Citrus Sinensis ID: 041407

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEGLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFDCKTQTSYYTCFI
cHHHHHccccccccccccccccccEEEcccEEEEccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccEEEc
HHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccccHHHHcccccEHHHHEEcccccccccccccccccHHHcccHHHHHHHHHHcccccccccccccccccccccccccEEEEcc
ilegllklpenrecadcgskaprwasvNLGIFICMQCSGIHRSLGVHISKVrsttldtwLPEQVAFMQSMgneksnkfweaelppnfdrsRIEKFIRTKYEerkwvqkgatqpttkavQINNNVSKFLEGLkrgiprktrtLSLEEEILTKHiaqiappptvgrsrggsldmnekaaapipprvppsvaevqvptnnkngttdLYTLLYVNNVqqeytiappsrwatfdcktqtsyytcfi
ilegllklpenrecadcgskaprWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWEaelppnfdrsrIEKFIRTKyeerkwvqkgatqpttkavqinnnvskfleglkrgiprktRTLSLEEEILtkhiaqiappptvgRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYtiappsrwatfdcKTQTSYYTCFI
ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEGLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFDCKTQTSYYTCFI
*************CADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQ********KFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEGLKRGIPR**RTLSLEEEILTKHIA*********************************************GTTDLYTLLYVNNVQQEYTIAPPSRWATFDCKTQTSYYTCF*
ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWV****************************************************************************************************************************KTQTSYYTCFI
ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEGLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFDCKTQTSYYTCFI
ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKG********************************************AQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFDCKTQTSYYTCFI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEGLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFDCKTQTSYYTCFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
Q0WQQ1232 Probable ADP-ribosylation yes no 0.883 0.918 0.567 2e-67
Q9FL69 483 Probable ADP-ribosylation no no 0.452 0.225 0.825 2e-53
Q5F413 428 Stromal membrane-associat yes no 0.448 0.252 0.535 8e-32
Q7TN29 428 Stromal membrane-associat yes no 0.448 0.252 0.535 5e-31
Q8WU79 429 Stromal membrane-associat yes no 0.448 0.251 0.535 5e-31
Q5EA00 429 Stromal membrane-associat yes no 0.448 0.251 0.535 6e-31
Q9UT34320 Uncharacterized protein C yes no 0.439 0.331 0.532 2e-29
Q91VZ6 440 Stromal membrane-associat no no 0.402 0.220 0.554 3e-28
Q5FVC7 770 Arf-GAP with coiled-coil, no no 0.431 0.135 0.531 1e-27
Q8IYB5 467 Stromal membrane-associat no no 0.402 0.207 0.544 2e-27
>sp|Q0WQQ1|AGD15_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1 Back     alignment and function desciption
 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/231 (56%), Positives = 160/231 (69%), Gaps = 18/231 (7%)

Query: 1   ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
           ILE LLK P+NRECADC SKAPRWASVNLGIFICMQCSGIHRSLGVHIS+VRS TLDTWL
Sbjct: 18  ILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWL 77

Query: 61  PEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQI 120
           P+QVAFM+S GN K N++WE+ELP +F+RS  + FIR KY E++WV  GA QP     Q+
Sbjct: 78  PDQVAFMKSTGNAKGNEYWESELPQHFERSSSDTFIRAKYSEKRWVSPGAIQPAPIVSQL 137

Query: 121 NNNVSKFLE-GLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKA-AA 178
           +  VS  +E G K   P+K RTLSL+EEIL  H+ Q+ PP T  R+R GS+DM E     
Sbjct: 138 SCKVSHLVESGYKPETPKKARTLSLDEEILLHHVLQVTPPET--RTRAGSVDMKENVYVV 195

Query: 179 PIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFD 229
           P+P    P+         N+N ++++       N  +  TIAPPS WATFD
Sbjct: 196 PLPEFKKPN-------QKNENFSSEV-------NQNRRTTIAPPSSWATFD 232
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1 Back     alignment and function description
>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1 Back     alignment and function description
>sp|Q5FVC7|ACAP2_RAT Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Acap2 PE=2 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
225457479332 PREDICTED: probable ADP-ribosylation fac 0.950 0.689 0.644 1e-77
449503131252 PREDICTED: probable ADP-ribosylation fac 0.929 0.888 0.621 2e-76
449439721252 PREDICTED: probable ADP-ribosylation fac 0.929 0.888 0.617 4e-76
356527915301 PREDICTED: probable ADP-ribosylation fac 0.946 0.757 0.600 3e-72
356529424285 PREDICTED: probable ADP-ribosylation fac 0.933 0.789 0.594 1e-70
356561833307 PREDICTED: probable ADP-ribosylation fac 0.933 0.732 0.571 8e-69
296088000223 unnamed protein product [Vitis vinifera] 0.680 0.735 0.772 8e-68
297830388253 ARF-GAP domain 15 [Arabidopsis lyrata su 0.946 0.901 0.539 1e-66
145338639232 putative ADP-ribosylation factor GTPase- 0.883 0.918 0.567 1e-65
357500023312 ADP-ribosylation factor GTPase-activatin 0.941 0.727 0.523 2e-63
>gi|225457479|ref|XP_002267042.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/239 (64%), Positives = 174/239 (72%), Gaps = 10/239 (4%)

