777788888888877766677777777777787777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=5.8e-21  Score=173.48  Aligned_cols=193  Identities=21%  Similarity=0.264  Sum_probs=148.1

Q ss_pred             cccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-------------CCCCCccccccCCCCCEEe-cCCCCCCC
Q 041406           79 FFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-------------LSDFVPSQLGVLTQLETLS-LGSNSFTG  142 (286)
Q Consensus        79 ~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~  142 (286)
                      ...+++  |++++|.+. .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            345566  788888874 678888888888888886653             4455666777777887777 4544332 


Q ss_pred             CCCc------ccCC--CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406          143 EIPS------ELGK--LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE  214 (286)
Q Consensus       143 ~~~~------~l~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~  214 (286)
                      .++.      .+..  ...|+.|++++|.+++      +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~------lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV------LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS------CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC------CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence            1110      0111  1358999999999864      455 888999999999999999 7888999999999999999


Q ss_pred             CCCCcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEEEcccCcCccccch---hccCcc-cceEEc
Q 041406          215 NPLKCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSVMLSCNALSGSLPE---QLSELP-VLIFAA  283 (286)
Q Consensus       215 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~l~-L~~l~l  283 (286)
                      |.+++ +| .++.+++|++|+|++|.+++.. |..++.+++|+.|++++|++++..|.   .+..+| |+.|++
T Consensus       496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99985 66 8899999999999999999765 88899999999999999999865442   234477 888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=1.6e-17  Score=127.52  Aligned_cols=136  Identities=24%  Similarity=0.179  Sum_probs=72.6

Q ss_pred             CCCCEEEccCCCCC-CCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCC
Q 041406          104 KRLKQLSLGENQLS-DFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL  182 (286)
Q Consensus       104 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~  182 (286)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|                         
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L-------------------------   76 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKL-------------------------   76 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEE-------------------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEE-------------------------
Confidence            45566666665555 33444455555555555555555422  334444444444                         


Q ss_pred             CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcc-cchhhhCCCCCCEEEcccccccccCC---ccCCCCCCCCEE
Q 041406          183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLNGSIP---AELGKCENLMSV  258 (286)
Q Consensus       183 L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L  258 (286)
                          ++++|.+.+.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|
T Consensus        77 ----~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           77 ----ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             ----EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             ----ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence                4444444443444454555666666666666532 11455566666666666666663332   245566666666


Q ss_pred             EcccCcCccccch
Q 041406          259 MLSCNALSGSLPE  271 (286)
Q Consensus       259 ~l~~n~l~~~~~~  271 (286)
                      ++++|.+. .+|+
T Consensus       153 ~l~~n~~~-~~~~  164 (168)
T 2ell_A          153 DGYDREDQ-EAPD  164 (168)
T ss_dssp             TTEETTSC-BCCS
T ss_pred             cCCCCChh-hccc
Confidence            66666655 4443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=7.4e-20  Score=166.19  Aligned_cols=190  Identities=20%  Similarity=0.226  Sum_probs=152.9

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCC-------------CccccchhhcCCCCCCEEE-ccCCCCCCCCcc
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNP-------------LFGQLSRQVSNLKRLKQLS-LGENQLSDFVPS  122 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~l~~~~~~  122 (286)
                      +++.|+|++|.++ .+|..++.++.|  |++++|.             ..+..|..++.+++|+.|+ ++.|.+.. ++.
T Consensus       350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L~~  427 (567)
T 1dce_A          350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-LRS  427 (567)
T ss_dssp             TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-HHH
T ss_pred             cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-hhh
Confidence            4567888888886 789999999999  8876664             5667788888888898888 55553322 110


Q ss_pred             ------cccc--CCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc
Q 041406          123 ------QLGV--LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT  194 (286)
Q Consensus       123 ------~~~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (286)
                            .+..  ...|+.|++++|.++ .+|. +..+++|+.|++++|.++      .+|..++.+++|++|++++|.++
T Consensus       428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          428 KFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR------ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC------CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             hhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc------ccchhhhcCCCCCEEECCCCCCC
Confidence                  1111  136999999999999 4776 999999999999999986      35789999999999999999999


Q ss_pred             ccCChhccCCCCCCEEEcccCCCCccc-chhhhCCCCCCEEEcccccccccCCcc---CCCCCCCCEEEc
Q 041406          195 GPLPEELSKLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLGSTQLNGSIPAE---LGKCENLMSVML  260 (286)
Q Consensus       195 ~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~l  260 (286)
                      + +| .+..+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++..|..   +..+++|+.|++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            6 67 7999999999999999999766 899999999999999999999654422   233789999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=5.4e-17  Score=124.47  Aligned_cols=131  Identities=24%  Similarity=0.266  Sum_probs=98.5

Q ss_pred             ccc--cccCCCCCc-cccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEE
Q 041406           82 SSL--SDLSQNPLF-GQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLD  158 (286)
Q Consensus        82 ~~l--L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  158 (286)
                      +.+  +++++|.+. +.+|..+..+++|++|++++|.++..  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            455  899999997 67888889999999999999999885  7788999999999999999976777777788888888


Q ss_pred             ccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC---hhccCCCCCCEEEcccCCCC
Q 041406          159 LSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP---EELSKLKFLSMLDLSENPLK  218 (286)
Q Consensus       159 l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~~~~L~~L~l~~n~l~  218 (286)
                      +++|.+++..    .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDIS----TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSG----GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcch----hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            8888876421    01455666666666666666664333   24555566666666665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.1e-16  Score=125.47  Aligned_cols=133  Identities=23%  Similarity=0.287  Sum_probs=118.0

Q ss_pred             CEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEE
Q 041406          131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML  210 (286)
Q Consensus       131 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L  210 (286)
                      ++++++++.++ .+|..+..  ++++|++++|.+.+..+    ...+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            78999999997 78876544  89999999999975431    1248899999999999999998889999999999999


Q ss_pred             EcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406          211 DLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP  270 (286)
Q Consensus       211 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  270 (286)
                      ++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999998777789999999999999999999889999999999999999999997654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=4.2e-17  Score=122.53  Aligned_cols=37  Identities=22%  Similarity=0.204  Sum_probs=14.9

Q ss_pred             CCCEEEccCCCCC-CCCccccccCCCCCEEecCCCCCC
Q 041406          105 RLKQLSLGENQLS-DFVPSQLGVLTQLETLSLGSNSFT  141 (286)
Q Consensus       105 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  141 (286)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~   55 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT   55 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence            3444444444443 223333333444444444444333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=6.1e-17  Score=121.67  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=52.6

Q ss_pred             CCCCEEecCCCCCC-CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCC
Q 041406          128 TQLETLSLGSNSFT-GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF  206 (286)
Q Consensus       128 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~  206 (286)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+.+.       ..+..+++|++|++++|.+++.+|..+..+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            45666666666665 45555555566666666666555421       23444444445555444444334444444444


Q ss_pred             CCEEEcccCCCCcc-cchhhhCCCCCCEEEccccccc
Q 041406          207 LSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       207 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      |++|++++|.+++. .+..+..+++|++|++++|.++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            44444444444421 1233444444444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=5.2e-16  Score=121.75  Aligned_cols=127  Identities=24%  Similarity=0.336  Sum_probs=88.8

Q ss_pred             CEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEE
Q 041406          107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF  186 (286)
Q Consensus       107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L  186 (286)
                      +.++++++.++. +|..+.  +++++|++++|.++ .+|..+..+++|+.|++++|.+++..     +..|..+++|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS-----NQSFSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEE
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeC-----HhHccCCCCCCEE
Confidence            567777777775 444332  57778888888777 66677777777888888777776432     3556777777777


Q ss_pred             EccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       187 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      ++++|.+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77777777666666777777777777777777444445667777777777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=1.4e-17  Score=155.65  Aligned_cols=148  Identities=23%  Similarity=0.232  Sum_probs=106.1

Q ss_pred             CccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCCh
Q 041406          120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPE  199 (286)
Q Consensus       120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~  199 (286)
                      .+..+..+..|+.|+|++|.+. .+|..+..+++|++|++++|.++      .+|..+..+++|++|+|++|.++ .+|.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~  287 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT------ELPAEIKNLSNLRVLDLSHNRLT-SLPA  287 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS------CCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc------ccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence            4566777888888888888887 67777778888888888888875      24677888888888888888888 6777


Q ss_pred             hccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC-CCEEEcccCcCccccchhccCc
Q 041406          200 ELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN-LMSVMLSCNALSGSLPEQLSEL  276 (286)
Q Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l  276 (286)
                      .+..+++|++|++++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..... ...+++++|.+++.+|..+..+
T Consensus       288 ~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l  364 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI  364 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred             hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence            7888888888888888886 67777888888888888888888777765543321 2246788888887777655443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=9.4e-16  Score=118.55  Aligned_cols=91  Identities=24%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCE
Q 041406          178 GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMS  257 (286)
Q Consensus       178 ~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  257 (286)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK  128 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence            34444444444444444333333445555555555555555333334445555555555555555333333445555555


Q ss_pred             EEcccCcCccc
Q 041406          258 VMLSCNALSGS  268 (286)
Q Consensus       258 L~l~~n~l~~~  268 (286)
                      |++++|++.+.
T Consensus       129 L~l~~N~~~~~  139 (177)
T 2o6r_A          129 IWLHTNPWDCS  139 (177)
T ss_dssp             EECCSSCBCCC
T ss_pred             EEecCCCeecc
Confidence            55555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.2e-15  Score=119.61  Aligned_cols=129  Identities=21%  Similarity=0.356  Sum_probs=114.1

Q ss_pred             CCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCE
Q 041406          130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSM  209 (286)
Q Consensus       130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~  209 (286)
                      -++++++++.++ .+|..+.  +++++|++++|.++      .+|..+..+++|++|++++|.+++..+..|..+++|++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            368999999998 7777553  68999999999986      35788999999999999999999877788999999999


Q ss_pred             EEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       210 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      |++++|.+++..+..|..+++|++|+|++|.++...+..+..+++|+.|++++|++..
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9999999997777789999999999999999996555678899999999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.63  E-value=6.5e-17  Score=147.97  Aligned_cols=40  Identities=10%  Similarity=-0.024  Sum_probs=19.2

Q ss_pred             CccccCCCCCCEEEccCCcccccCC-hhccCCCCCCEEEcc
Q 041406          174 PPEIGELSLLEIFSSPSCSITGPLP-EELSKLKFLSMLDLS  213 (286)
Q Consensus       174 ~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~L~~L~l~  213 (286)
                      |..+..+++|++|++++|.+++... ..+..+++|++|+++
T Consensus       286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            4444555566666666655443221 223444445554444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=8.5e-16  Score=118.74  Aligned_cols=132  Identities=19%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             hcCCCCCCEEEccCCCCCCCCccccccC-CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCcccc
Q 041406          100 VSNLKRLKQLSLGENQLSDFVPSQLGVL-TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIG  178 (286)
Q Consensus       100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  178 (286)
                      +..+++|+.|++++|.++. ++. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+              
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l--------------   76 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI--------------   76 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC--------------
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc--------------
Confidence            3445566666666666654 233 3333 3666666666665532  3444555555555555554              


Q ss_pred             CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccch--hhhCCCCCCEEEcccccccccCCcc----CCCC
Q 041406          179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK--AIGELRKLGILNLGSTQLNGSIPAE----LGKC  252 (286)
Q Consensus       179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~  252 (286)
                                     ++..+..+..+++|++|++++|.++ .+|.  .+..+++|++|++++|.++ .+|..    +..+
T Consensus        77 ---------------~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l  139 (176)
T 1a9n_A           77 ---------------CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV  139 (176)
T ss_dssp             ---------------CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred             ---------------cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC
Confidence                           4322222344455555555555553 3333  4445555555555555554 33332    4455


Q ss_pred             CCCCEEEcccCcCc
Q 041406          253 ENLMSVMLSCNALS  266 (286)
Q Consensus       253 ~~L~~L~l~~n~l~  266 (286)
                      ++|+.||+++|...
T Consensus       140 ~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          140 PQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCSEETTEECCHH
T ss_pred             CccceeCCCcCCHH
Confidence            55555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=5.6e-15  Score=114.15  Aligned_cols=125  Identities=20%  Similarity=0.187  Sum_probs=99.9

Q ss_pred             CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCE
Q 041406          154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGI  233 (286)
Q Consensus       154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  233 (286)
                      .+.++++++.++.      +|..+  .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus         9 ~~~l~~~~~~l~~------~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTS------VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSS------CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCcc------CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            3556666665542      23222  257788888888887666667889999999999999999666667889999999


Q ss_pred             EEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          234 LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       234 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      |++++|.+++..+..+..+++|++|++++|++++..+..+..++ |++|++++|
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            99999999976666788999999999999999955555678899 999999987

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1.8e-15  Score=116.93  Aligned_cols=127  Identities=17%  Similarity=0.168  Sum_probs=96.9

Q ss_pred             CCCCCCCEEEccCCccccccCCCCCCccccCC-CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhC
Q 041406          149 GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL-SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE  227 (286)
Q Consensus       149 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (286)
                      ..+.+|+.|++++|.+..      +|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..
T Consensus        16 ~~~~~L~~L~l~~n~l~~------i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~   86 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV------IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA   86 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS------CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             CCcCCceEEEeeCCCCch------hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc
Confidence            345556666666665542      122 2333 3777777777777754  56788999999999999999544455689


Q ss_pred             CCCCCEEEcccccccccCCc--cCCCCCCCCEEEcccCcCccccch----hccCcc-cceEEccCC
Q 041406          228 LRKLGILNLGSTQLNGSIPA--ELGKCENLMSVMLSCNALSGSLPE----QLSELP-VLIFAAEKN  286 (286)
Q Consensus       228 l~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~-L~~l~l~~N  286 (286)
                      +++|++|++++|.++ .+|.  .+..+++|++|++++|+++ .+|.    .+..+| |+.|++++|
T Consensus        87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence            999999999999997 5665  7889999999999999998 6666    488999 999999876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.60  E-value=2.6e-16  Score=143.94  Aligned_cols=125  Identities=16%  Similarity=0.158  Sum_probs=64.9

Q ss_pred             CEEEEEcCCCCcccc----cCccccccccc--cccCCCCCc----cccchhhcCCCCCCEEEccCCCCCCCCccccccCC
Q 041406           59 RVIWLVLPTHSLKGP----LSPSLFFLSSL--SDLSQNPLF----GQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT  128 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~----~~~~~~~l~~l--L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  128 (286)
                      +++.|++++|.+.+.    ++.....++.|  |++++|.+.    +.++..+..+++|+.|++++|.+.+ ++..+..++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~  243 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA  243 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence            677777777766544    22233445555  666666665    2344445566667777776665544 333344444


Q ss_pred             CCCEEecC---------------------------CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCC
Q 041406          129 QLETLSLG---------------------------SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS  181 (286)
Q Consensus       129 ~L~~L~l~---------------------------~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~  181 (286)
                      +|++|+++                           ++.. ..+|..+..+++|++|++++|.+++..    ++..+..++
T Consensus       244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~----~~~~~~~~~  318 (592)
T 3ogk_B          244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED----HCTLIQKCP  318 (592)
T ss_dssp             TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH----HHHHHTTCT
T ss_pred             HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH----HHHHHHhCc
Confidence            44444443                           2211 133444455566777777766654322    112234455