Query: 1   ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
           ILEGLLK PENRECADC SKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL
Sbjct: 18  ILEGLLKQPENRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 77

Query: 61  PEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQI 120
           PEQVAFMQSMGNE+SN +WEA LPPN+DRS  E+FIR KY E+KWV K ATQPTTK  + 
Sbjct: 78  PEQVAFMQSMGNERSNDYWEANLPPNYDRSENERFIRAKYVEKKWVSKKATQPTTKPSEK 137

Query: 121 NNNVSKFLE-GLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAP 179
           ++N  K +E G + GI  KTR LSLEEEI T HIAQIAPP   GR+R GSLD+N+ +   
Sbjct: 138 SSNFHKSMESGTRSGIRSKTRKLSLEEEIFTNHIAQIAPP--AGRTRWGSLDLNKIS--- 192

Query: 180 IPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIA---PPSRWATFDCKTQTS 235
            PP   P         N  N TTDL+ L YV + +   +IA     S WATF+    +S
Sbjct: 193 -PPEKGPPFTGCNTSLNKGNATTDLFHLPYVQDAKPRRSIASSSYYSSWATFESTCSSS 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449503131|ref|XP_004161849.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439721|ref|XP_004137634.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356527915|ref|XP_003532551.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15-like [Glycine max] Back     alignment and taxonomy information
>gi|356529424|ref|XP_003533292.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15-like [Glycine max] Back     alignment and taxonomy information
>gi|356561833|ref|XP_003549181.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD15-like [Glycine max] Back     alignment and taxonomy information
>gi|296088000|emb|CBI35283.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297830388|ref|XP_002883076.1| ARF-GAP domain 15 [Arabidopsis lyrata subsp. lyrata] gi|297328916|gb|EFH59335.1| ARF-GAP domain 15 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145338639|ref|NP_188393.2| putative ADP-ribosylation factor GTPase-activating protein AGD15 [Arabidopsis thaliana] gi|122242515|sp|Q0WQQ1.1|AGD15_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD15; Short=ARF GAP AGD15; AltName: Full=Protein ARF-GAP DOMAIN 15; Short=AtAGD15 gi|110737199|dbj|BAF00548.1| hypothetical protein [Arabidopsis thaliana] gi|332642465|gb|AEE75986.1| putative ADP-ribosylation factor GTPase-activating protein AGD15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357500023|ref|XP_003620300.1| ADP-ribosylation factor GTPase-activating protein AGD4 [Medicago truncatula] gi|357500029|ref|XP_003620303.1| ADP-ribosylation factor GTPase-activating protein AGD4 [Medicago truncatula] gi|355495315|gb|AES76518.1| ADP-ribosylation factor GTPase-activating protein AGD4 [Medicago truncatula] gi|355495318|gb|AES76521.1| ADP-ribosylation factor GTPase-activating protein AGD4 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
TAIR|locus:2090517232 AGD15 "AT3G17660" [Arabidopsis 0.883 0.918 0.567 8.8e-63
TAIR|locus:2162580 483 AGD5 "AT5G54310" [Arabidopsis 0.742 0.370 0.561 2.6e-51
ASPGD|ASPL0000049357 565 AN1931 [Emericella nidulans (t 0.473 0.201 0.525 1.4e-32
UNIPROTKB|G4N3G8 574 MGG_04954 "Stromal membrane-as 0.892 0.374 0.384 6.4e-32
MGI|MGI:2138261 440 Smap1 "stromal membrane-associ 0.784 0.429 0.398 1.3e-31
WB|WBGene00012359 495 W09D10.1 [Caenorhabditis elega 0.506 0.246 0.5 1.6e-31
UNIPROTKB|A1EAA2 446 SMAP1 "SMAP1 protein" [Canis l 0.726 0.392 0.402 3.3e-31
ZFIN|ZDB-GENE-060920-2 483 smap1 "stromal membrane-associ 0.485 0.242 0.512 1.4e-30
UNIPROTKB|F1MU99 471 SMAP1 "Uncharacterized protein 0.485 0.248 0.528 1.8e-30
UNIPROTKB|A0FI88 473 SMAP1 "Uncharacterized protein 0.456 0.232 0.543 2.3e-30
TAIR|locus:2090517 AGD15 "AT3G17660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 131/231 (56%), Positives = 160/231 (69%)

Query:     1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
             ILE LLK P+NRECADC SKAPRWASVNLGIFICMQCSGIHRSLGVHIS+VRS TLDTWL
Sbjct:    18 ILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWL 77

Query:    61 PEQVAFMQSMGNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQI 120
             P+QVAFM+S GN K N++WE+ELP +F+RS  + FIR KY E++WV  GA QP     Q+
Sbjct:    78 PDQVAFMKSTGNAKGNEYWESELPQHFERSSSDTFIRAKYSEKRWVSPGAIQPAPIVSQL 137

Query:   121 NNNVSKFLE-GLKRGIPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKA-AA 178
             +  VS  +E G K   P+K RTLSL+EEIL  H+ Q+ PP T  R+R GS+DM E     
Sbjct:   138 SCKVSHLVESGYKPETPKKARTLSLDEEILLHHVLQVTPPET--RTRAGSVDMKENVYVV 195

Query:   179 PIPPRVPPSVAEVQVPTNNKNGTTDLYTLLYVNNVQQEYTIAPPSRWATFD 229
             P+P    P+         N+N ++++       N  +  TIAPPS WATFD
Sbjct:   196 PLPEFKKPN-------QKNENFSSEV-------NQNRRTTIAPPSSWATFD 232
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
TAIR|locus:2162580 AGD5 "AT5G54310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4N3G8 MGG_04954 "Stromal membrane-associated protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
MGI|MGI:2138261 Smap1 "stromal membrane-associated protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00012359 W09D10.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|A1EAA2 SMAP1 "SMAP1 protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060920-2 smap1 "stromal membrane-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MU99 SMAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A0FI88 SMAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WQQ1AGD15_ARATHNo assigned EC number0.56700.88380.9181yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 5e-61
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 2e-48
COG5347319 COG5347, COG5347, GTPase-activating protein that r 1e-43
PLN03114 395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 8e-21
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 3e-15
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 3e-15
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  187 bits (476), Expect = 5e-61
 Identities = 66/115 (57%), Positives = 84/115 (73%), Gaps = 6/115 (5%)

Query: 1   ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
           +L  L KLP N+ CADCG+  P WAS+NLGIFIC++CSG+HRSLGVHISKVRS TLD W 
Sbjct: 3   LLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWT 62

Query: 61  PEQVAFMQSMGNEKSNKFWEAELPPNF------DRSRIEKFIRTKYEERKWVQKG 109
           PEQ+ FM++ GN+++N+FWEA LPP        DR + E FIR KY E+ + +  
Sbjct: 63  PEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 100.0
PLN03131 705 hypothetical protein; Provisional 99.98
PLN03114 395 ADP-ribosylation factor GTPase-activating protein 99.95
KOG0704 386 consensus ADP-ribosylation factor GTPase activator 99.95
KOG0706 454 consensus Predicted GTPase-activating protein [Sig 99.95
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.95
KOG0521 785 consensus Putative GTPase activating proteins (GAP 99.9
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.85
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.76
KOG0702 524 consensus Predicted GTPase-activating protein [Sig 99.59
KOG0521785 consensus Putative GTPase activating proteins (GAP 93.03
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 81.29
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-42  Score=308.74  Aligned_cols=109  Identities=61%  Similarity=1.119  Sum_probs=105.1

Q ss_pred             ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407            1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE   80 (241)
Q Consensus         1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE   80 (241)
                      +|++|++.|+|+.|||||+++|+|||+|+|||||+.|+||||.||+|||+||||+||.|++|+|+.|+..||.+||++||
T Consensus        15 ~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~GN~~an~~~e   94 (287)
T KOG0703|consen   15 RLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISMGNAKANSYYE   94 (287)
T ss_pred             HHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHHcchhhhhhcc
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCChHH----HHHHHHHHHhcCccccCC
Q 041407           81 AELPPNFDRSR----IEKFIRTKYEERKWVQKG  109 (241)
Q Consensus        81 a~lP~~~d~~~----re~fIraKYv~K~F~~~~  109 (241)
                      +.+|..++++.    +|+|||+|||+|+|+.++
T Consensus        95 a~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~  127 (287)
T KOG0703|consen   95 AKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPE  127 (287)
T ss_pred             ccCCccccCCChHHHHHHHHHHHHhhhhhccch
Confidence            99999887654    999999999999999875