Q ss_pred             CCCEEEcc
Q 041406          182 LLEIFSSP  189 (286)
Q Consensus       182 ~L~~L~l~  189 (286)
                      +|++|+++
T Consensus       319 ~L~~L~L~  326 (592)
T 3ogk_B          319 NLEVLETR  326 (592)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEecc
Confidence            55555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=7.9e-18  Score=132.77  Aligned_cols=153  Identities=22%  Similarity=0.238  Sum_probs=92.2

Q ss_pred             CCCCCCEEEccCCCCCCCCcc------ccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc
Q 041406          102 NLKRLKQLSLGENQLSDFVPS------QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP  175 (286)
Q Consensus       102 ~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  175 (286)
                      ....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+..      +|.
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~------l~~   87 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK------IEN   87 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS------CSS
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc------ccc
Confidence            334444444444444443333      56666666666666666663 44 55666666666666666641      345


Q ss_pred             cccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc-hhhhCCCCCCEEEcccccccccCCcc------
Q 041406          176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAE------  248 (286)
Q Consensus       176 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------  248 (286)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..      
T Consensus        88 ~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  165 (198)
T 1ds9_A           88 LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY  165 (198)
T ss_dssp             HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred             hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence            55555667777777776664 33 45666677777777777763221 35667777777777777776554432      


Q ss_pred             ----CCCCCCCCEEEcccCcCc
Q 041406          249 ----LGKCENLMSVMLSCNALS  266 (286)
Q Consensus       249 ----~~~~~~L~~L~l~~n~l~  266 (286)
                          +..+++|+.||  +|.++
T Consensus       166 ~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          166 RIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHhCCCcEEEC--CcccC
Confidence                55677777776  55554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=5.3e-15  Score=125.71  Aligned_cols=218  Identities=14%  Similarity=0.109  Sum_probs=151.7

Q ss_pred             CEEEEEcCCCCcc--cccCccccccccccccCCCCCccccchhhcC--------CCCCCEEEccCCCCCCCCccccccCC
Q 041406           59 RVIWLVLPTHSLK--GPLSPSLFFLSSLSDLSQNPLFGQLSRQVSN--------LKRLKQLSLGENQLSDFVPSQLGVLT  128 (286)
Q Consensus        59 ~l~~l~l~~~~l~--~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~  128 (286)
                      +++.|+|++|.+.  ......+.. ..+..+..+.+   -..+|.+        +++|+.+++.. .++...+..|.+++
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~-~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~  124 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPN-GKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD  124 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGG-GCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred             cCeEEecCcceeEEecCccccccc-ccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence            6888888888776  222222222 11122222321   2244555        89999999988 77776677888999


Q ss_pred             CCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcccc---ccCCC------------------CCCc------------
Q 041406          129 QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG---TVRDK------------------LLPP------------  175 (286)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~------------------~~~~------------  175 (286)
                      +|+.+++.+|.+....+..|..+.++..+....+....   .+...                  .++.            
T Consensus       125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred             ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence            99999999988875555667776666666654421100   00000                  0000            


Q ss_pred             ---------------cc-cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCC-EEEccc
Q 041406          176 ---------------EI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLG-ILNLGS  238 (286)
Q Consensus       176 ---------------~~-~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~  238 (286)
                                     .+ ..+++|+.+++++|+++...+..|..+.+|+.+++.+| ++...+..|..+++|+ .+.+.+
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence                           00 12689999999999998666678999999999999998 7655567889999999 999988


Q ss_pred             ccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEc
Q 041406          239 TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAA  283 (286)
Q Consensus       239 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l  283 (286)
                       .++...+..|.++++|+.+++++|.++..-+.+|.+++ |+.++.
T Consensus       284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             67656678899999999999999999955556899998 998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=1.5e-17  Score=131.17  Aligned_cols=149  Identities=21%  Similarity=0.256  Sum_probs=123.1

Q ss_pred             cccCCCCCEEecCCCCCCCCCCc------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC
Q 041406          124 LGVLTQLETLSLGSNSFTGEIPS------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL  197 (286)
Q Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  197 (286)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+.+      +| .+..+++|++|++++|.+. .+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~------l~-~~~~l~~L~~L~l~~n~l~-~l   85 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK------IS-SLSGMENLRILSLGRNLIK-KI   85 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC------CC-CHHHHTTCCEEEEEEEEEC-SC
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc------cc-ccccCCCCCEEECCCCCcc-cc
Confidence            44556667777777777766665      88899999999999999864      45 7888999999999999998 67


Q ss_pred             ChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCccccch-----
Q 041406          198 PEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP-AELGKCENLMSVMLSCNALSGSLPE-----  271 (286)
Q Consensus       198 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-----  271 (286)
                      |..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|.     
T Consensus        86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  163 (198)
T 1ds9_A           86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred             cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence            8777777899999999999985 55 68889999999999999984322 4688899999999999999876554     


Q ss_pred             -----hccCcc-cceEE
Q 041406          272 -----QLSELP-VLIFA  282 (286)
Q Consensus       272 -----~l~~l~-L~~l~  282 (286)
                           .+..++ |++|+
T Consensus       164 ~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          164 EYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHCSSCSEEC
T ss_pred             HHHHHHHHhCCCcEEEC
Confidence                 377888 88886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=2.5e-16  Score=144.08  Aligned_cols=207  Identities=15%  Similarity=0.039  Sum_probs=101.0

Q ss_pred             CEEEEEcCCCCcccccCc-cccccccc--cccCCCCCccc-cchhhcCCCCCCEEEccC---------CCCCCCCcccc-
Q 041406           59 RVIWLVLPTHSLKGPLSP-SLFFLSSL--SDLSQNPLFGQ-LSRQVSNLKRLKQLSLGE---------NQLSDFVPSQL-  124 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~-~~~~l~~l--L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~---------n~l~~~~~~~~-  124 (286)
                      +++.|++++|.+++.... .+..+++|  |++++| +.+. ++.....+++|+.|++..         +.++......+ 
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            566666666665433222 23344555  555555 3222 122223456666666632         22222111122 


Q ss_pred             ccCCCCCEEecCCCCCCCCCCcccC-CCCCCCEEEcc--C----CccccccCCCCCCccccCCCCCCEEEccCCcccccC
Q 041406          125 GVLTQLETLSLGSNSFTGEIPSELG-KLKNLKTLDLS--G----NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL  197 (286)
Q Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  197 (286)
                      ..+++|++|.++.+.+++.....+. .+++|+.|+++  +    +.+++......++..+..+++|++|++++ .+++..
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~  447 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV  447 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence            2356666666665555533333332 35666666666  2    22321100001122244556666666655 444433


Q ss_pred             ChhccC-CCCCCEEEcccCCCCcccchhh-hCCCCCCEEEcccccccccCCc-cCCCCCCCCEEEcccCcCcc
Q 041406          198 PEELSK-LKFLSMLDLSENPLKCSVPKAI-GELRKLGILNLGSTQLNGSIPA-ELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       198 p~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~  267 (286)
                      +..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++.
T Consensus       448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            333333 5667777777666654444433 4566677777777666543222 23345667777777766643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=1.8e-13  Score=104.92  Aligned_cols=105  Identities=21%  Similarity=0.232  Sum_probs=57.8

Q ss_pred             CCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCE
Q 041406          130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSM  209 (286)
Q Consensus       130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~  209 (286)
                      .+.+++++|.++ .+|..+.  +++++|++++|.+++..     |..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccC-----hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            456677777666 4555432  55666666666665322     344555555666666665555444444455555555


Q ss_pred             EEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       210 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      |++++|.+++..+..+..+++|++|++++|.++
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            555555555333334555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.50  E-value=1.2e-15  Score=139.48  Aligned_cols=201  Identities=15%  Similarity=0.099  Sum_probs=111.8

Q ss_pred             ccccc--cccCCCCCccccchhhc-CCCCCCEEEccCC-CCCCC-CccccccCCCCCEEecCCCCCCCCCCccc----CC
Q 041406           80 FLSSL--SDLSQNPLFGQLSRQVS-NLKRLKQLSLGEN-QLSDF-VPSQLGVLTQLETLSLGSNSFTGEIPSEL----GK  150 (286)
Q Consensus        80 ~l~~l--L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~  150 (286)
                      .+++|  |++++|.+.+..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            34455  67777777666555554 5677777777776 33321 22333467777777777777654333322    24


Q ss_pred             CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC-------------
Q 041406          151 LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL-------------  217 (286)
Q Consensus       151 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l-------------  217 (286)
                      +++|++|++++|.  +.+....++..+..+++|++|++++|...+.++..+..+++|++|+++.+..             
T Consensus       183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            5677777777665  1111011222234457777777777633223555555666666666543321             


Q ss_pred             -----------------CcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEEEcccCcCccc-cchhccCcc-
Q 041406          218 -----------------KCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSVMLSCNALSGS-LPEQLSELP-  277 (286)
Q Consensus       218 -----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~-  277 (286)
                                       .+.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +... ++.....++ 
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence                             1123333345677777777777765432 222456777888888777 3322 222333466 


Q ss_pred             cceEEc
Q 041406          278 VLIFAA  283 (286)
Q Consensus       278 L~~l~l  283 (286)
                      |++|++
T Consensus       340 L~~L~L  345 (594)
T 2p1m_B          340 LRELRV  345 (594)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            777776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=1.8e-13  Score=105.34  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=64.0

Q ss_pred             CEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEE
Q 041406          131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML  210 (286)
Q Consensus       131 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L  210 (286)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+.+..     |..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccC-----HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            56777777775 5665443  66777777777765432     4556666666666666666664444445566666666


Q ss_pred             EcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          211 DLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       211 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      ++++|.+++..+..+..+++|++|++++|.+.
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            66666666433334566666666666666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.6e-13  Score=105.30  Aligned_cols=108  Identities=23%  Similarity=0.282  Sum_probs=93.8

Q ss_pred             CCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCC
Q 041406          153 NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLG  232 (286)
Q Consensus       153 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  232 (286)
                      ..+.+++++|.++.      +|..+  .+++++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        10 ~~~~l~~s~n~l~~------ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLAS------VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCSS------CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEeCCCCcCc------cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence            46789999999863      45544  37899999999999988888899999999999999999966666788999999


Q ss_pred             EEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 041406          233 ILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS  268 (286)
Q Consensus       233 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  268 (286)
                      +|+|++|.+++..+..+..+++|++|++++|++...
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999999999966666799999999999999999854

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=3e-13  Score=104.17  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=91.3

Q ss_pred             CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCE
Q 041406          154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGI  233 (286)
Q Consensus       154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  233 (286)
                      -+.+++++|.+..      +|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        14 ~~~l~~~~n~l~~------iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLAS------VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSS------CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCc------cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            4789999998852      455543  78999999999999888889999999999999999999655556789999999


Q ss_pred             EEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          234 LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       234 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      |+|++|.+++..+..+..+++|++|++++|++..
T Consensus        86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             EECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9999999996555568999999999999999984

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=4.4e-15  Score=128.13  Aligned_cols=158  Identities=20%  Similarity=0.178  Sum_probs=76.7

Q ss_pred             cccCCCCCccccchhhcC-----CCCCCEEEccCCCCCCCCcccc-ccCCCCCEEecCCCCCCCCCCccc-----CCCCC
Q 041406           85 SDLSQNPLFGQLSRQVSN-----LKRLKQLSLGENQLSDFVPSQL-GVLTQLETLSLGSNSFTGEIPSEL-----GKLKN  153 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~  153 (286)
                      +++++|.++......+..     .++|+.|++++|.++......+ ..+++|++|++++|.++......+     ...++
T Consensus        77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~  156 (372)
T 3un9_A           77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ  156 (372)
T ss_dssp             EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCC
T ss_pred             EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCc
Confidence            566666655443333222     1456666666666543222222 223456666666666553222222     23455


Q ss_pred             CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCcc----cchhh
Q 041406          154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS----VPKAI  225 (286)
Q Consensus       154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~  225 (286)
                      |++|++++|.++... ...++..+...++|++|++++|.+.+.    ++..+...++|+.|++++|.+++.    ++..+
T Consensus       157 L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L  235 (372)
T 3un9_A          157 ITTLRLSNNPLTAAG-VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA  235 (372)
T ss_dssp             CCEEECCSSCCHHHH-HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred             cceeeCCCCCCChHH-HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence            666666666654211 011233344555666666666665532    233444455566666666666532    22233


Q ss_pred             hCCCCCCEEEcccccccc
Q 041406          226 GELRKLGILNLGSTQLNG  243 (286)
Q Consensus       226 ~~l~~L~~L~L~~n~l~~  243 (286)
                      ...++|++|+|++|.+++
T Consensus       236 ~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          236 REHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHCSSCCEEECTTSSCCH
T ss_pred             HhCCCCCEEeccCCCCCH
Confidence            344556666666665554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=1e-11  Score=108.07  Aligned_cols=212  Identities=13%  Similarity=0.159  Sum_probs=128.3

Q ss_pred             EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406           60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS  137 (286)
Q Consensus        60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  137 (286)
                      ++.+.+.. .+...-..+|..+.+|  +++..|.+...-..+|. +.+|+.+.+.. .+.......|.++++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence            44444443 3332333345555555  55555555443333443 35555555542 24443444556666666666654


Q ss_pred             CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc-----ccCChhccCCCCCCEEEc
Q 041406          138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-----GPLPEELSKLKFLSMLDL  212 (286)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~p~~~~~~~~L~~L~l  212 (286)
                      + ++..-...|.. .+|+.+.+.++ ++. +    -..+|.++++|+.+++.++.+.     ...+..|..+++|+.+++
T Consensus       236 ~-l~~I~~~aF~~-~~L~~i~lp~~-i~~-I----~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          236 N-VSTIGQEAFRE-SGITTVKLPNG-VTN-I----ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             T-CCEECTTTTTT-CCCSEEEEETT-CCE-E----CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             C-ccCcccccccc-CCccEEEeCCC-ccE-E----ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            3 33222233444 56666666332 321 1    1466778888999988877654     344567888888999998


Q ss_pred             ccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc--cceEEccC
Q 041406          213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP--VLIFAAEK  285 (286)
Q Consensus       213 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--L~~l~l~~  285 (286)
                      .+ .++......|..+++|+.+.+..+ ++......|.++ +|+.+++.+|.+.......|..++  +..+.+..
T Consensus       308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          308 PE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            84 466445567888899999999655 554556778888 999999999988755556777776  77776643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.37  E-value=2.5e-14  Score=123.39  Aligned_cols=172  Identities=18%  Similarity=0.168  Sum_probs=125.3

Q ss_pred             CCCCCEEEccCCCCCCCCcccccc-----CCCCCEEecCCCCCCCCCCccc-CCCCCCCEEEccCCccccccCCCCCCcc
Q 041406          103 LKRLKQLSLGENQLSDFVPSQLGV-----LTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPE  176 (286)
Q Consensus       103 l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~  176 (286)
                      ++.|+.|++++|.++......+..     .++|++|++++|.++......+ ..+++|+.|++++|.++.... ..+...
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHH
Confidence            367999999999988644444433     2699999999999874322222 235689999999999864321 011222


Q ss_pred             c-cCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEccccccccc---
Q 041406          177 I-GELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGS---  244 (286)
Q Consensus       177 ~-~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  244 (286)
                      + ...++|++|++++|.++..    ++..+...++|++|++++|.+++.    ++..+...++|++|+|++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            3 2467899999999999742    445567888999999999999753    345667788999999999999853   


Q ss_pred             -CCccCCCCCCCCEEEcccCcCccccchhccC
Q 041406          245 -IPAELGKCENLMSVMLSCNALSGSLPEQLSE  275 (286)
Q Consensus       245 -~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  275 (286)
                       ++..+...++|++|++++|.+++.....+..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence             3344556789999999999998655554443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.36  E-value=6.1e-12  Score=106.73  Aligned_cols=172  Identities=14%  Similarity=0.096  Sum_probs=131.0

Q ss_pred             cccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCC----CC------------
Q 041406           81 LSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF----TG------------  142 (286)
Q Consensus        81 l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~------------  142 (286)
                      ++.|  +++.. .+...-+.+|.+|++|+.++++.|.+....+..|..+.++..+.......    ..            
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            7777  77777 77666667888899999999988888776666777776666666544110    00            


Q ss_pred             ----------CCCc----------c-----------------c-CCCCCCCEEEccCCccccccCCCCCCccccCCCCCC
Q 041406          143 ----------EIPS----------E-----------------L-GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE  184 (286)
Q Consensus       143 ----------~~~~----------~-----------------l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~  184 (286)
                                .++.          .                 + ..+++|+.+++.+|.++...     +..|.++.+|+
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~  253 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-----DFTFAQKKYLL  253 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-----TTTTTTCTTCC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-----HhhhhCCCCCC
Confidence                      0000          0                 0 02689999999999886432     46788999999


Q ss_pred             EEEccCCcccccCChhccCCCCCC-EEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406          185 IFSSPSCSITGPLPEELSKLKFLS-MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML  260 (286)
Q Consensus       185 ~L~l~~n~~~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  260 (286)
                      ++++..| +....+..|..+.+|+ .+++.+ .++...+..|..+++|+.+++.+|.++...+..|.++++|+.++.
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999998 7756677899999999 999988 676555688999999999999999999777778999999999864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=6.4e-11  Score=103.06  Aligned_cols=183  Identities=14%  Similarity=0.110  Sum_probs=111.9

Q ss_pred             CccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCC
Q 041406           92 LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK  171 (286)
Q Consensus        92 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  171 (286)
                      +...-..+|.+|++|+.+++..|.++......|. ..+|+.+.+..+ ++......|..+++|+.+++..+ ++ .++  
T Consensus       168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~--  241 (401)
T 4fdw_A          168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIG--  241 (401)
T ss_dssp             CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EEC--
T ss_pred             ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccc--
Confidence            3333345566666666666666666554444444 466666666533 44333445666677777777654 22 111  


Q ss_pred             CCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCC-----cccchhhhCCCCCCEEEcccccccccCC
Q 041406          172 LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK-----CSVPKAIGELRKLGILNLGSTQLNGSIP  246 (286)
Q Consensus       172 ~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~  246 (286)
                        ..+|.+ .+|+.+.+. +.+.......|..+++|+.+++.++.+.     ......|..+++|+.+.+.+ .++....
T Consensus       242 --~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~  316 (401)
T 4fdw_A          242 --QEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ  316 (401)
T ss_dssp             --TTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT
T ss_pred             --cccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh
Confidence              233444 567777773 3455444567788888888888777654     23345677888888888874 3554555


Q ss_pred             ccCCCCCCCCEEEcccCcCccccchhccCcccceEEccCC
Q 041406          247 AELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN  286 (286)
Q Consensus       247 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~L~~l~l~~N  286 (286)
                      ..|.++++|+.+++..+ ++..-..+|..+.|+.+++.+|
T Consensus       317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n  355 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGT  355 (401)
T ss_dssp             TTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCS
T ss_pred             hhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCC
Confidence            67788888888888554 5533344666666777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=9.6e-12  Score=106.22  Aligned_cols=105  Identities=19%  Similarity=0.145  Sum_probs=90.0

Q ss_pred             CEEEccCC-ccccccCCCCCCccccCCCCCCEEEccC-CcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCC
Q 041406          155 KTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPS-CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLG  232 (286)
Q Consensus       155 ~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  232 (286)
                      ..++++++ .++.      +|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|+
T Consensus        11 ~~v~~~~~n~l~~------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS------LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT------TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CEEEcCCCCCCCc------cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence            35688877 7753      577 88999999999996 999977778899999999999999999988888999999999


Q ss_pred             EEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406          233 ILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG  267 (286)
Q Consensus       233 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  267 (286)
                      +|+|++|++++..+..+..++ |+.|++++|.+..
T Consensus        84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999999965555555555 9999999999984

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=1.7e-11  Score=104.66  Aligned_cols=105  Identities=20%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             CEEecCCC-CCCCCCCcccCCCCCCCEEEccC-CccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCC
Q 041406          131 ETLSLGSN-SFTGEIPSELGKLKNLKTLDLSG-NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS  208 (286)
Q Consensus       131 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~  208 (286)
                      ..++.+++ .++ .+|. +..+.+|+.|++++ |.+.+..     +..|..+++|++|+|++|.+++..|..|..+++|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence            35688888 888 6888 99999999999996 9987543     46799999999999999999988888999999999


Q ss_pred             EEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406          209 MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG  243 (286)
Q Consensus       209 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  243 (286)
                      +|+|++|.+++..+..+..++ |+.|+|.+|.+..
T Consensus        84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999999955555555555 9999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.10  E-value=2.6e-11  Score=103.86  Aligned_cols=63  Identities=17%  Similarity=0.201  Sum_probs=27.4

Q ss_pred             CCCCCEEEcccCCCCcccchhhh---CCCCCCEEEccccccccc----CCccCCCCCCCCEEEcccCcCc
Q 041406          204 LKFLSMLDLSENPLKCSVPKAIG---ELRKLGILNLGSTQLNGS----IPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            34555555555544432222222   244555555555554432    1111223445555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.10  E-value=7.7e-11  Score=100.94  Aligned_cols=201  Identities=14%  Similarity=0.145  Sum_probs=127.3

Q ss_pred             CEEEEEcCCCCccc-c-------cCccccccccc--cccCCCC-----C----ccccchhhcCCCCCCEEEccCCCCCCC
Q 041406           59 RVIWLVLPTHSLKG-P-------LSPSLFFLSSL--SDLSQNP-----L----FGQLSRQVSNLKRLKQLSLGENQLSDF  119 (286)
Q Consensus        59 ~l~~l~l~~~~l~~-~-------~~~~~~~l~~l--L~l~~n~-----~----~~~~~~~l~~l~~L~~L~l~~n~l~~~  119 (286)
                      +|+.|.+......| .       +..++..+++|  |.+....     +    .+.+...+..+|+|+.|.++++.-.. 
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-
Confidence            67888888665542 1       23334455666  5444332     1    12355667888999999998873112 


Q ss_pred             CccccccCCCCCEEecCCCCCCCCCCcccC--CCCCCCEEEccC--CccccccCCCCCCccc--cCCCCCCEEEccCCcc
Q 041406          120 VPSQLGVLTQLETLSLGSNSFTGEIPSELG--KLKNLKTLDLSG--NEFNGTVRDKLLPPEI--GELSLLEIFSSPSCSI  193 (286)
Q Consensus       120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~  193 (286)
                      .+. + .+++|+.|++..|.+.......+.  .+++|+.|+++.  +...+......+...+  ..+++|++|++.+|.+
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            233 3 388999999998877643223333  689999999853  2221111001112223  2478999999999998


Q ss_pred             cccCChhc---cCCCCCCEEEcccCCCCccc----chhhhCCCCCCEEEcccccccccCCccCCC-CCCCCEEEcccCc
Q 041406          194 TGPLPEEL---SKLKFLSMLDLSENPLKCSV----PKAIGELRKLGILNLGSTQLNGSIPAELGK-CENLMSVMLSCNA  264 (286)
Q Consensus       194 ~~~~p~~~---~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~  264 (286)
                      .+..+..+   ..+++|++|+++.|.+.+..    +..+..+++|+.|++++|.+++.....+.. +  ..+++++.++
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            75433333   24678999999999998643    334456799999999999988654333332 2  3568888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.82  E-value=3.4e-11  Score=98.30  Aligned_cols=18  Identities=11%  Similarity=-0.125  Sum_probs=12.3

Q ss_pred             CCccceEecCC--CEEEEEc
Q 041406           48 CYWVGVSCQRG--RVIWLVL   65 (286)
Q Consensus        48 c~w~gv~c~~~--~l~~l~l   65 (286)
                      |.|.|+.|...  +|..+..
T Consensus        78 ~~~~g~i~~~~~~ki~~~v~   97 (267)
T 3rw6_A           78 KAVNYKILDRENRRISIIIN   97 (267)
T ss_dssp             HHTTSSCBCTTSCBCCCEEE
T ss_pred             HhcCcEEECCCCCEEEEEEe
Confidence            67999999865  5544433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.77  E-value=2.4e-09  Score=82.98  Aligned_cols=120  Identities=18%  Similarity=0.148  Sum_probs=87.4

Q ss_pred             cccCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCcc
Q 041406          146 SELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS  220 (286)
Q Consensus       146 ~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~  220 (286)
                      ..+...++|++|++++| .+.... ...+...+...++|++|++++|.+...    +...+...++|++|++++|.+.+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHH-HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            44667889999999998 775321 112345666778899999999988743    334555667899999999998754


Q ss_pred             ----cchhhhCCCCCCEEEc--cccccccc----CCccCCCCCCCCEEEcccCcCc
Q 041406          221 ----VPKAIGELRKLGILNL--GSTQLNGS----IPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       221 ----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                          +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                3456667788999999  78888754    3344555688999999999876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=2.2e-09  Score=83.22  Aligned_cols=122  Identities=19%  Similarity=0.160  Sum_probs=64.3

Q ss_pred             cchhhcCCCCCCEEEccCC-CCCCC----CccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCC
Q 041406           96 LSRQVSNLKRLKQLSLGEN-QLSDF----VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD  170 (286)
Q Consensus        96 ~~~~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  170 (286)
                      +...+...+.|++|++++| .+...    +...+...++|++|++++|.+......                        
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~------------------------   83 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF------------------------   83 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH------------------------
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH------------------------
Confidence            3444556677777777776 66532    122333445566666666655421110                        


Q ss_pred             CCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEc--ccCCCCcc----cchhhhCCCCCCEEEccccc
Q 041406          171 KLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDL--SENPLKCS----VPKAIGELRKLGILNLGSTQ  240 (286)
Q Consensus       171 ~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~  240 (286)
                       .+...+...+.|++|++++|.+...    +...+...++|++|++  ++|.+...    +...+...++|++|++++|.
T Consensus        84 -~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           84 -ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             -HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             -HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence             1122333344455555555555422    2344555566777777  66666543    23344455677777777776


Q ss_pred             cc
Q 041406          241 LN  242 (286)
Q Consensus       241 l~  242 (286)
                      +.
T Consensus       163 i~  164 (185)
T 1io0_A          163 QG  164 (185)
T ss_dssp             HH
T ss_pred             CC
Confidence            64

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.54  E-value=1.3e-08  Score=83.06  Aligned_cols=66  Identities=29%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             CCCCCCEEEcccCCCCc--ccchhhhCCCCCCEEEcccccccccCCccCCCCC--CCCEEEcccCcCccccc
Q 041406          203 KLKFLSMLDLSENPLKC--SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE--NLMSVMLSCNALSGSLP  270 (286)
Q Consensus       203 ~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~  270 (286)
                      .+++|+.|++++|.+++  .++..+..+++|+.|+|++|.+++.  ..+..+.  +|++|++++|.+.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            34455555555555554  2334444555555555555555532  1122222  56666666666554433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.49  E-value=8.8e-06  Score=70.40  Aligned_cols=107  Identities=8%  Similarity=0.115  Sum_probs=62.6

Q ss_pred             cccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCC
Q 041406          176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENL  255 (286)
Q Consensus       176 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  255 (286)
                      +|..+..|+.+.+..+... .....|..+..|+.+.+.. .++......|..+.+|+.+.+..+ ++......|.++.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            3445566666666544322 3334556666677776643 333233346667777777777654 443444567777778


Q ss_pred             CEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          256 MSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       256 ~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      +++.+..+ ++..-..+|.+++ |+.+++.+|
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            87777544 4422234677777 777777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.48  E-value=5.9e-06  Score=71.51  Aligned_cols=207  Identities=15%  Similarity=0.051  Sum_probs=114.6

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCC--------------------
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQL--------------------  116 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l--------------------  116 (286)
                      +++.+.+..+. ...-..+|.....|  +.+..+ +...-..+|.++..|+.+.+..+..                    
T Consensus       163 ~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~  240 (394)
T 4fs7_A          163 SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS  240 (394)
T ss_dssp             TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT
T ss_pred             CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC
Confidence            67777776543 22223355566666  455443 3333334555666666555443321                    


Q ss_pred             -CCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406          117 -SDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG  195 (286)
Q Consensus       117 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (286)
                       +......+..+..++.+.+..+... .....+..+..++........+.        ...+..+.+|+.+.+..+ +..
T Consensus       241 ~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--------~~~F~~~~~L~~i~l~~~-i~~  310 (394)
T 4fs7_A          241 FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--------EKTFYGCSSLTEVKLLDS-VKF  310 (394)
T ss_dssp             CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--------TTTTTTCTTCCEEEECTT-CCE
T ss_pred             ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--------cccccccccccccccccc-cce
Confidence             1111223344455555555443322 23334445555555555443321        234566777888877654 443


Q ss_pred             cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccC
Q 041406          196 PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSE  275 (286)
Q Consensus       196 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  275 (286)
                      .....|..+.+|+.+++..+ ++......|.++++|+.+.+..+ ++......|.++++|+.+++..+ +. .+..++.+
T Consensus       311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~  386 (394)
T 4fs7_A          311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFED  386 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCT
T ss_pred             echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecC
Confidence            44556777888888888644 54334567778888888888766 55455567788888888888654 22 33456666


Q ss_pred             cc-cceE
Q 041406          276 LP-VLIF  281 (286)
Q Consensus       276 l~-L~~l  281 (286)
                      .+ |+.+
T Consensus       387 c~~L~~I  393 (394)
T 4fs7_A          387 TTKFKWI  393 (394)
T ss_dssp             TCEEEEE
T ss_pred             CCCCcEE
Confidence            66 6543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=1.1e-07  Score=72.18  Aligned_cols=85  Identities=12%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             CCCEEEccCCcccccCChhccCCCCCCEEEcccCC-CCcccchhhhCC----CCCCEEEcccc-cccccCCccCCCCCCC
Q 041406          182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP-LKCSVPKAIGEL----RKLGILNLGST-QLNGSIPAELGKCENL  255 (286)
Q Consensus       182 ~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n-~l~~~~~~~~~~~~~L  255 (286)
                      .|++|+++++.++..--..+..+++|++|++++|. +++.....+..+    ++|++|++++| .+++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46666666666554444455666777777777764 555444445543    35777777776 3665444455667777


Q ss_pred             CEEEcccC-cCc
Q 041406          256 MSVMLSCN-ALS  266 (286)
Q Consensus       256 ~~L~l~~n-~l~  266 (286)
                      ++|+++++ .++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            77777776 344

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.41  E-value=1.1e-05  Score=69.90  Aligned_cols=196  Identities=14%  Similarity=0.072  Sum_probs=121.5

Q ss_pred             ccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCC-----------
Q 041406           76 PSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG-----------  142 (286)
Q Consensus        76 ~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------  142 (286)
                      .+|..+..|  +.+..+ +...-..+|..+.+|+.+.+..+ ++......|..+..|+.+.+..+....           
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~  233 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK  233 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence            456677777  666543 33344567888999999998765 444445567777777777665543210           


Q ss_pred             ----------CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEc
Q 041406          143 ----------EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDL  212 (286)
Q Consensus       143 ----------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l  212 (286)
                                .....+..+..++.+.+..+...  +    -...+.....++.+....+.+.   ...+..+.+|+.+.+
T Consensus       234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--i----~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--I----GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL  304 (394)
T ss_dssp             EEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--E----CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred             eEEECCCceecccccccccccceeEEcCCCcce--e----eccccccccccceeccCceeec---ccccccccccccccc
Confidence                      01112233344444444333211  0    1233444555555555443321   235667888999888


Q ss_pred             ccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406          213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       213 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                      ..+ ++......|..+++|+.+.+..+ ++......|.++.+|+.+++..+ ++..-..+|.+++ |+.+++..
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            665 44344567889999999999754 55455677899999999999877 6633345899988 99998764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=2.9e-07  Score=69.92  Aligned_cols=89  Identities=8%  Similarity=0.079  Sum_probs=70.5

Q ss_pred             CChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccc-ccccCCccCCCC----CCCCEEEcccC-cCccccc
Q 041406          197 LPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKC----ENLMSVMLSCN-ALSGSLP  270 (286)
Q Consensus       197 ~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~l~~n-~l~~~~~  270 (286)
                      +|.....-..|+.||+++|.+++.....+..+++|++|+|++|. +++..-..+..+    ++|++|++++| +++..-.
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433233479999999999998777788899999999999994 776555555554    47999999998 5887666


Q ss_pred             hhccCcc-cceEEccC
Q 041406          271 EQLSELP-VLIFAAEK  285 (286)
Q Consensus       271 ~~l~~l~-L~~l~l~~  285 (286)
                      ..+.+++ |++|++++
T Consensus       133 ~~L~~~~~L~~L~L~~  148 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSD  148 (176)
T ss_dssp             HHGGGCTTCCEEEEES
T ss_pred             HHHhcCCCCCEEECCC
Confidence            7788899 99999976

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.12  E-value=7.3e-05  Score=64.60  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             ccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC
Q 041406          175 PEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN  254 (286)
Q Consensus       175 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  254 (286)
                      ..+.++.+|+.+.+.. .+.......|..+.+|+.+.+..+ ++......|..+.+|+.+.+..+ ++......|.++++
T Consensus       282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence            4577788999999964 455445567889999999999765 55344568889999999999755 55344567899999


Q ss_pred             CCEEEcccCcCccccchhccCcc-cceEEcc
Q 041406          255 LMSVMLSCNALSGSLPEQLSELP-VLIFAAE  284 (286)
Q Consensus       255 L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~  284 (286)
                      |+.+++.++...   -..+.... |+.+.+.
T Consensus       359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVA  386 (394)
T ss_dssp             CCEEEESSCHHH---HHTCBCCCCC------
T ss_pred             CCEEEECCceee---hhhhhccCCCCEEEeC
Confidence            999999987543   13444455 6666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.94  E-value=0.00052  Score=58.78  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCE
Q 041406          178 GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMS  257 (286)
Q Consensus       178 ~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  257 (286)
                      ..+..|+.+.+..+ ++......+..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.++.+|+.
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            33444555554432 22122233444444555544332 22122234445555555555555554333444555555555


Q ss_pred             EEcccCcCccccchhccCcc-cceEEc
Q 041406          258 VMLSCNALSGSLPEQLSELP-VLIFAA  283 (286)
Q Consensus       258 L~l~~n~l~~~~~~~l~~l~-L~~l~l  283 (286)
                      +.+..+ ++..-..+|.++. |+.+.+
T Consensus       315 i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          315 VTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             EEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            555433 3311123444444 444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.93  E-value=9.9e-06  Score=62.64  Aligned_cols=118  Identities=16%  Similarity=0.169  Sum_probs=73.7

Q ss_pred             cCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCccc-
Q 041406          148 LGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCSV-  221 (286)
Q Consensus       148 l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~~-  221 (286)
                      +..-+.|++|+++++ .+... ....+.+.+..-+.|+.|+|++|.+...    +.+.+...+.|++|+|+.|.|.+.. 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            455678888888875 65321 1112345566677888888888887643    3344556677888888888887443 


Q ss_pred             ---chhhhCCCCCCEEEcccc---cccc----cCCccCCCCCCCCEEEcccCcCc
Q 041406          222 ---PKAIGELRKLGILNLGST---QLNG----SIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       222 ---~~~~~~l~~L~~L~L~~n---~l~~----~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                         .+.+..-+.|++|+|++|   .+..    .+...+...++|.+|+++.|.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               234455667888888754   3332    13334555677888888766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.75  E-value=4.9e-06  Score=64.39  Aligned_cols=117  Identities=13%  Similarity=0.092  Sum_probs=76.5

Q ss_pred             ccCCCCCEEecCCC-CCCC----CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc---
Q 041406          125 GVLTQLETLSLGSN-SFTG----EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP---  196 (286)
Q Consensus       125 ~~l~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---  196 (286)
                      ..-+.|++|+++++ .+..    .+.+.+..-..|+.|++++|.+.... ...+.+.+..-+.|++|+|++|.|...   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE-ARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH-HTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH-HHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            34567888888875 6652    23345666778888888888885322 223455566677888888888888743   


Q ss_pred             -CChhccCCCCCCEEEcccC---CCCcc----cchhhhCCCCCCEEEccccccc
Q 041406          197 -LPEELSKLKFLSMLDLSEN---PLKCS----VPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       197 -~p~~~~~~~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                       +.+.+...+.|++|++++|   .+...    +...+..-++|+.|+++.|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence             3345666677888888765   33322    3345566678888888766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.68  E-value=0.00067  Score=58.05  Aligned_cols=153  Identities=11%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC
Q 041406          101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL  180 (286)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l  180 (286)
                      .....+..+.+.... .......+.....++.+.+..+ +.......+..+..|+.+.+..+ ++. +    -...+..+
T Consensus       191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I----~~~aF~~~  262 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-I----GSFLLQNC  262 (379)
T ss_dssp             CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-E----CTTTTTTC
T ss_pred             cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-e----Ccccccee
Confidence            344445555443321 2223334555666666666443 22233344556666777666544 221 1    12455566


Q ss_pred             CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406          181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML  260 (286)
Q Consensus       181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  260 (286)
                      .+|+.+.+..+ +.......|..+.+|+.+.+.++.++......|.++.+|+.+.+..+ ++......|.++++|+.+.+
T Consensus       263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            66777666543 33233345666677777777666665334456666777777777543 33333445666677776666


Q ss_pred             ccC
Q 041406          261 SCN  263 (286)
Q Consensus       261 ~~n  263 (286)
                      ..+
T Consensus       341 p~~  343 (379)
T 4h09_A          341 PKS  343 (379)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.70  E-value=0.0025  Score=45.73  Aligned_cols=57  Identities=21%  Similarity=0.256  Sum_probs=42.0

Q ss_pred             CEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406          184 EIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       184 ~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      ..++.+++.++ ..+|..+  ..+|++|+|++|.|+..-+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47788888776 2455443  246889999999998555566778889999999988765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.46  E-value=0.0066  Score=43.50  Aligned_cols=58  Identities=19%  Similarity=0.175  Sum_probs=43.4

Q ss_pred             CEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCC
Q 041406          155 KTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK  218 (286)
Q Consensus       155 ~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~  218 (286)
                      ..++.+++.++..    .+|..+  ..++++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~----~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWA----SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTT----TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccc----cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4677788777410    133332  246999999999999666677888999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.5 bits (189), Expect = 5e-17
 Identities = 70/296 (23%), Positives = 114/296 (38%), Gaps = 32/296 (10%)

Query: 19  NPDE-QSLISFKNALESSHNLVSWNKTNPHCY--WVGVSC----QRGRVIWLVLPTHSLK 71
           NP + Q+L+  K  L +   L SW  T   C   W+GV C    Q  RV  L L   +L 
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 72  G--PLSPSLFFLSSLS--DLSQNP-LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126
              P+  SL  L  L+   +     L G +   ++ L +L  L +    +S  +P  L  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 127 LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD------KLLPPEIGEL 180
           +  L TL    N+ +G +P  +  L NL  +   GN  +G + D      KL        
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 181 SLLEIFSSPSCSITGPLPEELSKLKFLSM------------LDLSENPLKCSVPKAIGEL 228
           + L     P+ +       +LS+                                 +G  
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE--QLSELPVLIFA 282
           + L  L+L + ++ G++P  L + + L S+ +S N L G +P+   L    V  +A
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 1e-09
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 111 LGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164
           L  N++   +P  L  L  L +L++  N+  GEIP + G L+       + N+ 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 135 LGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI--FSSPSCS 192
           L +N   G +P  L +LK L +L++S N   G +      P+ G L   ++  +++  C 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI------PQGGNLQRFDVSAYANNKCL 304

Query: 193 ITGPLP 198
              PLP
Sbjct: 305 CGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 83  SLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
           +  DL  N ++G L + ++ LK L  L++  N L   +P   G L + +  +  +N    
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC 305

Query: 143 EIP 145
             P
Sbjct: 306 GSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 152 KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLD 211
           KNL  LDL  N   GT     LP  + +L  L   +    ++ G +P +   L+   +  
Sbjct: 244 KNLNGLDLRNNRIYGT-----LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 212 LSENPLKCSVP 222
            + N   C  P
Sbjct: 298 YANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 8e-06
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
           +  I G LP+ L++LKFL  L++S N L   +P   G L++  +    + +     P  L
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP--L 309

Query: 250 GKC 252
             C
Sbjct: 310 PAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 8e-12
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 18/177 (10%)

Query: 104 KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE 163
             L +LSL  NQL D     L  LT L  L L +N  +   P  L  L  L  L L  N+
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK 223
            +           +  L+ L         +    P     LK L+ L L  N +    P 
Sbjct: 275 ISN-------ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP- 324

Query: 224 AIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP-EQLSELPVL 279
            +  L KL  L   + +++    + L    N+  +    N +S   P   L+ +  L
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 4e-10
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
            L  N +       VS+L +L++L    N++SD   S L  LT +  LS G N  +   P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 146 SELGKLKNLKTLDLSGN 162
             L  L  +  L L+  
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 6e-10
 Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 33/174 (18%)

Query: 62  WLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP 121
            L L  + LK   + +     +  DL+ N +       +S L +L +L LG NQ+S+  P
Sbjct: 223 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

Query: 122 --------------------SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161
                               S +  L  L  L+L  N+ +   P  +  L  L+ L  + 
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338

Query: 162 NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSEN 215
           N+ +           +  L+ +   S+    I+   P  L+ L  ++ L L++ 
Sbjct: 339 NKVSD-------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 8e-09
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 26  ISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLS 85
           +     L S  NL   +  N     +       ++  L L  + +       L  L++L+
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 288

Query: 86  DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP 145
           +L  N    +    +SNLK L  L+L  N +SD  P  +  LT+L+ L   +N  +    
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--V 344

Query: 146 SELGKLKNLKTLDLSGNEFNG 166
           S L  L N+  L    N+ + 
Sbjct: 345 SSLANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 101 SNLKRLKQLSLGENQLSDFVP-SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
           + L    +  LG+  ++D V  + L  +T L+   LG  S  G     +  L NL  ++ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 73

Query: 160 SGNEFNG 166
           S N+   
Sbjct: 74  SNNQLTD 80

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 3e-10
 Identities = 46/236 (19%), Positives = 74/236 (31%), Gaps = 10/236 (4%)

Query: 32  LESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNP 91
           L       +         + G++      +       S+       L  L +L  L +  
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL-HLDRCG 116

Query: 92  LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKL 151
           L          L  L+ L L +N L          L  L  L L  N  +         L
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 152 KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLD 211
            +L  L L  N         + P    +L  L      + +++    E L+ L+ L  L 
Sbjct: 177 HSLDRLLLHQNRVAH-----VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 212 LSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267
           L++NP  C   +A      L      S+++  S+P  L          L+ N L G
Sbjct: 232 LNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 29/160 (18%), Positives = 44/160 (27%), Gaps = 6/160 (3%)

Query: 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179
           VP  +   +Q   + L  N  +    +     +NL          +  +         G 
Sbjct: 26  VPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTI----LWLHSNVLARIDAAAFTGL 79

Query: 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST 239
             L ++  S +  +    P     L  L  L L    L+   P     L  L  L L   
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 240 QLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
            L            NL  + L  N +S         L  L
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 4/172 (2%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
            +++ L  N++S    +       L  L L SN       +    L  L+ LDLS N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
                 + P     L  L       C +    P     L  L  L L +N L+       
Sbjct: 94  R----SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 226 GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277
            +L  L  L L   +++           +L  ++L  N ++   P    +L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 4/140 (2%)

Query: 27  SFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSD 86
           +F++    +H  +  N+ +               + L     +   P +           
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 87  LSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPS 146
           L  N L    +  ++ L+ L+ L L +N           +   L+     S+     +P 
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 147 ELGKLKNLKTLDLSGNEFNG 166
               L       L+ N+  G
Sbjct: 267 R---LAGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 8e-10
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 13/178 (7%)

Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
              L L  N++++        L  L TL L +N  +   P     L  L+ L LS N+  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS--VPK 223
                  LP ++ +             IT       + L  + +++L  NPLK S     
Sbjct: 93  E------LPEKMPKTLQELRVH--ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 224 AIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
           A   ++KL  + +  T +  +IP  L    +L  + L  N ++      L  L  L  
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAK 199

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 20/240 (8%)

Query: 47  HCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRL 106
            C+   V C    +         +   L P    L    DL  N +         NLK L
Sbjct: 9   QCHLRVVQCSDLGL-------EKVPKDLPPDTALL----DLQNNKITEIKDGDFKNLKNL 57

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
             L L  N++S   P     L +LE L L  N            L+ L+  +    +   
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 117

Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
           +V + L         ++    +     +G        +K LS + +++  +  ++P+ + 
Sbjct: 118 SVFNGL------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL- 169

Query: 227 ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286
               L  L+L   ++     A L    NL  + LS N++S      L+  P L      N
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 7/201 (3%)

Query: 40  SWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLS--DLSQNPLFGQLS 97
             N+       V     +  V+ L        G  + +   +  LS   ++   +    +
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TT 164

Query: 98  RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTL 157
                   L +L L  N+++    + L  L  L  L L  NS +      L    +L+ L
Sbjct: 165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 224

Query: 158 DLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217
            L+ N+             I  + L     S   S     P   +K    S + L  NP+
Sbjct: 225 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

Query: 218 KCS--VPKAIGELRKLGILNL 236
           +     P     +     + L
Sbjct: 285 QYWEIQPSTFRCVYVRAAVQL 305

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 106 LKQLSLGENQLSDF-VPSQLGVLTQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLS 160
           ++ L +   +LSD      L +L Q + + L     T      I S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT 194
            NE             +G   +L+   +PSC I 
Sbjct: 64  SNELGD----------VGVHCVLQGLQTPSCKIQ 87

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 81  LSSLSDLSQNPL-FGQLSRQVSNLKRLKQLSLGENQLSD----FVPSQLGVLTQLETLSL 135
           + SL D+    L   + +  +  L++ + + L +  L++     + S L V   L  L+L
Sbjct: 4   IQSL-DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 136 GSNSFTGEIPSELGKL-----KNLKTLDLSGNEFN 165
            SN         + +        ++ L L      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 1e-06
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 28/107 (26%)

Query: 128 TQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLL 183
           + L  L L     +      + + L    +L+ LDLS N             + G L L+
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG----------DAGILQLV 418

Query: 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRK 230
           E    P C               L  L L +      +   +  L K
Sbjct: 419 ESVRQPGCL--------------LEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 153 NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG----PLPEELSKLKFLS 208
           ++++LD+   E +     +LLP     L   ++     C +T      +   L     L+
Sbjct: 3   DIQSLDIQCEELSDARWAELLP----LLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 209 MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243
            L+L  N L       + +  +     +    L  
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 4e-05
 Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 14/135 (10%)

Query: 36  HNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQ 95
               S   +        +  Q             L   L      L  L  L+   +   
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL-WLADCDVSDS 384

Query: 96  ----LSRQVSNLKRLKQLSLGENQLSDFVPSQLG-----VLTQLETLSLGSNSFTGEIPS 146
               L+  +     L++L L  N L D    QL          LE L L    ++ E+  
Sbjct: 385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

Query: 147 ELGKLK----NLKTL 157
            L  L+    +L+ +
Sbjct: 445 RLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 207 LSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLNG----SIPAELGKCENLMSVMLS 261
           +  LD+    L  +   + +  L++  ++ L    L       I + L     L  + L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 262 CNALSGSLPEQLSEL 276
            N L       + + 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 14/99 (14%)

Query: 87  LSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPS 146
              N    ++         L++L++  N+L +          +LE L    N    E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLA-EVPE 321

Query: 147 ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185
                 NLK L +  N           P     +  L +
Sbjct: 322 LPQ---NLKQLHVEYNPLRE------FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 38/118 (32%)

Query: 114 NQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLL 173
           N  S+ + S   +   LE L++ +N    E+P+       L+ L  S N           
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE------- 318

Query: 174 PPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231
                                  +PE    LK L    +  NPL+   P     +  L
Sbjct: 319 -----------------------VPELPQNLKQL---HVEYNPLR-EFPDIPESVEDL 349

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 155 KTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE 214
           +TLDL+G   +  V  +LL   +           P   +  PL E  S  + +  +DLS 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRC------PRSFMDQPLAEHFSPFR-VQHMDLSN 55

Query: 215 NPLKCSVPKAI-GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCN 263
           + ++ S    I  +  KL  L+L   +L+  I   L K  NL+ + LS  
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 109 LSLGENQLSDFVPSQLGVLTQLETLSLG-SNSFTGEIPSELGKLKNLKTLDLSGNEFNGT 167
           L L    L    P   G L     ++     SF  +  +E      ++ +DLS +     
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-- 59

Query: 168 VRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLD 211
                L   + + S L+  S     ++ P+   L+K   L  L+
Sbjct: 60  --VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 20/199 (10%)

Query: 99  QVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLD 158
           +VS +    +++  +  L+  +P  L        L L  N       + L     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 159 LSGNEFNGTVRDKLLP----------------PEIGELSLLEIFSSPSCSITGPLPEELS 202
           L   E      D  LP                     L  L +       +T      L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC 262
            L  L  L L  N LK   P  +    KL  L+L +  L       L   ENL +++L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 263 NALSGSLPEQLSELPVLIF 281
           N+L  ++P+      +L F
Sbjct: 182 NSLY-TIPKGFFGSHLLPF 199

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 114 NQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
           N L++     L  L  L+TL L  NS    IP        L    L GN + 
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 16/83 (19%), Positives = 21/83 (25%), Gaps = 30/83 (36%)

Query: 138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL 197
           N+ T      L  L+NL TL L  N                                  +
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY------------------------------TI 187

Query: 198 PEELSKLKFLSMLDLSENPLKCS 220
           P+       L    L  NP  C+
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCN 210

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 99  QVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLD 158
            ++NL +L  L   +N++SD  P  L  L  L  + L +N  +   P  L    NL  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 159 LS 160
           L+
Sbjct: 224 LT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161
            L    +++ G++ ++D V      L  + TLS      T      +  L NL  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 162 NEFNGTVRDKLLP 174
           N+       K L 
Sbjct: 73  NQITDLAPLKNLT 85

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
           + L L    L+      L  L  +  L L  N      P+ L  L+ L+ L  S N    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
                 +        L E+    +        + L     L +L+L  N L C       
Sbjct: 58  ------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQE 110

Query: 227 ELRKL 231
            L ++
Sbjct: 111 RLAEM 115

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 104 KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGE----IPSELGKLKNLKTLDL 159
           K LK  ++          + L     ++ + L  N+   E    +   +   K+L+  + 
Sbjct: 8   KSLKLDAITTEDEKSV-FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 160 SGN 162
           S  
Sbjct: 67  SDI 69

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 111 LGENQLSDFVPSQLG------VLTQLETLSLGSNSFTGEIPSEL-----GKLKNLKTLDL 159
           L +  LS    + +           L+TL L  N    +    L      K+ +L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 160 SGNEF 164
           +GN F
Sbjct: 310 NGNRF 314

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 4/141 (2%)

Query: 95  QLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNL 154
           + + Q +N  R ++L L   ++   + +    L Q + +    N            L+ L
Sbjct: 9   EQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRL 65

Query: 155 KTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE 214
           KTL ++ N                   +L   S        P    L  L +L +L    
Sbjct: 66  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPV 124

Query: 215 NPLKCSVPKAIGELRKLGILN 235
              K      I ++ ++ +L+
Sbjct: 125 TNKKHYRLYVIYKVPQVRVLD 145

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
                  + +L +  ++D V      L  ++ +   ++         +  L N+  L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 161 GNEFNGTVRDKLLPP 175
           GN+         L  
Sbjct: 77  GNKLTDIKPLANLKN 91

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 121 PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL 180
                 L QL+TL+L  N  +  +P     L +L +L+L+ N FN           + + 
Sbjct: 95  NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK 154

Query: 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
           SL         +     P ++  ++     DL  +  KCS   + G
Sbjct: 155 SLN------GGAARCGAPSKVRDVQIK---DLPHSEFKCSSENSEG 191

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPS 146
                   L +   ++       L  L +L   S  +     ++P+
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.004
 Identities = 5/40 (12%), Positives = 9/40 (22%)

Query: 124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE 163
               +    L +            L  LK L+       +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.1e-39  Score=272.92  Aligned_cols=263  Identities=27%  Similarity=0.441  Sum_probs=215.8

Q ss_pred             CChhhHHHHHHHHHhccCCCCCCCCCCCCCCC--CccceEecCC----CEEEEEcCCCCccc--ccCccccccccc--cc
Q 041406           17 EQNPDEQSLISFKNALESSHNLVSWNKTNPHC--YWVGVSCQRG----RVIWLVLPTHSLKG--PLSPSLFFLSSL--SD   86 (286)
Q Consensus        17 ~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~----~l~~l~l~~~~l~~--~~~~~~~~l~~l--L~   86 (286)
                      |.++|++||++||+++.++..+.+|..+.++|  .|+||+|+..    +|+.|+|+++++.|  .+|++++++++|  |+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~   82 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY   82 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccc
Confidence            57899999999999998876689998777667  5999999864    79999999999988  588999999999  99


Q ss_pred             cCC-CCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccc
Q 041406           87 LSQ-NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN  165 (286)
Q Consensus        87 l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  165 (286)
                      +++ |++.|.+|..|+++++|++|++++|.+.+..+..+..+..|+++++++|.+.+.+|..+..+++++.+++++|.+.
T Consensus        83 Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_          83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             cccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccc
Confidence            986 8899999999999999999999999999988888999999999999999999899999999999999999999988


Q ss_pred             cccCCCCCCccccCCCCC-CEEEccCCcccc-----------------------cCChhccCCCCCCEEEcccCCCCccc
Q 041406          166 GTVRDKLLPPEIGELSLL-EIFSSPSCSITG-----------------------PLPEELSKLKFLSMLDLSENPLKCSV  221 (286)
Q Consensus       166 ~~~~~~~~~~~~~~l~~L-~~L~l~~n~~~~-----------------------~~p~~~~~~~~L~~L~l~~n~l~~~~  221 (286)
                      +.+     |..+..+..+ +.+++++|++++                       ..|..+..+++++.+++++|.+.+.+
T Consensus       163 ~~i-----p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         163 GAI-----PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             EEC-----CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             ccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            765     4555555554 556666665554                       44445556667777777777776544


Q ss_pred             chhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          222 PKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       222 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                       ..+..+++|+.|++++|+++|.+|..++.+++|++|++++|+++|.+|+ +.+++ |+.+++++|
T Consensus       238 -~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             -GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred             -cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence             3566777888888888888877888788888888888888888877774 46667 777777766

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=4.9e-28  Score=202.98  Aligned_cols=206  Identities=23%  Similarity=0.344  Sum_probs=185.7

Q ss_pred             CEEEEEcCC-CCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406           59 RVIWLVLPT-HSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL  135 (286)
Q Consensus        59 ~l~~l~l~~-~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  135 (286)
                      +++.|+|++ |++.|.+|..+.++++|  |++++|.+.+..+..+..+.+|+.+++++|.+...+|..+..++.++++++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            789999997 88999999999999999  999999999999999999999999999999999989999999999999999


Q ss_pred             CCCCCCCCCCcccCCCCCC-CEEEccCCccccccCCC------------------CCCccccCCCCCCEEEccCCccccc
Q 041406          136 GSNSFTGEIPSELGKLKNL-KTLDLSGNEFNGTVRDK------------------LLPPEIGELSLLEIFSSPSCSITGP  196 (286)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~n~~~~~  196 (286)
                      ++|.+.+.+|+.+..+.++ +.+++++|++++..+..                  .+|..+..+++++.+++++|.+.+.
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999988888775 88999998887654322                  4567777889999999999999876


Q ss_pred             CChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          197 LPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       197 ~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +| .+..+++|+.|++++|.++|.+|..++++++|++|+|++|+++|.+|. ++.+++|+.+++++|+..
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEE
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccc
Confidence            55 588889999999999999999999999999999999999999999985 678899999999999743

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-24  Score=177.89  Aligned_cols=197  Identities=21%  Similarity=0.203  Sum_probs=95.0

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC-CCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG-SNSFTGEIPSELGKLKNLKTLDLSGNE  163 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~~n~  163 (286)
                      |++++|+++...+..|.++++|++|++++|.+....+..+..+..++.+... .+.++...+..+..+++|++|++++|.
T Consensus        37 L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~  116 (284)
T d1ozna_          37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG  116 (284)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcc
Confidence            4555555544333445555555555555555554444444444555554443 233332333444455555555555554


Q ss_pred             cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406          164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG  243 (286)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  243 (286)
                      +....     +..+....+|+.+++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|++++
T Consensus       117 ~~~~~-----~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         117 LQELG-----PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccc-----ccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            43211     2333444455555555555553333444445555555555555544334444455555555555555554


Q ss_pred             cCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          244 SIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       244 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      ..|..|..+++|++|++++|++.+..+.++..++ |++|++++|
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            4455555555555555555555544444455555 555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.6e-24  Score=175.59  Aligned_cols=216  Identities=21%  Similarity=0.168  Sum_probs=186.6

Q ss_pred             CCccceEecCC----CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEcc-CCCCCCCC
Q 041406           48 CYWVGVSCQRG----RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLG-ENQLSDFV  120 (286)
Q Consensus        48 c~w~gv~c~~~----~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~-~n~l~~~~  120 (286)
                      |+..|++-.+.    .++.|+|++|++++..+..|..++.+  +++++|.+....+..+..+..++.+... .+.+....
T Consensus        18 c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          18 CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             CCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             cCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            55555444332    68999999999997666689999999  9999999998888888889999998775 55677766


Q ss_pred             ccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChh
Q 041406          121 PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEE  200 (286)
Q Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~  200 (286)
                      +..|..+++|++|++++|.+....+..+....+|+.+++++|.+++..     +..+..+++|++|++++|.+.+..+..
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~-----~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----DDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccC-----hhHhccccchhhcccccCcccccchhh
Confidence            788999999999999999998666667888999999999999997432     466788899999999999999777888


Q ss_pred             ccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 041406          201 LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS  268 (286)
Q Consensus       201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  268 (286)
                      +..+++|+.+++++|.+++..|..|+.+++|++|++++|.+.+..+..+..+++|++|++++|++...
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            99999999999999999988899999999999999999999977778899999999999999988743

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-23  Score=169.84  Aligned_cols=196  Identities=24%  Similarity=0.217  Sum_probs=168.1

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      ...+++.++++++ .+|+.+..  .+  |++++|.+.+..+..|.++++|++|++++|.++. ++ .++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp~--~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCCT--TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcCc--CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            4556788888888 46776653  44  8999999987777889999999999999999986 33 35789999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      +|+++ ..+..+..+++|+.|++++|.+....     +..+..+.++++|++++|.+....+..+..+++++.+++++|.
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP-----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCC-----SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccc-ccccccccccccccccccccccceee-----ccccccccccccccccccccceeccccccccccchhccccccc
Confidence            99998 56778889999999999999886432     4667788999999999999997667778889999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +++..+..++.+++|++|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            99777778899999999999999999 88888889999999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-23  Score=171.36  Aligned_cols=190  Identities=27%  Similarity=0.266  Sum_probs=166.7

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      .+.++++++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++ .++ .+..+++|+.|++++|++
T Consensus        15 v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          15 VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCC
T ss_pred             EEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccccccc
Confidence            577778886 4676554  57999999999999876678999999999999999998 454 357899999999999998


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      .+      .+..+..+++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|++++.
T Consensus        90 ~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          90 QS------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             SS------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cc------cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            64      356788899999999999999877777888999999999999999866666778899999999999999977


Q ss_pred             CCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406          245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN  286 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N  286 (286)
                      .+..+..+++|++|++++|+++ .+|+.+..++ |+.|+|++|
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCC
Confidence            7778899999999999999999 8999888899 999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.1e-23  Score=172.05  Aligned_cols=226  Identities=20%  Similarity=0.227  Sum_probs=178.6

Q ss_pred             CCccceEecC-----------CCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCC
Q 041406           48 CYWVGVSCQR-----------GRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGEN  114 (286)
Q Consensus        48 c~w~gv~c~~-----------~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  114 (286)
                      |.|.++.|..           ..++.|+|++|+++...+.+|..+++|  +++++|.+....|..|..+++|+.|++++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            6788888863           268899999999986655678999999  999999998888888999999999999999


Q ss_pred             CCCCCCccccccCCCCCEEecCCCCCCCC--------------------------CCcccCCCCCCCEEEccCCcccccc
Q 041406          115 QLSDFVPSQLGVLTQLETLSLGSNSFTGE--------------------------IPSELGKLKNLKTLDLSGNEFNGTV  168 (286)
Q Consensus       115 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~l~~l~~L~~L~l~~n~~~~~~  168 (286)
                      +++. +|..  ....++.|++.+|.+.+.                          .+..+..+++|+.+++++|.+..  
T Consensus        90 ~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--  164 (305)
T d1xkua_          90 QLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--  164 (305)
T ss_dssp             CCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--
T ss_pred             ccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc--
Confidence            9886 3432  234566677666655521                          12234556788888888887642  


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCcc
Q 041406          169 RDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE  248 (286)
Q Consensus       169 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  248 (286)
                          +|..  .++++++|++++|...+..+..+..++.++.|++++|.+++..+..+..+++|++|+|++|+++ .+|..
T Consensus       165 ----l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~  237 (305)
T d1xkua_         165 ----IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  237 (305)
T ss_dssp             ----CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             ----cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence                2333  2578999999999998888888999999999999999999777788889999999999999998 67888


Q ss_pred             CCCCCCCCEEEcccCcCccccch-hc------cCcc-cceEEccCC
Q 041406          249 LGKCENLMSVMLSCNALSGSLPE-QL------SELP-VLIFAAEKN  286 (286)
Q Consensus       249 ~~~~~~L~~L~l~~n~l~~~~~~-~l------~~l~-L~~l~l~~N  286 (286)
                      +..+++|++|++++|+++ .++. .|      ..++ |+.|++++|
T Consensus       238 l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             TTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCC
Confidence            999999999999999998 4432 32      3455 999999887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1.8e-19  Score=149.69  Aligned_cols=196  Identities=20%  Similarity=0.241  Sum_probs=154.3

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC-----------------
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF-----------------  119 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------  119 (286)
                      +++.|+++++.+....|..|..++.+  +++++|++.. +|..  ..+.++.|.+..|.+...                 
T Consensus        56 ~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~  132 (305)
T d1xkua_          56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG  132 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             cccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccc
Confidence            78899999998887777788888888  8888887753 3322  223455555555544321                 


Q ss_pred             ---------CccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC
Q 041406          120 ---------VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS  190 (286)
Q Consensus       120 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~  190 (286)
                               .+..+..+++|+++++++|.+. .+|..  .+++++.|++++|...+..     +..+..++.+++|++++
T Consensus       133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         133 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVD-----AASLKGLNNLAKLGLSF  204 (305)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEEC-----TGGGTTCTTCCEEECCS
T ss_pred             cccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCC-----hhHhhcccccccccccc
Confidence                     2334566789999999999987 56554  3679999999999887554     57889999999999999


Q ss_pred             CcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCcc------CCCCCCCCEEEcccCc
Q 041406          191 CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAE------LGKCENLMSVMLSCNA  264 (286)
Q Consensus       191 n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~l~~n~  264 (286)
                      |.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++......      ....++|+.|++++|+
T Consensus       205 n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            9999888888999999999999999998 67889999999999999999998432222      3456889999999999


Q ss_pred             Cc
Q 041406          265 LS  266 (286)
Q Consensus       265 l~  266 (286)
                      +.
T Consensus       284 ~~  285 (305)
T d1xkua_         284 VQ  285 (305)
T ss_dssp             SC
T ss_pred             Cc
Confidence            86

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.2e-19  Score=155.12  Aligned_cols=209  Identities=25%  Similarity=0.332  Sum_probs=140.7

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCC----------------
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFV----------------  120 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~----------------  120 (286)
                      +++.|++++|++++..  .+.++++|  |++++|.+.+..+  ++.+++|+.|+++++.+++..                
T Consensus        67 nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
T d2omza2          67 NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  142 (384)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            7888999988888543  37778888  8888888865432  667777777777666543210                


Q ss_pred             -----------------------------------------------cccc----------------------ccCCCCC
Q 041406          121 -----------------------------------------------PSQL----------------------GVLTQLE  131 (286)
Q Consensus       121 -----------------------------------------------~~~~----------------------~~l~~L~  131 (286)
                                                                     ...+                      ..+++|+
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~  222 (384)
T d2omza2         143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD  222 (384)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCC
T ss_pred             cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCCC
Confidence                                                           0111                      2234455


Q ss_pred             EEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC--------------
Q 041406          132 TLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL--------------  197 (286)
Q Consensus       132 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--------------  197 (286)
                      +|++++|.++ .+ ..+..+++|+.+++++|.+++.       ..+..+++|++++++++.+.+..              
T Consensus       223 ~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~-------~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         223 ELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNL-------APLSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             EEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCC-------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             EEECCCCCCC-Cc-chhhcccccchhccccCccCCC-------CcccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            5555555544 22 2345566666666666666532       23555666777777666654321              


Q ss_pred             ------ChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccch
Q 041406          198 ------PEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE  271 (286)
Q Consensus       198 ------p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  271 (286)
                            ...+..++++++|++++|.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..| 
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-
Confidence                  12355567888888888888753 2 3788899999999999988 444 58889999999999999995443 


Q ss_pred             hccCcc-cceEEccCC
Q 041406          272 QLSELP-VLIFAAEKN  286 (286)
Q Consensus       272 ~l~~l~-L~~l~l~~N  286 (286)
                       +.+++ |+.|++++|
T Consensus       369 -l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 -LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GTTCTTCSEEECCCE
T ss_pred             -hccCCCCCEeeCCCC
Confidence             78899 999999987

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=2.4e-19  Score=142.67  Aligned_cols=200  Identities=23%  Similarity=0.338  Sum_probs=145.9

Q ss_pred             EEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCC
Q 041406           63 LVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF  140 (286)
Q Consensus        63 l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  140 (286)
                      ++++.+.+++..  .+..+..+  +++.+|.+.. + +.+..+++|++|++++|.+.+..+  +..+++++++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            344444444332  23445555  6667777654 3 347788889999998888876433  78888888998888887


Q ss_pred             CCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcc
Q 041406          141 TGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS  220 (286)
Q Consensus       141 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~  220 (286)
                      + .++ .+..+++|+.++++++...+       ...+...+.++.+.++++.+...  ..+..+++|++|++++|.+++.
T Consensus        98 ~-~i~-~l~~l~~L~~l~l~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2          98 K-NVS-AIAGLQSIKTLDLTSTQITD-------VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             S-CCG-GGTTCTTCCEEECTTSCCCC-------CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC
T ss_pred             c-ccc-cccccccccccccccccccc-------cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc
Confidence            7 443 47788888898888887653       23466678888888888877643  3356778899999999988643


Q ss_pred             cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406          221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       221 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                        ..++++++|++|++++|++++ ++. +..+++|++|++++|+++ .++. +.+++ |++|++++
T Consensus       167 --~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 --TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             --hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence              347788999999999998874 443 778899999999999988 4543 78888 99998874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=7.1e-19  Score=150.26  Aligned_cols=216  Identities=25%  Similarity=0.307  Sum_probs=156.2

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      ++++|++++++++. + +.+..+++|  |++++|.+++..  .++++++|++|++++|.+.+..  .+..+++|+.++++
T Consensus        45 ~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~  118 (384)
T d2omza2          45 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLF  118 (384)
T ss_dssp             TCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccccc
Confidence            79999999999984 2 467888899  999999997653  3899999999999999998743  37899999999998


Q ss_pred             CCCCCCCCC---------------------------------------------------------------cccCCCCC
Q 041406          137 SNSFTGEIP---------------------------------------------------------------SELGKLKN  153 (286)
Q Consensus       137 ~n~l~~~~~---------------------------------------------------------------~~l~~l~~  153 (286)
                      ++.+++..+                                                               .....+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (384)
T d2omza2         119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  198 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            876652100                                                               11222345


Q ss_pred             CCEEEccCCccccccCCC---------------CCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCC
Q 041406          154 LKTLDLSGNEFNGTVRDK---------------LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK  218 (286)
Q Consensus       154 L~~L~l~~n~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~  218 (286)
                      ++.+++++|.+++..+..               .-...+..+++|+.+++++|.+++..  .+..+++|++++++++.++
T Consensus       199 ~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~  276 (384)
T d2omza2         199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS  276 (384)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC
T ss_pred             cceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC--cccccccCCEeeccCcccC
Confidence            555555555544321100               01235667788888888888887533  3667788888888888776


Q ss_pred             cccc--------------------hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-
Q 041406          219 CSVP--------------------KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-  277 (286)
Q Consensus       219 ~~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-  277 (286)
                      +..+                    ..+..+++++.|++++|++++. + .+..+++|++|++++|+++ .++ .+..++ 
T Consensus       277 ~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~  352 (384)
T d2omza2         277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTN  352 (384)
T ss_dssp             CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTT
T ss_pred             CCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCC
Confidence            3211                    2345567888888888888753 3 3778899999999999998 454 588899 


Q ss_pred             cceEEccCC
Q 041406          278 VLIFAAEKN  286 (286)
Q Consensus       278 L~~l~l~~N  286 (286)
                      |++|++++|
T Consensus       353 L~~L~l~~N  361 (384)
T d2omza2         353 INWLSAGHN  361 (384)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            999999887

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.3e-18  Score=135.24  Aligned_cols=180  Identities=24%  Similarity=0.331  Sum_probs=146.3

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      .++..+.+.+.++.  ..+.+|++|++++|.++.. + .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccc
Confidence            46677777666553  3567899999999998874 3 37889999999999999984 44 367899999999999998


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ++      ++ .+..+++|+.+++++|.+.. + ..+..++.++.++++.|.+++  +..+..+++|+++++++|++++ 
T Consensus       103 ~~------l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-  170 (210)
T d1h6ta2         103 KD------LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-  170 (210)
T ss_dssp             CC------GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-
T ss_pred             cc------cc-cccccccccccccccccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc-
Confidence            64      23 57889999999999998873 3 357788899999999999874  3456788999999999999984 


Q ss_pred             CCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406          245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK  285 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~  285 (286)
                      ++ .+..+++|++|++++|+++ .++ .+..++ |++|++++
T Consensus       171 i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            43 3788999999999999998 565 588999 99999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.7e-18  Score=132.30  Aligned_cols=176  Identities=22%  Similarity=0.335  Sum_probs=142.7

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      ..++.+.+.+....  ..++++++|+++++.++..  +.+..+++|++|++++|++++ ++. +..+++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~~--~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEECH--HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccCH--HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-ccc-ccCCccccccccccccc
Confidence            56677777665443  4678999999999998873  347889999999999999984 443 88999999999999987


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ..      + ..+.+++.|+++++++|.+...  ..+..+++|+.+++++|.+. .+ ..+..+++++.|++.+|++++ 
T Consensus        97 ~~------~-~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~-  164 (199)
T d2omxa2          97 AD------I-TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTD-  164 (199)
T ss_dssp             CC------C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCC-
T ss_pred             cc------c-cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccC-
Confidence            53      2 3578899999999999988743  34778899999999999987 34 467889999999999999984 


Q ss_pred             CCccCCCCCCCCEEEcccCcCccccchhccCcc-cceE
Q 041406          245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIF  281 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l  281 (286)
                      ++ .++++++|++|++++|+++ .++ .+..++ |+.|
T Consensus       165 l~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 LK-PLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence            33 3889999999999999998 454 577888 8765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=5e-18  Score=133.27  Aligned_cols=159  Identities=26%  Similarity=0.298  Sum_probs=124.4

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      +++++|.+... + .+..+++|++|++++|.+++. + .+..+++|++|++++|+++ .++ .+..+++|+.|++.+|.+
T Consensus        51 L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          51 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             EECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCC
T ss_pred             EECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-cccccccccccccccccc
Confidence            56666665432 2 367788999999999988874 3 3678889999999999887 454 478889999999998887


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ..       ...+..++.++.+++++|.+++  +..+..+++|+++++++|.+++ ++ .+.++++|+.|++++|.++ .
T Consensus       125 ~~-------~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         125 SD-------INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             CC-------CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-B
T ss_pred             cc-------cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-C
Confidence            53       2467788899999999998874  3346678899999999999974 43 4788999999999999987 4


Q ss_pred             CCccCCCCCCCCEEEccc
Q 041406          245 IPAELGKCENLMSVMLSC  262 (286)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~  262 (286)
                      ++ .+..+++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            55 488899999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.5e-17  Score=132.10  Aligned_cols=183  Identities=23%  Similarity=0.341  Sum_probs=153.1

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      +++.|++.+++++. + +.+..+++|  +++++|.+.+..+  +..+++++++++++|.++. + +.+..+++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccc
Confidence            79999999999985 4 468899999  9999999976544  8899999999999999876 3 357889999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP  216 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  216 (286)
                      ++...+.  ..+...+.++.+.++++.+..       ...+...++|++|++++|.+.+.  ..+..+++|+.|++++|.
T Consensus       116 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         116 STQITDV--TPLAGLSNLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             TSCCCCC--GGGTTCTTCCEEECCSSCCCC-------CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ccccccc--chhccccchhhhhchhhhhch-------hhhhccccccccccccccccccc--hhhcccccceecccCCCc
Confidence            9987632  346778899999999988753       24577889999999999998743  337889999999999999


Q ss_pred             CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 041406          217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC  262 (286)
Q Consensus       217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  262 (286)
                      +++ ++ .++++++|++|++++|++++ ++. +..+++|++|++++
T Consensus       185 l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             cCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            984 43 48899999999999999984 443 88999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-18  Score=138.66  Aligned_cols=211  Identities=13%  Similarity=0.083  Sum_probs=151.6

Q ss_pred             CCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCC-ccccccCCCCCEEecCC-CCCC
Q 041406           66 PTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFV-PSQLGVLTQLETLSLGS-NSFT  141 (286)
Q Consensus        66 ~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n~l~  141 (286)
                      ++.+++ .+|..+.  +++  +++++|.+....+..|.++++|++|++++|.+...+ +..|..++.++++.+.. +.+.
T Consensus        16 ~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          16 QESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             ESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             eCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            344454 4555543  345  899999997666677899999999999999987644 45688899999998865 5677


Q ss_pred             CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCC-CCCCEEEcccCCCCcc
Q 041406          142 GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKL-KFLSMLDLSENPLKCS  220 (286)
Q Consensus       142 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~-~~L~~L~l~~n~l~~~  220 (286)
                      ...+..+..+++|+++++++|.+....+    ...+..+..+..+...++.+....+..+..+ ..++.+++++|.++ .
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~----~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~  167 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  167 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCCC----CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             ccccccccccccccccccchhhhccccc----ccccccccccccccccccccccccccccccccccceeeeccccccc-c
Confidence            6667778999999999999998863221    2233445566666667777775555555554 37888999999998 4


Q ss_pred             cchhhhCCCCCCEE-EcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEcc
Q 041406          221 VPKAIGELRKLGIL-NLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAE  284 (286)
Q Consensus       221 ~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~  284 (286)
                      ++......++++.+ .+.+|.++...+..|.++++|++|++++|+++...+..+.+++ |+.+++.
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            55444455666555 5677888844445688899999999999999943334688888 7776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2.6e-17  Score=128.01  Aligned_cols=155  Identities=28%  Similarity=0.390  Sum_probs=117.7

Q ss_pred             cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406           85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus        85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      |++++|.+...  +.+..+++|++|++++|.+++..+  +.++++|++|++++|.+. .++ .+..+++|+.++++++..
T Consensus        45 L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          45 LQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             EECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccccccc
Confidence            45555555432  236778889999999998887432  788889999999988876 444 478888999999988877


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406          165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS  244 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  244 (286)
                      ..       ...+..+++|+.+++++|.+.. + +.+..+++|+.|++.+|.+++ + ..++++++|++|++++|++++ 
T Consensus       119 ~~-------~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l-~~l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         119 TD-------IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-L-KPLANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             CC-------CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-
T ss_pred             cc-------ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-C-ccccCCCCCCEEECCCCCCCC-
Confidence            53       2457778899999999998863 3 357788899999999998874 3 347888999999999999874 


Q ss_pred             CCccCCCCCCCCEE
Q 041406          245 IPAELGKCENLMSV  258 (286)
Q Consensus       245 ~~~~~~~~~~L~~L  258 (286)
                      ++ .+..+++|++|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            43 47778888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=8.6e-18  Score=130.00  Aligned_cols=153  Identities=20%  Similarity=0.290  Sum_probs=107.1

Q ss_pred             CCCCEEEccCCCCCCCC-ccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCC
Q 041406          104 KRLKQLSLGENQLSDFV-PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL  182 (286)
Q Consensus       104 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~  182 (286)
                      +++++|++++|.++..+ +..|..+++|++|++++|.+....+..+..+++|++|++++|++....     +..|.++++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~-----~~~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-----NKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-----SSSSTTCTT
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccC-----HHHHhCCCc
Confidence            46777888888876533 455677888888888888877666677777888888888888776432     456777888


Q ss_pred             CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccch-hhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcc
Q 041406          183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK-AIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLS  261 (286)
Q Consensus       183 L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  261 (286)
                      |++|++++|.+++..+..|..+++|+++++++|.+...... .+.  ..++.+.+..+.++...|..+   ..++.++++
T Consensus       104 L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~  178 (192)
T d1w8aa_         104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSKV---RDVQIKDLP  178 (192)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTTT---TTSBGGGSC
T ss_pred             ccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCChhh---cCCEeeecC
Confidence            88888888888877777788888899999988888643221 111  124445566666665556543   456677788


Q ss_pred             cCcCc
Q 041406          262 CNALS  266 (286)
Q Consensus       262 ~n~l~  266 (286)
                      .|.+.
T Consensus       179 ~n~l~  183 (192)
T d1w8aa_         179 HSEFK  183 (192)
T ss_dssp             TTTCC
T ss_pred             HhhCc
Confidence            88776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=6.9e-17  Score=124.85  Aligned_cols=163  Identities=21%  Similarity=0.272  Sum_probs=121.6

Q ss_pred             CCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCC-CcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCC
Q 041406          106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEI-PSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE  184 (286)
Q Consensus       106 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~  184 (286)
                      .+.++.+++.++. +|..+.  +++++|++++|++++.. +..|..+++|+.|++++|.+....     +..+..+++|+
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-----~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-----PNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-----TTTTTTCTTCC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-----ccccccccccc
Confidence            4578888888886 565442  67899999999997544 456788899999999999887543     56788888999


Q ss_pred             EEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406          185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA  264 (286)
Q Consensus       185 ~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  264 (286)
                      +|++++|++....+..|..+++|++|++++|.++...+..|..+++|++|+|++|.+........ -...++.+.+..+.
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~  160 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGA  160 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGG
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCC
Confidence            99999999987777788889999999999999986667778888999999999988764322111 11234555666777


Q ss_pred             CccccchhccCcc
Q 041406          265 LSGSLPEQLSELP  277 (286)
Q Consensus       265 l~~~~~~~l~~l~  277 (286)
                      +....|..+.+++
T Consensus       161 ~~c~~p~~l~~~~  173 (192)
T d1w8aa_         161 ARCGAPSKVRDVQ  173 (192)
T ss_dssp             CBBCSSTTTTTSB
T ss_pred             eEeCCChhhcCCE
Confidence            7766676655544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-16  Score=127.54  Aligned_cols=209  Identities=16%  Similarity=0.083  Sum_probs=149.2

Q ss_pred             CCccceEecC-----------CCEEEEEcCCCCcccccCccccccccc--cccCCCCCcccc-chhhcCCCCCCEEEccC
Q 041406           48 CYWVGVSCQR-----------GRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQL-SRQVSNLKRLKQLSLGE  113 (286)
Q Consensus        48 c~w~gv~c~~-----------~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~  113 (286)
                      |..+.+.|..           .++++|++++|.++...+.+|.++++|  +++++|.+...+ +..|..+++++++.+..
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            5566666652           168999999999986555678999999  999999987655 45688999999999865


Q ss_pred             -CCCCCCCccccccCCCCCEEecCCCCCCCCCCc-ccCCCCCCCEEEccCCccccccCCCCCCccccCC-CCCCEEEccC
Q 041406          114 -NQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPS-ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL-SLLEIFSSPS  190 (286)
Q Consensus       114 -n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l-~~L~~L~l~~  190 (286)
                       +.+....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....     +..+..+ ..++.+++.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~-----~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-----RNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC-----TTSSTTSBSSCEEEECCS
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc-----ccccccccccceeeeccc
Confidence             567776777899999999999999998733221 2344556666666666664322     2344444 4788999999


Q ss_pred             CcccccCChhccCCCCCCEE-EcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 041406          191 CSITGPLPEELSKLKFLSML-DLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC  262 (286)
Q Consensus       191 n~~~~~~p~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  262 (286)
                      |.++...+..+ ...++..+ ++++|.++...+..|.++++|++|++++|+++...+..+.++++|+.+++.+
T Consensus       163 n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         163 NGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99985444444 44555555 5678888843345688999999999999999844344466666666555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-17  Score=133.75  Aligned_cols=175  Identities=23%  Similarity=0.218  Sum_probs=93.9

Q ss_pred             cccCCCCCccc-cchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCC-CCCC-CCcccCCCCCCCEEEccC
Q 041406           85 SDLSQNPLFGQ-LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNS-FTGE-IPSELGKLKNLKTLDLSG  161 (286)
Q Consensus        85 L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~  161 (286)
                      ++++++.+... +...+..+++|++|+++++.+....+..+..+++|++|++++|. ++.. +......+++|++|++++
T Consensus        51 LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~  130 (284)
T d2astb2          51 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  130 (284)
T ss_dssp             EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             EECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccc
Confidence            56666655433 23344566667777776666655455556666667777766642 3311 111123456666666666


Q ss_pred             Cc-cccccCCCCCCccccC-CCCCCEEEccCCc--cccc-CChhccCCCCCCEEEcccC-CCCcccchhhhCCCCCCEEE
Q 041406          162 NE-FNGTVRDKLLPPEIGE-LSLLEIFSSPSCS--ITGP-LPEELSKLKFLSMLDLSEN-PLKCSVPKAIGELRKLGILN  235 (286)
Q Consensus       162 n~-~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~--~~~~-~p~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  235 (286)
                      |. ++...    +...+.. .+.|+.|+++++.  ++.. +......+++|++|++++| .+++..+..+.++++|++|+
T Consensus       131 c~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         131 CFDFTEKH----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             CTTCCHHH----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             cccccccc----chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            43 22110    1122222 3466666666542  2221 2222344566777777664 35555555666666677777


Q ss_pred             cccc-cccccCCccCCCCCCCCEEEcccC
Q 041406          236 LGST-QLNGSIPAELGKCENLMSVMLSCN  263 (286)
Q Consensus       236 L~~n-~l~~~~~~~~~~~~~L~~L~l~~n  263 (286)
                      +++| .+++.....+..+++|++|+++++
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7664 455544445566666777776666

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=3.8e-14  Score=118.79  Aligned_cols=74  Identities=30%  Similarity=0.311  Sum_probs=40.5

Q ss_pred             CEEEEEcCCCCcccccCccccccccccccCCCCCccccchhhcCC-CCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNL-KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS  137 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  137 (286)
                      +++.|++++|+++ .+|..+.+++. |++++|.++. ++    .+ +.|++|++++|.+.. +|. +..+++|++|++++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~~~~L~~-L~l~~n~l~~-l~----~lp~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~  129 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPELPQSLKS-LLVDNNNLKA-LS----DLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDN  129 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCCCTTCCE-EECCSSCCSC-CC----SCCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCS
T ss_pred             CCCEEECCCCCCc-ccccchhhhhh-hhhhhcccch-hh----hhcccccccccccccccc-ccc-hhhhccceeecccc
Confidence            5666666666665 44544333222 4455555432 11    22 346777777776665 342 45667777777776


Q ss_pred             CCCC
Q 041406          138 NSFT  141 (286)
Q Consensus       138 n~l~  141 (286)
                      +.+.
T Consensus       130 ~~~~  133 (353)
T d1jl5a_         130 NSLK  133 (353)
T ss_dssp             SCCS
T ss_pred             cccc
Confidence            6554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-15  Score=112.97  Aligned_cols=62  Identities=21%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccc
Q 041406          101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN  165 (286)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  165 (286)
                      .+..++++|++++|.|+. ++..+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc
Confidence            344555666666665554 2333445555555555555555 222 2444455555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=1.9e-16  Score=133.37  Aligned_cols=227  Identities=20%  Similarity=0.203  Sum_probs=149.0

Q ss_pred             CEEEEEcCCCCcccc----cCccccccccc--cccCCCCCcc---c-------cchhhcCCCCCCEEEccCCCCCCCCc-
Q 041406           59 RVIWLVLPTHSLKGP----LSPSLFFLSSL--SDLSQNPLFG---Q-------LSRQVSNLKRLKQLSLGENQLSDFVP-  121 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~----~~~~~~~l~~l--L~l~~n~~~~---~-------~~~~l~~l~~L~~L~l~~n~l~~~~~-  121 (286)
                      .++.|+|++|.+...    +...+...+.+  ++++++....   .       +...+..+++|+.|++++|.+..... 
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            588899999887643    33345555666  6666654321   1       23445677889999999998876432 


Q ss_pred             ---cccccCCCCCEEecCCCCCCCCCC----cc---------cCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406          122 ---SQLGVLTQLETLSLGSNSFTGEIP----SE---------LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI  185 (286)
Q Consensus       122 ---~~~~~l~~L~~L~l~~n~l~~~~~----~~---------l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~  185 (286)
                         ..+...++|++|++++|.+.....    ..         ....+.|+.+++++|.+..... ..+...+...+.+++
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~-~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM-KEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-HHHHHHHHHCTTCCE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc-ccccchhhhhhhhcc
Confidence               334567889999999887752111    01         1346678888888887753210 123344566788899


Q ss_pred             EEccCCccccc-----CChhccCCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEcccccccccCCc----cCC--
Q 041406          186 FSSPSCSITGP-----LPEELSKLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGSIPA----ELG--  250 (286)
Q Consensus       186 L~l~~n~~~~~-----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~--  250 (286)
                      |++++|.+...     +...+...++|+.|++++|.++..    +...+..+++|++|++++|.+++....    .+.  
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            99988887632     234466778888999988887643    334566788899999988888753222    222  


Q ss_pred             CCCCCCEEEcccCcCccc----cchhcc-Ccc-cceEEccCC
Q 041406          251 KCENLMSVMLSCNALSGS----LPEQLS-ELP-VLIFAAEKN  286 (286)
Q Consensus       251 ~~~~L~~L~l~~n~l~~~----~~~~l~-~l~-L~~l~l~~N  286 (286)
                      ..+.|++|++++|.++..    +...+. +.+ |++|++++|
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            346788899999888743    333343 566 888888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7e-17  Score=140.42  Aligned_cols=107  Identities=24%  Similarity=0.249  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCCccccc-Cccccccccc--cccCCCCCccc----cchhhcCCCCCCEEEccCCCCCCCCccccc-----c
Q 041406           59 RVIWLVLPTHSLKGPL-SPSLFFLSSL--SDLSQNPLFGQ----LSRQVSNLKRLKQLSLGENQLSDFVPSQLG-----V  126 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~-~~~~~~l~~l--L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~  126 (286)
                      +++.||++++++++.. ..-+..++++  ++|++|.++..    ++..+..+++|+.|++++|.++......+.     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5778888888877532 2334455666  77777777642    345566777888888887776532111221     2


Q ss_pred             CCCCCEEecCCCCCCCC----CCcccCCCCCCCEEEccCCccc
Q 041406          127 LTQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLSGNEFN  165 (286)
Q Consensus       127 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  165 (286)
                      .++|++|++++|.++..    ++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            24688888888877632    3345666777888888777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.4e-14  Score=103.39  Aligned_cols=101  Identities=23%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             CEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEE
Q 041406          107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF  186 (286)
Q Consensus       107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L  186 (286)
                      |+|++++|.++. ++ .+..+++|++|++++|.++ .+|+.+..+++|+.|++++|.++.      + +.+..+++|+++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~------l-~~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN------V-DGVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC------C-GGGTTCSSCCEE
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc------c-CccccccccCeE
Confidence            345555555553 22 2455555555555555555 444445555555555555555532      1 124444444444


Q ss_pred             EccCCcccccC-ChhccCCCCCCEEEcccCCC
Q 041406          187 SSPSCSITGPL-PEELSKLKFLSMLDLSENPL  217 (286)
Q Consensus       187 ~l~~n~~~~~~-p~~~~~~~~L~~L~l~~n~l  217 (286)
                      ++++|.+.... ...+..+++|+.+++++|.+
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            44444444211 12334444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.7e-15  Score=110.98  Aligned_cols=128  Identities=17%  Similarity=0.075  Sum_probs=92.0

Q ss_pred             ccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhcc
Q 041406          123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS  202 (286)
Q Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~  202 (286)
                      .+.+..++++|++++|+|+ .++..+..+++|+.|++++|.+...       +.+..+++|++|++++|.++...+..+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-------~~~~~l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-------CCcccCcchhhhhcccccccCCCccccc
Confidence            3556778888999998888 5666667788888888888888631       2466778888888888888755555556


Q ss_pred             CCCCCCEEEcccCCCCccc-chhhhCCCCCCEEEcccccccccCCc----cCCCCCCCCEEE
Q 041406          203 KLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLGSTQLNGSIPA----ELGKCENLMSVM  259 (286)
Q Consensus       203 ~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~  259 (286)
                      .+++|++|++++|.++... ...+..+++|++|++++|.++ ..|.    .+..+|+|+.||
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            6778888888888876321 135667788888888888776 3342    355677777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.5e-14  Score=103.13  Aligned_cols=102  Identities=27%  Similarity=0.383  Sum_probs=53.7

Q ss_pred             CEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEE
Q 041406          131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML  210 (286)
Q Consensus       131 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L  210 (286)
                      |+|++++|.++ .++ .+..+++|++|++++|.++.      +|..+..+++|++|++++|.++. +| .+..+++|+++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~------lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc------chhhhhhhhcccccccccccccc-cC-ccccccccCeE
Confidence            45666666666 443 25566666666666666542      34455555555555555555552 22 24555555555


Q ss_pred             EcccCCCCccc-chhhhCCCCCCEEEccccccc
Q 041406          211 DLSENPLKCSV-PKAIGELRKLGILNLGSTQLN  242 (286)
Q Consensus       211 ~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  242 (286)
                      ++++|.+++.. ...+..+++|++|++++|.++
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55555554221 123444555555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2e-15  Score=123.69  Aligned_cols=209  Identities=18%  Similarity=0.225  Sum_probs=145.7

Q ss_pred             CEEEEEcCCCCcccc-cCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-CCCC-CccccccCCCCCEE
Q 041406           59 RVIWLVLPTHSLKGP-LSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-LSDF-VPSQLGVLTQLETL  133 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~-~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L  133 (286)
                      +++.++++++.+.+. +..-+..+++|  ++++++.+.+..+..++++++|++|++++|. ++.. .......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            789999999988754 33446677888  8999999888888889999999999999864 4432 12223568999999


Q ss_pred             ecCCCC-CCCC-CCcccC-CCCCCCEEEccCCc--cccccCCCCCCccccCCCCCCEEEccCCc-ccccCChhccCCCCC
Q 041406          134 SLGSNS-FTGE-IPSELG-KLKNLKTLDLSGNE--FNGTVRDKLLPPEIGELSLLEIFSSPSCS-ITGPLPEELSKLKFL  207 (286)
Q Consensus       134 ~l~~n~-l~~~-~~~~l~-~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~L  207 (286)
                      ++++|. ++.. +...+. ..++|+.|+++++.  ++..    .+.....++++|++|++++|. +++.....+.++++|
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~----~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH----HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccc----cccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            999874 3321 112222 24789999998753  3321    123345568899999999864 666667778889999


Q ss_pred             CEEEcccC-CCCcccchhhhCCCCCCEEEccccccccc-CCccCCCCCCCCEEEcccCcCccccchhccC
Q 041406          208 SMLDLSEN-PLKCSVPKAIGELRKLGILNLGSTQLNGS-IPAELGKCENLMSVMLSCNALSGSLPEQLSE  275 (286)
Q Consensus       208 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  275 (286)
                      ++|++++| .+++.....++++++|++|++.++ +++. +......+|+|   .+..+++++..++.++.
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN  268 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCCCCccCc
Confidence            99999985 677666677888999999999887 3322 22212335554   45677887665555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.45  E-value=6.6e-12  Score=104.82  Aligned_cols=92  Identities=26%  Similarity=0.295  Sum_probs=49.3

Q ss_pred             CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406           59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG  136 (286)
Q Consensus        59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  136 (286)
                      ++++|+|++++++ .+|+.+   +++  |++++|+++ .+|+.   ..+|+.|++++|.++. ++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~~---~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSCC---TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCCC---CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccc
Confidence            4566666666665 345432   233  566666664 34432   3456666666666554 2211   1346666666


Q ss_pred             CCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406          137 SNSFTGEIPSELGKLKNLKTLDLSGNEF  164 (286)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~  164 (286)
                      +|.+. .+|. +..+++|+.++++++.+
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             ccccc-cccc-hhhhccceeeccccccc
Confidence            66665 4443 35556666666655544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=2.8e-14  Score=119.92  Aligned_cols=212  Identities=17%  Similarity=0.172  Sum_probs=150.7

Q ss_pred             cCccccccccc--cccCCCCCccc----cchhhcCCCCCCEEEccCCCCCCCC---c-------cccccCCCCCEEecCC
Q 041406           74 LSPSLFFLSSL--SDLSQNPLFGQ----LSRQVSNLKRLKQLSLGENQLSDFV---P-------SQLGVLTQLETLSLGS  137 (286)
Q Consensus        74 ~~~~~~~l~~l--L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~---~-------~~~~~l~~L~~L~l~~  137 (286)
                      +...+.+...+  +++++|.+...    +...+...++|+.++++++......   +       ..+...++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            33456666777  89999988654    3445667899999999987654321   1       2344678999999999


Q ss_pred             CCCCCC----CCcccCCCCCCCEEEccCCccccccCCCCCCc---------cccCCCCCCEEEccCCccccc----CChh
Q 041406          138 NSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP---------EIGELSLLEIFSSPSCSITGP----LPEE  200 (286)
Q Consensus       138 n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~---------~~~~l~~L~~L~l~~n~~~~~----~p~~  200 (286)
                      |.+...    +...+...++|++|++++|.+..... ..+..         .....+.|+.+.+++|.+...    +...
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheeccccccccccc-ccccccccccccccccccCcccceeecccccccccccccccch
Confidence            998753    23345567899999999998742110 00011         123567899999999988633    3344


Q ss_pred             ccCCCCCCEEEcccCCCCcc-----cchhhhCCCCCCEEEccccccccc----CCccCCCCCCCCEEEcccCcCccccc-
Q 041406          201 LSKLKFLSMLDLSENPLKCS-----VPKAIGELRKLGILNLGSTQLNGS----IPAELGKCENLMSVMLSCNALSGSLP-  270 (286)
Q Consensus       201 ~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-  270 (286)
                      +...+.|+.|++++|.++..     +...+...++|+.|++++|.++..    +...+..+++|++|++++|.+++.-. 
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            56778999999999998743     233466789999999999998743    34456788999999999999986433 


Q ss_pred             ---hhccC--cc-cceEEccCC
Q 041406          271 ---EQLSE--LP-VLIFAAEKN  286 (286)
Q Consensus       271 ---~~l~~--l~-L~~l~l~~N  286 (286)
                         +.+..  .+ |++|++++|
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHHhhhccCCCCCEEECCCC
Confidence               33433  34 999999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=7.1e-15  Score=113.73  Aligned_cols=129  Identities=23%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             ccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChh
Q 041406          121 PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEE  200 (286)
Q Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~  200 (286)
                      +..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+..      +|.....+++|++|++++|.++. + +.
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~------i~~~~~~~~~L~~L~l~~N~i~~-l-~~  110 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK------IENLDAVADTLEELWISYNQIAS-L-SG  110 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS------CSSHHHHHHHCCEEECSEEECCC-H-HH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc------ccccccccccccccccccccccc-c-cc
Confidence            344555556666666665555 332 35555566666666665532      22333334456666666666653 2 23


Q ss_pred             ccCCCCCCEEEcccCCCCccc-chhhhCCCCCCEEEcccccccccCCcc----------CCCCCCCCEEE
Q 041406          201 LSKLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLGSTQLNGSIPAE----------LGKCENLMSVM  259 (286)
Q Consensus       201 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~~L~~L~  259 (286)
                      +..+++|+.|++++|.++... ...++.+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            455566677777776665321 134566677777777777665433221          33466677665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=3.9e-15  Score=115.20  Aligned_cols=143  Identities=21%  Similarity=0.266  Sum_probs=109.6

Q ss_pred             CCEEecCCC--CCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC
Q 041406          130 LETLSLGSN--SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL  207 (286)
Q Consensus       130 L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L  207 (286)
                      ++.+++.+.  .+. .++..+..+++|++|++++|.+..      + +.+..+++|++|++++|.++ .+|.....+++|
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~------i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L   95 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK------I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC------C-CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHC
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC------c-ccccCCccccChhhcccccc-cccccccccccc
Confidence            344455443  233 556678889999999999999863      2 35888999999999999998 556555556689


Q ss_pred             CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCccccch----------hccCc
Q 041406          208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP-AELGKCENLMSVMLSCNALSGSLPE----------QLSEL  276 (286)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~l~~l  276 (286)
                      ++|++++|.++. + ..+..+++|++|++++|.++.... ..+..+++|++|++++|++....+.          .+..+
T Consensus        96 ~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_          96 EELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             CEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHC
T ss_pred             cccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHC
Confidence            999999999984 4 457888999999999999984321 4578899999999999998754332          25678


Q ss_pred             c-cceEEc
Q 041406          277 P-VLIFAA  283 (286)
Q Consensus       277 ~-L~~l~l  283 (286)
                      | |+.||-
T Consensus       174 p~L~~LD~  181 (198)
T d1m9la_         174 PNLKKLDG  181 (198)
T ss_dssp             SSCCEESS
T ss_pred             CCcCEeCC
Confidence            8 888863

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-11  Score=91.37  Aligned_cols=105  Identities=18%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             CEEEccCCCCCCCCccccccCCCCCEEecCCCC-CCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406          107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNS-FTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI  185 (286)
Q Consensus       107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~  185 (286)
                      +.++.+++.+.. .|..+..+++|++|++++++ ++...+..|..+++|+.|++++|+++...     +.+|..+++|++
T Consensus        11 ~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-----~~~f~~l~~L~~   84 (156)
T d2ifga3          11 SGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-----PDAFHFTPRLSR   84 (156)
T ss_dssp             SCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-----TTGGGSCSCCCE
T ss_pred             CeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-----cccccccccccc
Confidence            345555555544 34445555666666665443 55333345556666666666666654322     345566666666


Q ss_pred             EEccCCcccccCChhccCCCCCCEEEcccCCCC
Q 041406          186 FSSPSCSITGPLPEELSKLKFLSMLDLSENPLK  218 (286)
Q Consensus       186 L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~  218 (286)
                      |++++|+++ .+|.......+|++|++++|.+.
T Consensus        85 L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            666666666 33333223335677777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.7e-12  Score=91.96  Aligned_cols=109  Identities=18%  Similarity=0.104  Sum_probs=89.5

Q ss_pred             CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCc-ccccCChhccCCCCCCEEEcccCCCCcccchhhhCCC
Q 041406          151 LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS-ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELR  229 (286)
Q Consensus       151 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  229 (286)
                      ......++++++.+..      .|..+..+++|++|++.+|+ ++...+..|..+++|+.|++++|.++...+..|..++
T Consensus         7 c~~~~~l~c~~~~~~~------~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           7 PHGSSGLRCTRDGALD------SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             CSSSSCEECCSSCCCT------TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             cCCCCeEEecCCCCcc------CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc
Confidence            3445667888777643      46778889999999998764 7766667899999999999999999976678899999


Q ss_pred             CCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406          230 KLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS  266 (286)
Q Consensus       230 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  266 (286)
                      +|++|+|++|+++ .+|........|++|++++|++.
T Consensus        81 ~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999999999 55555445567999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.4e-13  Score=114.17  Aligned_cols=39  Identities=28%  Similarity=0.284  Sum_probs=19.1

Q ss_pred             CCCCCEEecCCCCCCC-----CCCcccCCCCCCCEEEccCCccc
Q 041406          127 LTQLETLSLGSNSFTG-----EIPSELGKLKNLKTLDLSGNEFN  165 (286)
Q Consensus       127 l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~~  165 (286)
                      .+.++.+++++|.+..     ...........++.+++++|.+.
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~  268 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT  268 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             cccccccchhhccccccccchhhccccccccccccccccccccc
Confidence            3456666666665431     11122233455666666655543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.7e-09  Score=78.95  Aligned_cols=84  Identities=18%  Similarity=0.093  Sum_probs=51.4

Q ss_pred             cccCCCCCCEEEccCCccccc--CChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCc------
Q 041406          176 EIGELSLLEIFSSPSCSITGP--LPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA------  247 (286)
Q Consensus       176 ~~~~l~~L~~L~l~~n~~~~~--~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------  247 (286)
                      ....++.|++|++++|+++..  ++..+..+++|+.|++++|.++...+-......+|+.|++++|.++.....      
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            334577788888888877643  234455677777777877777633222233445677777777777643331      


Q ss_pred             -cCCCCCCCCEEE
Q 041406          248 -ELGKCENLMSVM  259 (286)
Q Consensus       248 -~~~~~~~L~~L~  259 (286)
                       .+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence             234567777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.9e-09  Score=76.12  Aligned_cols=84  Identities=19%  Similarity=0.114  Sum_probs=45.7

Q ss_pred             CCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc------
Q 041406          149 GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP------  222 (286)
Q Consensus       149 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~------  222 (286)
                      ..+++|++|++++|+++...   .++..+..+++|+.|++++|.++...+-.......|+.+++++|.++....      
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~---~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLD---DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCS---GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCc---hhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            34666777777777665321   123445556677777777776663222122233456667777776653322      


Q ss_pred             -hhhhCCCCCCEEE
Q 041406          223 -KAIGELRKLGILN  235 (286)
Q Consensus       223 -~~~~~l~~L~~L~  235 (286)
                       ..+..+|+|+.|+
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             1234566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.23  E-value=7.2e-07  Score=65.86  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             CCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCccc--
Q 041406          149 GKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCSV--  221 (286)
Q Consensus       149 ~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~~--  221 (286)
                      .+.++|++|+++++ .+.... ...+...+...+.|++|++++|.+...    +.+.+...+.|++|++++|.+++..  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~-~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKER-IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHH-HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHH-HHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            34577888888764 353211 012334566667788888888877632    2234555677888888888877432  


Q ss_pred             --chhhhCCCCCCEEEcccccccc-------cCCccCCCCCCCCEEEcccCc
Q 041406          222 --PKAIGELRKLGILNLGSTQLNG-------SIPAELGKCENLMSVMLSCNA  264 (286)
Q Consensus       222 --~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~~~~L~~L~l~~n~  264 (286)
                        ...+...++|++|++++|.+..       .+...+...++|++|+++.+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence              2345566778888887775442       123334456777788776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.14  E-value=2.4e-07  Score=68.54  Aligned_cols=115  Identities=13%  Similarity=0.091  Sum_probs=74.6

Q ss_pred             cCCCCCEEecCCC-CCCCC----CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc----
Q 041406          126 VLTQLETLSLGSN-SFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----  196 (286)
Q Consensus       126 ~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----  196 (286)
                      +.++|++|+++++ .+...    +...+...++|++|++++|.+..... ..+...+...+.|++|++++|.+...    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~-~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA-RGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH-TTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHH-HHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4577888888864 35421    22345667788888888888753221 23445566677888888888887743    


Q ss_pred             CChhccCCCCCCEEEcccCCCCcc-------cchhhhCCCCCCEEEcccccc
Q 041406          197 LPEELSKLKFLSMLDLSENPLKCS-------VPKAIGELRKLGILNLGSTQL  241 (286)
Q Consensus       197 ~p~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l  241 (286)
                      +...+...++|++|++++|.+...       +...+...++|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            234566777888888887765421       334455667888888766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.70  E-value=8.5e-06  Score=59.75  Aligned_cols=116  Identities=19%  Similarity=0.153  Sum_probs=70.2

Q ss_pred             CCCCCCCEEEccC-CccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCccc--
Q 041406          149 GKLKNLKTLDLSG-NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCSV--  221 (286)
Q Consensus       149 ~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~~--  221 (286)
                      .+.++|++|++++ +.++... ...+...+...+.|++|++++|.+...    +...+...+.++.+++++|.++...  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~-~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHH-HHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            4567888888886 3453211 112345556677888888888877633    2234555677888888888776432  


Q ss_pred             --chhhhCCCCCCEEEcc--cccccc----cCCccCCCCCCCCEEEcccCcC
Q 041406          222 --PKAIGELRKLGILNLG--STQLNG----SIPAELGKCENLMSVMLSCNAL  265 (286)
Q Consensus       222 --~~~~~~l~~L~~L~L~--~n~l~~----~~~~~~~~~~~L~~L~l~~n~l  265 (286)
                        ...+...++|+.++|.  .|.+..    .+...+...++|++|+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              2445566777765553  455543    2333445567788888776643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.54  E-value=5.6e-06  Score=60.77  Aligned_cols=116  Identities=20%  Similarity=0.174  Sum_probs=72.2

Q ss_pred             ccCCCCCEEecCC-CCCCC----CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc---
Q 041406          125 GVLTQLETLSLGS-NSFTG----EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP---  196 (286)
Q Consensus       125 ~~l~~L~~L~l~~-n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---  196 (286)
                      .+.++|++|++++ +.++.    .+...+...++|++|++++|.++.... ..+...+...+.++.+++++|.+...   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~-~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA-FALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH-HHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHH-HHHHHHHhhcccchhhhhccccccchhHH
Confidence            4567888888876 34542    122345567788888888887753221 12334555667888888888877532   


Q ss_pred             -CChhccCCCCCCEEEcc--cCCCCcc----cchhhhCCCCCCEEEcccccc
Q 041406          197 -LPEELSKLKFLSMLDLS--ENPLKCS----VPKAIGELRKLGILNLGSTQL  241 (286)
Q Consensus       197 -~p~~~~~~~~L~~L~l~--~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  241 (286)
                       +...+...++|+.+++.  .|.+...    +...+...++|+.|+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             23455667778775554  5556532    344555678888888876643