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 1e-31
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 4e-28
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-24
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-24
3t9k_A 390 Crystal Structure Of Acap1 C-portion Mutant S554d F 2e-24
3fm8_C 392 Crystal Structure Of Full Length Centaurin Alpha-1 2e-20
3feh_A 386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-20
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 1e-19
3lvq_E 497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-19
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 2e-18
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 7e-18
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 8e-18
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-17
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 7e-17
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 4e-16
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-15
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 5e-14
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 7e-14
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 81/112 (72%), Gaps = 4/112 (3%)
Query: 1   ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
           +L  LL   +N+ CADC SK PRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W 
Sbjct: 17  VLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWT 76
Query: 61  PEQVAFMQSMGNEKSNKFWEAELPPNFDRSRI----EKFIRTKYEERKWVQK 108
            EQ+  MQ MGN K+N+ +EA LP  F R +I    E FIR KYE++K++ +
Sbjct: 77  QEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDR 128
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 4e-65
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-64
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 8e-64
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 2e-63
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 9e-62
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 1e-59
2owa_A138 Arfgap-like finger domain containing protein; zinc 1e-59
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 4e-56
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 1e-55
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 2e-54
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-52
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 4e-52
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 5e-47
3o47_A329 ADP-ribosylation factor GTPase-activating protein 7e-36
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
 Score =  197 bits (503), Expect = 4e-65
 Identities = 60/121 (49%), Positives = 81/121 (66%), Gaps = 4/121 (3%)

Query: 1   ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
           IL  LL+  +N+ CADC +K PRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W 
Sbjct: 19  ILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWT 78

Query: 61  PEQVAFMQSMGNEKSNKFWEAELPPNF----DRSRIEKFIRTKYEERKWVQKGATQPTTK 116
            EQ+  MQ MGN K+   +EA LP NF        +E FIR KYE++K+  K A   +  
Sbjct: 79  AEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAISGP 138

Query: 117 A 117
           +
Sbjct: 139 S 139
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.97
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.97
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.97
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.97
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.97
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.95
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 86.54
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 83.58
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.8e-42  Score=281.57  Aligned_cols=109  Identities=53%  Similarity=1.026  Sum_probs=102.7

Q ss_pred             ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407            1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE   80 (241)
Q Consensus         1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE   80 (241)
                      +|++|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+||||+||.|++++|++|+.+||.++|++||
T Consensus        17 ~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e   96 (134)
T 2iqj_A           17 VLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYE   96 (134)
T ss_dssp             HHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCC----hHHHHHHHHHHHhcCccccCC
Q 041407           81 AELPPNFD----RSRIEKFIRTKYEERKWVQKG  109 (241)
Q Consensus        81 a~lP~~~d----~~~re~fIraKYv~K~F~~~~  109 (241)
                      +++|+...    ...+++||++||++|+|+.+.
T Consensus        97 ~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~  129 (134)
T 2iqj_A           97 AYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRS  129 (134)
T ss_dssp             TTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred             hcCCccCCCCCchHHHHHHHHHHHhCCeeeCCc
Confidence            99987543    345999999999999999774
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-48
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  153 bits (387), Expect = 3e-48
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 1   ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
           I+  + ++  N  C DCG+  P W S NLGI  C++CSGIHR LGVH S+++S TLD   
Sbjct: 5   IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLG 64

Query: 61  PEQVAFMQSMGNEKSNKFWEAELP--------PNFDRSRIEKFIRTKYEERKWVQK 108
             ++   +++GN   N+  E  LP        P  D    + +I  KY ER++ +K
Sbjct: 65  TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK 120

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 89.83
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 83.07
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-42  Score=273.78  Aligned_cols=109  Identities=39%  Similarity=0.746  Sum_probs=101.3

Q ss_pred             ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407            1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE   80 (241)
Q Consensus         1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE   80 (241)
                      ||++|++.|||++|||||+++|+|||+|||||||++|||+||.||+|||+|||++||.|++++|++|+.+||..+|++||
T Consensus         5 ~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~~~e   84 (122)
T d1dcqa2           5 IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIME   84 (122)
T ss_dssp             HHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHT
T ss_pred             HHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCC--------CChHHHHHHHHHHHhcCccccCC
Q 041407           81 AELPPN--------FDRSRIEKFIRTKYEERKWVQKG  109 (241)
Q Consensus        81 a~lP~~--------~d~~~re~fIraKYv~K~F~~~~  109 (241)
                      +++|..        .+...|++||++||++|+|+.+.
T Consensus        85 a~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          85 CCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             TTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             hhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            998642        23345999999999999999763
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure