Citrus Sinensis ID: 041425

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITSNPTSS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHEEcccccccccccccccccccEEEEEHEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEcccccEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccEEcccccccccc
Coil and Loop (DISEMBL)
mnchgqwmPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVyfrerknrpklTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALpfglekvnvnglagktkVLGTVVCVGGAVLLTLYkgklisnphlpatnynvtSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARigkrfpcqysstTIISFFGAIQSAILSLIIErnlpgwvlkgklETIGVIYCGMVGSGLCYVGmswcvkkrgpvftsafspLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQmkqgqaaqqdercdaashvipitsnptss
Flexible Loop (DISEMBL)
MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLykgklisnphlpatnynvtsHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAAshvipitsnptss
Low Complexity Region (SEG)
MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITSNPTSS
Disordered region (IsUnstruct)
***HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKS*************************************
Disordered Region (DISOPRED)
*****QW*PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPA********************WIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWG***************************************
Disordered Region (DISEMBL)
MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEEF****************AASHVIPITSNPTSS
Disordered Region (DISPRO)
*NCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL*********************RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKS*************************************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITSNPTSS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q9LI65	364	WAT1-related protein At3g	yes	no	0.969	0.975	0.5	1e-101
Q9M130	365	WAT1-related protein At4g	no	no	0.893	0.895	0.487	2e-94
Q5XEZ0	365	WAT1-related protein At1g	no	no	0.956	0.958	0.400	7e-75
Q9M129	361	WAT1-related protein At4g	no	no	0.890	0.903	0.468	1e-74
Q9M131	365	WAT1-related protein At4g	no	no	0.950	0.953	0.389	5e-73
Q500Z4	352	WAT1-related protein At1g	no	no	0.918	0.954	0.391	2e-71
F4I8W6	337	WAT1-related protein At1g	no	no	0.882	0.958	0.389	1e-68
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.945	0.889	0.376	2e-65
Q8GXB4	374	WAT1-related protein At1g	no	no	0.866	0.847	0.377	3e-63
Q9FL41	402	WAT1-related protein At5g	no	no	0.967	0.880	0.354	1e-61

>sp|Q9LI65|WTR24_ARATH WAT1-related protein At3g30340 OS=Arabidopsis thaliana GN=At3g30340 PE=2 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/360 (50%), Positives = 244/360 (67%), Gaps = 5/360 (1%)

Query: 7   WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK 66
           W  VLMM  +N G + VN   +K+ID GLN +V   YR ++  +FL P   F ER NRPK
Sbjct: 9   WKAVLMMSMINIGLSVVNVMFKKMIDEGLNRMVATTYRLAVGTLFLIPFAIFLERHNRPK 68

Query: 67  LTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVN 126
           LT  ILC LFFSAL+G +L QYF L GLEYTS+TF  AF N VP +TF LAL F  E +N
Sbjct: 69  LTGRILCSLFFSALLGTSLVQYFFLIGLEYTSSTFSLAFSNMVPSVTFALALVFRQETLN 128

Query: 127 VNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWI 186
           +    G+ K+LGT++C+ GA++LTLYKG  +S  H    + ++ +H +   +   T++W 
Sbjct: 129 IKSNVGRAKLLGTMICICGALVLTLYKGTALSREH----STHMETHTRTDSTGAMTQKWA 184

Query: 187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV 246
           +GSI L+     WSSWF++QA+I + +PCQY+STTI+SFFG IQSA+LSLI ER+   WV
Sbjct: 185 MGSIMLVISIIIWSSWFIVQAKISRVYPCQYTSTTILSFFGVIQSALLSLISERSTSMWV 244

Query: 247 LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERI 306
           +K K + + ++Y G+VGSGLCYVGMSWC+++RG VFTS+F PL Q+  AIF FS L E+I
Sbjct: 245 VKDKFQVLALLYSGIVGSGLCYVGMSWCLRQRGAVFTSSFIPLIQVFAAIFSFSFLHEQI 304

Query: 307 YLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITSNPTSS 366
           Y GS +GS+++IVG+YILLWGKSK+ +     KQ       E C  A   +  T++  S+
Sbjct: 305 YCGSVIGSMVIIVGLYILLWGKSKD-KSASVTKQEPLDLDIEGCGTAPKELNSTAHQVSA 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  345 bits (886), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 162/332 (48%), Positives = 233/332 (70%), Gaps = 5/332 (1%)

Query: 3   CHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERK 62
           C G+W PV++MV +N      NA ++K++D G+NH+VI  YR +IS +FLAPI +F ERK
Sbjct: 4   CDGKWTPVIIMVMINSALGLANALVKKVLDGGVNHMVIATYRLAISTLFLAPIAFFWERK 63

Query: 63  NRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGL 122
            RP LT++IL QLFFSAL+G +LTQYF L GL YTSAT  CAF++  P ITF++AL F +
Sbjct: 64  TRPTLTLNILVQLFFSALVGASLTQYFFLLGLSYTSATLACAFISMTPAITFVMALIFRV 123

Query: 123 EKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKT 182
           EK+N+   AG   V+G ++C+GGA+LLT+YKG  ++      T+  + ++  M     K 
Sbjct: 124 EKLNMKSKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAM-----KP 178

Query: 183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL 242
           E WIIG + L AG + + SW L+QA++ +++PCQYSST ++SFFG IQ A+LSLI  R++
Sbjct: 179 ENWIIGCVLLFAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLIKSRDI 238

Query: 243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVL 302
             W+L  KL+ + ++Y G V  G+C VG SWC++KRGP+FTS F+P+  I   +FDF +L
Sbjct: 239 TAWILTDKLDIVTIVYAGAVAQGICTVGTSWCIRKRGPIFTSIFTPVGLIFATLFDFLIL 298

Query: 303 RERIYLGSALGSILVIVGMYILLWGKSKEIEE 334
             +I+LGS +GS +VI G+YI L GK + ++E
Sbjct: 299 HRQIFLGSVVGSGVVIFGLYIFLLGKVRLMKE 330

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XEZ0|WTR1_ARATH WAT1-related protein At1g01070 OS=Arabidopsis thaliana GN=At1g01070 PE=2 SV=1

 Score =  281 bits (718), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 210/362 (58%), Gaps = 12/362 (3%)

Query: 6   QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP 65
           ++ PV++MV  N    +VNA ++K +D G+NH+VI AYR +IS + L P  Y  ERK RP
Sbjct: 13  KYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILVPFAYVLERKTRP 72

Query: 66  KLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKV 125
           ++T  ++   F S L+G +L Q+F L GL YTSAT  CA ++ +P ITF LAL F  E V
Sbjct: 73  QITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTENV 132

Query: 126 NV-NGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTER 184
            +    AG  KV+GT++C+ GA+ LT YKG  ISN H  + ++   SH        K   
Sbjct: 133 KILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSH--SHSHGGASHNNN--DQDKANN 188

Query: 185 WIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPG 244
           W++G ++L  G    S W L Q  +  ++PC+YSST ++S F A Q A+LSL   R++  
Sbjct: 189 WLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSLYKSRDVND 248

Query: 245 WVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRE 304
           W++  +     +IY G+VG  +  V  +W +KK G VF SAF PLT I   +FDF +L  
Sbjct: 249 WIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHT 308

Query: 305 RIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITSNPT 364
            +YLGS +GS++ I G+Y+ LWGK+KE E    +  G   +       A +  P   N +
Sbjct: 309 PLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNE-------AQYTTPNKDNDS 361

Query: 365 SS 366
            S
Sbjct: 362 KS 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M129|WTR30_ARATH WAT1-related protein At4g01450 OS=Arabidopsis thaliana GN=At4g01450 PE=2 SV=1

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/337 (46%), Positives = 223/337 (66%), Gaps = 11/337 (3%)

Query: 4   HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKN 63
            G+W P+++++  N     VNA ++K++D G+NH+VI  YR  IS +FL P+ YF ERK 
Sbjct: 5   DGKWAPMIVLIVSNMIAGMVNALVKKVLDGGINHMVIATYRLGISTLFLLPVAYFWERKT 64

Query: 64  RPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLE 123
           RPKLT+ I CQLF SAL G +L QYF L GL YTSAT   AF   +P +TF++AL FG E
Sbjct: 65  RPKLTLSISCQLFVSALFGASLMQYFYLLGLSYTSATLGSAFWAIMPSLTFVMALIFGFE 124

Query: 124 KVNVNGLAGKTKVLGTVVCVGGAVLLTLYKG-KLISNPHLPATNYNVTSHAKMMISSKKT 182
           K+++    G   VLGT++ + G +LLT+Y+G  L ++P   A + N T H          
Sbjct: 125 KLSLKTKIGYGVVLGTLISLVGGLLLTMYQGIPLTNSPEQAANSNNHTGH---------- 174

Query: 183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL 242
           E WI G  FL+ G   +SSW L+QA+I  ++PC YSST I+S FG +Q A+LSLI  R+L
Sbjct: 175 ENWIKGCFFLLTGVVLFSSWMLIQAKINVKYPCPYSSTVILSVFGTLQCALLSLIKTRHL 234

Query: 243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVL 302
             W+L+ +L  I V+  G+V  G+C VGMSWC+K++GPV +S+FSP+  +   +FDF +L
Sbjct: 235 EDWILRDELTIITVVIAGVVAQGMCTVGMSWCIKQQGPVVSSSFSPVVLMSATVFDFLIL 294

Query: 303 RERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMK 339
              IYLGS +GS++V++G+YI LW +SK+I E   MK
Sbjct: 295 HREIYLGSVIGSVVVVIGLYIFLWSRSKQIVECKIMK 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M131|WTR28_ARATH WAT1-related protein At4g01430 OS=Arabidopsis thaliana GN=At4g01430 PE=2 SV=1

 Score =  275 bits (702), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 213/354 (60%), Gaps = 6/354 (1%)

Query: 6   QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP 65
           QW PV++M+  +    +VNA ++K +D G+NH++  AYR +IS + L P  Y  ERK RP
Sbjct: 6   QWAPVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWERKTRP 65

Query: 66  KLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKV 125
           +LT  +LC+ F S L+G +L Q+F L GL YTSAT   A ++ +P ITF LAL F +E  
Sbjct: 66  QLTFMLLCEHFISGLLGASLMQFFFLLGLSYTSATVSMALVSMLPAITFALALIFRIENA 125

Query: 126 -NVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTER 184
            N+   AG  KV+GT++C+ GA+LLT YKG  +SNPH   ++     +        +T++
Sbjct: 126 QNLKSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPH---SHPQARHNNNNNNGHDQTKK 182

Query: 185 WIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLP 243
           W++G ++L+ G    S W L Q ++  ++P  +YSST ++S F + Q AILSL   R++ 
Sbjct: 183 WLLGCLYLVIGTVLLSLWMLFQGKLSFKYPGNKYSSTCLMSVFASFQCAILSLYKSRDVK 242

Query: 244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLR 303
            W+++ K   +  +Y G+VG  +  V  SW +K  G VF S FSP++ +   +FDF +L 
Sbjct: 243 DWIIEDKFVILVTLYAGIVGQAMSTVVTSWSIKMTGAVFVSTFSPVSLVAATLFDFLILH 302

Query: 304 ERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVI 357
             +YLGS LGS++ I G+Y+ LWG+  E ++    K   ++Q  +  D   H I
Sbjct: 303 SPLYLGSILGSVVTITGLYVFLWGRKNETDQ-SVSKTLNSSQFSQNKDNEDHTI 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q500Z4|WTR3_ARATH WAT1-related protein At1g11450 OS=Arabidopsis thaliana GN=At1g11450 PE=2 SV=2

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 205/347 (59%), Gaps = 11/347 (3%)

Query: 6   QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP 65
           +W P+++MV       +VNA ++K +D G+NH++I AYR +IS   L PI YF ERK  P
Sbjct: 13  KWPPMIVMVTSQVAMGSVNALVKKALDVGVNHMIIGAYRMAISSFILVPIAYFLERKIIP 72

Query: 66  KLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKV 125
           K+T  ++   F S L+G +L Q+F L GL YTSAT  CA ++ +P ITF  AL    EK+
Sbjct: 73  KITFRLMVDHFISGLLGASLMQFFYLLGLSYTSATVACALVSLMPAITFAFALILRTEKI 132

Query: 126 -NVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH--LPATNYNVTSHAKMMISSKKT 182
            ++   AG  KV+GT++C+ GA+ LT YKG  ISN H  L A  +N + H         T
Sbjct: 133 KDLKTQAGMIKVMGTLICISGALFLTFYKGPHISNSHSHLEALPHNNSDH--------NT 184

Query: 183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL 242
           + W++G ++L+ G    S W L Q  +  ++PC++SST ++S F A Q A+LSL   R+L
Sbjct: 185 KNWLLGCLYLVIGIVLLSLWILFQGTLSIKYPCKFSSTCLMSIFAAFQCALLSLYKSRDL 244

Query: 243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVL 302
             W++        +IY G++G  +  V  +W + + G VF SA  P++ I   +FDF +L
Sbjct: 245 KHWIIDDGFVIGVIIYAGVIGQAMSTVAATWGINRLGAVFASAIMPVSLISATLFDFLIL 304

Query: 303 RERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDER 349
              +YLGS +GS+  I+G+Y+ LWGK+KE E        +   +D+R
Sbjct: 305 HTPLYLGSVIGSVGTIIGLYVFLWGKNKETEADITTLSSRMNNEDQR 351

Arabidopsis thaliana (taxid: 3702)

>sp|F4I8W6|WTR4_ARATH WAT1-related protein At1g11460 OS=Arabidopsis thaliana GN=At1g11460 PE=3 SV=1

 Score =  260 bits (664), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 201/339 (59%), Gaps = 16/339 (4%)

Query: 1   MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE 60
           +    +W P+++MV       +VNA ++K +D G+NH++I AYR +IS   LAPI Y  E
Sbjct: 8   VKVESKWPPIIVMVISQVAMGSVNALVKKALDVGVNHMIIGAYRIAISSFILAPIAYILE 67

Query: 61  RKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF 120
           R+  P++T  ++   F S L+G +L Q+F L GL YTSAT  CA ++ +P ITF  AL  
Sbjct: 68  REIIPEITFRLMVDHFISGLLGASLMQFFYLLGLSYTSATVACALVSLMPAITFAFALIL 127

Query: 121 GLEKV-NVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH-----LPATNYNVTSHAK 174
             EK+ ++   AG  KV+GT++C+ GA+ LT YKG  ISN H     LP  N        
Sbjct: 128 RTEKIKSLRTQAGMIKVMGTIICISGALFLTFYKGPHISNSHSHQEALPHNNN------- 180

Query: 175 MMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAIL 234
              S   T+ W++G ++L  G    S W L Q  +  ++PC++SST ++S F A Q A+L
Sbjct: 181 ---SDHNTKNWLLGCLYLTIGTVLISLWILFQGTLSIKYPCKFSSTCLMSIFAAFQCALL 237

Query: 235 SLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVV 294
           SL   R++  W++  +     ++Y G++G  +  V ++W VKK G VF SA  P+  I  
Sbjct: 238 SLYKSRDVKDWIIDDRFVIGVIVYAGVIGQAMSTVSVTWGVKKLGAVFVSAIMPIALISA 297

Query: 295 AIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIE 333
           ++FDF +L   +YLGS +GS+  I G+Y+ LWGK+K++E
Sbjct: 298 SLFDFIILHTPLYLGSLIGSVGTITGLYVFLWGKNKDME 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  249 bits (636), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 199/353 (56%), Gaps = 7/353 (1%)

Query: 11  LMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIH 70
           + M+ + FG+A  +   R  ++ G++ LV   YR  I+++ L P  YF E+K RP +T++
Sbjct: 22  IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPAITLN 81

Query: 71  ILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGL 130
            L Q FF ALIG+T  Q F L GL+ TS TF  +  N+VP ITFL+A    +EKV +N  
Sbjct: 82  FLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINRR 141

Query: 131 AGKTKVLGTVVCVGGAVLLTLYKGKLISNP--HLPATNYNVTSHAKMMISSKKTERWIIG 188
            G +K+LGT +CV GA ++TLYKG  I  P  HL A      S     + +   + W +G
Sbjct: 142 DGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTLG 201

Query: 189 SIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLK 248
            I+LI  C +WS W + QA + K +P + S T+   FFG IQ  I++   ER+   WV  
Sbjct: 202 CIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVFH 261

Query: 249 GKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYL 308
              E   ++Y G+V SG+ +    WC+ + GPVF + + P+  +VVAI     L E  YL
Sbjct: 262 SGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYL 321

Query: 309 GSALGSILVIVGMYILLWGKSKEIEEFDQMK----QGQAAQQDERCDAASHVI 357
           G  +G++L+I G+Y +L+GKS+E  +F  ++    Q  A    ER   + + I
Sbjct: 322 GGIIGAVLIIAGLYFVLYGKSEE-RKFAALEKAAIQSSAEHGIERAPVSRNSI 373

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/326 (37%), Positives = 195/326 (59%), Gaps = 9/326 (2%)

Query: 8   MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKL 67
           +P L MV V  G+A +N   +  ++ G+  L++VAYRQ  + +   P+ +F ERK RPK+
Sbjct: 7   LPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKI 66

Query: 68  TIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNV 127
           T+ IL Q+FF ++ G T  Q     GL+ +S T  CA  N +P +TFLLA  F  E V +
Sbjct: 67  TLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGI 126

Query: 128 NGLAGKTKVLGTVVCVGGAVLLTLYKGKLI----SNPHLPATNYNVTSHAKMMISSKKTE 183
              +G+ KV+GT+VCV GA++L+ Y G  I    S  H  A   N+T H     SS    
Sbjct: 127 KKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHW-AYAENITKHG----SSSGHS 181

Query: 184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP 243
            + +G   ++A   +W++WF++Q ++ + F   Y+ST ++   G+IQ   ++LI +  + 
Sbjct: 182 NFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTIS 241

Query: 244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLR 303
            W L   L  I  +Y G+V S L +  MSW ++++GP++ S FSPL  +VVAIF +++L 
Sbjct: 242 DWSLSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLE 301

Query: 304 ERIYLGSALGSILVIVGMYILLWGKS 329
           E++Y G+ +GS LV++G+Y +LWGK 
Sbjct: 302 EKLYTGTFMGSALVVIGLYGVLWGKD 327

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 206/361 (57%), Gaps = 7/361 (1%)

Query: 9   PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLT 68
           P   M+++ FG+A +N   +  ++ G++H V+V YR +I+   +AP  +F ERK +PK+T
Sbjct: 18  PYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKIT 77

Query: 69  IHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVN 128
             I  QLF   L+G  + Q F   GL+YTS TF CA  N +P +TF+LA+ F +E +++ 
Sbjct: 78  FSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLK 137

Query: 129 GLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHA--KMMISSKKTERWI 186
            L  + K+ GTVV V GA+L+T+YKG ++        +   +SHA      +S   + ++
Sbjct: 138 KLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFL 197

Query: 187 IGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLPGW 245
            GSI LI     W+S F++QA+I K +   Q S TT+I F G +Q+  ++ ++E N   W
Sbjct: 198 KGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAW 257

Query: 246 VLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRER 305
            +   +  +   Y G+V S + Y      +KKRGPVF +AFSPL  ++VA+    VL E+
Sbjct: 258 RIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEK 317

Query: 306 IYLGSALGSILVIVGMYILLWGKSKE----IEEFDQMKQGQAAQQDERCDAASHVIPITS 361
           I+LG  +G++L+++G+Y +LWGK KE    I E  ++       +D   + +   I    
Sbjct: 318 IFLGGVIGAVLIVIGLYAVLWGKQKENQVTICELAKIDSNSKVTEDVEANGSKMKISEGD 377

Query: 362 N 362
           N
Sbjct: 378 N 378

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
359473602	362	PREDICTED: auxin-induced protein 5NG4-li	0.980	0.991	0.608	1e-125
224068242	364	predicted protein [Populus trichocarpa]	0.986	0.991	0.595	1e-123
225425442	350	PREDICTED: auxin-induced protein 5NG4-li	0.948	0.991	0.620	1e-123
297738438	573	unnamed protein product [Vitis vinifera]	0.969	0.619	0.606	1e-122
255548133	402	Auxin-induced protein 5NG4, putative [Ri	0.989	0.900	0.580	1e-120
356530252	502	PREDICTED: auxin-induced protein 5NG4-li	0.978	0.713	0.568	1e-118
224130726	359	predicted protein [Populus trichocarpa]	0.975	0.994	0.583	1e-117
225426479	368	PREDICTED: auxin-induced protein 5NG4 [V	0.967	0.961	0.571	1e-115
297742491	748	unnamed protein product [Vitis vinifera]	0.967	0.473	0.571	1e-115
356576955	385	PREDICTED: auxin-induced protein 5NG4-li	0.953	0.906	0.584	1e-113

>gi|359473602|ref|XP_002272440.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/360 (60%), Positives = 268/360 (74%), Gaps = 1/360 (0%)

Query: 1   MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE 60
           MNCH Q   V  MVAVNF  +  N  ++ I+D+G NHLV++ YRQSIS VF++ + +F E
Sbjct: 1   MNCHEQLKTVAAMVAVNFAISVANVLIKMILDQGANHLVVITYRQSISTVFISAVAFFLE 60

Query: 61  RKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF 120
           RK+RPKLT  ILC +F SAL+G TLTQYF L GL+YTSATF CAF+N VP ITF+LAL F
Sbjct: 61  RKSRPKLTFRILCHIFASALLGATLTQYFFLLGLKYTSATFSCAFINLVPAITFILALVF 120

Query: 121 GLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSK 180
            LEKVN+    G+ KVLGT +C+ GA+LL LY+G  ++NP  P      TSHAK  ISS 
Sbjct: 121 KLEKVNLGSKCGRAKVLGTFICICGALLLGLYRGMPLTNPAYPQAEIPGTSHAKTSISSH 180

Query: 181 KTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIER 240
           +T+ W  GS+ L A   TWSSWFL+QA I K++PCQYSST I+SFF A Q+AILS I++R
Sbjct: 181 RTKSWATGSMVLTAASLTWSSWFLLQAGISKKYPCQYSSTAILSFFSATQAAILSSILDR 240

Query: 241 NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFS 300
           +L  W+LKGKLE   VI+ G+VGSGLCY  MSWCV K+GPVFT+AF+P  QI VAIFDFS
Sbjct: 241 DLSSWILKGKLEISSVIFAGIVGSGLCYGLMSWCVNKKGPVFTAAFTPFIQIFVAIFDFS 300

Query: 301 VLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPIT 360
           +L E+I+LGS LGSILVI G+YILLWGKSKE EE   MKQ Q A++D  CD A  V+PIT
Sbjct: 301 ILHEQIHLGSVLGSILVIAGLYILLWGKSKE-EEDCVMKQSQVAEEDPECDMAPQVVPIT 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068242|ref|XP_002302687.1| predicted protein [Populus trichocarpa] gi|222844413|gb|EEE81960.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/366 (59%), Positives = 271/366 (74%), Gaps = 5/366 (1%)

Query: 1   MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE 60
           M+  GQW PV+ MV VNF FA VN   +KI+D G N +VI  YR S S +FLAP+ Y+ E
Sbjct: 1   MSDGGQWKPVVGMVVVNFAFAIVNVLFKKILDEGTNSMVIATYRLSTSAIFLAPVSYYWE 60

Query: 61  RKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF 120
           RK+RP+LT  I C LF  AL GLTLTQY  L+GLEY SATF CAFLNTVPV TF+LAL F
Sbjct: 61  RKSRPRLTASIFCHLFLGALFGLTLTQYLFLKGLEYISATFACAFLNTVPVNTFILALLF 120

Query: 121 GLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSK 180
           G+EK ++   AG+TKVLG ++C+GGAVLL  YKG  ++N H  A   ++ +HA  MIS K
Sbjct: 121 GIEKASMTSKAGRTKVLGALICMGGAVLLIFYKGIPLTNSHSRAATTDILNHADTMISGK 180

Query: 181 KTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIER 240
           K +RW++GSI  +AGC TWS WFL+QA+I K +P QYSST ++SF GA+QSAILSL IER
Sbjct: 181 KRQRWVVGSILSLAGCFTWSLWFLIQAKISKSYPFQYSSTALMSFLGAVQSAILSLSIER 240

Query: 241 NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFS 300
           N   W+L+ KLE I V+Y G++GSGLCYVGMSWCVK+RGPVFTSAF+P TQI  A+ DFS
Sbjct: 241 NFSMWILRTKLEIISVLYAGIIGSGLCYVGMSWCVKRRGPVFTSAFTPFTQIFAAMLDFS 300

Query: 301 VLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPIT 360
           +L E+IYLGS LGS+LVI+G+YILLWGKS E  +  + KQ   A+++E  D  +  IP T
Sbjct: 301 ILHEQIYLGSVLGSVLVILGLYILLWGKSIEAGDCGE-KQAHLAREEEHRDTEAQ-IPAT 358

Query: 361 ---SNP 363
              SNP
Sbjct: 359 ISRSNP 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425442|ref|XP_002272105.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/348 (62%), Positives = 266/348 (76%), Gaps = 1/348 (0%)

Query: 13  MVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHIL 72
           MVAVNFG +  N  ++ I+D+G NHLV++ YRQSIS VF++ I +F ERK+RPKLT  IL
Sbjct: 1   MVAVNFGLSVANVLIKMILDQGANHLVVITYRQSISTVFISTIAFFLERKSRPKLTFRIL 60

Query: 73  CQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAG 132
           C +F SAL+G TLTQYF L GL+YTSA+F CAF+N VP ITF+L+L F LEKVN+ G  G
Sbjct: 61  CHIFASALLGATLTQYFFLLGLKYTSASFSCAFINLVPAITFILSLVFKLEKVNLGGKCG 120

Query: 133 KTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFL 192
           + KVLGT +C+GGA+LL LY+G  ++NP  P      TSHAK  ISS +T+ W  GS+ L
Sbjct: 121 RAKVLGTFICIGGALLLGLYRGMPLTNPAYPQAEIPGTSHAKTSISSHRTKSWATGSMVL 180

Query: 193 IAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLE 252
            A   TWSSWFL+QA I K++PCQYSST I+SFF A Q+AILS I++R+L  W+LKGKLE
Sbjct: 181 TAASLTWSSWFLLQAGISKKYPCQYSSTAIMSFFSATQAAILSSILDRDLSLWILKGKLE 240

Query: 253 TIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSAL 312
              VI+ G+VGSGLCYV MSWCV K+GPVFT+AF+P  QI VAIFDFS+L E+I+LGS L
Sbjct: 241 ISTVIFAGIVGSGLCYVLMSWCVNKKGPVFTAAFTPFIQIFVAIFDFSILHEQIHLGSVL 300

Query: 313 GSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPIT 360
           GSILVI G+YILLWGKSKE EE   MKQ Q A++D  CD A  V+PIT
Sbjct: 301 GSILVIAGLYILLWGKSKE-EEDCVMKQSQVAEEDPECDMAPQVVPIT 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738438|emb|CBI27639.3| unnamed protein product [Vitis vinifera]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/356 (60%), Positives = 264/356 (74%), Gaps = 1/356 (0%)

Query: 1   MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE 60
           MNCH Q   V  MVAVNF  +  N  ++ I+D+G NHLV++ YRQSIS VF++ + +F E
Sbjct: 1   MNCHEQLKTVAAMVAVNFAISVANVLIKMILDQGANHLVVITYRQSISTVFISAVAFFLE 60

Query: 61  RKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF 120
           RK+RPKLT  ILC +F SAL+G TLTQYF L GL+YTSATF CAF+N VP ITF+LAL F
Sbjct: 61  RKSRPKLTFRILCHIFASALLGATLTQYFFLLGLKYTSATFSCAFINLVPAITFILALVF 120

Query: 121 GLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSK 180
            LEKVN+    G+ KVLGT +C+ GA+LL LY+G  ++NP  P      TSHAK  ISS 
Sbjct: 121 KLEKVNLGSKCGRAKVLGTFICICGALLLGLYRGMPLTNPAYPQAEIPGTSHAKTSISSH 180

Query: 181 KTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIER 240
           +T+ W  GS+ L A   TWSSWFL+QA I K++PCQYSST I+SFF A Q+AILS I++R
Sbjct: 181 RTKSWATGSMVLTAASLTWSSWFLLQAGISKKYPCQYSSTAILSFFSATQAAILSSILDR 240

Query: 241 NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFS 300
           +L  W+LKGKLE   VI+ G+VGSGLCY  MSWCV K+GPVFT+AF+P  QI VAIFDFS
Sbjct: 241 DLSSWILKGKLEISSVIFAGIVGSGLCYGLMSWCVNKKGPVFTAAFTPFIQIFVAIFDFS 300

Query: 301 VLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHV 356
           +L E+I+LGS LGSILVI G+YILLWGKSKE EE   MKQ Q A++D  CD A  V
Sbjct: 301 ILHEQIHLGSVLGSILVIAGLYILLWGKSKE-EEDCVMKQSQVAEEDPECDMAPQV 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548133|ref|XP_002515123.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223545603|gb|EEF47107.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/367 (58%), Positives = 269/367 (73%), Gaps = 5/367 (1%)

Query: 1   MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE 60
           M+C  Q   VL M+ VNF FA VN  L+K+ID G NH+ IV YR SI+ +FLAPI  + E
Sbjct: 40  MSCREQSKTVLAMLFVNFSFAAVNILLKKVIDGGTNHMAIVTYRLSIAAIFLAPIACYCE 99

Query: 61  RKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF 120
           RK RP++   ILC LF  AL+G+TLTQY  L GLEYTS TF CAFLN VPV TF+LALPF
Sbjct: 100 RKTRPRIPFKILCYLFLGALVGVTLTQYLFLLGLEYTSTTFSCAFLNMVPVNTFILALPF 159

Query: 121 GLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSK 180
           GLEKVNV   AG+ K+LG  +C+ GA+LLT+YKG  +++PH    + ++ +H   M++ K
Sbjct: 160 GLEKVNVKSKAGRAKLLGATICMTGAILLTVYKGIPLTHPH----SGDLKNHVAAMMTEK 215

Query: 181 KTER-WIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIE 239
           K  R W++GSIFL+AGC  WSSWFL+QA+IGK +PC+YSST I+S F AIQ+A+++LI  
Sbjct: 216 KRHRSWVLGSIFLMAGCVAWSSWFLIQAKIGKTYPCKYSSTAILSSFAAIQAAVVTLIFN 275

Query: 240 RNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDF 299
           RN+  WVLKGKLE I ++Y G+VGSGLCYVGMSWCVK+RGPVFT+AF+P TQI  A+FDF
Sbjct: 276 RNVTVWVLKGKLEIITIVYAGVVGSGLCYVGMSWCVKERGPVFTAAFTPFTQIFAAMFDF 335

Query: 300 SVLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPI 359
           SVL ++IYLGS +GSILVI G+Y LLWGKS E EE    ++    ++D   D  S V   
Sbjct: 336 SVLHDQIYLGSVIGSILVIAGLYTLLWGKSIEAEECAMKQKSVVVKRDGNSDVESQVPAE 395

Query: 360 TSNPTSS 366
             N TSS
Sbjct: 396 NINRTSS 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530252|ref|XP_003533696.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/366 (56%), Positives = 264/366 (72%), Gaps = 8/366 (2%)

Query: 4   HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKN 63
           H  W PVL+M+ VN   A VN FL+K+++ G+++L I+ YRQ+IS +FL PI  F ER+ 
Sbjct: 7   HEVWKPVLVMIIVNLALAFVNIFLKKVLNEGVDYLTILTYRQAISAIFLTPIACFYERQK 66

Query: 64  RPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLE 123
           RP +  HI+C LF SAL+G+TLTQY  L GLEYTSATF CAFLN VPV TF++ALP G+E
Sbjct: 67  RPSMAGHIICLLFLSALVGVTLTQYLYLIGLEYTSATFACAFLNMVPVFTFIMALPLGIE 126

Query: 124 KVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTE 183
           KVN+  L+ K KVLGT VC+GGA++L LYKG     P +     ++     +  S+ K +
Sbjct: 127 KVNMKKLSAKAKVLGTFVCIGGALMLILYKGV----PLINQQPEHIADKGTIRSSASKLK 182

Query: 184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP 243
           +WIIGS+ L AGC  WSSWFL+QA I K++PCQYSST I+SFF +IQSAIL+L+I+R+  
Sbjct: 183 KWIIGSLLLTAGCFLWSSWFLIQASISKKYPCQYSSTAILSFFASIQSAILTLVIDRSNA 242

Query: 244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLR 303
            W+LKGKLE + V+Y G+VGSGLCYV MSWCVK+RGPVFTSAF+PL Q+ VA+ DFS+L 
Sbjct: 243 KWILKGKLEIMTVVYAGLVGSGLCYVAMSWCVKQRGPVFTSAFTPLLQMFVAVLDFSILH 302

Query: 304 ERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCD---AASHVIPIT 360
           E IYLGS  GS+LVI G YILLWGKSKE EE   +K  Q +Q+DE C     AS  +P  
Sbjct: 303 EEIYLGSVAGSVLVISGTYILLWGKSKE-EEQCAVKGTQESQEDEECKNNLEASSNVPSK 361

Query: 361 SNPTSS 366
             P   
Sbjct: 362 LRPNEE 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130726|ref|XP_002320912.1| predicted protein [Populus trichocarpa] gi|222861685|gb|EEE99227.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/365 (58%), Positives = 264/365 (72%), Gaps = 8/365 (2%)

Query: 1   MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE 60
           M+  GQW PV+ M+ ++F FA VN  L+K+ID+G N++VI  YR S S +FLAPI YF E
Sbjct: 1   MSDVGQWKPVVGMLVISFAFAIVNLLLKKMIDQGTNNMVIATYRLSSSAIFLAPIAYFWE 60

Query: 61  RKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF 120
           RK RPKLT  I C LF  A +GLTLTQY  L GLEY S TF CAFLNTVPV TF+LAL F
Sbjct: 61  RKGRPKLTASIFCHLFLGAFVGLTLTQYLFLLGLEYISVTFSCAFLNTVPVNTFILALLF 120

Query: 121 GLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSK 180
            LEK+N++  AG+ KVLGT +C+GGAVLL LYKG  ++NP   AT    T+H  ++IS K
Sbjct: 121 RLEKLNMSSKAGRAKVLGTFICMGGAVLLILYKGIPLTNPRSEAT----TTH-DILISGK 175

Query: 181 KTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIER 240
           K   W+ GSI  +AGC  WS+WFLMQA+I K +PCQYSST I+SFFGAIQSA LS I++R
Sbjct: 176 KKRSWVAGSILSLAGCFMWSAWFLMQAKISKIYPCQYSSTAIMSFFGAIQSAALSSILKR 235

Query: 241 NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFS 300
               W+LK KLE I V+  G++GSGLCYVGMSWC+K+RGPVFTSAF+P  QI  A+FDFS
Sbjct: 236 KFSMWILKSKLEIISVLNAGIIGSGLCYVGMSWCIKQRGPVFTSAFTPFIQIFAAMFDFS 295

Query: 301 VLRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPIT 360
           +L E+IYLGS LGSI+VI+G+YILLWGK  E  +  + KQ Q   ++E  D  + +    
Sbjct: 296 ILHEQIYLGSVLGSIVVILGLYILLWGKRTEAVDCGE-KQAQLTDEEENHDTEAQISATN 354

Query: 361 --SNP 363
             SNP
Sbjct: 355 SKSNP 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426479|ref|XP_002270961.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/355 (57%), Positives = 263/355 (74%), Gaps = 1/355 (0%)

Query: 7   WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK 66
           W PV++M+AV+F FA VN  L+++++  +NHLV++ YRQSIS +FL PI YF ER +RPK
Sbjct: 10  WSPVIVMLAVDFAFAVVNILLKEVLNAEMNHLVLITYRQSISTIFLVPIGYFWERNSRPK 69

Query: 67  LTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVN 126
           LT+ ILC LFFSAL+G +LTQYF L G++YTSATF CAF+N VP ITF+++LPFGLE VN
Sbjct: 70  LTLRILCYLFFSALVGASLTQYFFLLGIQYTSATFACAFINMVPAITFIMSLPFGLEIVN 129

Query: 127 VNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWI 186
           +    G+ K++GT+VC+ GA++LTLYKG  +     P         A  + S KKTERW 
Sbjct: 130 IKTNRGRAKLIGTLVCICGAMILTLYKGMPLVKYSRPEAPSPTMDQAISLSSGKKTERWT 189

Query: 187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV 246
           +GSI L+ G   WSSWFL+Q+ IGK +PCQYSST I+SFFGAIQSA++SL ++RNL  W+
Sbjct: 190 VGSIALMGGTLLWSSWFLIQSNIGKLYPCQYSSTAIMSFFGAIQSAVISLSMDRNLSLWI 249

Query: 247 LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERI 306
           LKGK E + VIY G+VGSGLCYV MSWCVKKRGPVFT+AFSPL QI+  +FD  +L E++
Sbjct: 250 LKGKTEILTVIYAGVVGSGLCYVAMSWCVKKRGPVFTAAFSPLVQIMAVMFDIPILHEQL 309

Query: 307 YLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITS 361
           +LGS LGS  VI G+YILLWGK K+ E    M+  Q A++ +  +A   V  ITS
Sbjct: 310 HLGSVLGSATVIAGLYILLWGKKKDAEN-SSMELVQEAEEVKDQEAQLQVTTITS 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742491|emb|CBI34640.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/355 (57%), Positives = 263/355 (74%), Gaps = 1/355 (0%)

Query: 7   WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK 66
           W PV++M+AV+F FA VN  L+++++  +NHLV++ YRQSIS +FL PI YF ER +RPK
Sbjct: 390 WSPVIVMLAVDFAFAVVNILLKEVLNAEMNHLVLITYRQSISTIFLVPIGYFWERNSRPK 449

Query: 67  LTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVN 126
           LT+ ILC LFFSAL+G +LTQYF L G++YTSATF CAF+N VP ITF+++LPFGLE VN
Sbjct: 450 LTLRILCYLFFSALVGASLTQYFFLLGIQYTSATFACAFINMVPAITFIMSLPFGLEIVN 509

Query: 127 VNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWI 186
           +    G+ K++GT+VC+ GA++LTLYKG  +     P         A  + S KKTERW 
Sbjct: 510 IKTNRGRAKLIGTLVCICGAMILTLYKGMPLVKYSRPEAPSPTMDQAISLSSGKKTERWT 569

Query: 187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV 246
           +GSI L+ G   WSSWFL+Q+ IGK +PCQYSST I+SFFGAIQSA++SL ++RNL  W+
Sbjct: 570 VGSIALMGGTLLWSSWFLIQSNIGKLYPCQYSSTAIMSFFGAIQSAVISLSMDRNLSLWI 629

Query: 247 LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERI 306
           LKGK E + VIY G+VGSGLCYV MSWCVKKRGPVFT+AFSPL QI+  +FD  +L E++
Sbjct: 630 LKGKTEILTVIYAGVVGSGLCYVAMSWCVKKRGPVFTAAFSPLVQIMAVMFDIPILHEQL 689

Query: 307 YLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITS 361
           +LGS LGS  VI G+YILLWGK K+ E    M+  Q A++ +  +A   V  ITS
Sbjct: 690 HLGSVLGSATVIAGLYILLWGKKKDAEN-SSMELVQEAEEVKDQEAQLQVTTITS 743

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576955|ref|XP_003556595.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/363 (58%), Positives = 260/363 (71%), Gaps = 14/363 (3%)

Query: 7   WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK 66
           W P L+M+ VN   A VN FL+K+++ G+++L I+ YRQ+IS +FL PI  F ERK   K
Sbjct: 12  WKPALVMIIVNLALAFVNIFLKKVLNEGVDYLTILTYRQAISAIFLTPIACFYERKR--K 69

Query: 67  LTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVN 126
           L  HI+C LF SAL+G+TLTQ   L GLEYTSATF CAFLN VPV TF++ALP G+EKVN
Sbjct: 70  LEGHIICLLFLSALVGVTLTQCLYLIGLEYTSATFACAFLNMVPVFTFIMALPLGIEKVN 129

Query: 127 VNGLAGKTKVLGTVVCVGGAVLLTLYKG-KLI-SNPHLPATNYNVTSHAKMMISSKKTER 184
           +  L+ K KVLGT VC+GGA++L LYKG  LI   P   A    +TS A       K ++
Sbjct: 130 MKNLSAKAKVLGTFVCIGGALMLILYKGVPLIKQQPEHLADKGTITSPAS------KLKK 183

Query: 185 WIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPG 244
           WIIGS+ L AGC  WSSWFLMQARI K++PCQYSST I+S F AIQSAIL+L+I+R+   
Sbjct: 184 WIIGSLLLTAGCLLWSSWFLMQARISKKYPCQYSSTAILSSFAAIQSAILTLVIDRSNAK 243

Query: 245 WVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRE 304
           W+LKGKLE + V+Y G+VGSGLCYV MSWCVK+RGPVFTSAF+PL Q+ VA+ DFS+L E
Sbjct: 244 WILKGKLEIMTVVYAGLVGSGLCYVAMSWCVKQRGPVFTSAFTPLLQMFVAVLDFSILHE 303

Query: 305 RIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCD---AASHVIPITS 361
            IYLGS  GS+LVI G YILLWGKSKE EE   +K  Q +Q+DE       AS  +P   
Sbjct: 304 EIYLGSIAGSVLVISGTYILLWGKSKE-EEQSAVKGTQESQEDEESKNNLGASPNVPSKL 362

Query: 362 NPT 364
            P 
Sbjct: 363 RPN 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2102881	364	UMAMIT32 "Usually multiple aci	0.969	0.975	0.5	5.3e-95
TAIR|locus:2125172	365	UMAMIT31 "Usually multiple aci	0.934	0.936	0.472	8.3e-90
TAIR|locus:2116967	361	UMAMIT30 "Usually multiple aci	0.915	0.927	0.459	2.8e-82
TAIR|locus:2200990	365	UMAMIT28 "Usually multiple aci	0.907	0.909	0.418	6.7e-72
TAIR|locus:2125167	365	UMAMIT29 "Usually multiple aci	0.948	0.950	0.394	2.9e-71
TAIR|locus:2200056	352	UMAMIT27 "Usually multiple aci	0.915	0.951	0.399	1e-68
TAIR|locus:2200041	337	UMAMIT26 "Usually multiple aci	0.879	0.955	0.406	1.2e-67
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.934	0.914	0.363	8.5e-65
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.953	0.897	0.379	2.3e-64
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.882	0.803	0.380	1.6e-61

TAIR|locus:2102881 UMAMIT32 "Usually multiple acids move in and out Transporters 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 180/360 (50%), Positives = 244/360 (67%)

Query:     7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK 66
             W  VLMM  +N G + VN   +K+ID GLN +V   YR ++  +FL P   F ER NRPK
Sbjct:     9 WKAVLMMSMINIGLSVVNVMFKKMIDEGLNRMVATTYRLAVGTLFLIPFAIFLERHNRPK 68

Query:    67 LTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVN 126
             LT  ILC LFFSAL+G +L QYF L GLEYTS+TF  AF N VP +TF LAL F  E +N
Sbjct:    69 LTGRILCSLFFSALLGTSLVQYFFLIGLEYTSSTFSLAFSNMVPSVTFALALVFRQETLN 128

Query:   127 VNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWI 186
             +    G+ K+LGT++C+ GA++LTLYKG  +S  H    + ++ +H +   +   T++W 
Sbjct:   129 IKSNVGRAKLLGTMICICGALVLTLYKGTALSREH----STHMETHTRTDSTGAMTQKWA 184

Query:   187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV 246
             +GSI L+     WSSWF++QA+I + +PCQY+STTI+SFFG IQSA+LSLI ER+   WV
Sbjct:   185 MGSIMLVISIIIWSSWFIVQAKISRVYPCQYTSTTILSFFGVIQSALLSLISERSTSMWV 244

Query:   247 LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERI 306
             +K K + + ++Y G+VGSGLCYVGMSWC+++RG VFTS+F PL Q+  AIF FS L E+I
Sbjct:   245 VKDKFQVLALLYSGIVGSGLCYVGMSWCLRQRGAVFTSSFIPLIQVFAAIFSFSFLHEQI 304

Query:   307 YLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITSNPTSS 366
             Y GS +GS+++IVG+YILLWGKSK+ +     KQ       E C  A   +  T++  S+
Sbjct:   305 YCGSVIGSMVIIVGLYILLWGKSKD-KSASVTKQEPLDLDIEGCGTAPKELNSTAHQVSA 363

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2125172 UMAMIT31 "Usually multiple acids move in and out Transporters 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 164/347 (47%), Positives = 239/347 (68%)

Query:     3 CHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERK 62
             C G+W PV++MV +N      NA ++K++D G+NH+VI  YR +IS +FLAPI +F ERK
Sbjct:     4 CDGKWTPVIIMVMINSALGLANALVKKVLDGGVNHMVIATYRLAISTLFLAPIAFFWERK 63

Query:    63 NRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGL 122
              RP LT++IL QLFFSAL+G +LTQYF L GL YTSAT  CAF++  P ITF++AL F +
Sbjct:    64 TRPTLTLNILVQLFFSALVGASLTQYFFLLGLSYTSATLACAFISMTPAITFVMALIFRV 123

Query:   123 EKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKT 182
             EK+N+   AG   V+G ++C+GGA+LLT+YKG  ++      T+  + ++  M     K 
Sbjct:   124 EKLNMKSKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAM-----KP 178

Query:   183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL 242
             E WIIG + L AG + + SW L+QA++ +++PCQYSST ++SFFG IQ A+LSLI  R++
Sbjct:   179 ENWIIGCVLLFAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLIKSRDI 238

Query:   243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVL 302
               W+L  KL+ + ++Y G V  G+C VG SWC++KRGP+FTS F+P+  I   +FDF +L
Sbjct:   239 TAWILTDKLDIVTIVYAGAVAQGICTVGTSWCIRKRGPIFTSIFTPVGLIFATLFDFLIL 298

Query:   303 RERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDER 349
               +I+LGS +GS +VI G+YI L GK + ++E  + K      +D++
Sbjct:   299 HRQIFLGSVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQ 345

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2116967 UMAMIT30 "Usually multiple acids move in and out Transporters 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 159/346 (45%), Positives = 227/346 (65%)

Query:     5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNR 64
             G+W P+++++  N     VNA ++K++D G+NH+VI  YR  IS +FL P+ YF ERK R
Sbjct:     6 GKWAPMIVLIVSNMIAGMVNALVKKVLDGGINHMVIATYRLGISTLFLLPVAYFWERKTR 65

Query:    65 PKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEK 124
             PKLT+ I CQLF SAL G +L QYF L GL YTSAT   AF   +P +TF++AL FG EK
Sbjct:    66 PKLTLSISCQLFVSALFGASLMQYFYLLGLSYTSATLGSAFWAIMPSLTFVMALIFGFEK 125

Query:   125 VNVNGLAGKTKVLGTVVCVGGAVLLTLYKG-KLISNPHLPATNYNVTSHAKMMISSKKTE 183
             +++    G   VLGT++ + G +LLT+Y+G  L ++P   A + N T H          E
Sbjct:   126 LSLKTKIGYGVVLGTLISLVGGLLLTMYQGIPLTNSPEQAANSNNHTGH----------E 175

Query:   184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP 243
              WI G  FL+ G   +SSW L+QA+I  ++PC YSST I+S FG +Q A+LSLI  R+L 
Sbjct:   176 NWIKGCFFLLTGVVLFSSWMLIQAKINVKYPCPYSSTVILSVFGTLQCALLSLIKTRHLE 235

Query:   244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLR 303
              W+L+ +L  I V+  G+V  G+C VGMSWC+K++GPV +S+FSP+  +   +FDF +L 
Sbjct:   236 DWILRDELTIITVVIAGVVAQGMCTVGMSWCIKQQGPVVSSSFSPVVLMSATVFDFLILH 295

Query:   304 ERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDER 349
               IYLGS +GS++V++G+YI LW +SK+I E   MK      ++E+
Sbjct:   296 REIYLGSVIGSVVVVIGLYIFLWSRSKQIVECKIMKLPTNTVEEEK 341

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2200990 UMAMIT28 "Usually multiple acids move in and out Transporters 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 141/337 (41%), Positives = 203/337 (60%)

Query:     6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP 65
             ++ PV++MV  N    +VNA ++K +D G+NH+VI AYR +IS + L P  Y  ERK RP
Sbjct:    13 KYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILVPFAYVLERKTRP 72

Query:    66 KLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKV 125
             ++T  ++   F S L+G +L Q+F L GL YTSAT  CA ++ +P ITF LAL F  E V
Sbjct:    73 QITFRLMVDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTENV 132

Query:   126 NV-NGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTER 184
              +    AG  KV+GT++C+ GA+ LT YKG  ISN H  + ++   SH        K   
Sbjct:   133 KILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSH--SHSHGGASHNNN--DQDKANN 188

Query:   185 WIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPG 244
             W++G ++L  G    S W L Q  +  ++PC+YSST ++S F A Q A+LSL   R++  
Sbjct:   189 WLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSLYKSRDVND 248

Query:   245 WVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRE 304
             W++  +     +IY G+VG  +  V  +W +KK G VF SAF PLT I   +FDF +L  
Sbjct:   249 WIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHT 308

Query:   305 RIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQG 341
              +YLGS +GS++ I G+Y+ LWGK+KE E    +  G
Sbjct:   309 PLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSG 345

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2125167 UMAMIT29 "Usually multiple acids move in and out Transporters 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 140/355 (39%), Positives = 215/355 (60%)

Query:     6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP 65
             QW PV++M+  +    +VNA ++K +D G+NH++  AYR +IS + L P  Y  ERK RP
Sbjct:     6 QWAPVIVMLISSVAMGSVNALVKKALDVGVNHMIFGAYRMAISALILVPFSYIWERKTRP 65

Query:    66 KLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKV 125
             +LT  +LC+ F S L+G +L Q+F L GL YTSAT   A ++ +P ITF LAL F +E  
Sbjct:    66 QLTFMLLCEHFISGLLGASLMQFFFLLGLSYTSATVSMALVSMLPAITFALALIFRIENA 125

Query:   126 -NVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL-PATNYNVTSHAKMMISSKKTE 183
              N+   AG  KV+GT++C+ GA+LLT YKG  +SNPH  P   +N  ++        +T+
Sbjct:   126 QNLKSKAGVLKVMGTLICIMGAMLLTFYKGPELSNPHSHPQARHNNNNNN----GHDQTK 181

Query:   184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPC-QYSSTTIISFFGAIQSAILSLIIERNL 242
             +W++G ++L+ G    S W L Q ++  ++P  +YSST ++S F + Q AILSL   R++
Sbjct:   182 KWLLGCLYLVIGTVLLSLWMLFQGKLSFKYPGNKYSSTCLMSVFASFQCAILSLYKSRDV 241

Query:   243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVL 302
               W+++ K   +  +Y G+VG  +  V  SW +K  G VF S FSP++ +   +FDF +L
Sbjct:   242 KDWIIEDKFVILVTLYAGIVGQAMSTVVTSWSIKMTGAVFVSTFSPVSLVAATLFDFLIL 301

Query:   303 RERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVI 357
                +YLGS LGS++ I G+Y+ LWG+  E ++    K   ++Q  +  D   H I
Sbjct:   302 HSPLYLGSILGSVVTITGLYVFLWGRKNETDQ-SVSKTLNSSQFSQNKDNEDHTI 355

GO:0016020 "membrane" evidence=IEA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2200056 UMAMIT27 "Usually multiple acids move in and out Transporters 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 139/348 (39%), Positives = 207/348 (59%)

Query:     6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP 65
             +W P+++MV       +VNA ++K +D G+NH++I AYR +IS   L PI YF ERK  P
Sbjct:    13 KWPPMIVMVTSQVAMGSVNALVKKALDVGVNHMIIGAYRMAISSFILVPIAYFLERKIIP 72

Query:    66 KLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKV 125
             K+T  ++   F S L+G +L Q+F L GL YTSAT  CA ++ +P ITF  AL    EK+
Sbjct:    73 KITFRLMVDHFISGLLGASLMQFFYLLGLSYTSATVACALVSLMPAITFAFALILRTEKI 132

Query:   126 -NVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH--LPATNYNVTSHAKMMISSKKT 182
              ++   AG  KV+GT++C+ GA+ LT YKG  ISN H  L A  +N + H         T
Sbjct:   133 KDLKTQAGMIKVMGTLICISGALFLTFYKGPHISNSHSHLEALPHNNSDH--------NT 184

Query:   183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL 242
             + W++G ++L+ G    S W L Q  +  ++PC++SST ++S F A Q A+LSL   R+L
Sbjct:   185 KNWLLGCLYLVIGIVLLSLWILFQGTLSIKYPCKFSSTCLMSIFAAFQCALLSLYKSRDL 244

Query:   243 PGWVLKGKLETIGVI-YCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSV 301
               W++      IGVI Y G++G  +  V  +W + + G VF SA  P++ I   +FDF +
Sbjct:   245 KHWIIDDGF-VIGVIIYAGVIGQAMSTVAATWGINRLGAVFASAIMPVSLISATLFDFLI 303

Query:   302 LRERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDER 349
             L   +YLGS +GS+  I+G+Y+ LWGK+KE E        +   +D+R
Sbjct:   304 LHTPLYLGSVIGSVGTIIGLYVFLWGKNKETEADITTLSSRMNNEDQR 351

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2200041 UMAMIT26 "Usually multiple acids move in and out Transporters 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 134/330 (40%), Positives = 202/330 (61%)

Query:     6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP 65
             +W P+++MV       +VNA ++K +D G+NH++I AYR +IS   LAPI Y  ER+  P
Sbjct:    13 KWPPIIVMVISQVAMGSVNALVKKALDVGVNHMIIGAYRIAISSFILAPIAYILEREIIP 72

Query:    66 KLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKV 125
             ++T  ++   F S L+G +L Q+F L GL YTSAT  CA ++ +P ITF  AL    EK+
Sbjct:    73 EITFRLMVDHFISGLLGASLMQFFYLLGLSYTSATVACALVSLMPAITFAFALILRTEKI 132

Query:   126 -NVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTER 184
              ++   AG  KV+GT++C+ GA+ LT YKG  ISN H   ++     H     S   T+ 
Sbjct:   133 KSLRTQAGMIKVMGTIICISGALFLTFYKGPHISNSH---SHQEALPHNNN--SDHNTKN 187

Query:   185 WIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPG 244
             W++G ++L  G    S W L Q  +  ++PC++SST ++S F A Q A+LSL   R++  
Sbjct:   188 WLLGCLYLTIGTVLISLWILFQGTLSIKYPCKFSSTCLMSIFAAFQCALLSLYKSRDVKD 247

Query:   245 WVLKGKLETIGVI-YCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLR 303
             W++  +   IGVI Y G++G  +  V ++W VKK G VF SA  P+  I  ++FDF +L 
Sbjct:   248 WIIDDRF-VIGVIVYAGVIGQAMSTVSVTWGVKKLGAVFVSAIMPIALISASLFDFIILH 306

Query:   304 ERIYLGSALGSILVIVGMYILLWGKSKEIE 333
               +YLGS +GS+  I G+Y+ LWGK+K++E
Sbjct:   307 TPLYLGSLIGSVGTITGLYVFLWGKNKDME 336

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 128/352 (36%), Positives = 211/352 (59%)

Query:     8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKL 67
             +P L MV V  G+A +N   +  ++ G+  L++VAYRQ  + +   P+ +F ERK RPK+
Sbjct:     7 LPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKI 66

Query:    68 TIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNV 127
             T+ IL Q+FF ++ G T  Q     GL+ +S T  CA  N +P +TFLLA  F  E V +
Sbjct:    67 TLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGI 126

Query:   128 NGLAGKTKVLGTVVCVGGAVLLTLYKGKLI----SNPHLPATNYNVTSHAKMMISSKKTE 183
                +G+ KV+GT+VCV GA++L+ Y G  I    S  H  A   N+T H     SS    
Sbjct:   127 KKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHW-AYAENITKHG----SSSGHS 181

Query:   184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP 243
              + +G   ++A   +W++WF++Q ++ + F   Y+ST ++   G+IQ   ++LI +  + 
Sbjct:   182 NFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTIS 241

Query:   244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLR 303
              W L   L  I  +Y G+V S L +  MSW ++++GP++ S FSPL  +VVAIF +++L 
Sbjct:   242 DWSLSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLE 301

Query:   304 ERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASH 355
             E++Y G+ +GS LV++G+Y +LWGK +E+ E ++ ++ +  QQ+ +  + S+
Sbjct:   302 EKLYTGTFMGSALVVIGLYGVLWGKDREVSEKEEERE-KVKQQNHKVKSESN 352

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 137/361 (37%), Positives = 205/361 (56%)

Query:    11 LMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIH 70
             + M+ + FG+A  +   R  ++ G++ LV   YR  I+++ L P  YF E+K RP +T++
Sbjct:    22 IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPAITLN 81

Query:    71 ILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGL 130
              L Q FF ALIG+T  Q F L GL+ TS TF  +  N+VP ITFL+A    +EKV +N  
Sbjct:    82 FLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINRR 141

Query:   131 AGKTKVLGTVVCVGGAVLLTLYKGKLISNP--HLPATNYNVTSHAKMMISSKKTERWIIG 188
              G +K+LGT +CV GA ++TLYKG  I  P  HL A      S     + +   + W +G
Sbjct:   142 DGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTLG 201

Query:   189 SIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLK 248
              I+LI  C +WS W + QA + K +P + S T+   FFG IQ  I++   ER+   WV  
Sbjct:   202 CIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVFH 261

Query:   249 GKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYL 308
                E   ++Y G+V SG+ +    WC+ + GPVF + + P+  +VVAI     L E  YL
Sbjct:   262 SGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYL 321

Query:   309 GSALGSILVIVGMYILLWGKSKEIEEFDQMKQGQAAQQDERCDAASHVI---PITSNPTS 365
             G  +G++L+I G+Y +L+GKS+E  +F  +++  AA Q     +A H I   P++ N   
Sbjct:   322 GGIIGAVLIIAGLYFVLYGKSEE-RKFAALEK--AAIQS----SAEHGIERAPVSRNSIK 374

Query:   366 S 366
             S
Sbjct:   375 S 375

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 124/326 (38%), Positives = 196/326 (60%)

Query:     9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLT 68
             P   M+++ FG+A +N   +  ++ G++H V+V YR +I+   +AP  +F ERK +PK+T
Sbjct:    18 PYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKIT 77

Query:    69 IHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVN 128
               I  QLF   L+G  + Q F   GL+YTS TF CA  N +P +TF+LA+ F +E +++ 
Sbjct:    78 FSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLK 137

Query:   129 GLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMIS--SKKTERWI 186
              L  + K+ GTVV V GA+L+T+YKG ++        +   +SHA    S  S   + ++
Sbjct:   138 KLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFL 197

Query:   187 IGSIFLIAGCTTWSSWFLMQARIGKRFPC-QYSSTTIISFFGAIQSAILSLIIERNLPGW 245
              GSI LI     W+S F++QA+I K +   Q S TT+I F G +Q+  ++ ++E N   W
Sbjct:   198 KGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAW 257

Query:   246 VLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRER 305
              +   +  +   Y G+V S + Y      +KKRGPVF +AFSPL  ++VA+    VL E+
Sbjct:   258 RIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEK 317

Query:   306 IYLGSALGSILVIVGMYILLWGKSKE 331
             I+LG  +G++L+++G+Y +LWGK KE
Sbjct:   318 IFLGGVIGAVLIVIGLYAVLWGKQKE 343

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LI65	WTR24_ARATH	No assigned EC number	0.5	0.9699	0.9752	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-36
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-08
pfam00892	126	pfam00892, EamA, EamA-like transporter family	1e-07
pfam00892	126	pfam00892, EamA, EamA-like transporter family	6e-06

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  135 bits (341), Expect = 2e-36
 Identities = 88/330 (26%), Positives = 169/330 (51%), Gaps = 13/330 (3%)

Query: 13  MVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRER-KNRPKLTIHI 71
           M+A       ++   +    +GLN    + Y   ++ + L P ++F  R ++ P L++ I
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 72  LCQLFFSALIG--LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNG 129
           L ++     +G    +T Y    G+EY++ T   A  N  P +TF+LA+ F +EKV+   
Sbjct: 78  LSKIGLLGFLGSMYVITGYI---GIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKE 134

Query: 130 LAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGS 189
            +   KV+GT++ + GA+++  Y G  +     P    N    +  + SS     W+IG 
Sbjct: 135 RSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY-LNFRQLSPPLSSSNSD--WLIGG 191

Query: 190 IFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPG-WVLK 248
             L       S  F++QA I   +P  ++ + + +   +I ++++ L++E+N P  W++ 
Sbjct: 192 ALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIH 251

Query: 249 GKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYL 308
             +  I ++   ++ S + YV  SW V+ +GP++ + F PL+ ++  +     L + +YL
Sbjct: 252 FDITLITIVTMAIITS-VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL 310

Query: 309 GSALGSILVIVGMYILLWGKSKEIEEFDQM 338
           G  +G IL+ +G Y ++WGK+   EE DQ+
Sbjct: 311 GCLIGGILITLGFYAVMWGKAN--EEKDQL 338

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 61/324 (18%), Positives = 124/324 (38%), Gaps = 38/324 (11%)

Query: 8   MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKL 67
           + +L ++     +      L+  ++     L   A R  I+ + L P++    R  RP L
Sbjct: 7   LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPAL 66

Query: 68  TIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNV 127
              +L  L   AL+GL L    L   L+YTSA+     +  +P+ T LLA+   L +   
Sbjct: 67  RPWLL--LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERL- 123

Query: 128 NGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWII 187
                  ++LG ++ + G +L+ L  G                               ++
Sbjct: 124 ----SLLQILGILLALAGVLLILLGGGGGGILS-------------------------LL 154

Query: 188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVL 247
           G +  +A    W+ +  +  R+ +  P   +   ++    A+   +L  +     P    
Sbjct: 155 GLLLALAAALLWALYTALVKRLSRLGP--VTLALLLQLLLALLLLLLFFLSGFGAPILSR 212

Query: 248 KGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIY 307
                 + ++Y G+  +GL Y+   + ++  G    +  S L  +  A+    +L E + 
Sbjct: 213 ----AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLS 268

Query: 308 LGSALGSILVIVGMYILLWGKSKE 331
               LG+ LV++G+ +      + 
Sbjct: 269 PAQLLGAALVVLGVLLASLRARRR 292

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 7/129 (5%)

Query: 23  VNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIG 82
           +     K +   ++ L   AYR  +    L  ++ F  RK    L++  +  L +  L G
Sbjct: 5   LYFVFSKKLLERISPLTFTAYR-FLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFG 63

Query: 83  LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVC 142
             L        L+Y SA+      +  PV T +L++    EK+         ++LG V+ 
Sbjct: 64  TALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLT------LKQLLGIVLI 117

Query: 143 VGGAVLLTL 151
           + G +L+ L
Sbjct: 118 LLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 198 TWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVI 257
           +W+ +F+   ++ +R     + T        I   +L  ++ +      LK  L    ++
Sbjct: 2   SWALYFVFSKKLLERIS-PLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAIL---ALL 57

Query: 258 YCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILV 317
           Y G+ G+ L Y+   + +K       S  + L+ +   I    +L E++ L   LG +L+
Sbjct: 58  YLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLI 117

Query: 318 IVGMYILLW 326
           ++G+ ++L 
Sbjct: 118 LLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	100.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.98
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.96
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.95
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.95
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.93
COG2962	293	RarD Predicted permeases [General function predict	99.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.9
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.9
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.86
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.85
KOG2765	416	consensus Predicted membrane protein [Function unk	99.82
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.8
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.7
KOG2766	336	consensus Predicted membrane protein [Function unk	99.68
KOG1580	337	consensus UDP-galactose transporter related protei	99.66
COG2510	140	Predicted membrane protein [Function unknown]	99.66
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.61
KOG1581	327	consensus UDP-galactose transporter related protei	99.6
COG2510	140	Predicted membrane protein [Function unknown]	99.54
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.54
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.53
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.5
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.38
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.33
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.32
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.3
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.29
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.23
KOG1582	367	consensus UDP-galactose transporter related protei	99.23
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.2
PRK13499	345	rhamnose-proton symporter; Provisional	99.15
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.15
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.13
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.12
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.09
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.08
PRK11272	292	putative DMT superfamily transporter inner membran	99.07
PRK15430	296	putative chloramphenical resistance permease RarD;	99.06
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.06
PRK11689	295	aromatic amino acid exporter; Provisional	99.04
PLN00411	358	nodulin MtN21 family protein; Provisional	99.01
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.97
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.96
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.89
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.88
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.81
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.76
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.74
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.74
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.67
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.66
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.61
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.55
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.52
COG2962	293	RarD Predicted permeases [General function predict	98.43
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.4
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.34
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.25
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.21
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.08
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	97.91
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.83
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.83
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.79
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.79
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.79
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.77
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.64
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.59
COG2076	106	EmrE Membrane transporters of cations and cationic	97.56
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.51
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.5
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.5
PRK11431	105	multidrug efflux system protein; Provisional	97.45
KOG2765	416	consensus Predicted membrane protein [Function unk	97.39
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.38
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.37
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.35
COG2076	106	EmrE Membrane transporters of cations and cationic	97.29
PRK11431	105	multidrug efflux system protein; Provisional	97.23
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.98
PRK13499	345	rhamnose-proton symporter; Provisional	96.96
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.96
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.87
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.61
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.36
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.32
KOG1581	327	consensus UDP-galactose transporter related protei	96.26
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.91
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	95.64
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.61
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.55
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.16
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.92
KOG1580	337	consensus UDP-galactose transporter related protei	94.19
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.4
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	93.3
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	93.01
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	91.15
KOG1443	349	consensus Predicted integral membrane protein [Fun	90.57
KOG4831	125	consensus Unnamed protein [Function unknown]	90.22
KOG1582	367	consensus UDP-galactose transporter related protei	87.17
PRK02237	109	hypothetical protein; Provisional	87.12
KOG3912	372	consensus Predicted integral membrane protein [Gen	84.53
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	84.11
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	81.38
PRK06638	198	NADH:ubiquinone oxidoreductase subunit J; Provisio	80.34

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=9.8e-38  Score=291.71  Aligned_cols=321  Identities=24%  Similarity=0.521  Sum_probs=254.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCHHHHHHHHHHHHH
Q 041425            3 CHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRER-KNRPKLTIHILCQLFFSALI   81 (366)
Q Consensus         3 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~   81 (366)
                      +++..+.++.+++..+.++...++.|..++.|++|..+.++|+.++.++++++.++++| +++++.+++++..+.+.|++
T Consensus         8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~   87 (358)
T PLN00411          8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL   87 (358)
T ss_pred             hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            35677999999999999999999999999999999999999999999999998876544 33344568889999999999


Q ss_pred             HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhh------ccccccccccccccceehhhhhhhhhhHhhhhcCc
Q 041425           82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF------GLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGK  155 (366)
Q Consensus        82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~  155 (366)
                      + .+.+.+++.+++|++++.++++.++.|+++.++++++      +|||+++.+      ++|+++++.|+.++..+++.
T Consensus        88 g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~------~~G~~l~~~Gv~ll~~~~g~  160 (358)
T PLN00411         88 G-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAK------VMGTILSLIGALVVIFYHGP  160 (358)
T ss_pred             H-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHH------HHHHHHHHHHHHHHHHccCc
Confidence            9 7888899999999999999999999999999999999      599999999      99999999999998754442


Q ss_pred             ccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 041425          156 LISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILS  235 (366)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  235 (366)
                      .....+.+. .+|..++.  .....+..+...|+++++.++++||+|++.+|+..+++++....++++..++.+...+..
T Consensus       161 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~  237 (358)
T PLN00411        161 RVFVASSPP-YLNFRQLS--PPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIG  237 (358)
T ss_pred             ccccccccc-cccccccc--cccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHH
Confidence            110000000 00000000  000011234467999999999999999999999988887666677777777777776666


Q ss_pred             HHHhc-CCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHH
Q 041425          236 LIIER-NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGS  314 (366)
Q Consensus       236 ~~~~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~  314 (366)
                      ...++ +...|.......+..+++.++. +.++|.+|++++++.+|++++.+.+++|+++++++++++||++++.+++|+
T Consensus       238 l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~  316 (358)
T PLN00411        238 LVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGG  316 (358)
T ss_pred             HHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            66543 2333322222334557777765 568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhccccchhhh
Q 041425          315 ILVIVGMYILLWGKSKEIEE  334 (366)
Q Consensus       315 ~lii~g~~l~~~~~~~~~~~  334 (366)
                      ++|+.|+++..+.++||.++
T Consensus       317 ~LIl~Gv~l~~~~~~~~~~~  336 (358)
T PLN00411        317 ILITLGFYAVMWGKANEEKD  336 (358)
T ss_pred             HHHHHHHHHHHhhhhhhhhh
Confidence            99999999998866655443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=250.95  Aligned_cols=280  Identities=14%  Similarity=0.172  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ   87 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (366)
                      .-.+..++..++||..+++.|...++ ++|.+++++|+.++.++++++...++++   ..+++++......|.++...++
T Consensus         8 ~~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272          8 PLFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHH
Confidence            34567788889999999999988885 9999999999999999988877543222   2356788888889988767888


Q ss_pred             HHHHHhc-cccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcc
Q 041425           88 YFLLRGL-EYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATN  166 (366)
Q Consensus        88 ~~~~~al-~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~  166 (366)
                      .+++.+. ++++++.++++.++.|+++.+++++ +|||+++++      ++|++++++|+.++.. +++.          
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~-~~~~----------  145 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNS-GGNL----------  145 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhc-Cccc----------
Confidence            9999999 9999999999999999999999985 699999999      9999999999998852 1110          


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 041425          167 YNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV  246 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  246 (366)
                                      +....|++++++++++||.|.+..|+..++ + +...+.+++..+.+.+.+.....+.+..  .
T Consensus       146 ----------------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  205 (292)
T PRK11272        146 ----------------SGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLT--A  205 (292)
T ss_pred             ----------------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCccc--c
Confidence                            112579999999999999999999997654 2 3456678888888877777665332211  1


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          247 LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       247 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      ..+...|..+++.+++++.+++.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+++..+
T Consensus       206 ~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        206 LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            12346788999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             ccc
Q 041425          327 GKS  329 (366)
Q Consensus       327 ~~~  329 (366)
                      .++
T Consensus       286 ~~~  288 (292)
T PRK11272        286 GKY  288 (292)
T ss_pred             HHh
Confidence            443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=247.63  Aligned_cols=281  Identities=15%  Similarity=0.158  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ   87 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (366)
                      +..+++++++++||..+++.|...++ ++|..+.++|+.++.+.++++..   +++   .+++   .....|++.....+
T Consensus         4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~~---~~~---~~~~---~~~~~g~~~~~~~~   73 (299)
T PRK11453          4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFVA---RPK---VPLN---LLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhc---CCC---CchH---HHHHHHHHHHHHHH
Confidence            34567899999999999999998886 99999999999998776665442   211   1222   34445665545666


Q ss_pred             HHHHHhccc-cCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcc
Q 041425           88 YFLLRGLEY-TSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATN  166 (366)
Q Consensus        88 ~~~~~al~~-~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~  166 (366)
                      .+++.++++ .+++.++++.++.|+++.+++++++|||+++++      +++++++++|+.++.. ++. .+        
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~-~~~-~~--------  137 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE-DSL-NG--------  137 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc-ccC-CC--------
Confidence            788889998 578999999999999999999999999999999      9999999999999852 111 00        


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc--hhHHHHHHHHHHHHHHHHHHHHhcCC--
Q 041425          167 YNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQ--YSSTTIISFFGAIQSAILSLIIERNL--  242 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~--  242 (366)
                                     .+....|+++++.++++|++|.+..|+..++.+++  .....+....+.+.........+++.  
T Consensus       138 ---------------~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (299)
T PRK11453        138 ---------------QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATM  202 (299)
T ss_pred             ---------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence                           01225799999999999999999999987654432  22333444444433333333333211  


Q ss_pred             -CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425          243 -PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM  321 (366)
Q Consensus       243 -~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~  321 (366)
                       ..+...+...|..++++++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|++++++|+
T Consensus       203 ~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv  282 (299)
T PRK11453        203 IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGL  282 (299)
T ss_pred             hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence             1111223457889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccc
Q 041425          322 YILLWGKS  329 (366)
Q Consensus       322 ~l~~~~~~  329 (366)
                      ++..+.++
T Consensus       283 ~l~~~~~~  290 (299)
T PRK11453        283 YINVFGLR  290 (299)
T ss_pred             HHHhcchh
Confidence            98777554

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=100.00  E-value=1.4e-31  Score=246.47  Aligned_cols=281  Identities=11%  Similarity=0.099  Sum_probs=211.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCC--C-CCCHHHHHHHHH
Q 041425            1 MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNR--P-KLTIHILCQLFF   77 (366)
Q Consensus         1 m~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~   77 (366)
                      |+|+++.+|++++++++++||..+++.|.. ++ ++|.++.++|+.++.+++.++...++++..  + ..+++++.. ..
T Consensus         1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~   77 (296)
T PRK15430          1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LA   77 (296)
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HH
Confidence            788889999999999999999999999964 54 999999999999999888777654322110  0 013344433 33


Q ss_pred             HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc
Q 041425           78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI  157 (366)
Q Consensus        78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~  157 (366)
                      .+.++.+.++.++++|++++|+++++++.++.|+++.+++++++|||+++++      +.|++++++|+.++....+   
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~---  148 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG---  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC---
Confidence            5556558999999999999999999999999999999999999999999999      9999999999999852110   


Q ss_pred             CCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHH
Q 041425          158 SNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSL  236 (366)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~  236 (366)
                                               +  .  ...+++++++||.|.+..|+..++.. +......++...+.....+.  
T Consensus       149 -------------------------~--~--~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  197 (296)
T PRK15430        149 -------------------------S--L--PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI--  197 (296)
T ss_pred             -------------------------C--c--cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH--
Confidence                                     0  0  14678899999999999999754311 11222233333333322111  


Q ss_pred             HHhcCCCcccccCchh-HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHH
Q 041425          237 IIERNLPGWVLKGKLE-TIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSI  315 (366)
Q Consensus       237 ~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~  315 (366)
                       .+.+...+. ..+.. +..++..|+ .+.++|.++++++++.+++.++.+.+++|+++.+++++++||+|++.+++|++
T Consensus       198 -~~~~~~~~~-~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~  274 (296)
T PRK15430        198 -ADSSTSHMG-QNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFA  274 (296)
T ss_pred             -ccCCccccc-CCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence             111111111 11222 233344454 67899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcc
Q 041425          316 LVIVGMYILLWG  327 (366)
Q Consensus       316 lii~g~~l~~~~  327 (366)
                      +|+.|+.+....
T Consensus       275 lI~~~~~v~~~~  286 (296)
T PRK15430        275 FIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHH
Confidence            999887776543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=2.8e-31  Score=244.38  Aligned_cols=284  Identities=13%  Similarity=0.105  Sum_probs=214.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL   85 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   85 (366)
                      +.+++++++++.++||.+++..|...++ ++|..+.++|+.++.++++++..   +++.++.   + ++..+.+.++...
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~~---~~~~~~~---~-~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTVG---FPRLRQF---P-KRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHcc---ccccccc---c-HHHHHHHhHHHHH
Confidence            4678999999999999999999998887 99999999999999998887531   2111111   2 2233445555577


Q ss_pred             HHHHHHHhccc----cCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCC
Q 041425           86 TQYFLLRGLEY----TSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH  161 (366)
Q Consensus        86 ~~~~~~~al~~----~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  161 (366)
                      +..+++.++++    .+++.++++.++.|+++.+++++++|||+++++      ++|++++++|+.++.. ++...+.  
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~-~~~~~~~--  144 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLG-GDNGLSL--  144 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheec-CCccchh--
Confidence            78888877754    577888999999999999999999999999999      9999999999999862 2110000  


Q ss_pred             CCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 041425          162 LPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERN  241 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  241 (366)
                                    .+.+.+..+...|++++++++++||.|++..|+..++++ +...  .. ..+.+.+.+.... +++
T Consensus       145 --------------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~~-~~~~~~l~~~~~~-~~~  205 (295)
T PRK11689        145 --------------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--FF-ILTALALWIKYFL-SPQ  205 (295)
T ss_pred             --------------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--HH-HHHHHHHHHHHHH-hcC
Confidence                          000001112356999999999999999999999887644 3432  22 2333333333333 221


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425          242 LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM  321 (366)
Q Consensus       242 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~  321 (366)
                      . ... .+...|..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+
T Consensus       206 ~-~~~-~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv  282 (295)
T PRK11689        206 P-AMV-FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGS  282 (295)
T ss_pred             c-ccc-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhH
Confidence            1 111 12356777777774 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccc
Q 041425          322 YILLWGK  328 (366)
Q Consensus       322 ~l~~~~~  328 (366)
                      ++..+.+
T Consensus       283 ~~~~~~~  289 (295)
T PRK11689        283 LLCWLAT  289 (295)
T ss_pred             HHHhhhH
Confidence            8876533

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=100.00  E-value=1.1e-30  Score=240.09  Aligned_cols=279  Identities=13%  Similarity=0.118  Sum_probs=224.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHH
Q 041425            4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGL   83 (366)
Q Consensus         4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   83 (366)
                      .++.+++.+++++.+.|+..+.+.|...++ ++|..+.++|++++.++++++...  ++  ++.+++++...+..|.+. 
T Consensus         8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~-   81 (293)
T PRK10532          8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSL-   81 (293)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHH-
Confidence            446799999999999999999999999997 999999999999999988876532  11  124567888888888886 


Q ss_pred             HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCC
Q 041425           84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLP  163 (366)
Q Consensus        84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  163 (366)
                      ...+.+++++++|+|++.++++.++.|+++.+++.    |++.  +      ..++.+++.|+.++. ..+...      
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~------~~~~~i~~~Gv~li~-~~~~~~------  142 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--D------FVWVVLAVLGLWFLL-PLGQDV------  142 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--H------HHHHHHHHHHHheee-ecCCCc------
Confidence            88889999999999999999999999999998873    5543  3      456778899998875 221100      


Q ss_pred             CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041425          164 ATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP  243 (366)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  243 (366)
                                        ......|++++++++++||.|.+..|+..++++ +... .+....+++.+.++....+.+ .
T Consensus       143 ------------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~  201 (293)
T PRK10532        143 ------------------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-A  201 (293)
T ss_pred             ------------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-c
Confidence                              011257999999999999999999999987754 4444 455566666666666543221 1


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425          244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI  323 (366)
Q Consensus       244 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l  323 (366)
                      .   .+...|..++++|++++.++|.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|+++|++|++.
T Consensus       202 ~---~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~  278 (293)
T PRK10532        202 L---WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMG  278 (293)
T ss_pred             c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            1   1223455678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccch
Q 041425          324 LLWGKSKE  331 (366)
Q Consensus       324 ~~~~~~~~  331 (366)
                      ..+..+||
T Consensus       279 ~~~~~~~~  286 (293)
T PRK10532        279 STLTIRRE  286 (293)
T ss_pred             HHhcCCCC
Confidence            87665443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.98  E-value=2.5e-30  Score=234.14  Aligned_cols=258  Identities=17%  Similarity=0.223  Sum_probs=218.9

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 041425           20 FATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSA   99 (366)
Q Consensus        20 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~   99 (366)
                      ||.++++.|..++++.|+....+.|+..+.+++.++...+       .+++++.+....|.++..+++.++++|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            8999999999888778999999999999988887765322       245677788888888889999999999999999


Q ss_pred             hhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccc
Q 041425          100 TFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISS  179 (366)
Q Consensus       100 ~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
                      ++++++.++.|+++.+++++++|||+++++      +.|++++++|+.++.. +++                        
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~~------------------------  122 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DGN------------------------  122 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CCc------------------------
Confidence            999999999999999999999999999999      9999999999999852 211                        


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHH
Q 041425          180 KKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPC-QYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIY  258 (366)
Q Consensus       180 ~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  258 (366)
                        .+....|+.++++++++|+.+.+..|+..++.+. +.....+++..+.+.+.+.....+++. ..   +...|..+++
T Consensus       123 --~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~  196 (260)
T TIGR00950       123 --LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLY  196 (260)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHH
Confidence              0123689999999999999999999998876542 234444677888888877776543221 11   3356777888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425          259 CGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM  321 (366)
Q Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~  321 (366)
                      .+++++.+++.++++++++.++.+++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus       197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       197 LGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999899999999999999999999999999999999999999999999999999999999986

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=5.2e-29  Score=230.35  Aligned_cols=281  Identities=13%  Similarity=0.079  Sum_probs=218.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041425           14 VAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRG   93 (366)
Q Consensus        14 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a   93 (366)
                      ++--++-....++.|..+++-..|..+++.|+.++.+.+.+... ...+++++.+++++++++..|+++ +++..+.+.+
T Consensus         8 ~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~   85 (302)
T TIGR00817         8 GLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVS   85 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            33334444555788998886356999999999998877655521 122233456789999999999997 9999999999


Q ss_pred             ccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccc
Q 041425           94 LEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHA  173 (366)
Q Consensus        94 l~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~  173 (366)
                      ++|++++.++++.++.|+++++++++++|||+++++      +.|+++++.|+.+..  .++ .                
T Consensus        86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~~~-~----------------  140 (302)
T TIGR00817        86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--DTE-L----------------  140 (302)
T ss_pred             HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--CCc-c----------------
Confidence            999999999999999999999999999999999999      999999999998763  111 0                


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC---cccc-
Q 041425          174 KMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGK--RFPCQYSSTTIISFFGAIQSAILSLIIERNLP---GWVL-  247 (366)
Q Consensus       174 ~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~-  247 (366)
                               +....|++++++++++|++|.+..|+..+  ++ ++...+.++...+++.+.|+....++...   .+.. 
T Consensus       141 ---------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~  210 (302)
T TIGR00817       141 ---------SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQA  210 (302)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHh
Confidence                     11257999999999999999999999887  54 46789999999999999998876543110   0100 


Q ss_pred             ----cCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425          248 ----KGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI  323 (366)
Q Consensus       248 ----~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l  323 (366)
                          .....+...++.+..+....+.++++++++.++++.++..+++|+++++++++++||+++..+++|+++++.|+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l  290 (302)
T TIGR00817       211 ISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL  290 (302)
T ss_pred             hcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence                0001121122333323333445667899999999999999999999999999999999999999999999999999


Q ss_pred             hhccccch
Q 041425          324 LLWGKSKE  331 (366)
Q Consensus       324 ~~~~~~~~  331 (366)
                      +.+.|.++
T Consensus       291 ~~~~k~~~  298 (302)
T TIGR00817       291 YSRVKAQK  298 (302)
T ss_pred             HHHHhccC
Confidence            98765433

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.96  E-value=2.2e-27  Score=217.12  Aligned_cols=276  Identities=14%  Similarity=0.137  Sum_probs=205.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425            9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE-RKNRPKLTIHILCQLFFSALIGLTLTQ   87 (366)
Q Consensus         9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (366)
                      ..++.++++++|+...+..|...++ .++.  .+++...+.++++++...+. ++.++..+++.+......++.+ ..++
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   77 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVAN-MVYF   77 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHH-HHHH
Confidence            3578899999999999999976655 4443  46677777777777765432 2333333444555555555555 9999


Q ss_pred             HHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccc
Q 041425           88 YFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNY  167 (366)
Q Consensus        88 ~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  167 (366)
                      .++++++++.+++.++++.++.|+++.+++++++|||+++++      ++|+.+++.|+.++.. ++. .          
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~-~~~-~----------  139 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL-SRF-A----------  139 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc-ccc-c----------
Confidence            999999999999999999999999999999999999999999      9999999999998852 111 0          


Q ss_pred             cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH-HHHHHHHh-cCCCcc
Q 041425          168 NVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQS-AILSLIIE-RNLPGW  245 (366)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~  245 (366)
                                     .....|+.++++++++|++|.+..|+..++.++ ..........+.+.. .++..... .+...+
T Consensus       140 ---------------~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (281)
T TIGR03340       140 ---------------QHRRKAYAWALAAALGTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFLLLYLKRHGRSM  203 (281)
T ss_pred             ---------------ccchhHHHHHHHHHHHHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence                           011467788999999999999999887554332 211111222222221 22222211 011111


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425          246 VLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI  323 (366)
Q Consensus       246 ~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l  323 (366)
                      . ..+..++..++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+++
T Consensus       204 ~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       204 F-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            1 1223456677888888999999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.96  E-value=2.5e-27  Score=217.15  Aligned_cols=301  Identities=18%  Similarity=0.245  Sum_probs=239.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCCHHHHHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERK-NRPKLTIHILCQLFFSALIGL   83 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~   83 (366)
                      -++.+++.=+.+++-+.+...+....+.|++ |....++.++.-.++..++..+++++ ++.+..++++.+.++.+++. 
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D-   89 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD-   89 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-
Confidence            4566777777888888999999988877777 77778888877777766666554432 23333457777888889999 


Q ss_pred             HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCC
Q 041425           84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLP  163 (366)
Q Consensus        84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  163 (366)
                      +.++++.+.|++|++.+.++++.++..+++++++++++|+|+++.+      ++|+++++.|+.+++..+....+     
T Consensus        90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~~~-----  158 (334)
T PF06027_consen   90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLSGS-----  158 (334)
T ss_pred             HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeecccccc-----
Confidence            9999999999999999999999999999999999999999999999      99999999999998743322111     


Q ss_pred             CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhc-CC
Q 041425          164 ATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIER-NL  242 (366)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~  242 (366)
                                    .+.+.++...|+++++.|+++||++++..++..|+.+ ......+..+++.++..+...+.|. +.
T Consensus       159 --------------~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i  223 (334)
T PF06027_consen  159 --------------DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGI  223 (334)
T ss_pred             --------------cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhh
Confidence                          1123356689999999999999999999999999865 5778888888999998888887665 22


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHh
Q 041425          243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMY  322 (366)
Q Consensus       243 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~  322 (366)
                      ...+++. ..+. .+....++..+-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|.+
T Consensus       224 ~~~~w~~-~~~~-~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~v  301 (334)
T PF06027_consen  224 ESIHWTS-QVIG-LLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFV  301 (334)
T ss_pred             hccCCCh-hhHH-HHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhh
Confidence            2222222 2222 2222333566777788899999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchhhhh
Q 041425          323 ILLWGKSKEIEEF  335 (366)
Q Consensus       323 l~~~~~~~~~~~~  335 (366)
                      +++..+.++.+++
T Consensus       302 vy~~~~~~~~~~~  314 (334)
T PF06027_consen  302 VYNLAESPEEEAR  314 (334)
T ss_pred             eEEccCCcccccc
Confidence            9998766554443

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.95  E-value=2.8e-26  Score=215.40  Aligned_cols=284  Identities=15%  Similarity=0.174  Sum_probs=221.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CHHHHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKL--TIHILCQLFFSALIG   82 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~   82 (366)
                      +.+..++.++--.+-.......|..++. ++ |..++.+|++++.+++..+.... .++.++.  .+++++.++..|+++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3455555555556666678889999987 99 99999999999988765554322 2222333  345788899999999


Q ss_pred             HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCC
Q 041425           83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL  162 (366)
Q Consensus        83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~  162 (366)
                       ...+...+.|+++++++.++++..+.|+++++++++++|||+++++      +.++++++.|+.+.+. + +       
T Consensus       125 -~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~-~-~-------  188 (350)
T PTZ00343        125 -LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV-K-E-------  188 (350)
T ss_pred             -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec-c-c-------
Confidence             5556778899999999999999999999999999999999999999      9999999999999862 1 1       


Q ss_pred             CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC------CchhHHHHHHHHHHHHHHHHHH
Q 041425          163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP------CQYSSTTIISFFGAIQSAILSL  236 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~  236 (366)
                          .               +....|++++++++++|+++++..|+..++.+      ++.....++...+.+.++|+..
T Consensus       189 ----~---------------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~  249 (350)
T PTZ00343        189 ----L---------------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL  249 (350)
T ss_pred             ----c---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence                0               11267999999999999999999999887532      2334555568889999999887


Q ss_pred             HHhcC--CCccc----ccCchhHHHHHHHHHHHHHHHHHHHHH----HHhhcCcceeeeccchhHHHHHHHHHHHcCCcc
Q 041425          237 IIERN--LPGWV----LKGKLETIGVIYCGMVGSGLCYVGMSW----CVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERI  306 (366)
Q Consensus       237 ~~~~~--~~~~~----~~~~~~~~~~l~~g~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~  306 (366)
                      ..|..  ...+.    ......+..+++ .++.+++++.+++.    +++++++...++..+++|+++++++++++||++
T Consensus       250 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~l  328 (350)
T PTZ00343        250 FFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQV  328 (350)
T ss_pred             HHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCC
Confidence            65431  11110    001112233444 34467888888884    999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHhhhhcc
Q 041425          307 YLGSALGSILVIVGMYILLWG  327 (366)
Q Consensus       307 s~~~~iG~~lii~g~~l~~~~  327 (366)
                      |+.+++|+++++.|++++++-
T Consensus       329 t~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        329 TLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             chHhHHHHHHHHHHHHHHhhc
Confidence            999999999999999998764

>TIGR00688 rarD rarD protein

Probab=99.95  E-value=8.6e-26  Score=203.96  Aligned_cols=248  Identities=9%  Similarity=0.059  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCHH-HHHHHHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERK-----NRPKLTIH-ILCQLFFSALI   81 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~-~~~~~~~~g~~   81 (366)
                      ||++++++++++||..+++.|. .++ ++|.+++++|++++.++++++...++++     +.++.+++ .+..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5899999999999999999997 554 9999999999999998887766443321     11112223 34456677777


Q ss_pred             HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCC
Q 041425           82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH  161 (366)
Q Consensus        82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  161 (366)
                      . ..++.++++|++++++++++++.++.|+++++++++++|||+++++      +++++++++|+.++...++       
T Consensus        80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC-------
Confidence            6 8999999999999999999999999999999999999999999999      9999999999998852110       


Q ss_pred             CCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 041425          162 LPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERN  241 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  241 (366)
                                           +. .   .+++.++++|+.|.+..|+..++ +. ....... ........+.... ...
T Consensus       146 ---------------------~~-~---~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~-~~~  196 (256)
T TIGR00688       146 ---------------------SL-P---WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLET-LSLMPVAIYYLLQ-TDF  196 (256)
T ss_pred             ---------------------Cc-h---HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHHH-HHHHHHHHHHHHH-hcc
Confidence                                 00 1   35788999999999999997653 22 2222111 1111111111111 111


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHH
Q 041425          242 LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSV  301 (366)
Q Consensus       242 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~  301 (366)
                      ......++...|..+++.|+. +.++|.++++++++.++++++...|++|+++.+++.++
T Consensus       197 ~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       197 ATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             CcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            111111122367788888875 88999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=190.98  Aligned_cols=284  Identities=20%  Similarity=0.319  Sum_probs=216.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHH
Q 041425            4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGL   83 (366)
Q Consensus         4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   83 (366)
                      ++..++..+.++..+.|+......|...+...++....+.|...+.+...+..........+  ..+.+.+..+.+.+..
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   80 (292)
T COG0697           3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRP--ALRPWLLLLLLALLGL   80 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccc--cccchHHHHHHHHHHH
Confidence            45567888899999999999999998876535666666779988888744433211111111  1122455666666666


Q ss_pred             HHHHHHHHHhccccCchhhhhhccchhHHHHHHhh-hhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCC
Q 041425           84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLAL-PFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL  162 (366)
Q Consensus        84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~  162 (366)
                      ..++.+++.++++++++.++++.++.|+++.++++ +++|||+++.+      +.++.+++.|++++...++...     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~~~-----  149 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGGGG-----  149 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCcch-----
Confidence            99999999999999999999999999999999997 77799999999      9999999999999963221100     


Q ss_pred             CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHH-HHHHHHHHHHHHHHHHHhcC
Q 041425          163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTT-IISFFGAIQSAILSLIIERN  241 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~  241 (366)
                                         .. ...|+.+++.+++++|.+.+..|+.. +.+ +..... ++..  ............ +
T Consensus       150 -------------------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~  204 (292)
T COG0697         150 -------------------IL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLS-G  204 (292)
T ss_pred             -------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhc-c
Confidence                               00 47899999999999999999999987 323 333443 3333  111111111111 1


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425          242 LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM  321 (366)
Q Consensus       242 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~  321 (366)
                      ..  .......+..+.+.|++.+.+++.++++++++.++..++.+.+++|+++.+++++++||+++..+++|+.+++.|+
T Consensus       205 ~~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~  282 (292)
T COG0697         205 FG--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGV  282 (292)
T ss_pred             cc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence            11  1123356888888999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcc
Q 041425          322 YILLWG  327 (366)
Q Consensus       322 ~l~~~~  327 (366)
                      .+...+
T Consensus       283 ~l~~~~  288 (292)
T COG0697         283 LLASLR  288 (292)
T ss_pred             HHHhcc
Confidence            988776

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=176.85  Aligned_cols=283  Identities=11%  Similarity=0.106  Sum_probs=223.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccC-CC--CCCHHHHHHHHH
Q 041425            1 MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKN-RP--KLTIHILCQLFF   77 (366)
Q Consensus         1 m~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~-~~--~~~~~~~~~~~~   77 (366)
                      |+ ++..+|+++.+.+-++||..+...| .++. .++.++...|.+-+.++++.+....++.+ ..  ..+++.+....+
T Consensus         1 ~~-~~~~~Gil~~l~Ay~lwG~lp~y~k-ll~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l   77 (293)
T COG2962           1 MA-KDSRKGILLALLAYLLWGLLPLYFK-LLEP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLAL   77 (293)
T ss_pred             CC-CcccchhHHHHHHHHHHHHHHHHHH-HHcc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHH
Confidence            55 5668999999999999999999999 5665 99999999999999998877765443321 11  124567777777


Q ss_pred             HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc
Q 041425           78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI  157 (366)
Q Consensus        78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~  157 (366)
                      .++.. ..++..|.+|.++...-++++=++..|++.++++++++|||+++.|      ++++.++.+||....+..|+..
T Consensus        78 ~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~lp  150 (293)
T COG2962          78 TALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGSLP  150 (293)
T ss_pred             HHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCCCc
Confidence            78777 9999999999999999999999999999999999999999999999      9999999999999876443322


Q ss_pred             CCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 041425          158 SNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLI  237 (366)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  237 (366)
                                                      ..++.-+++|+.|...-|+..-  + ..+-...-...-....+.+.+.
T Consensus       151 --------------------------------wval~la~sf~~Ygl~RK~~~v--~-a~~g~~lE~l~l~p~al~yl~~  195 (293)
T COG2962         151 --------------------------------WVALALALSFGLYGLLRKKLKV--D-ALTGLTLETLLLLPVALIYLLF  195 (293)
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHhcCC--c-hHHhHHHHHHHHhHHHHHHHHH
Confidence                                            3566678899999988877542  2 2333333333333333333333


Q ss_pred             HhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHH
Q 041425          238 IERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILV  317 (366)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~li  317 (366)
                      .+...+.........+..++..|. .++++..++..+-|+.+-+..+.++|.+|..-.+++.+++||+++..+++..++|
T Consensus       196 l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~I  274 (293)
T COG2962         196 LADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFI  274 (293)
T ss_pred             HhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            333221112134456777777787 5889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcccc
Q 041425          318 IVGMYILLWGKS  329 (366)
Q Consensus       318 i~g~~l~~~~~~  329 (366)
                      .+|++++....-
T Consensus       275 W~aL~l~~~d~l  286 (293)
T COG2962         275 WLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.90  E-value=8.7e-22  Score=167.61  Aligned_cols=274  Identities=14%  Similarity=0.099  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041425            9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQY   88 (366)
Q Consensus         9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (366)
                      .++.++.+...--.-..+.|..... +.+...+.+|..++.+++++++..+    +.+.++++++.+...|+.. ...+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RPw----r~r~~~~~~~~~~~yGvsL-g~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRPW----RRRLSKPQRLALLAYGVSL-GGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhHH----HhccChhhhHHHHHHHHHH-HHHHH
Confidence            5778888888777778888988887 9999999999999999999887432    2356789999999999998 89999


Q ss_pred             HHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccc
Q 041425           89 FLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYN  168 (366)
Q Consensus        89 ~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  168 (366)
                      +||.+++..|.+.+..+.++-|+.++.++-   |   +.++      ...+.+.+.|+.++. ..++..           
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s---R---r~~d------~vwvaLAvlGi~lL~-p~~~~~-----------  142 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS---R---RLRD------FVWVALAVLGIWLLL-PLGQSV-----------  142 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc---c---chhh------HHHHHHHHHHHHhhe-eccCCc-----------
Confidence            999999999999999999999999887653   2   2445      778888999999885 222111           


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 041425          169 VTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLK  248 (366)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  248 (366)
                                   ...+..|..+++.++.+|+.|++..+|..+..+ ...-...-+..++++..|+......    ....
T Consensus       143 -------------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag----~~l~  204 (292)
T COG5006         143 -------------WSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG----PALF  204 (292)
T ss_pred             -------------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc----hhhc
Confidence                         133479999999999999999999999986534 3567778888899999888875322    1112


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          249 GKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       249 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      ++.....-+..+++.+++.|.+-..++++.+....+.+.++||.++.+.+++++||.+|..||.|+++|+.+..-..+..
T Consensus       205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~  284 (292)
T COG5006         205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA  284 (292)
T ss_pred             ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence            33455666778889999999999999999999999999999999999999999999999999999999999877655544


Q ss_pred             cc
Q 041425          329 SK  330 (366)
Q Consensus       329 ~~  330 (366)
                      +|
T Consensus       285 ~~  286 (292)
T COG5006         285 RK  286 (292)
T ss_pred             CC
Confidence            33

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.90  E-value=2.7e-25  Score=189.98  Aligned_cols=292  Identities=13%  Similarity=0.121  Sum_probs=217.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT   84 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   84 (366)
                      +.++|.++..++-++-..+.+..| .++  .+|.+..-.|++.-.++-.|..++.....+  .+.....+++++|+.+ +
T Consensus        35 ~p~~gl~l~~vs~ff~~~~vv~t~-~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~--gp~g~R~~LiLRg~mG-~  108 (346)
T KOG4510|consen   35 KPNLGLLLLTVSYFFNSCMVVSTK-VLE--NDPMELASFRLLVRMLITYPCLIYYMQPVI--GPEGKRKWLILRGFMG-F  108 (346)
T ss_pred             CCccCceehhhHHHHhhHHHhhhh-hhc--cChhHhhhhhhhhehhhhheEEEEEeeeee--cCCCcEEEEEeehhhh-h
Confidence            466888888888444444444444 443  689999999987777777776654333221  1234445678899999 8


Q ss_pred             HHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc-CCCCCC
Q 041425           85 LTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI-SNPHLP  163 (366)
Q Consensus        85 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~-~~~~~~  163 (366)
                      .+..+.|||+.|++.++++++.+++|++|.+++|+++||+.++.+      .++..+.+.||++++-  .+.. +..   
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIvR--PpFlFG~~---  177 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIVR--PPFLFGDT---  177 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEec--CCcccCCC---
Confidence            888999999999999999999999999999999999999999999      9999999999999962  2111 110   


Q ss_pred             CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041425          164 ATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP  243 (366)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  243 (366)
                                +.+..+++.+....|...++.++++-|--.++.|++.|+.+..+ ...+....+.+.........+ . -
T Consensus       178 ----------t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~m-svsyf~~i~lV~s~I~~~~ig-~-~  244 (346)
T KOG4510|consen  178 ----------TEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIM-SVSYFSLITLVVSLIGCASIG-A-V  244 (346)
T ss_pred             ----------ccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEE-EehHHHHHHHHHHHHHHhhcc-c-e
Confidence                      01111122344456778888888888888889999888754333 334444444444443333222 1 1


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425          244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI  323 (366)
Q Consensus       244 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l  323 (366)
                      .++. ...+|+.++.+|+. +++++.+...++++..+..++++.+.+.+++.+++.++|||.|+++.|.|+++++.+.+.
T Consensus       245 ~lP~-cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~  322 (346)
T KOG4510|consen  245 QLPH-CGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVW  322 (346)
T ss_pred             ecCc-cccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHH
Confidence            2221 34678888888985 789999999999999999999999999999999999999999999999999999998877


Q ss_pred             hhccc
Q 041425          324 LLWGK  328 (366)
Q Consensus       324 ~~~~~  328 (366)
                      ...+|
T Consensus       323 ~a~~k  327 (346)
T KOG4510|consen  323 VALKK  327 (346)
T ss_pred             HHHHH
Confidence            66544

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.86  E-value=5.8e-20  Score=168.34  Aligned_cols=278  Identities=16%  Similarity=0.101  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041425            9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQY   88 (366)
Q Consensus         9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (366)
                      +++++++++++||...+..|+..  |.++.++.  |..++.+++..+....+.++  +..++.+...++.|+.. ..++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w-~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFW-ALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHH-Hhhhh
Confidence            68899999999999999999764  57787765  77778777666554433221  12245555566666665 99999


Q ss_pred             HHHHhccccCchhhhhhcc-chhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccc
Q 041425           89 FLLRGLEYTSATFLCAFLN-TVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNY  167 (366)
Q Consensus        89 ~~~~al~~~~~~~~~~i~~-~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  167 (366)
                      +++.+.++++.+.+..+.+ +.++++.+.+.+++||+.+++++.  -.++|+++.++|+.++...+++..          
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~--~~~~g~~l~l~G~~l~~~~~~~~~----------  142 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTL--LGLLALILIIIGVYLTSRSKDKSA----------  142 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHhHheEEecccccc----------
Confidence            9999999999999999988 888999999999999998776411  115678888889888752111100          


Q ss_pred             cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHH----HHHHHHHHHHHHHhcCCC
Q 041425          168 NVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISF----FGAIQSAILSLIIERNLP  243 (366)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~  243 (366)
                                ++.+..+..+|++++++++++|+.|.+..|+..  ++ +.+..+.+..    .+.+...+.   . +. .
T Consensus       143 ----------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~--~~-~~~~~~~~~~g~~~~~~~~~~~~---~-~~-~  204 (290)
T TIGR00776       143 ----------GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG--VD-GLSVLLPQAIGMVIGGIIFNLGH---I-LA-K  204 (290)
T ss_pred             ----------ccccccchhhHHHHHHHHHHHHHHHHHHHHHcC--CC-cceehhHHHHHHHHHHHHHHHHH---h-cc-c
Confidence                      000002336799999999999999999999863  33 4556444433    333333222   1 11 1


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHHHHHHh-hcCcceeeeccchhHHHHHHHHHHHcCCccchhhH----HHHHHHH
Q 041425          244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVK-KRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSA----LGSILVI  318 (366)
Q Consensus       244 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~----iG~~lii  318 (366)
                      ++   .+..++..+..|++ ..+++.+|..+.+ +.+++.++.+.+.+|+.+.+++++++||+.+..++    +|+++++
T Consensus       205 ~~---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi  280 (290)
T TIGR00776       205 PL---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILII  280 (290)
T ss_pred             ch---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHH
Confidence            11   12334444447886 7999999999999 99999999999999999999999999999999999    9999999


Q ss_pred             HHHhhhhcc
Q 041425          319 VGMYILLWG  327 (366)
Q Consensus       319 ~g~~l~~~~  327 (366)
                      .|+.+....
T Consensus       281 ~~~~l~~~~  289 (290)
T TIGR00776       281 IAANILGIG  289 (290)
T ss_pred             HHHHHHhcc
Confidence            999886543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.85  E-value=2.2e-19  Score=165.91  Aligned_cols=266  Identities=14%  Similarity=0.134  Sum_probs=210.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHH
Q 041425           37 HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLL  116 (366)
Q Consensus        37 ~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~ll  116 (366)
                      |..+++.++....++-.+.....+++   +.++..+...+..+++. .++..+.+.|++|.|.+...++....|+.++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~  107 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMIL  107 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Confidence            88889999888887776665433312   23345566677788888 899999999999999999999999999999999


Q ss_pred             hhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHH
Q 041425          117 ALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGC  196 (366)
Q Consensus       117 a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa  196 (366)
                      +.+++|+|.++.+      +.++++..+|+++..+.+.....                  .++....+...|+++.+++.
T Consensus       108 ~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~~~------------------~~~~~~~~~~~G~~ll~~sl  163 (303)
T PF08449_consen  108 GVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSSSS------------------SSNSSSFSSALGIILLLLSL  163 (303)
T ss_pred             HHHhcCccccHHH------HHHHHHHHhhHheeeeccccccc------------------ccccccccchhHHHHHHHHH
Confidence            9999999999999      99999999999998643222111                  11111122234999999999


Q ss_pred             HHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHH--HhcCCCcc--cccCchhHHHHHHHHHHHHHHHHHHH
Q 041425          197 TTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLI--IERNLPGW--VLKGKLETIGVIYCGMVGSGLCYVGM  271 (366)
Q Consensus       197 ~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~~  271 (366)
                      ++.|...+.+++..++++ ++....++...++.+...+....  .++....+  ....+..+..++... +++.+++.+.
T Consensus       164 ~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i  242 (303)
T PF08449_consen  164 LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFI  242 (303)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999988665 56788899999999988888877  32211111  112333444444444 4678899999


Q ss_pred             HHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccch
Q 041425          272 SWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKE  331 (366)
Q Consensus       272 ~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~  331 (366)
                      +..+++.++...+++..++-+++++++++++++++++.+|+|.++++.|..++...|+|+
T Consensus       243 ~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  243 FYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999999999999999999998877665

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.82  E-value=2.8e-19  Score=160.48  Aligned_cols=235  Identities=15%  Similarity=0.158  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425           70 HILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL  149 (366)
Q Consensus        70 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  149 (366)
                      +.....+....+. +++++.++.|+++++++..+++.+++-+||.+++.++..||+++.+      ++++.+++.|++++
T Consensus       157 ~~ak~sl~fc~lW-F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sK------llav~~si~GViiV  229 (416)
T KOG2765|consen  157 QTAKLSLFFCPLW-FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSK------LLAVFVSIAGVIIV  229 (416)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHH------HHHHHHhhccEEEE
Confidence            3444556666777 9999999999999999999999999999999999999999999999      99999999999999


Q ss_pred             hhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchh---HHHHHHHH
Q 041425          150 TLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYS---STTIISFF  226 (366)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~---~~~~~~~~  226 (366)
                      +.++...                    .++....+...|+++++++|+.||+|.++.||-..+..+...   ...+..++
T Consensus       230 t~~~s~~--------------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLf  289 (416)
T KOG2765|consen  230 TMGDSKQ--------------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLF  289 (416)
T ss_pred             Eeccccc--------------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence            7533221                    112224566899999999999999999999998776532222   23344455


Q ss_pred             HHHHHHHHHHHHhc-CCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCc
Q 041425          227 GAIQSAILSLIIER-NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRER  305 (366)
Q Consensus       227 ~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~  305 (366)
                      ..+++.|..++... ..+..+.+.......+++.+++.++++-.+|.++.-..++..++.-+.++...+++.+.++-|.+
T Consensus       290 nllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~  369 (416)
T KOG2765|consen  290 NLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH  369 (416)
T ss_pred             HHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC
Confidence            55566655555433 33455555556777888889999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHhhhhccccch
Q 041425          306 IYLGSALGSILVIVGMYILLWGKSKE  331 (366)
Q Consensus       306 ~s~~~~iG~~lii~g~~l~~~~~~~~  331 (366)
                      +|+.+++|...|++|.+.++......
T Consensus       370 ~S~~~iiGsi~Ifv~Fv~vn~~~~~~  395 (416)
T KOG2765|consen  370 PSALYIIGSIPIFVGFVIVNISSENS  395 (416)
T ss_pred             CCHHHHHHHHHHHHHHhheecccccc
Confidence            99999999999999999988755433

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.80  E-value=6.5e-19  Score=159.75  Aligned_cols=276  Identities=13%  Similarity=0.093  Sum_probs=220.5

Q ss_pred             HHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 041425           23 VNAFLRKIIDR-GLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSAT  100 (366)
Q Consensus        23 ~~~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~  100 (366)
                      .....|+.++. +.+ |..++..+...+.+.++.....+..+..+..++..+..++..|+.. .++..+-+.++.+.+++
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~Vs  110 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVS  110 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchh
Confidence            34467888773 233 8888888888888777776655554443333557788888999998 99999999999999999


Q ss_pred             hhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccccccccccccccc
Q 041425          101 FLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSK  180 (366)
Q Consensus       101 ~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (366)
                      ..+.+..++|++++++++++.+|+.++..      +..++..+.|+.+.+..+             .+            
T Consensus       111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~e-------------~~------------  159 (316)
T KOG1441|consen  111 FYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVTE-------------LS------------  159 (316)
T ss_pred             HHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeecc-------------cc------------
Confidence            99999999999999999999999999999      999999999999986421             11            


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhcc--cCC-CchhHHHHHHHHHHHHHH-HHHHHHhcCCCc--ccccCchhHH
Q 041425          181 KTERWIIGSIFLIAGCTTWSSWFLMQARIGK--RFP-CQYSSTTIISFFGAIQSA-ILSLIIERNLPG--WVLKGKLETI  254 (366)
Q Consensus       181 ~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~--~~~~~~~~~~  254 (366)
                         -...|.+.++++.+..+..+++.+++.+  +++ ++.+...++...+.+.++ |+....+++...  ..........
T Consensus       160 ---fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~  236 (316)
T KOG1441|consen  160 ---FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL  236 (316)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH
Confidence               1289999999999999999999999984  322 578889999999999999 877776553320  0001112233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccchhhh
Q 041425          255 GVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEE  334 (366)
Q Consensus       255 ~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~~~~  334 (366)
                      ..++.. ++....+...+..+.+++|...++.+...-++.+..|+++|+++.|+.+..|+++.++|+++|++.|.+++++
T Consensus       237 ~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  237 ILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            333333 4555667778889999999999999999999999999999999999999999999999999999988766543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.70  E-value=2.3e-14  Score=129.29  Aligned_cols=299  Identities=14%  Similarity=0.130  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHhhhcc----CCCC------CCHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRG---LNHLVIVAYRQSISVVFLAPIVYFRERK----NRPK------LTIHILCQ   74 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~~~l~l~~~~~~~~~~----~~~~------~~~~~~~~   74 (366)
                      .-++.++...+.++......|+....+   +.|...++.--++-.++.....+...|+    ..+.      ..+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            567788888999999999999887654   6677777777777777776666554322    1111      14567778


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcC
Q 041425           75 LFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKG  154 (366)
Q Consensus        75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~  154 (366)
                      +.+.+++. .+.+.++|.++.+.+++..++..++..+.|+++..+++++|+++.|      |.++++.+.|+.++.....
T Consensus        95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen   95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCC
Confidence            88888887 8888899999999999999999999999999999999999999999      9999999999999953222


Q ss_pred             cccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-chhHHHHHHHHHHHHHHH
Q 041425          155 KLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPC-QYSSTTIISFFGAIQSAI  233 (366)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~  233 (366)
                      +..+                 ..+....++...|....+.+++.-+...++-++..|+.+. .........++|.+..+.
T Consensus       168 ~~~~-----------------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l  230 (345)
T KOG2234|consen  168 SPTG-----------------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLL  230 (345)
T ss_pred             CCCC-----------------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            1111                 1112335677899999999999999999999999986443 333344445555555554


Q ss_pred             HHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHH
Q 041425          234 LSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALG  313 (366)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG  313 (366)
                      ..+..+.+...|. .--.+|-...+.-++..+++=.+....+|+.+-..=.....+..+++.+.++.+++-+||....+|
T Consensus       231 ~~~~~d~~~i~~~-gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG  309 (345)
T KOG2234|consen  231 TILLQDGEAINEY-GFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLG  309 (345)
T ss_pred             HHhhccccccccC-CccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHH
Confidence            4444332211111 111233334444444555566667777888888888888889999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccch
Q 041425          314 SILVIVGMYILLWGKSKE  331 (366)
Q Consensus       314 ~~lii~g~~l~~~~~~~~  331 (366)
                      ..+++.++.+|...+.++
T Consensus       310 ~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  310 ALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHHHhhcCCccc
Confidence            999999999999555544

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.68  E-value=2.5e-17  Score=140.54  Aligned_cols=284  Identities=14%  Similarity=0.164  Sum_probs=212.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425            7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL   85 (366)
Q Consensus         7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   85 (366)
                      ++++.+.=+-+++-......+......|++ |...+|+.+..-+++-.+++.+|.+     .-+..|+..++.++.. +-
T Consensus        17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-----~~~~~~~hYilla~~D-VE   90 (336)
T KOG2766|consen   17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-----YIKAKWRHYILLAFVD-VE   90 (336)
T ss_pred             hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-----HHHHHHHHhhheeEEe-ec
Confidence            344444433344444444455555554454 7788899998888888888876542     2235566688888888 88


Q ss_pred             HHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCc
Q 041425           86 TQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPAT  165 (366)
Q Consensus        86 ~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~  165 (366)
                      ++++...|.+|++....+++-.-..+.+.+++|+++|.|.++.+      +.|+.+|+.|++++++.+-. .+.      
T Consensus        91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~sDV~-agd------  157 (336)
T KOG2766|consen   91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVFSDVH-AGD------  157 (336)
T ss_pred             ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEEeeec-ccc------
Confidence            88999999999999999999999999999999999999999999      99999999999999743211 111      


Q ss_pred             cccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 041425          166 NYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGW  245 (366)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  245 (366)
                                   +.+..+..+|+++.+++|-+||+.++..+.+.|+.+ ......+..++|++....-.++...+....
T Consensus       158 -------------~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl  223 (336)
T KOG2766|consen  158 -------------RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFERHHVSTL  223 (336)
T ss_pred             -------------ccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhhccceeeE
Confidence                         112355579999999999999999999999999855 578889999999999998855422222222


Q ss_pred             cccCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425          246 VLKGKLETIGVIYC-GMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYIL  324 (366)
Q Consensus       246 ~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~  324 (366)
                      ++  .  +....++ ..++.++-|.+.-..+|..+++..+.-....-.++.++  ..||-+.+|...+..+.+..|.+++
T Consensus       224 ~w--~--~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY  297 (336)
T KOG2766|consen  224 HW--D--SAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY  297 (336)
T ss_pred             ee--h--HHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence            21  1  2222222 33344455566667788899999999999999999988  6788889999999999999999998


Q ss_pred             hcccc
Q 041425          325 LWGKS  329 (366)
Q Consensus       325 ~~~~~  329 (366)
                      ..+++
T Consensus       298 s~re~  302 (336)
T KOG2766|consen  298 STREK  302 (336)
T ss_pred             ecccc
Confidence            54433

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.66  E-value=3e-15  Score=126.42  Aligned_cols=258  Identities=13%  Similarity=0.103  Sum_probs=200.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHH
Q 041425           37 HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLL  116 (366)
Q Consensus        37 ~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~ll  116 (366)
                      ...++++++..-.++-=.+..++++.+   .+...-..+..++... .++....+.|++|.|-....+-.+..|+-++++
T Consensus        53 alaLVf~qC~~N~vfAkvl~~ir~~~~---~D~t~~~~YaAcs~sY-LlAMVssN~Alq~vpYPTqVlgKScKPIPVMil  128 (337)
T KOG1580|consen   53 ALALVFFQCTANTVFAKVLFLIRKKTE---IDNTPTKMYAACSASY-LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL  128 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhheeeccccc---ccCCcchHHHHHHHHH-HHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence            345566666666655434333333222   2212222334444444 888899999999999999988999999999999


Q ss_pred             hhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHH
Q 041425          117 ALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGC  196 (366)
Q Consensus       117 a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa  196 (366)
                      +.++.+++.++++      ...+++.++|+++.....+.....                     .+.....|.++.+++-
T Consensus       129 GVl~~~KsY~w~k------Y~cVL~IV~GValFmYK~~Kv~g~---------------------e~~t~g~GElLL~lSL  181 (337)
T KOG1580|consen  129 GVLFAHKSYHWRK------YCCVLMIVVGVALFMYKENKVGGA---------------------EDKTFGFGELLLILSL  181 (337)
T ss_pred             ehhhhcccccHHH------HHHHHHHHHHHHHhhccccccCCC---------------------cccccchHHHHHHHHH
Confidence            9999999999999      999999999999986432322211                     1245579999999999


Q ss_pred             HHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhc--CCCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 041425          197 TTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIER--NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSW  273 (366)
Q Consensus       197 ~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  273 (366)
                      ..-+.....+.+..+.+. ...+++++..+++.+.+..-.++.+.  ++..+....|..|+-+..+++ ++++++++.+.
T Consensus       182 ~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~  260 (337)
T KOG1580|consen  182 AMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFK  260 (337)
T ss_pred             HhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHH
Confidence            999999999999887664 45778999999999998887777543  112222334577888888887 79999999999


Q ss_pred             HHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          274 CVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       274 ~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      -+...+|...+++...+-+++++.+.++|+.+++..||+|..+++.|...-..
T Consensus       261 tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  261 TVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             HHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            99999999999999999999999999999999999999999999999876543

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.66  E-value=4.3e-16  Score=119.21  Aligned_cols=135  Identities=18%  Similarity=0.239  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCCHHHHHHHHHHHHHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNR-PKLTIHILCQLFFSALIGLTLT   86 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~   86 (366)
                      ...+++++++++|+...++.|..++. +||...++.|.....+++..+....++... ...+.|.|..+.+.|+.+ .++
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence            46889999999999999999988885 999999999999999988888775554332 234778999999999888 999


Q ss_pred             HHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           87 QYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        87 ~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      +.+||+|++...++.+..+..++|+++.+++++++|||++..+      ++|+++..+|+++++
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999      999999999998874

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.61  E-value=3.3e-14  Score=126.33  Aligned_cols=230  Identities=12%  Similarity=0.116  Sum_probs=171.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhh
Q 041425           68 TIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAV  147 (366)
Q Consensus        68 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  147 (366)
                      ++++..++.+.+++. .+.+.+.++++++++++..+++.++..++|++++++++|+|+++.|      |.++.+.+.|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence            568888999999997 9999999999999999999999999999999999999999999999      999999999999


Q ss_pred             HhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHH
Q 041425          148 LLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFF  226 (366)
Q Consensus       148 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~  226 (366)
                      ++...+....+. +.          ++....+....+...|.++.++++++-++..++.++..|+.+ +......+...+
T Consensus        86 lv~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~  154 (244)
T PF04142_consen   86 LVQLSSSQSSDN-SS----------SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLF  154 (244)
T ss_pred             eeecCCcccccc-cc----------ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            985322211110 00          000011123456689999999999999999999999998754 334444455666


Q ss_pred             HHHHHHHHHHHHhcC-CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCc
Q 041425          227 GAIQSAILSLIIERN-LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRER  305 (366)
Q Consensus       227 ~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~  305 (366)
                      +.+..++.....+.+ ..+...  ..+|-...+.-++..+++=++....+|+.+...=+....+..+.+.++++++|+.+
T Consensus       155 gi~~~~~~~~~~~~~~~~~~g~--f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~  232 (244)
T PF04142_consen  155 GILFNLLALLLSDGSAISESGF--FHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFP  232 (244)
T ss_pred             HHHHHHHHHhcccccccccCCc--hhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            666665554443221 111111  11222223334445556666678889999999999999999999999999999999


Q ss_pred             cchhhHHHHHHH
Q 041425          306 IYLGSALGSILV  317 (366)
Q Consensus       306 ~s~~~~iG~~li  317 (366)
                      +|....+|+.++
T Consensus       233 ~s~~f~lg~~~V  244 (244)
T PF04142_consen  233 PSLSFLLGAALV  244 (244)
T ss_pred             CchHHhhheecC
Confidence            999999998653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.6e-14  Score=126.87  Aligned_cols=265  Identities=13%  Similarity=0.133  Sum_probs=206.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHH
Q 041425           36 NHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFL  115 (366)
Q Consensus        36 ~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~l  115 (366)
                      ++..+.+.+.+.+.+.-...+..++.+  . ..++.+..+...++.+ .+...|.|.|++|.+-....+-.+.-.+-+++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~--~-~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml  125 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKE--L-SGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML  125 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccccc--C-CCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence            466677777766666655444333222  2 2234556667778888 88999999999999999999999999999999


Q ss_pred             HhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHH
Q 041425          116 LALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAG  195 (366)
Q Consensus       116 la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a  195 (366)
                      ++.+++|.|.+..+      .+...+.-.|+.+..+.+.+..                   .++.+.++...|+.+....
T Consensus       126 mg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s~s-------------------~~~~g~~ns~~G~~Ll~~~  180 (327)
T KOG1581|consen  126 MGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNSDS-------------------SSKSGRENSPIGILLLFGY  180 (327)
T ss_pred             HHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCCCC-------------------ccccCCCCchHhHHHHHHH
Confidence            99999999999999      8888888899988865432211                   1122346778999999999


Q ss_pred             HHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCcc--cccCchhHHHHHHHHHHHHHHHHHHHH
Q 041425          196 CTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLPGW--VLKGKLETIGVIYCGMVGSGLCYVGMS  272 (366)
Q Consensus       196 a~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~~~  272 (366)
                      -.+-+..+..++++.+++. ++.+++++..+++++......+..+...+..  .-.++..++-++.... ++++++.+.+
T Consensus       181 L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~  259 (327)
T KOG1581|consen  181 LLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIF  259 (327)
T ss_pred             HHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheeh
Confidence            9999999999999998754 5788999999999998887744322211111  1123345555555555 6789999999


Q ss_pred             HHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425          273 WCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSK  330 (366)
Q Consensus       273 ~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~  330 (366)
                      +-+++.++...+.++.++-++++.++.+.+|.++++.||.|..+++.|+.+-...++|
T Consensus       260 ~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  260 YTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999887655444

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.54  E-value=2.4e-13  Score=104.20  Aligned_cols=136  Identities=15%  Similarity=0.141  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425          188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC  267 (366)
Q Consensus       188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  267 (366)
                      ..++++++++++++..++.|-..++.+ |...++.+.....+.+.......++ .+....-++..|..++..|+ .++++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~gls   80 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHH
Confidence            468999999999999999999888754 5677888888877777776666443 22221124577888888885 78999


Q ss_pred             HHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          268 YVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       268 ~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      ..+|++++|..+++.+.++..+.|+++++++++++||++|..+++|+++|.+|.+++.+
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            99999999999999999999999999999999999999999999999999999887654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.54  E-value=1.8e-14  Score=114.98  Aligned_cols=125  Identities=24%  Similarity=0.392  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 041425           18 FGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYT   97 (366)
Q Consensus        18 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~   97 (366)
                      ++||...++.|+..++ .||...+++|+..+.+ ++++..+.+++...+.+++++......+++....++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4699999999999987 9999999999999998 6666555555444566788888889899886699999999999999


Q ss_pred             CchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           98 SATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        98 ~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      +++.++++.++.|+++.+++++++||++++.+      ++|+.+++.|++++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999      999999999999874

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=7.4e-12  Score=111.60  Aligned_cols=291  Identities=10%  Similarity=0.071  Sum_probs=215.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHH--HHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVA--YRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIG   82 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~--~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   82 (366)
                      +.+.++.++.-.+.--.+.+..|..+.+ ++ |..+..  ++.+...+.+...-..+ --+.++++++..+..+...++-
T Consensus        10 ~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f-~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~~~l~~~~~kk~~P~~~lf   87 (314)
T KOG1444|consen   10 QSSPLLSALFYCLSSILMTVVNKIVLSSYNF-PMGLLLMLLQSLASVLVVLVLKRLG-LVNFRPLDLRTAKKWFPVSLLF   87 (314)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHhc-eeecCCcChHHHHHHccHHHHH
Confidence            3455566666556666677788988775 33 333333  67766666555443221 1234567889999999999987


Q ss_pred             HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCC
Q 041425           83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL  162 (366)
Q Consensus        83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~  162 (366)
                       .++...--.+++|++.+..+++....|+++++....++|.+++...      +.++...++|.......+-        
T Consensus        88 -~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~~d~--------  152 (314)
T KOG1444|consen   88 -VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAFTDL--------  152 (314)
T ss_pred             -HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhccccc--------
Confidence             8899999999999999999999999999999999999999999999      9999999888888753211        


Q ss_pred             CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhc-
Q 041425          163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIER-  240 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-  240 (366)
                                          .-...|..+++...++-+.+.+..|+-.+..+ ......++..+.+...+.....+.++ 
T Consensus       153 --------------------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~  212 (314)
T KOG1444|consen  153 --------------------SFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGEL  212 (314)
T ss_pred             --------------------eecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcch
Confidence                                11146899999999999999999999776432 34667788888888888777776553 


Q ss_pred             CCCccc---ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHH
Q 041425          241 NLPGWV---LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILV  317 (366)
Q Consensus       241 ~~~~~~---~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~li  317 (366)
                      +....+   ......+..+...++ .+..-..+..++.+..++...++++..+...+.+-..++.|++.++...+|..+-
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~lScv-~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~  291 (314)
T KOG1444|consen  213 DALSLNFDNWSDSSVLVVMLLSCV-MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVG  291 (314)
T ss_pred             HHHHhhcccccchhHHHHHHHHHH-HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHH
Confidence            100111   112233445555555 4555555688999999999999999778777877777778888999999999999


Q ss_pred             HHHHhhhhccccchhhh
Q 041425          318 IVGMYILLWGKSKEIEE  334 (366)
Q Consensus       318 i~g~~l~~~~~~~~~~~  334 (366)
                      +.|-++|...+.++++.
T Consensus       292 ~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  292 FFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             hhhhhHHhhhhhhhccC
Confidence            99999998876555444

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.50  E-value=3.7e-12  Score=112.04  Aligned_cols=252  Identities=15%  Similarity=0.139  Sum_probs=183.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHH
Q 041425           37 HLVIVAYRQSISVVFLAPIVYFRERKN---RPKLTIHILC-QLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVI  112 (366)
Q Consensus        37 ~~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~  112 (366)
                      |..++.++.++-.++-.......+++.   +-..+|++.+ ++...|+.+ ++.-.+.+++++|++.+..++..+..++|
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHHH
Confidence            777777777666555544443333222   2245777665 555677777 99999999999999999999999999999


Q ss_pred             HHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHH
Q 041425          113 TFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFL  192 (366)
Q Consensus       113 ~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  192 (366)
                      +.+++.++.-||+++.-      ..-+++...|+.+.++.+.+           +                 ...|..+.
T Consensus       124 IllFs~if~lEk~~w~L------~l~v~lI~~Glflft~KsTq-----------f-----------------~i~Gf~lv  169 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTYKSTQ-----------F-----------------NIEGFFLV  169 (349)
T ss_pred             HHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEecccc-----------e-----------------eehhHHHH
Confidence            99999999999999988      77777888888888643221           1                 15677788


Q ss_pred             HHHHHHHHHHHHHHHHhcccC----CCchhHHHHHHHHHHHHHHHHHHHHhcCCC-----cccccCch-hHHHHHHHHHH
Q 041425          193 IAGCTTWSSWFLMQARIGKRF----PCQYSSTTIISFFGAIQSAILSLIIERNLP-----GWVLKGKL-ETIGVIYCGMV  262 (366)
Q Consensus       193 l~aa~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~l~~g~~  262 (366)
                      .+++++-++--.+.+.+.++.    ++|.+..........+.++|..+..|+...     .+...++. .+..+..++. 
T Consensus       170 ~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-  248 (349)
T KOG1443|consen  170 LAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-  248 (349)
T ss_pred             HHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-
Confidence            777777666555555555443    357778888888888888888888777322     22222222 2222322222 


Q ss_pred             HHHHHHHH---HHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425          263 GSGLCYVG---MSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYIL  324 (366)
Q Consensus       263 ~~~~~~~~---~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~  324 (366)
                      ++.+++.+   -+....+++....++.+...-+-+.+++..+.+|+++...|.|..+.+.|+.++
T Consensus       249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            33333333   345677888999999999999999999999999999999999999999999988

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.38  E-value=1.7e-12  Score=103.58  Aligned_cols=125  Identities=22%  Similarity=0.361  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041425          197 TTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVK  276 (366)
Q Consensus       197 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~  276 (366)
                      ++||.+.+..|+..++.+ +.....++...+.+ ..+.....++..  ....+...+...++.+.+++.+++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            468999999999998855 68899999999998 666666654422  22223456777888888878999999999999


Q ss_pred             hcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhh
Q 041425          277 KRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILL  325 (366)
Q Consensus       277 ~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~  325 (366)
                      +.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.33  E-value=4.5e-11  Score=103.90  Aligned_cols=279  Identities=15%  Similarity=0.119  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-------------CHHHHHHHHHHHHH
Q 041425           22 TVNAFLRKIID---RGLN----HLVIVAYRQSISVVFLAPIVYFRERKNRPKL-------------TIHILCQLFFSALI   81 (366)
Q Consensus        22 ~~~~~~k~~~~---~~~~----~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~   81 (366)
                      ...+++|++-+   +|.+    |+..+..-|+.-.+.++.+.+++.|.+.+..             +.+. ...+..+++
T Consensus        17 ~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal~   95 (372)
T KOG3912|consen   17 FNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPALC   95 (372)
T ss_pred             HHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHHH
Confidence            45566776532   3343    5666665555556667777666655432210             1111 223347788


Q ss_pred             HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCC
Q 041425           82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH  161 (366)
Q Consensus        82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  161 (366)
                      . ..+..+.|.++.+++++..+++.....+|+.+++..+++.+++.+|      |+|+.-...|++++...+-...+   
T Consensus        96 D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~~~~---  165 (372)
T KOG3912|consen   96 D-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVHLVT---  165 (372)
T ss_pred             H-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeeccccc---
Confidence            8 8888999999999999999999999999999999999999999999      99999999999998532111000   


Q ss_pred             CCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhc
Q 041425          162 LPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIER  240 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~  240 (366)
                                     +...+..+...|+++.+++-+.-|+.+++.+|..++++ +|.....+...+|.+.+..++.....
T Consensus       166 ---------------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~y  230 (372)
T KOG3912|consen  166 ---------------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYY  230 (372)
T ss_pred             ---------------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence                           00111245589999999999999999999999888765 67888889999886666655555321


Q ss_pred             -CCC-cccccCc---hhH------------HHHHHHHHHHHH-HHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHc
Q 041425          241 -NLP-GWVLKGK---LET------------IGVIYCGMVGSG-LCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVL  302 (366)
Q Consensus       241 -~~~-~~~~~~~---~~~------------~~~l~~g~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~  302 (366)
                       +.. ....++.   .+|            ..+...|...+. +-++.=....|..+++.-..+-.++..+--+++....
T Consensus       231 i~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~  310 (372)
T KOG3912|consen  231 IPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMG  310 (372)
T ss_pred             eecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHH
Confidence             100 0111110   011            112222222221 1111122346777888888899999999999999999


Q ss_pred             CCccchhhHHHHHHHHHHHhhhhc
Q 041425          303 RERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       303 ~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      .|.....|+.|.++.+.|+++|+-
T Consensus       311 ~E~f~llqilGFliLi~Gi~lY~~  334 (372)
T KOG3912|consen  311 WEYFHLLQILGFLILIMGIILYNQ  334 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999873

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.32  E-value=2.6e-11  Score=109.59  Aligned_cols=134  Identities=16%  Similarity=0.300  Sum_probs=114.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLN--HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIG   82 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   82 (366)
                      .+.+|.+++++++++|+...+..|+..++ .+  +.....+++.++.++++++....++.  +..+.+++...+..++++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            45689999999999999999999988765 66  44555578999999888887654332  233667787788888887


Q ss_pred             HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhh
Q 041425           83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAV  147 (366)
Q Consensus        83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  147 (366)
                      ...++.++++++++.+++.++.+.++.|+++.++++++++|+++..+      +.|..+.+.|+.
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~------~~G~~li~~g~~  260 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ------LIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhcC
Confidence            78999999999999999999999999999999999999999999999      999999998863

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.30  E-value=6.3e-11  Score=102.88  Aligned_cols=265  Identities=11%  Similarity=0.070  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CchhhhhhccchhHHHHHH
Q 041425           38 LVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYT-SATFLCAFLNTVPVITFLL  116 (366)
Q Consensus        38 ~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~~~~i~~~~p~~~~ll  116 (366)
                      ..++|.++++-+.--+++.- +-....++++.+++.....    .++..+.+-++++++- +...-.++.+-.++.++++
T Consensus        34 NLITFaqFlFia~eGlif~s-kf~~~k~kiplk~Y~i~V~----mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~  108 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTS-KFFTVKPKIPLKDYAITVA----MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL  108 (330)
T ss_pred             eehHHHHHHHHHHhceeeec-cccccCCCCchhhhheehh----eeeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence            44555555544443333221 1111224556666554332    2356678888898874 6677788889999999999


Q ss_pred             hhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHH
Q 041425          117 ALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGC  196 (366)
Q Consensus       117 a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa  196 (366)
                      +|++.|+|.+.+|      ..++.+..+|+++.++.+..+.....         +.=++++.+.+...+..|+.+..++-
T Consensus       109 g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~~~---------~~l~~~~~~~~~~~w~iGi~lL~~al  173 (330)
T KOG1583|consen  109 GWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRSKL---------SGLDSGSAQSDFFWWLIGIALLVFAL  173 (330)
T ss_pred             HHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhhhh---------cccccCcccccchHHHHHHHHHHHHH
Confidence            9999999999999      99999999999999865443222100         00112333344567789999999999


Q ss_pred             HHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcC----------CC-----cccccCchhHHHHHHHH
Q 041425          197 TTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERN----------LP-----GWVLKGKLETIGVIYCG  260 (366)
Q Consensus       197 ~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~l~~g  260 (366)
                      +.-|...+.++..-+++. ++.+..+|..+.+    +|..++..++          .+     .....-|..|..++. .
T Consensus       174 ~~sa~mgiyqE~~Y~kyGKh~~EalFytH~Ls----LP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~-n  248 (330)
T KOG1583|consen  174 LLSAYMGIYQETTYQKYGKHWKEALFYTHFLS----LPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF-N  248 (330)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHhc----cchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH-H
Confidence            999999999888877654 5566777777655    4455543321          11     111112344554443 3


Q ss_pred             HHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcc
Q 041425          261 MVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWG  327 (366)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~  327 (366)
                      ++.+..|.--.+....+.++..++++..++-+++.+++.+.|+.+.++.-|+|..++..|.+++.-.
T Consensus       249 ~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~  315 (330)
T KOG1583|consen  249 VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV  315 (330)
T ss_pred             HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555667777888999999999999999999999999999999999999999998887643

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.2e-11  Score=107.01  Aligned_cols=280  Identities=15%  Similarity=0.089  Sum_probs=202.6

Q ss_pred             HHHHHHHhc---CC-ChHHHHHHHHHHHHHHHHHHHHhhhc----cCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041425           25 AFLRKIIDR---GL-NHLVIVAYRQSISVVFLAPIVYFRER----KNRPK--LTIHILCQLFFSALIGLTLTQYFLLRGL   94 (366)
Q Consensus        25 ~~~k~~~~~---~~-~~~~~~~~r~~~~~l~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~al   94 (366)
                      ...|++++.   .. .|...++.+++....+...+-....+    ...++  ++.+..+.+.-..+.- .+...+-++++
T Consensus        45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL  123 (347)
T KOG1442|consen   45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL  123 (347)
T ss_pred             hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence            355666543   02 27788888888887776655432222    11222  3555556666666665 66778888999


Q ss_pred             cccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccccccccc
Q 041425           95 EYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAK  174 (366)
Q Consensus        95 ~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~  174 (366)
                      +|.+++...+=..+..+|+.++.+.++|+|-+...      ..+.++.++|-.+=+    +.++.               
T Consensus       124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGv----dqE~~---------------  178 (347)
T KOG1442|consen  124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGV----DQEGS---------------  178 (347)
T ss_pred             hhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheecc----ccccc---------------
Confidence            99999999999999999999999999999999888      777777777766543    11111               


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCccc--cc-Cc
Q 041425          175 MMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLPGWV--LK-GK  250 (366)
Q Consensus       175 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~-~~  250 (366)
                            .+.-.+.|.++++.++++-|+..+..|+...... .....+.+....+.++..|...+.+.--..+.  .. ..
T Consensus       179 ------~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~  252 (347)
T KOG1442|consen  179 ------TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAI  252 (347)
T ss_pred             ------cCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHH
Confidence                  0123378999999999999999999997654332 35678888999999999998888544111222  22 22


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425          251 LETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSK  330 (366)
Q Consensus       251 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~  330 (366)
                      ..|..+...|+++-.++|. -.+-+|-++|..-++-....-..-.+++..+++|.-+..-|-|-.++++|...|.+.|.+
T Consensus       253 ~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~  331 (347)
T KOG1442|consen  253 KFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEH  331 (347)
T ss_pred             HHHHHHHHHHHHHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHH
Confidence            3455555556654444444 455688899999999999999999999999999999999999999999999999987766


Q ss_pred             hhhhhhh
Q 041425          331 EIEEFDQ  337 (366)
Q Consensus       331 ~~~~~~~  337 (366)
                      +.+++.+
T Consensus       332 em~~~~~  338 (347)
T KOG1442|consen  332 EMRKASA  338 (347)
T ss_pred             HHHhhcc
Confidence            6555433

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.23  E-value=3.9e-09  Score=93.76  Aligned_cols=248  Identities=14%  Similarity=0.095  Sum_probs=173.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhc-cchhH
Q 041425           35 LNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLT--IHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFL-NTVPV  111 (366)
Q Consensus        35 ~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~  111 (366)
                      =+|.+-.+--...+.++-+...+ ..++   ..+  .+.+...++.|++. ..++.+++.+.++..++.+.++. .++-+
T Consensus        10 G~~~~Q~lG~t~Gali~alv~~~-~~~p---~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLv   84 (269)
T PF06800_consen   10 GKPANQILGTTIGALIFALVVFL-FRQP---AFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLV   84 (269)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHH-HhCC---CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHH
Confidence            44555555443333333333333 3332   333  37888888999998 99999999999999999999996 58888


Q ss_pred             HHHHHhhhhcccccccccccccccee----hhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHH
Q 041425          112 ITFLLALPFGLEKVNVNGLAGKTKVL----GTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWII  187 (366)
Q Consensus       112 ~~~lla~~~~~e~~~~~~~~~~~~~~----g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (366)
                      .+.+++.++++|--+..+      ++    ++++.++|+.+.+..+.+..                    .+.+.++...
T Consensus        85 g~sl~gv~~fgEW~~~~~------~~~G~~Al~liiiGv~lts~~~~~~~--------------------~~~~~~~~~k  138 (269)
T PF06800_consen   85 GTSLIGVLFFGEWTTTTQ------KIIGFLALVLIIIGVILTSYQDKKSD--------------------KSSSKSNMKK  138 (269)
T ss_pred             HHHHHHHhhcCCCCCcch------HHHHHHHHHHHHHHHHHhcccccccc--------------------ccccccchhh
Confidence            899999999999777666      44    67777888887763221111                    0112355678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425          188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC  267 (366)
Q Consensus       188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  267 (366)
                      |+...+++.+.|..|.+..|...   -++.+..+-+.....+....+..+..++  ..   ....|.. +..|+ .-.++
T Consensus       139 gi~~Ll~stigy~~Y~~~~~~~~---~~~~~~~lPqaiGm~i~a~i~~~~~~~~--~~---~k~~~~n-il~G~-~w~ig  208 (269)
T PF06800_consen  139 GILALLISTIGYWIYSVIPKAFH---VSGWSAFLPQAIGMLIGAFIFNLFSKKP--FF---EKKSWKN-ILTGL-IWGIG  208 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC---CChhHhHHHHHHHHHHHHHHHhhccccc--cc---ccchHHh-hHHHH-HHHHH
Confidence            99999999999999999977733   2356666655554444444444432111  11   1122333 33454 46789


Q ss_pred             HHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchh----hHHHHHHHHHHHhh
Q 041425          268 YVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLG----SALGSILVIVGMYI  323 (366)
Q Consensus       268 ~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~----~~iG~~lii~g~~l  323 (366)
                      .+++..+.++.+.+..=.+..+.++++.+.+.+++||+=+..    .++|.+++++|.++
T Consensus       209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999987655    44688888888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.23  E-value=3.7e-10  Score=97.83  Aligned_cols=259  Identities=12%  Similarity=0.103  Sum_probs=192.1

Q ss_pred             CCCh--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhH
Q 041425           34 GLNH--LVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPV  111 (366)
Q Consensus        34 ~~~~--~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~  111 (366)
                      |+.|  +.+++.++++-..+.+...... +.+++..+||.+   ..++.+. .....+.+-++.|++-..-.++..+--+
T Consensus        70 gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rtY---~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKli  144 (367)
T KOG1582|consen   70 GFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRTY---VILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLI  144 (367)
T ss_pred             cCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhHh---hhhHhhh-hhccccCcCccccccCcHHHHHHhhhhh
Confidence            5665  3455666554444433332211 112223345444   4455555 6677888889999998888888888888


Q ss_pred             HHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHH
Q 041425          112 ITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIF  191 (366)
Q Consensus       112 ~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  191 (366)
                      -+.+.+.++-+.|.++.+      ..+..+..+|.++.++.+.+....         .+               ..|+.+
T Consensus       145 PVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~~sPN---------F~---------------~~Gv~m  194 (367)
T KOG1582|consen  145 PVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQTSPN---------FN---------------LIGVMM  194 (367)
T ss_pred             hhhheeeeeccccccHHH------HHHHHHHHHHHHhhhhcccccCCC---------cc---------------eeeHHH
Confidence            889999999999999999      999999999999998765443322         11               689999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cCchhHHHHHHHHHHHHHHH
Q 041425          192 LIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLPGWVL---KGKLETIGVIYCGMVGSGLC  267 (366)
Q Consensus       192 ~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~g~~~~~~~  267 (366)
                      .-.|-++-|.-.-.+++..+.++ +...+.++....|...++......+.-+..|+.   ++-..+...++.++ .+.++
T Consensus       195 IsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG  273 (367)
T KOG1582|consen  195 ISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLG  273 (367)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhh
Confidence            88899999998889999888665 345677788888888888877776554445542   22223444444444 56788


Q ss_pred             HHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          268 YVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       268 ~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      ......-++..++..+..+...+-.+++++++++|..++|.+..-|..+++.|+++-...|
T Consensus       274 ~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  274 IVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            8888888999999999999999999999999999999999999999999999999877766

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.20  E-value=2.6e-11  Score=95.17  Aligned_cols=103  Identities=24%  Similarity=0.388  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhh
Q 041425           42 AYRQSISVVFLAPIVYFRERKN--RPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALP  119 (366)
Q Consensus        42 ~~r~~~~~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~  119 (366)
                      .+|+..+.+++..+...+++.+  .+..+++.+.+....|+++...++.++++|+++.+ +.++++.+++|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5789999998888877654321  12223455667777788885699999999999999 58889999999999999999


Q ss_pred             hccccccccccccccceehhhhhhhhhhHhhh
Q 041425          120 FGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL  151 (366)
Q Consensus       120 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  151 (366)
                      ++|||+++++      +.++.++++|++++..
T Consensus        81 ~~~er~~~~~------~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPRR------WLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHHH------HHHHHHHHHHHHHHhh
Confidence            9999999999      9999999999999964

>PRK13499 rhamnose-proton symporter; Provisional

Probab=99.15  E-value=2.1e-08  Score=92.58  Aligned_cols=301  Identities=12%  Similarity=0.057  Sum_probs=181.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHH---HHHHhhh-ccCCCCCCHHHHHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAY-RQSISVVFLA---PIVYFRE-RKNRPKLTIHILCQLFFSA   79 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-r~~~~~l~l~---~~~~~~~-~~~~~~~~~~~~~~~~~~g   79 (366)
                      +-..|+++.+++.++||+.++..|+ .+. .+ ++.-.. -.+++.++.-   .....+. -......+.+.+...++.|
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G   80 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKK-WS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG   80 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence            4578999999999999999999997 333 43 221111 1112222211   1111000 0111234667888888899


Q ss_pred             HHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccc---cccccccccceehhhhhhhhhhHhhhhcCc
Q 041425           80 LIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKV---NVNGLAGKTKVLGTVVCVGGAVLLTLYKGK  155 (366)
Q Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~  155 (366)
                      ++- ..++..++.++++...+.+..+ ..++-+...++..++++|=.   +..+  +.-..+|+++.++|+++....+..
T Consensus        81 ~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         81 ALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            998 9999999999999999999877 56999999999999988643   2221  112267888889999998752222


Q ss_pred             ccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHH-------HHHHHhcccCCCchhHHHHHHH---
Q 041425          156 LISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWF-------LMQARIGKRFPCQYSSTTIISF---  225 (366)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~---  225 (366)
                      .++.               ...++.++.+..+|+.+++++.+.++.|.       ...+...+...++......+..   
T Consensus       158 k~~~---------------~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~  222 (345)
T PRK13499        158 KERK---------------MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIM  222 (345)
T ss_pred             cccc---------------cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHH
Confidence            1111               00000224667899999999999999999       4333321111122333333333   


Q ss_pred             HHHHHHH-HHHHH---HhcCCCcccc--cCchhHHHH---HHHHHHHHHHHHHHHHHHHhhcCcceeee---cc-chhHH
Q 041425          226 FGAIQSA-ILSLI---IERNLPGWVL--KGKLETIGV---IYCGMVGSGLCYVGMSWCVKKRGPVFTSA---FS-PLTQI  292 (366)
Q Consensus       226 ~~~i~~~-~~~~~---~~~~~~~~~~--~~~~~~~~~---l~~g~~~~~~~~~~~~~~~~~~~~~~~s~---~~-~~~pi  292 (366)
                      .+.+..- .+...   ..++......  .+...+..-   ..++.+.-.+++.++..+-.+.+......   +. .+..+
T Consensus       223 ~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Vi  302 (345)
T PRK13499        223 GGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVL  302 (345)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHH
Confidence            3333222 22222   1111111111  111112222   12222346678888888888886654443   34 78889


Q ss_pred             HHHHHHHHHcCCccc------hhhHHHHHHHHHHHhhhhcc
Q 041425          293 VVAIFDFSVLRERIY------LGSALGSILVIVGMYILLWG  327 (366)
Q Consensus       293 ~a~~~~~~~~~e~~s------~~~~iG~~lii~g~~l~~~~  327 (366)
                      ++.+.+. ++||.=+      ...++|.+++++|..+....
T Consensus       303 istlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        303 CGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            9999998 5998755      56688999999998887554

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.15  E-value=1e-09  Score=101.03  Aligned_cols=136  Identities=11%  Similarity=0.052  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHH
Q 041425            7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLT   86 (366)
Q Consensus         7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   86 (366)
                      ..|.++.++++++|+...++.|+..++ .++..... -..++.+++.++......  ....++..+...+..|++...++
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999988765 78877654 445666666666554322  12235566666678888888999


Q ss_pred             HHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhh
Q 041425           87 QYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLY  152 (366)
Q Consensus        87 ~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~  152 (366)
                      +.+|++++++.+++.++++.+++|+++.++++++++|+++..+      ++|..+.+.|++.....
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999      99999999999998643

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.13  E-value=7e-10  Score=93.47  Aligned_cols=276  Identities=14%  Similarity=0.168  Sum_probs=193.0

Q ss_pred             HHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhh
Q 041425           25 AFLRKIIDR-GLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFL  102 (366)
Q Consensus        25 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~  102 (366)
                      +-.|+.++. |++ -+.+++.+.+...+-+..+-..+.    -+.+.++.+..+...++. +...+.--.+++|++.+..
T Consensus        23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~----~~fR~t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiY   97 (309)
T COG5070          23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRL----VEFRLTKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIY   97 (309)
T ss_pred             HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhH----hheehhhhhhhcCHHHHH-HHHHHhcccceeeeeeeHH
Confidence            345655543 333 344555555544444333322111    112244555556666666 6677778889999999999


Q ss_pred             hhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccccccccccccccccc
Q 041425          103 CAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKT  182 (366)
Q Consensus       103 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (366)
                      +++.+++.+.++.....++|.|++-..      ..+-++.++.-+...+.+.+...                     -..
T Consensus        98 TiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q~~~---------------------~~~  150 (309)
T COG5070          98 TIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQASA---------------------FKA  150 (309)
T ss_pred             HHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhhHHH---------------------HHh
Confidence            999999999999999999999999999      88887777766665432211110                     011


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcC-CCccccc-CchhHHHHHHH
Q 041425          183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERN-LPGWVLK-GKLETIGVIYC  259 (366)
Q Consensus       183 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~~  259 (366)
                      +....|.+++...++.-+.+....|+-.+-.. ......+|....+.-++..+.++.|+. .....-. +......+...
T Consensus       151 ~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~IS  230 (309)
T COG5070         151 QILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFIS  230 (309)
T ss_pred             cccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHH
Confidence            34457889999999999999999888655211 236678899999988888888887652 1111111 22344556666


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccchhh
Q 041425          260 GMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIE  333 (366)
Q Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~~~  333 (366)
                      |+ +++..-.+-.|+++-.+.+..++++.++-.-..+-|.++|+|+.+...+....+-..+..+|...+.++++
T Consensus       231 gl-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q  303 (309)
T COG5070         231 GL-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ  303 (309)
T ss_pred             HH-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66 55555666889999999999999999999999999999999999999999988888777777776554433

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.12  E-value=9.4e-10  Score=91.12  Aligned_cols=138  Identities=16%  Similarity=0.132  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc------CCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccc--------c-Cchh
Q 041425          188 GSIFLIAGCTTWSSWFLMQARIGKR------FPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVL--------K-GKLE  252 (366)
Q Consensus       188 G~~~~l~aa~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~-~~~~  252 (366)
                      |.++++.+.++.|++.+..|+..++      ..++.....+....+.+.+.+...+.|........        . ++..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5689999999999999999998776      23678899999999999999998887653211110        0 1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          253 TIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       253 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      +..++..|+ .....+...+..+++.+|...++...++.+...+++++++||++|..+++|+++.++|.++|++
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            444455554 5667888899999999999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.09  E-value=4.2e-10  Score=93.05  Aligned_cols=219  Identities=12%  Similarity=0.044  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc
Q 041425           78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI  157 (366)
Q Consensus        78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~  157 (366)
                      ..++. .+.++.|..|++..+++.++.+....-.|+.+++++++|+|+.-.+      +++.++++.|++++.+.+... 
T Consensus        59 F~i~W-t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~DN~~-  130 (290)
T KOG4314|consen   59 FSIFW-TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYADNEH-  130 (290)
T ss_pred             eEEEE-ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEeccchh-
Confidence            34555 7888999999999999999999999999999999999999999999      999999999999997432221 


Q ss_pred             CCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CchhHHHHHHHHHHHHH-HHH
Q 041425          158 SNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP--CQYSSTTIISFFGAIQS-AIL  234 (366)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~-~~~  234 (366)
                                               .+.+.|+.+++.+++..|+|-+.-|+....-+  +..+...-..++-.+.. .|.
T Consensus       131 -------------------------a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~  185 (290)
T KOG4314|consen  131 -------------------------ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPA  185 (290)
T ss_pred             -------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhH
Confidence                                     33489999999999999999999999876422  22222222222222221 111


Q ss_pred             HHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHH
Q 041425          235 SLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGS  314 (366)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~  314 (366)
                      .+......+.|..-....|..+...+.+ +..-..+.+.++....|...++-+.....--..++.++-+-..+.....|.
T Consensus       186 lIL~~T~VE~~qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T  264 (290)
T KOG4314|consen  186 LILAFTGVEHLQSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAAT  264 (290)
T ss_pred             HHHHHhchHHHHHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHH
Confidence            1111112223321122347776665554 333445577888888898999988888888899997665656788999999


Q ss_pred             HHHHHHHhhhhccccc
Q 041425          315 ILVIVGMYILLWGKSK  330 (366)
Q Consensus       315 ~lii~g~~l~~~~~~~  330 (366)
                      .+|+.|.++....+.+
T Consensus       265 ~iI~i~FiLiiiP~d~  280 (290)
T KOG4314|consen  265 CIICIGFILIIIPEDK  280 (290)
T ss_pred             HHHHHhHHheecccch
Confidence            9999998887765443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.08  E-value=3e-09  Score=97.36  Aligned_cols=134  Identities=13%  Similarity=0.169  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHH
Q 041425          189 SIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCY  268 (366)
Q Consensus       189 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~  268 (366)
                      ..+.++++++||...+..|+..++.+ +  ...+....+++.+.|+...... ...|...+ ..++..+..+.+.....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence            46889999999999999998877622 2  3455556666666666654211 12333222 334444444555678899


Q ss_pred             HHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcc
Q 041425          269 VGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWG  327 (366)
Q Consensus       269 ~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~  327 (366)
                      .++++++++.+++.++++.+++|+++.+++++++||+++..+++|+++++.|+++...+
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.07  E-value=2.5e-09  Score=98.37  Aligned_cols=138  Identities=16%  Similarity=0.102  Sum_probs=114.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL   85 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   85 (366)
                      ...|.++.++++++|+...+..|+..+  -++....++++.++.+++.++............+.+.+......++++..+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999997643  234556778888888887776654322211123567788888889988789


Q ss_pred             HHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425           86 TQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL  151 (366)
Q Consensus        86 ~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  151 (366)
                      ++.+|++++++.+++.++++.++.|++++++++++++|+++..+      ++|..+.+.|+.+...
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~------iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE------WLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999      9999999999999853

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.06  E-value=2.2e-09  Score=99.00  Aligned_cols=139  Identities=17%  Similarity=0.168  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccCchhHHHHHHHHH
Q 041425          184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV--LKGKLETIGVIYCGM  261 (366)
Q Consensus       184 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~  261 (366)
                      +...|++++++++++|+...+..|.. .+.+ +....+++..++.+.+.++.....+ .....  ..+...+. ....+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKIF-MLAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHHH-HHHHHH
Confidence            44789999999999999999999875 4444 7899999999998877776654321 11100  01112232 233555


Q ss_pred             HHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          262 VGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      +...+.+.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999887653

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.06  E-value=8.1e-09  Score=94.64  Aligned_cols=283  Identities=17%  Similarity=0.185  Sum_probs=157.2

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHH
Q 041425            1 MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHI-LCQLFFSA   79 (366)
Q Consensus         1 m~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~~g   79 (366)
                      || ++...|++++++++++-+....+-|+...+ .+.   .-.|               .++    ..++. ..+..+.|
T Consensus         1 ~~-~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~---------------~~~----~~~~~l~~~~W~~G   56 (300)
T PF05653_consen    1 MN-TDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR---------------AGS----GGRSYLRRPLWWIG   56 (300)
T ss_pred             CC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc---------------ccc----hhhHHHhhHHHHHH
Confidence            44 456789999999999999999888877543 111   0001               000    00111 12334455


Q ss_pred             HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCC
Q 041425           80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISN  159 (366)
Q Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~  159 (366)
                      .+...++..+.+.|+.+.|.+..+++....-++.++++..++|||+++++      +.|+.+++.|..++....+...+.
T Consensus        57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~~~~~~~  130 (300)
T PF05653_consen   57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFAPKEEPI  130 (300)
T ss_pred             HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeCCCCCCc
Confidence            55557788899999999999999999999999999999999999999999      999999999999876433221111


Q ss_pred             CCCCCccccccccccccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH---HH
Q 041425          160 PHLPATNYNVTSHAKMMISS-KKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAI---LS  235 (366)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~  235 (366)
                      .+            ..+-.+ -.+... ........ .+...+.....+|..++ + ...........++.....   +.
T Consensus       131 ~t------------~~~l~~~~~~~~f-l~y~~~~~-~~~~~L~~~~~~r~g~~-~-i~vyi~i~sl~Gs~tvl~~K~i~  194 (300)
T PF05653_consen  131 HT------------LDELIALLSQPGF-LVYFILVL-VLILILIFFIKPRYGRR-N-ILVYISICSLIGSFTVLSAKAIS  194 (300)
T ss_pred             CC------------HHHHHHHhcCcce-ehhHHHHH-HHHHHHHHhhcchhccc-c-eEEEEEEeccccchhhhHHHHHH
Confidence            00            000000 000111 11111111 12222222222232222 1 110000011111111110   11


Q ss_pred             HHHhcCC-CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHH-HHHHHHHHcCCc--cch---
Q 041425          236 LIIERNL-PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIV-VAIFDFSVLRER--IYL---  308 (366)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~-a~~~~~~~~~e~--~s~---  308 (366)
                      ....... .+-....+..|..++.+ +.+........++++++.+++.+.++.+..-.. +++-|.++++|.  .+.   
T Consensus       195 ~~i~~~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~  273 (300)
T PF05653_consen  195 ILIKLTFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI  273 (300)
T ss_pred             HHHHHHhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence            1100000 01111222334333332 334455566678899999999998888776554 455566788875  454   


Q ss_pred             -hhHHHHHHHHHHHhhhhccccc
Q 041425          309 -GSALGSILVIVGMYILLWGKSK  330 (366)
Q Consensus       309 -~~~iG~~lii~g~~l~~~~~~~  330 (366)
                       ....|+.+++.|+++....|.+
T Consensus       274 ~~~~~G~~~ii~GV~lL~~~~~~  296 (300)
T PF05653_consen  274 IGFLCGFLIIIIGVFLLSSSKDK  296 (300)
T ss_pred             HHHHHHHHHHHHhhheeeccCch
Confidence             3456888899999887665543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.04  E-value=2.7e-09  Score=98.32  Aligned_cols=133  Identities=14%  Similarity=0.089  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHH
Q 041425            7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLT   86 (366)
Q Consensus         7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   86 (366)
                      ..|.+++++++++|+...++.|+..++ .++....+   ..+.+++.+...... ......+.+.+..++..++.. .++
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~t-~~~  228 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAAAM-GFG  228 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHHHH-HHH
Confidence            458999999999999999999987655 77765432   223333333322222 112234667777777777655 899


Q ss_pred             HHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425           87 QYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL  151 (366)
Q Consensus        87 ~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  151 (366)
                      +.+|++++++.+++.++.+.++.|++..++++++++|+++..+      ++|.++.+.|+.+...
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~------~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSF------WQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHhHHHHhh
Confidence            9999999999999999999999999999999999999999999      9999999999988753

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.01  E-value=7.9e-09  Score=97.24  Aligned_cols=136  Identities=10%  Similarity=0.089  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHhhhccCC----CCCCHHHHHHHHHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNH-LVIVAYRQSISVVFLAPIVYFRERKNR----PKLTIHILCQLFFSALIG   82 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~   82 (366)
                      .|.+++++++++|+...++.|....+ +++ ...+++...++.+.+.+......+...    ...+... ...+..++..
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t  266 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence            48899999999999999999988776 655 455666666666555444443332111    1122222 2233445554


Q ss_pred             HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhh
Q 041425           83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLY  152 (366)
Q Consensus        83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~  152 (366)
                       .+++.+|++++++.+++.++++.++.|++++++++++++|++++.+      ++|.++.+.|+.++...
T Consensus       267 -~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        267 -SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWG  329 (358)
T ss_pred             -HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhh
Confidence             7789999999999999999999999999999999999999999999      99999999999998643

>TIGR00803 nst UDP-galactose transporter

Probab=98.97  E-value=3.4e-09  Score=93.53  Aligned_cols=216  Identities=13%  Similarity=0.081  Sum_probs=133.5

Q ss_pred             CchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCC--CCCCccccccccccc
Q 041425           98 SATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNP--HLPATNYNVTSHAKM  175 (366)
Q Consensus        98 ~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~--~~~~~~~~~~~~~~~  175 (366)
                      +.+....+.+..++++++..+...++|.+..+      +++..+...|++...+.+.+.....  ....+..+.+   ..
T Consensus         3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~---~~   73 (222)
T TIGR00803         3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMV---QS   73 (222)
T ss_pred             cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecC---CC
Confidence            34556677889999999999999999999888      9999999999886543221110000  0000000000   00


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhH-HHHHHHHHHHHHHHHHHHHhcC-CCcccccCchhH
Q 041425          176 MISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSS-TTIISFFGAIQSAILSLIIERN-LPGWVLKGKLET  253 (366)
Q Consensus       176 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~  253 (366)
                      ........+...|....+.+.++-+...+++++..|+.+..... .....+++.+.........+.+ ...+..  ...+
T Consensus        74 ~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  151 (222)
T TIGR00803        74 SAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF--FIGY  151 (222)
T ss_pred             CccccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCc--ccCC
Confidence            00001123557788888888888888888998877654321111 1122222222111111111111 011110  0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425          254 IGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYIL  324 (366)
Q Consensus       254 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~  324 (366)
                      ....+.-++..+++..+..+.+|+.++...+....++++++.++++++|||+++..+++|+.+++.|+++|
T Consensus       152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       152 PTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             chHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            12222223456678888999999999999999999999999999999999999999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00688 rarD rarD protein

Probab=98.96  E-value=8.6e-09  Score=93.02  Aligned_cols=137  Identities=12%  Similarity=0.135  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCC---CcccccCchh-HHHHHHHHHH
Q 041425          187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL---PGWVLKGKLE-TIGVIYCGMV  262 (366)
Q Consensus       187 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~~l~~g~~  262 (366)
                      +|..+.++++++|+...+..|.. .+. ++.+..+++..++.+.+.+......+..   ..+....... +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            47899999999999999999984 344 4689999999999888776654432110   0111111122 3345555553


Q ss_pred             HHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          263 GSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                       ..+.+.++++++++.++..++.+.++.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence             678999999999999999999999999999999999999999999999999999999887643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.89  E-value=3.7e-08  Score=78.49  Aligned_cols=123  Identities=17%  Similarity=0.164  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHH
Q 041425          187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGL  266 (366)
Q Consensus       187 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  266 (366)
                      .|.++.+.+.++-+...+..|+-.++.++ ...... .    . .......           .   ....+++|+++.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~~-----------~---p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAFG-----------L---ALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHHh-----------c---cHHHHHHHHHHHHH
Confidence            36788899999999999999998876543 111110 0    0 0000000           0   11256778889999


Q ss_pred             HHHHHHHHHhhcCcceeeeccchhHHHHHHHHHH--HcCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425          267 CYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFS--VLRERIYLGSALGSILVIVGMYILLWGKSK  330 (366)
Q Consensus       267 ~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~--~~~e~~s~~~~iG~~lii~g~~l~~~~~~~  330 (366)
                      ++.+|.+++++.+++.+.++....++...+.++.  ++||++|+.+++|+++|++|+++..++++|
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999998888888885  899999999999999999999998765443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.88  E-value=3.9e-08  Score=90.84  Aligned_cols=138  Identities=15%  Similarity=0.182  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCHHHHHHHHHHH
Q 041425            7 WMPVLMMVAVNFGFATVNAFLRKIIDRG--LNHLVIVAYRQSISVVFLAPIVYFRERK-----NRPKLTIHILCQLFFSA   79 (366)
Q Consensus         7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~g   79 (366)
                      ..|.+++++++++|+...++.|+..++.  .+.....++-...+.+.+.......+..     .....+...+..++..|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            4699999999999999999999876541  2223334444444433333222222221     11234667888888999


Q ss_pred             HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ++...+++.+|++++++.+++.++.+..+.|++..++++++++|+++..+      ++|..+.+.|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~------~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ------FLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHh
Confidence            99889999999999999999999999999999999999999999999999      999999999998875

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.81  E-value=2.9e-08  Score=91.86  Aligned_cols=139  Identities=19%  Similarity=0.245  Sum_probs=106.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccCCCC---------CCHH-HHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK---------LTIH-ILCQ   74 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~---------~~~~-~~~~   74 (366)
                      +..|.++++++++.|+...+..|+..++ ++||..+.++.+..+.++++|+....+......         .... .+..
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            4569999999999999999999988761 389999999999999998888876433211000         0001 1111


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           75 LFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      .+..+.......+.+++.+++++++..+++.....|+++.++++++++|+++..+      ++|..+.+.|+.+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHH
Confidence            2222322223344677789999999999999999999999999999999999999      999999999999885

specificities overlap.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.76  E-value=3.9e-09  Score=90.46  Aligned_cols=275  Identities=16%  Similarity=0.108  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ   87 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (366)
                      ..++.+++-++.||+.+...-+.   |-+|.+.+.--.+.+.++-+.+++ . .  .|..+.+.+..-++.|.+. ..++
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~-~-~--~p~~T~~~~iv~~isG~~W-s~GQ   73 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFL-F-V--SPELTLTIFIVGFISGAFW-SFGQ   73 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhe-e-e--cCccchhhHHHHHHhhhHh-hhhh
Confidence            46789999999999998877655   567877776544444444444443 2 2  2455778888888888888 9999


Q ss_pred             HHHHHhccccCchhhhhhc-cchhHHHHHHhhhhcccccccccccccccee----hhhhhhhhhhHhhhhcCcccCCCCC
Q 041425           88 YFLLRGLEYTSATFLCAFL-NTVPVITFLLALPFGLEKVNVNGLAGKTKVL----GTVVCVGGAVLLTLYKGKLISNPHL  162 (366)
Q Consensus        88 ~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~----g~~l~~~Gv~li~~~~~~~~~~~~~  162 (366)
                      ...+.|.++.+++.+.++. .++-+-+.+++.+.++|=.+..+      .+    ++++.++|+.+-++. ++       
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~------~IlG~iAliliviG~~lTs~~-~~-------  139 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ------IILGFIALILIVIGIYLTSKQ-DR-------  139 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh------HHHHHHHHHHHHHhheEeeee-cc-------
Confidence            9999999999999999995 58888899999999999666555      32    333444444444321 11       


Q ss_pred             CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 041425          163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL  242 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  242 (366)
                                  ++....+.++.-+|+...+.+.+.|-.|.+..+...-   +..+....+.....+....+....+   
T Consensus       140 ------------~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v---~g~saiLPqAiGMv~~ali~~~~~~---  201 (288)
T COG4975         140 ------------NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDV---DGLSAILPQAIGMVIGALILGFFKM---  201 (288)
T ss_pred             ------------ccccccChHhhhhheeeeeeeccceeeeEeeeccccc---cchhhhhHHHHHHHHHHHHHhhccc---
Confidence                        1111222456778999999999999999988877552   2233444443333333333333211   


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhH----HHHHHHH
Q 041425          243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSA----LGSILVI  318 (366)
Q Consensus       243 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~----iG~~lii  318 (366)
                       ...  .....+.-+.-|+ .-++++..+..+-++.+....=.++.+..+++.+-+.++++|+=|..++    +|.++++
T Consensus       202 -~~~--~~K~t~~nii~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiiliv  277 (288)
T COG4975         202 -EKR--FNKYTWLNIIPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIV  277 (288)
T ss_pred             -ccc--hHHHHHHHHhhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHH
Confidence             111  1122333344455 4678999999999999998888888999999999999999999887665    6888888


Q ss_pred             HHHhhhhc
Q 041425          319 VGMYILLW  326 (366)
Q Consensus       319 ~g~~l~~~  326 (366)
                      +|..+...
T Consensus       278 vgai~lg~  285 (288)
T COG4975         278 VGAILLGI  285 (288)
T ss_pred             HHhhhhhe
Confidence            88776544

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.74  E-value=4.5e-08  Score=76.71  Aligned_cols=108  Identities=19%  Similarity=0.339  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHH
Q 041425          222 IISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSV  301 (366)
Q Consensus       222 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~  301 (366)
                      ++..++.+..........+..+.+.......+...+..|.+....++.++.++.++.++ .++.+..++|+++.++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            44555666666555553221111111112445556666776666899999999999994 88899999999999999999


Q ss_pred             cCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425          302 LRERIYLGSALGSILVIVGMYILLWGKSK  330 (366)
Q Consensus       302 ~~e~~s~~~~iG~~lii~g~~l~~~~~~~  330 (366)
                      ++|+++..+++|.+++++|+++..+.+..
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999998876543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.74  E-value=2.2e-07  Score=76.79  Aligned_cols=133  Identities=21%  Similarity=0.326  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccCCCC----C-------CHHH
Q 041425            9 PVLMMVAVNFGFATVNAFLRKIIDR------GLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK----L-------TIHI   71 (366)
Q Consensus         9 g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~----~-------~~~~   71 (366)
                      |.++++.+.++.+...++.|+..++      +.++.++..+....+.+++++.....++....+    .       ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5788999999999999999988765      689999999999999999999887665433100    0       2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhH
Q 041425           72 LCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVL  148 (366)
Q Consensus        72 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  148 (366)
                      +..++..|++. ...+.+.+..++++++...++......+.+.++++++++|+++..+      +.|+.+++.|+++
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence            56666777777 8999999999999999999999999999999999999999999999      9999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.67  E-value=2.3e-07  Score=85.18  Aligned_cols=128  Identities=13%  Similarity=0.167  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Q 041425            7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQS----ISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIG   82 (366)
Q Consensus         7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   82 (366)
                      ++|+++.+++++.++......|..   +.||...++....    .+.+++.++   +  +.++ ...+.....++.|++.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~~~-~~~~~~~~~~~~Gi~~  221 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---I--LAKP-LKKYAILLNILPGLMW  221 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---h--cccc-hHHHHHHHHHHHHHHH
Confidence            789999999999999999999965   3788887655554    333333333   1  1122 2234444556688886


Q ss_pred             HHHHHHHHHHhcc-ccCchhhhhhccchhHHHHHHhhhhccccccccccccccce----ehhhhhhhhhhHhh
Q 041425           83 LTLTQYFLLRGLE-YTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKV----LGTVVCVGGAVLLT  150 (366)
Q Consensus        83 ~~~~~~~~~~al~-~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~li~  150 (366)
                       ..++.+|+.+.+ +.+++.+.++.+..|+...+.+.+++||+.++++      +    +|.++.+.|+.++.
T Consensus       222 -~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~------~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 -GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE------MIAISVGIILIIIAANILG  287 (290)
T ss_pred             -HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce------eehhHHHHHHHHHHHHHHh
Confidence             999999999999 9999999999999999999999999999999999      9    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.66  E-value=4.9e-07  Score=85.28  Aligned_cols=138  Identities=19%  Similarity=0.232  Sum_probs=101.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccCCC--------CCCHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDR------GLNHLVIVAYRQSISVVFLAPIVYFRERKNRP--------KLTIHI   71 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~--------~~~~~~   71 (366)
                      +..|.+++++++++|+...++.|...++      ..++.....+....+.++++|+....+.....        ..+...
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4579999999999999999999988764      25677677777788888888887643221100        000001


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhh
Q 041425           72 LCQLFFSALIGLTLTQYFLL----RGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAV  147 (366)
Q Consensus        72 ~~~~~~~g~~~~~~~~~~~~----~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  147 (366)
                      +...+...+.+ .+.+.+++    .+++++++...++...+.|+++.++++++++|+++..+      ++|..+.+.|+.
T Consensus       272 ~~~~l~~i~~s-~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~------~iG~~lii~Gv~  344 (350)
T PTZ00343        272 KGIIIFKIFFS-GVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG------YLGMAVAILGAL  344 (350)
T ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh------HHHHHHHHHHHH
Confidence            11111122222 44444444    69999999999999999999999999999999999999      999999999998


Q ss_pred             Hhh
Q 041425          148 LLT  150 (366)
Q Consensus       148 li~  150 (366)
                      +-.
T Consensus       345 lYs  347 (350)
T PTZ00343        345 LYS  347 (350)
T ss_pred             HHh
Confidence            764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.61  E-value=7.5e-07  Score=81.39  Aligned_cols=133  Identities=16%  Similarity=0.245  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425            7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVA-YRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL   85 (366)
Q Consensus         7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   85 (366)
                      ..|.++.+.+++.|+...+..|... + .++..... +.+.....+..+...  .... ...+.+.+......|++....
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999776 4 66766666 444322222223222  1111 235678889999999998668


Q ss_pred             HHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           86 TQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        86 ~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ++.++++++++.+++..+.+..+.|++..++++++++|+++..+      +.|..+.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999      999999999999885

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.55  E-value=6.6e-07  Score=69.55  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          260 GMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      ++++..+++.++.+++++.+.+.+-.+.++.++++.++++++|||++|+.+++|.+++++|+++...
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4456778999999999999999999999999999999999999999999999999999999987643

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.52  E-value=1.1e-06  Score=68.43  Aligned_cols=69  Identities=25%  Similarity=0.188  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           76 FFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        76 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ...+++++.+++.++..++++.|.+.+..+.++.++++.+++++++|||+++.+      ++|+.+.+.|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            344446668899999999999999999999889999999999999999999999      999999999999884

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.43  E-value=2.3e-06  Score=75.92  Aligned_cols=140  Identities=14%  Similarity=0.102  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccc-ccCchhHHHHHHHHHHHH
Q 041425          186 IIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV-LKGKLETIGVIYCGMVGS  264 (366)
Q Consensus       186 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~~~  264 (366)
                      ..|+++++.|-+.|+..-.+.|.+... + +..+..++.+++............+....+. ...+..+......+.. -
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll~~~-~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLLEPL-P-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccC-C-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence            589999999999999999999887654 4 5789999999999888887777544222222 2345667766666664 4


Q ss_pred             HHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          265 GLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      ......+.++.++.....++.-++++|.+.+++|.++++|+++..|++..++..+|+....+..
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            5788999999999999999999999999999999999999999999999999999988766543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.40  E-value=3.1e-06  Score=67.50  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425            8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ   87 (366)
Q Consensus         8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (366)
                      +++++++++.++-+..-++.|...++ .+....... . ...+.    ..   .         .....+..|+..+.+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~----~~---~---------~p~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL----AF---G---------LALRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH----HH---h---------ccHHHHHHHHHHHHHHH
Confidence            47889999999999999999988876 443332211 1 00000    00   0         00124667788789999


Q ss_pred             HHHHHhccccCchhhhhhccchhHHHHHHhhh--hccccccccccccccceehhhhhhhhhhHhh
Q 041425           88 YFLLRGLEYTSATFLCAFLNTVPVITFLLALP--FGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        88 ~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      .+|.+++++.|++.+..+.+..+.++.+.++.  +++|++++.+      ++|+.+.++|++++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence            99999999999999999999998888888885  8999999999      999999999999985

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.1e-06  Score=78.80  Aligned_cols=277  Identities=14%  Similarity=0.158  Sum_probs=162.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHH
Q 041425            4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGL   83 (366)
Q Consensus         4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   83 (366)
                      .++.+|.++++.+.++-|....+-|+...+ ...   ...|               ...... .-.+  -+....|.+..
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~r---------------a~~gg~-~yl~--~~~Ww~G~ltm   74 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLR---------------AGEGGY-GYLK--EPLWWAGMLTM   74 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hccc---------------ccCCCc-chhh--hHHHHHHHHHH
Confidence            455678888888888888888888877654 111   1111               111111 1112  24556788888


Q ss_pred             HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCC
Q 041425           84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLP  163 (366)
Q Consensus        84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  163 (366)
                      .++...-|.|+.+.|++..+++-.+.-+..++++..++|||++...      .+|..++++|-.+++..........+  
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~haP~e~~i~t--  146 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIHAPKEQEIES--  146 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEecCccccccc--
Confidence            9999999999999999999999999999999999999999999999      99999999999998742222111100  


Q ss_pred             Ccccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH--------
Q 041425          164 ATNYNVTSHAKMMISSK-KTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAIL--------  234 (366)
Q Consensus       164 ~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------  234 (366)
                              .  .+..+. .+.... .....++  ....+-....+   +++. ......|....+.+-++-.        
T Consensus       147 --------~--~el~~~~~~~~Fl-iy~~~ii--l~~~il~~~~~---p~~g-~tnilvyi~i~s~iGS~tV~svKalg~  209 (335)
T KOG2922|consen  147 --------V--EEVWELATEPGFL-VYVIIII--LIVLILIFFYA---PRYG-QTNILVYIGICSLIGSLTVMSVKALGI  209 (335)
T ss_pred             --------H--HHHHHHhcCccHH-HHHHHHH--HHHHHHheeec---cccc-ccceeehhhHhhhhcceeeeeHHHHHH
Confidence                    0  000000 011111 1111111  11111111222   1211 1223334444443321111        


Q ss_pred             --HHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchh-HHHHHHHHHHHcCCc--cch-
Q 041425          235 --SLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLT-QIVVAIFDFSVLRER--IYL-  308 (366)
Q Consensus       235 --~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-pi~a~~~~~~~~~e~--~s~-  308 (366)
                        -....+. ++.  ..+..|..++.... +...-.--.+++++..+++.++++.|+. ..++++-+.++|+|.  .+. 
T Consensus       210 aiklt~~g~-~ql--~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~  285 (335)
T KOG2922|consen  210 AIKLTFSGN-NQL--FYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDAL  285 (335)
T ss_pred             HHHHHhcCC-ccc--ccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence              1111111 121  22344544444433 3334444568999999999988888764 456666788888875  333 


Q ss_pred             ---hhHHHHHHHHHHHhhhhccccch
Q 041425          309 ---GSALGSILVIVGMYILLWGKSKE  331 (366)
Q Consensus       309 ---~~~iG~~lii~g~~l~~~~~~~~  331 (366)
                         ....|+..++.|+++....|.++
T Consensus       286 ~i~~~~~Gf~ti~~G~flL~~~kd~~  311 (335)
T KOG2922|consen  286 DIAGELCGFVTIFLGIFLLHRTKDME  311 (335)
T ss_pred             HHHHHHHhHHHhhheeeEeeeecccc
Confidence               45678999999999886554444

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.25  E-value=1.4e-05  Score=73.98  Aligned_cols=140  Identities=17%  Similarity=0.115  Sum_probs=113.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CHHHHHHHHHHHHH
Q 041425            4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKL--TIHILCQLFFSALI   81 (366)
Q Consensus         4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~   81 (366)
                      .++.+|-++++++++++|...++-++..++ .++.++..+-.+.+.++..+.....+++...+.  +.+....++..+++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            356799999999999999999999999887 899998888888888888777766666544333  44444444444444


Q ss_pred             HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425           82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL  151 (366)
Q Consensus        82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  151 (366)
                      . +..+.+.-..+++.++....+=.-+..+++.+++.+++++++++..      ++|.++.++|.++...
T Consensus       243 l-f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly------~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  243 L-FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLY------ILAFALIIIGFVVYNL  305 (334)
T ss_pred             H-HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHH------HHHHHHHHHHhheEEc
Confidence            4 6677777888999999888777788999999999999999999999      9999999999998754

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.21  E-value=1.2e-05  Score=69.72  Aligned_cols=137  Identities=14%  Similarity=0.049  Sum_probs=114.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT   84 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   84 (366)
                      -...|..+++.+..+|+...+..|+.-+. .+.-.-+..-+.++.++.+|+-.-.....  -.++.-....+..++++..
T Consensus       145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         145 LDPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcc
Confidence            35689999999999999999999988654 45555566778899999999875332222  1255677777888999989


Q ss_pred             HHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           85 LTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        85 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      +.+.+-..+++..|...-+++.++.|.+.++.++++++|.++..|      |.++...+.+..=.+
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsaG~~  281 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASAGST  281 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999      999998887766443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.08  E-value=1.1e-05  Score=63.24  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCcceeeec-cchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          260 GMVGSGLCYVGMSWCVKKRGPVFTSAF-SPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      .+++.++++.++..++++.+.+.+=.+ ..+..+.+.++++++|||++|+.+++|+.+|++|++......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            344566899999999999998775444 568899999999999999999999999999999999886544

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=97.91  E-value=0.0036  Score=57.36  Aligned_cols=301  Identities=12%  Similarity=0.087  Sum_probs=177.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-hhhccC----CCCCCHHHHHHHHHH
Q 041425            4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVY-FRERKN----RPKLTIHILCQLFFS   78 (366)
Q Consensus         4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~-~~~~~~----~~~~~~~~~~~~~~~   78 (366)
                      ++-..|+++..++.+.-|..++-.|+.-+  .+-...=....+++.++ .|+.. +..-++    ....+...+....+.
T Consensus         3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~   79 (344)
T PF06379_consen    3 SAIILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSATPASTLFWTFLF   79 (344)
T ss_pred             chHHHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence            34568999999999999999999996633  43333223334444443 34332 111111    122345677777888


Q ss_pred             HHHHHHHHHHHHHHhccccCchhh-hhhccchhHHHHHHhhhhcccccc-ccccccccceehhhhhhhhhhHhhhhcCcc
Q 041425           79 ALIGLTLTQYFLLRGLEYTSATFL-CAFLNTVPVITFLLALPFGLEKVN-VNGLAGKTKVLGTVVCVGGAVLLTLYKGKL  156 (366)
Q Consensus        79 g~~~~~~~~~~~~~al~~~~~~~~-~~i~~~~p~~~~lla~~~~~e~~~-~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~  156 (366)
                      |++- ..+...|=.+++|+..+.. ++...+..++..++-.++.++--. ..+.-+.-.++|++++++|+.++...+...
T Consensus        80 G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K  158 (344)
T PF06379_consen   80 GVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK  158 (344)
T ss_pred             HHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence            9998 8899999999999999877 444667777777776665432100 001112233889999999999997433222


Q ss_pred             cCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCCc----hhHHHHHHH
Q 041425          157 ISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKR-------FPCQ----YSSTTIISF  225 (366)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~-------~~~~----~~~~~~~~~  225 (366)
                      +..                ...+..+.+..+|+++++++.++-|.+++-...-..-       ..++    .......+.
T Consensus       159 e~~----------------~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~  222 (344)
T PF06379_consen  159 EKE----------------LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLW  222 (344)
T ss_pred             hhh----------------hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhh
Confidence            211                1112234577899999999999988887766543210       0011    112234455


Q ss_pred             HHHHHHHHHHHHHhc---CCC---cccccCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhcCc----ceeeeccchhHH
Q 041425          226 FGAIQSAILSLIIER---NLP---GWVLKGK---LETIGVIYCGMVGSGLCYVGMSWCVKKRGP----VFTSAFSPLTQI  292 (366)
Q Consensus       226 ~~~i~~~~~~~~~~~---~~~---~~~~~~~---~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~pi  292 (366)
                      .+.+.-+...++...   +..   +.....+   .++...+..|. .-...+++|.++-.+.+.    +--.+.+.+..+
T Consensus       223 GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl  301 (344)
T PF06379_consen  223 GGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKLGASGPFSSWAIHMALIVL  301 (344)
T ss_pred             hHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            566666666655321   221   1111111   12222222333 345677777777777764    334566777888


Q ss_pred             HHHHHHHHHcCC------ccchhhHHHHHHHHHHHhhhhc
Q 041425          293 VVAIFDFSVLRE------RIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       293 ~a~~~~~~~~~e------~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      ++-+++. .++|      ++-...++|+++++.++.++-.
T Consensus       302 ~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  302 FSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             HHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            8888886 5555      3334557898888888776543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.83  E-value=5.8e-05  Score=58.31  Aligned_cols=68  Identities=9%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCcceee-eccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          261 MVGSGLCYVGMSWCVKKRGPVFTS-AFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      +++.++++.++..++++.|.+.+= +...+..+.+.++++++|+|++++.+++|++++++|++..+...
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            345668889999999999976653 44667888999999999999999999999999999999986543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.83  E-value=0.00027  Score=65.43  Aligned_cols=130  Identities=18%  Similarity=0.081  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhcccCC-C--chhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 041425          199 WSSWFLMQARIGKRFP-C--QYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCV  275 (366)
Q Consensus       199 ~a~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~  275 (366)
                      +..+.+.++++.++.. .  +..+++.+.....+...+.......+     ..+...+......++ ...++..+.+.++
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~al   85 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----KSRKIPLKKYAILSF-LFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----CCCcChHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3446677888776432 3  56777888888777776666553311     111223444455555 5678888999999


Q ss_pred             hhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccchhhh
Q 041425          276 KKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEE  334 (366)
Q Consensus       276 ~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~~~~  334 (366)
                      ++++...-.+.....|+.+++++.++++++.+..++.+.+++.+|+.+....+.++.++
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~  144 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS  144 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence            99999999999999999999999999999999999999999999999988765444333

; GO: 0055085 transmembrane transport

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.79  E-value=7e-05  Score=68.84  Aligned_cols=120  Identities=15%  Similarity=0.145  Sum_probs=89.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHH
Q 041425          183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMV  262 (366)
Q Consensus       183 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  262 (366)
                      .+...|..+++.++++.+....++|+...+.+. .....                   .....+......|+    .|.+
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~-------------------~~~~~~~l~~~~W~----~G~~   58 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRA-------------------GSGGRSYLRRPLWW----IGLL   58 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc-------------------cchhhHHHhhHHHH----HHHH
Confidence            345789999999999999999999997765332 00000                   00000000011222    2444


Q ss_pred             HHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          263 GSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      ...++..+...++...|++.++++..+..++..+++..++||+++...++|+.+++.|..+...
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            4556777888999999999999999999999999999999999999999999999999887654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.79  E-value=4.6e-06  Score=72.69  Aligned_cols=137  Identities=12%  Similarity=0.126  Sum_probs=99.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHH
Q 041425          184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVG  263 (366)
Q Consensus       184 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~  263 (366)
                      ....|..+.-++ .++...++..++....  +|.........+-.+...|..+.....  .+.......|  ++.=|+ .
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~--LiLRg~-m  106 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKW--LILRGF-M  106 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEE--EEeehh-h
Confidence            445788888888 8888888888887765  345566666555444444443332211  1121111222  233354 3


Q ss_pred             HHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          264 SGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      +..+..+++|++++.+.+.++++....|+++.+++|++++|+.|.....|..+.+.|++++.+..
T Consensus       107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            45788889999999999999999999999999999999999999999999999999999988754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.79  E-value=0.00027  Score=63.18  Aligned_cols=117  Identities=13%  Similarity=0.067  Sum_probs=88.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT   84 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   84 (366)
                      +..|+++.++++++.+....++.|..   ++++....+-+. ++.++-..++....++   +...+...+-++.|++. .
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~~~~~---~~~~k~~~~nil~G~~w-~  206 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQA-IGMLIGAFIFNLFSKK---PFFEKKSWKNILTGLIW-G  206 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHH-HHHHHHHHHHhhcccc---cccccchHHhhHHHHHH-H
Confidence            45789999999999999999999864   488877666544 3333333322221121   12223444557778887 8


Q ss_pred             HHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccc
Q 041425           85 LTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNG  129 (366)
Q Consensus        85 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~  129 (366)
                      .++.+++.+.+....+.+-.+.++..++..+.+.+++||+-++++
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke  251 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE  251 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence            999999999999999999999999999999999999999988887

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.77  E-value=0.00047  Score=55.73  Aligned_cols=131  Identities=16%  Similarity=0.144  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHH
Q 041425          189 SIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCY  268 (366)
Q Consensus       189 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~  268 (366)
                      .++++.++..-++....+.++.++..++...++..+..+.+.+..+..+.++.  .+.......|+..+  |.+.+++..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l--GG~lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL--GGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc--cHHHHHHHH
Confidence            57889999999999999999998877688899999999999998888886653  22211223444444  444566777


Q ss_pred             HHHHHHHhhcCcceeeecc-chhHHHHHHHHHH-H---cCCccchhhHHHHHHHHHHHhh
Q 041425          269 VGMSWCVKKRGPVFTSAFS-PLTQIVVAIFDFS-V---LRERIYLGSALGSILVIVGMYI  323 (366)
Q Consensus       269 ~~~~~~~~~~~~~~~s~~~-~~~pi~a~~~~~~-~---~~e~~s~~~~iG~~lii~g~~l  323 (366)
                      .+..+.+++.+++....+. .-+.+.+.+++.+ +   -++++++.+++|.+++++|+++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            7788899999987765554 4456667777875 2   3467899999999999999864

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.64  E-value=0.00019  Score=65.85  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=113.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHH-HHHHhhhccCC-----CCCCHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIID---RGLNHLVIVAYRQSISVVFLA-PIVYFRERKNR-----PKLTIHILCQL   75 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~-~~~~~~~~~~~-----~~~~~~~~~~~   75 (366)
                      =++.|.+.++++.+..+...++.|..+.   +.++++.+.....-++..+++ |+....++...     ...+.. ....
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence            3679999999999999999999998883   358999999988888888888 88766554332     122333 3334


Q ss_pred             HHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           76 FFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        76 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ....++. .+.+...|..+.+++|-..++....--.++...+++++++++++.+      .+|..+++.|+.+=.
T Consensus       239 ~~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHH
Confidence            4444777 7778889999999999999999999999999999999999999999      999999999998864

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.59  E-value=0.0009  Score=54.12  Aligned_cols=131  Identities=15%  Similarity=0.186  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425            9 PVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ   87 (366)
Q Consensus         9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (366)
                      .+++++++..+-+....+.....++ .. |..-++..+..+.+.+..+....+++..+..+ +.-.+...-|+++ ...-
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG-~~~V   78 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLG-VFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHH-HHHH
Confidence            3567778888888888888877776 55 99999999999999888887766654333222 2223444578888 8999


Q ss_pred             HHHHHhccccCchhhhhhc-cchhHHHHHHhhh----hccccccccccccccceehhhhhhhhhhH
Q 041425           88 YFLLRGLEYTSATFLCAFL-NTVPVITFLLALP----FGLEKVNVNGLAGKTKVLGTVVCVGGAVL  148 (366)
Q Consensus        88 ~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  148 (366)
                      .+..+.....+++....+. .-+-+...++..+    .-|+++++.+      ++|+.+.++|+.+
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR------ILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH------HHHHHHHHHHHhC
Confidence            9999999999998886664 4566666777775    4588899999      9999999999864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.56  E-value=0.00026  Score=53.64  Aligned_cols=65  Identities=22%  Similarity=0.280  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcc
Q 041425          263 GSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWG  327 (366)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~  327 (366)
                      +..+++.+...++|+.|... .++..-...+.+.+.++++|+|+++..+++|..++++|++..+..
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            45588999999999998654 577888889999999999999999999999999999999987654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.51  E-value=0.0015  Score=50.19  Aligned_cols=63  Identities=13%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhh
Q 041425          263 GSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILL  325 (366)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~  325 (366)
                      ...+++.+...++|+.|... .++...+..+.+.+.++++|||++++.+++|+++++.|++...
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            45689999999999999755 5667778889999999999999999999999999999998764

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.0016  Score=52.70  Aligned_cols=139  Identities=16%  Similarity=0.127  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHH
Q 041425          186 IIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSG  265 (366)
Q Consensus       186 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  265 (366)
                      ....+.++.++++-.+....+.++.+...+|....+..+..+.+++..+.++.++ ...+....+..|+..+. |. ..+
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~G-G~-lGa   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWIG-GL-LGA   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHHc-cc-hhh
Confidence            5678899999999999999999999987788889999999999999988888443 22333223334554332 33 233


Q ss_pred             HHHHHHHHHHhhcCc-ceeeeccchhHHHHHHHHHHHcC----CccchhhHHHHHHHHHHHhhhhcc
Q 041425          266 LCYVGMSWCVKKRGP-VFTSAFSPLTQIVVAIFDFSVLR----ERIYLGSALGSILVIVGMYILLWG  327 (366)
Q Consensus       266 ~~~~~~~~~~~~~~~-~~~s~~~~~~pi~a~~~~~~~~~----e~~s~~~~iG~~lii~g~~l~~~~  327 (366)
                      +--........+.++ ........-+.+.+.+++.+=+.    .+++..+++|++++++|+++..+.
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            333334445556554 34455556667777777765443    468999999999999996555443

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.50  E-value=0.00077  Score=51.85  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425           80 LIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL  149 (366)
Q Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  149 (366)
                      +..+..++++...++++.|.+.+-.+ ...-.+.+.+++++++||++++.+      ++|+.+.+.|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence            34448899999999999999988555 668899999999999999999999      99999999999886

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.45  E-value=0.00045  Score=52.83  Aligned_cols=65  Identities=15%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          262 VGSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      ++..+++.+...++|+.|... .++...+..+.+.++++++|||++|+.+++|+.++++|++..+.
T Consensus        37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            345689999999999999754 56677788999999999999999999999999999999988754

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.39  E-value=0.00078  Score=61.93  Aligned_cols=140  Identities=11%  Similarity=0.198  Sum_probs=112.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCCHHHHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIIDR---GLNHLVIVAYRQSISVVFLAPIVYFRE---RKNRPKLTIHILCQLFFS   78 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~   78 (366)
                      +...|-++++++++++|...++.|+-.++   .+|--.+..+-.++..++++|..++-.   .++..-.+..+...++..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            45789999999999999999999987653   255555555556667777776554432   222222344566677888


Q ss_pred             HHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           79 ALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        79 g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ++++.+++.++|..|.-.+++-.+++-..++....++...++.+.++++..      ++|....++|-+++.
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~------iiGsi~Ifv~Fv~vn  389 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY------IIGSIPIFVGFVIVN  389 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHhhee
Confidence            899999999999999999999999999999988999999999999999999      999999999988885

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.38  E-value=0.00031  Score=55.03  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           78 SALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ..+..+..+++++..++++.|.+.+-.+ .....+.+.+++.++++|++++.+      ++|+.+.++|++.+-
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~  102 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhh
Confidence            3455558899999999999999999666 468999999999999999999999      999999999998884

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.37  E-value=0.00031  Score=54.12  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041425           14 VAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRG   93 (366)
Q Consensus        14 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a   93 (366)
                      ++.+++||.+.++.|+..+. .++..-.. |..-....     ++        .+++...    .=+++ -.+...|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll--------~n~~y~i----pf~lN-q~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL--------LNPKYII----PFLLN-QSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH--------HhHHHHH----HHHHH-HHHHHHHHHH
Confidence            35678999999999988764 54433321 32111111     10        0222222    22334 6667899999


Q ss_pred             ccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425           94 LEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL  149 (366)
Q Consensus        94 l~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  149 (366)
                      +...+.+.+.++ +++.-++|++.++++.+|..++..      ++|+.+.+.|+.+.
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeeee
Confidence            999999999888 589999999999999888889888      99999999998764

Many members are annotated as potential transmembrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.35  E-value=0.00044  Score=53.42  Aligned_cols=67  Identities=16%  Similarity=0.318  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           78 SALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ..+..+..++.++..++++.|.+.+-.+ .....+.+.+++++++||++++.+      ++|+.+.++|++.+-
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~  102 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            3455568889999999999999998666 568899999999999999999999      999999999999984

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.00051  Score=52.04  Aligned_cols=65  Identities=20%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHhccccCchhh-hhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425           79 ALIGLTLTQYFLLRGLEYTSATFL-CAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL  149 (366)
Q Consensus        79 g~~~~~~~~~~~~~al~~~~~~~~-~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  149 (366)
                      .+.++..++.+.-.++++.|.+.+ ++-...-.+.+.+.++++++|+++..+      ++++.+.+.|++.+
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~L  101 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHh
Confidence            344458889999999999999988 445679999999999999999999999      99999999999987

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.23  E-value=0.00078  Score=51.52  Aligned_cols=64  Identities=13%  Similarity=0.081  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425           80 LIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL  149 (366)
Q Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  149 (366)
                      +.++..++++...++++.|.+.+-.+ ...-.+.+.+++++++||++++.+      ++|+.+.+.|++.+
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l  100 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhh
Confidence            44458899999999999999988555 569999999999999999999999      99999999999987

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.00057  Score=59.25  Aligned_cols=132  Identities=15%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425          188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC  267 (366)
Q Consensus       188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  267 (366)
                      ..+++++=++.|+..-....+...+   |.+.+....+.+.+......++.. +  ..+   ...+..-+..|+ .-.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ~lGtT~GALifaiiv~~~~~-p--~~T---~~~~iv~~isG~-~Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGGK---PYQQTLGTTLGALIFAIIVFLFVS-P--ELT---LTIFIVGFISGA-FWSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCCC---hhHhhhhccHHHHHHHHHHheeec-C--ccc---hhhHHHHHHhhh-Hhhhh
Confidence            4578889999999877777665433   456666666555555555555422 1  111   122333333444 46689


Q ss_pred             HHHHHHHHhhcCcceeeeccc-hhHHHHHHHHHHHcCCccchhhHH----HHHHHHHHHhhhhcccc
Q 041425          268 YVGMSWCVKKRGPVFTSAFSP-LTQIVVAIFDFSVLRERIYLGSAL----GSILVIVGMYILLWGKS  329 (366)
Q Consensus       268 ~~~~~~~~~~~~~~~~s~~~~-~~pi~a~~~~~~~~~e~~s~~~~i----G~~lii~g~~l~~~~~~  329 (366)
                      +...+++++..+.+++.++.. .+.+-+.+++.+.|||..+..+.+    ..+++++|+++..++++
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            999999999999999998876 566777889999999999887763    56778889888777654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.96  E-value=0.025  Score=52.70  Aligned_cols=145  Identities=14%  Similarity=0.066  Sum_probs=91.0

Q ss_pred             CchHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHH-HHHHhh--hccCC-----CC
Q 041425            5 GQWMPVLMMVAVNFGFATVN-------AFLRKIIDRGLNHLVIVAYRQS---ISVVFLA-PIVYFR--ERKNR-----PK   66 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~-------~~~k~~~~~~~~~~~~~~~r~~---~~~l~l~-~~~~~~--~~~~~-----~~   66 (366)
                      +..||++.++++.++.+...       +..+...+.|.++.....-.+.   ++..+.- .+..+.  +.+..     ++
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            45799999999999999988       6666555557777665555554   3333322 222221  11211     11


Q ss_pred             CC----HHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhh---hc-cchhHHHHHHhhhhccccccccccccccceeh
Q 041425           67 LT----IHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCA---FL-NTVPVITFLLALPFGLEKVNVNGLAGKTKVLG  138 (366)
Q Consensus        67 ~~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~---i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g  138 (366)
                      .+    ++.....++.|++. ..++.+|..+-...+.+.+..   +. ++.-++..+-+. ++||+-+..+..-+-.++|
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            12    33444447777777 888889999888876655544   54 555566666666 6999887323223334778


Q ss_pred             hhhhhhhhhHhhh
Q 041425          139 TVVCVGGAVLLTL  151 (366)
Q Consensus       139 ~~l~~~Gv~li~~  151 (366)
                      +++.++|..++.+
T Consensus       329 ~vliI~g~~lig~  341 (345)
T PRK13499        329 CVVIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888888864

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.96  E-value=0.0013  Score=49.39  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHhhcCccee-eeccchhHHHHHHHHHHHcCCccchhhHHHHHHH
Q 041425          263 GSGLCYVGMSWCVKKRGPVFT-SAFSPLTQIVVAIFDFSVLRERIYLGSALGSILV  317 (366)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~li  317 (366)
                      +..+++.++..++|+.+.+.+ .+...+..+.+.+.+.++|||++|+.+++|+.+|
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            566888999999999998887 4556689999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.87  E-value=0.0019  Score=57.64  Aligned_cols=78  Identities=14%  Similarity=0.143  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccch
Q 041425          253 TIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKE  331 (366)
Q Consensus       253 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~  331 (366)
                      ...+..=++ ...+...+.+.++++.+|+...++..++.++++++++++++.+++..||++..+.++|+.+........
T Consensus        17 ~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   17 TLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            333333344 366788889999999999999999999999999999999999999999999999999999877654443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.61  E-value=0.011  Score=52.61  Aligned_cols=188  Identities=9%  Similarity=0.004  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041425            9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQY   88 (366)
Q Consensus         9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (366)
                      |+++.+++.+++|+.++-.|.. +. -|++.+-++......+.-+.+..+..   .++    ...+.++-|.+. +.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~----f~p~amlgG~lW-~~gN~   70 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLILG---FPP----FYPWAMLGGALW-ATGNI   70 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCc----ceeHHHhhhhhh-hcCce
Confidence            5788999999999999999944 33 57777776665444444444443322   222    234455666676 89999


Q ss_pred             HHHHhccccCchhhhhhccchhHHH-HHHhhh-hcccccc-----ccccccccceehhhhhhhhhhHhhhhcCcccCCC-
Q 041425           89 FLLRGLEYTSATFLCAFLNTVPVIT-FLLALP-FGLEKVN-----VNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNP-  160 (366)
Q Consensus        89 ~~~~al~~~~~~~~~~i~~~~p~~~-~lla~~-~~~e~~~-----~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~-  160 (366)
                      +-.-.++....+....+-.+.-+.+ -..+++ +++++..     ...      .+|++++++|..+..+-+.+..... 
T Consensus        71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln------~~G~~l~~~~~~~f~fik~~~~~~~~  144 (254)
T PF07857_consen   71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLN------YIGVALVLVSGIIFSFIKSEEKEPKK  144 (254)
T ss_pred             eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHH------HHHHHHHHHHHHheeeecCCCCCccc
Confidence            9999999999999999877644444 444443 3433222     233      5677788888777654333321100 


Q ss_pred             CC----CCcccccccccc----ccccc----cccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 041425          161 HL----PATNYNVTSHAK----MMISS----KKTERWIIGSIFLIAGCTTWSSWFLMQARIGKR  212 (366)
Q Consensus       161 ~~----~~~~~~~~~~~~----~~~~~----~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~  212 (366)
                      ..    ...+...+..++    .+++.    ....+...|..++++++++|+...+=..++.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  145 SSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             cccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence            00    000101111111    01111    112357899999999999999988777777655

The region concerned is approximately 280 residues long.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.36  E-value=0.0045  Score=46.38  Aligned_cols=57  Identities=25%  Similarity=0.226  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhh
Q 041425           79 ALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVV  141 (366)
Q Consensus        79 g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l  141 (366)
                      .+..+..++.++..++++.|.+.+-.+ .....+.+.+++.+++||+++..+      +.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            344558899999999999999999555 569999999999999999999999      888765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.32  E-value=0.012  Score=45.40  Aligned_cols=108  Identities=14%  Similarity=0.055  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 041425          194 AGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSW  273 (366)
Q Consensus       194 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  273 (366)
                      +-++.|+..+-+.||..+..++.... . +.......     ++             ..|-..+  .......+-..|++
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll-------------~n~~y~i--pf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LL-------------LNPKYII--PFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HH-------------HhHHHHH--HHHHHHHHHHHHHH
Confidence            44688999999999988875532222 1 21111111     11             1111222  33335567777899


Q ss_pred             HHhhcCcceeeecc-chhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425          274 CVKKRGPVFTSAFS-PLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI  323 (366)
Q Consensus       274 ~~~~~~~~~~s~~~-~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l  323 (366)
                      .+.+.+.+.+.++. .+.-+++++.++++.+|..+...++|++++++|+.+
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            99999999999985 999999999999888888899999999999999865

Many members are annotated as potential transmembrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.26  E-value=0.059  Score=48.53  Aligned_cols=138  Identities=13%  Similarity=0.169  Sum_probs=110.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhccCCC-----CCCHHHHHHHHHH
Q 041425            5 GQWMPVLMMVAVNFGFATVNAFLRKIID-RGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP-----KLTIHILCQLFFS   78 (366)
Q Consensus         5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~   78 (366)
                      +...|++++....++-|.....=+...+ .++++..+.+.-.+...+.-....+.. ...++     +..++.+..+++.
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHHHH
Confidence            4568999999999988888877666654 368899998888888887766664322 22221     1245667778888


Q ss_pred             HHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           79 ALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        79 g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      ..++ ++++.+.|+-++.-++-.-+.+..+-=+++.+++.+.++.+++..|      |.|+.+.+.|+.+=.
T Consensus       248 s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  248 STCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence            8998 9999999999999888888888889999999999999999999999      999999999988754

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.91  E-value=0.12  Score=42.05  Aligned_cols=137  Identities=11%  Similarity=0.083  Sum_probs=91.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL   85 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   85 (366)
                      ....+++.+.+..+-.....+.-.+.+..=+|..-.+..+..+.+.+..+.+.+.++......++...+...-|+++ +.
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~   81 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AI   81 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hh
Confidence            35677788888888888888877777662359998999999998888888776444332221223334445556666 66


Q ss_pred             HHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhc----cccccccccccccceehhhhhhhhhhHh
Q 041425           86 TQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFG----LEKVNVNGLAGKTKVLGTVVCVGGAVLL  149 (366)
Q Consensus        86 ~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~----~e~~~~~~~~~~~~~~g~~l~~~Gv~li  149 (366)
                      .-...........++....+ ..-+-+...++..+=.    +.+++..+      ++|+++.+.|+.++
T Consensus        82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r------~lgi~L~l~gil~~  144 (150)
T COG3238          82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPR------ILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHH------HHHHHHHHHHHHHh
Confidence            65666666666666655443 5556666666665322    57777788      99999999995554

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=95.64  E-value=0.015  Score=51.75  Aligned_cols=132  Identities=14%  Similarity=0.044  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425          188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC  267 (366)
Q Consensus       188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  267 (366)
                      |.+.+++|+++++-..+=.|+....  |.+....++.....+......++.+  .+.+        .....+|...-+.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~--~p~f--------~p~amlgG~lW~~g   68 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILG--FPPF--------YPWAMLGGALWATG   68 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcC--CCcc--------eeHHHhhhhhhhcC
Confidence            4567889999999988888876544  4443433333333333333333321  1111        11111222234456


Q ss_pred             HHHHHHHHhhcCccee-eeccchhHHHHHHHHHH-HcCCc-----cchhhHHHHHHHHHHHhhhhccccch
Q 041425          268 YVGMSWCVKKRGPVFT-SAFSPLTQIVVAIFDFS-VLRER-----IYLGSALGSILVIVGMYILLWGKSKE  331 (366)
Q Consensus       268 ~~~~~~~~~~~~~~~~-s~~~~~~pi~a~~~~~~-~~~e~-----~s~~~~iG~~lii~g~~l~~~~~~~~  331 (366)
                      ..+-.-.+|+++-... .+....+.+.+...+-+ +||++     -.+..++|++++++|..++..-|.++
T Consensus        69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            6666666777665443 33344466666666543 56543     35678899999999998887655444

The region concerned is approximately 280 residues long.

>TIGR00803 nst UDP-galactose transporter

Probab=95.61  E-value=0.027  Score=49.47  Aligned_cols=64  Identities=13%  Similarity=0.076  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhH
Q 041425           78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVL  148 (366)
Q Consensus        78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  148 (366)
                      ..+.+ .....+....++|.++...+....+.++++.+++.++++|+++..+      +.|+.+.+.|+.+
T Consensus       158 ~~~~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~l  221 (222)
T TIGR00803       158 VGLLN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATFL  221 (222)
T ss_pred             HHHHH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeEe
Confidence            33444 6777889999999999999999999999999999999999999999      9999999888653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.0042  Score=56.17  Aligned_cols=126  Identities=21%  Similarity=0.231  Sum_probs=93.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHH
Q 041425          182 TERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGM  261 (366)
Q Consensus       182 ~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  261 (366)
                      ..++..|..+++.+.+..+...++.|+..++... .                 ..-.++  ...+... .   ..-+.|+
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-~-----------------~~ra~~--gg~~yl~-~---~~Ww~G~   71 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-S-----------------GLRAGE--GGYGYLK-E---PLWWAGM   71 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh-h-----------------cccccC--CCcchhh-h---HHHHHHH
Confidence            4556789999999999999999999887665221 0                 000001  1111111 1   1223477


Q ss_pred             HHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccch
Q 041425          262 VGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKE  331 (366)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~  331 (366)
                      +...++-.+.+.+....+++.+++++.++.++.++++..+++|++++...+|+++.++|.......-.++
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence            7777888888899999999999999999999999999999999999999999999999987766544333

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.16  E-value=0.78  Score=42.47  Aligned_cols=141  Identities=16%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCC---CchhHHHHHHHHHHHHHHHHHHHHhcC-----CCc---ccccCchhHHH
Q 041425          187 IGSIFLIAGCTTWSSWFLMQARIGKRFP---CQYSSTTIISFFGAIQSAILSLIIERN-----LPG---WVLKGKLETIG  255 (366)
Q Consensus       187 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~---~~~~~~~~~~~  255 (366)
                      .=.+..+...+.++......|+..++..   .+.+..+..-..-.+......+..++.     ...   +....+.+...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            3445556666777777777777665432   133444444444444444334433211     011   11111111121


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          256 VIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       256 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      +..=+. ..++-+-+++.+..+.+++...+...+....++++..++++++++..||...++.+.|+.+.....
T Consensus        95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~  166 (345)
T KOG2234|consen   95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS  166 (345)
T ss_pred             HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence            211122 344556688999999999999999999999999999999999999999999999999999988443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.92  E-value=0.42  Score=43.59  Aligned_cols=133  Identities=14%  Similarity=0.075  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHH--HHHHHHHHHHHHHHHHHhcCCCcccccCchhHHH--HHHHHHHH
Q 041425          188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTT--IISFFGAIQSAILSLIIERNLPGWVLKGKLETIG--VIYCGMVG  263 (366)
Q Consensus       188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~~  263 (366)
                      ....++.-+++--+..+..|.....++-|.....  +|.+.+.+.+...-...--+.+.........|..  +++.+-  
T Consensus        13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~--   90 (314)
T KOG1444|consen   13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM--   90 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH--
Confidence            3444555555555666777777777665555554  8888887777665554222333333333344432  233332  


Q ss_pred             HHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          264 SGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                          ...-.+++++.+....+++...+|+.+++.+..++|.+++...+.....+++|......
T Consensus        91 ----i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~  149 (314)
T KOG1444|consen   91 ----LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF  149 (314)
T ss_pred             ----HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence                22245789999999999999999999999999999999999999999999998776543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.19  E-value=0.69  Score=40.30  Aligned_cols=132  Identities=16%  Similarity=0.155  Sum_probs=96.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH----------HHhhhccCCCCCCHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPI----------VYFRERKNRPKLTIHILCQ   74 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~----------~~~~~~~~~~~~~~~~~~~   74 (366)
                      --.|.++++++..+-|.....-...-.+ .-+.-.+.+.-.+-+.+.+-.-          +.+..|.      ...+..
T Consensus       170 ~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh------P~~~~~  243 (337)
T KOG1580|consen  170 FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRH------PYVFWD  243 (337)
T ss_pred             cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhc------cHHHHH
Confidence            3478899999998888887765544322 1122333333344444443322          2222221      245666


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           75 LFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      +...++.+ ++++.+.|.-..+-+|-..+++..+--.|+.+.+.+++..+++.+|      |+|..+.+.|...=.
T Consensus       244 l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  244 LTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHh
Confidence            77888888 9999999999999999999999999999999999999999999999      999999998877643

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.40  E-value=0.044  Score=46.16  Aligned_cols=63  Identities=22%  Similarity=0.168  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          266 LCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      .+...|..++++++++.++.+...+-.+..++++++++++....+++..++.+.|++...+..
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D  127 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD  127 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence            456678999999999999999999999999999999999999999999999999998877544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=93.30  E-value=0.31  Score=42.00  Aligned_cols=135  Identities=18%  Similarity=0.159  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccCC----CCCCHHHHHHHHHHHHHHH
Q 041425            9 PVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPIVYFRERKNR----PKLTIHILCQLFFSALIGL   83 (366)
Q Consensus         9 g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~   83 (366)
                      |++.+...-+.-+..-...|...+. +..-+...++..+++.++++.+-...+.+..    ..++.......++.|++. 
T Consensus       156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-  234 (309)
T COG5070         156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-  234 (309)
T ss_pred             ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-
Confidence            3444433333333333334433321 3556788899999999988877655443221    123445566788889888 


Q ss_pred             HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      +.-.+|.-++++.++....+++-.+.-.-.++.+.++++|+.++..      +.+++++++..++-.
T Consensus       235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~s------i~sillGflsg~iYa  295 (309)
T COG5070         235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLS------IFSILLGFLSGAIYA  295 (309)
T ss_pred             hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHH------HHHHHHHHHHHHHHH
Confidence            7778899999999999999999999888899999999999999999      999999987776654

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=93.01  E-value=0.52  Score=43.56  Aligned_cols=139  Identities=12%  Similarity=0.066  Sum_probs=85.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHH-HHHHHHHHHHHHHHH-H-hcCCC-cccccCchhHHHHHHH
Q 041425          184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTI-ISFFGAIQSAILSLI-I-ERNLP-GWVLKGKLETIGVIYC  259 (366)
Q Consensus       184 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~l~~  259 (366)
                      +...|+++..+++++.+.+.+-.||..+- +  .+.... +.+++-+ ..|.... . -++.. .+...+...+....+.
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~W-s--WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~   79 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKVKGW-S--WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLF   79 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhcCCc-c--HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence            44799999999999999999999996543 2  222222 2333332 2332222 1 11211 1222233445555556


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCC-------ccchhhHHHHHHHHHHHhhhhcc
Q 041425          260 GMVGSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRE-------RIYLGSALGSILVIVGMYILLWG  327 (366)
Q Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e-------~~s~~~~iG~~lii~g~~l~~~~  327 (366)
                      |+ .-.++-..|..++++.+.+. .++..-+..++..++-.++.|+       +-....++|.++.++|+.+..+.
T Consensus        80 G~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   80 GV-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             HH-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence            66 36788888999999999755 3444555556666665554332       22346778999999999987764

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.15  E-value=0.66  Score=41.41  Aligned_cols=142  Identities=18%  Similarity=0.248  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCC-CHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPIVYFRER----KNRPKL-TIHILCQLFFSA   79 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~g   79 (366)
                      .+.|+++...+++.-+...+..|..+.. |=.-+.+.++..+.+.++++|...+.+.    ...++. .++.|..+.+.|
T Consensus       183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg  262 (347)
T KOG1442|consen  183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG  262 (347)
T ss_pred             chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence            5789999999999999999999966544 1225778899999999999998876542    222333 567778888888


Q ss_pred             HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcC
Q 041425           80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKG  154 (366)
Q Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~  154 (366)
                      ++++.++ +.-.+=++.++|-...+--..-...-.+++..+++|..+...      |-+-++.+.|-..-++-+.
T Consensus       263 lfgF~mg-yvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk~  330 (347)
T KOG1442|consen  263 LFGFAMG-YVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVKE  330 (347)
T ss_pred             HHHHHhh-heeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHHH
Confidence            8884444 334445566666544444444455557788899999999999      9999999999887765443

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=90.57  E-value=3.4  Score=37.61  Aligned_cols=137  Identities=18%  Similarity=0.163  Sum_probs=93.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHhhhccCC-------CCC----CHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIIDRG----LNHLVIVAYRQSISVVFLAPIVYFRERKNR-------PKL----TIH   70 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~-------~~~----~~~   70 (366)
                      +..|..+...++++-|.-+.+.++.++++    -+|+...+--.-...+.++|..+..++...       +..    -++
T Consensus       162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r  241 (349)
T KOG1443|consen  162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR  241 (349)
T ss_pred             eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence            35788999999999999999999888652    236665555555555556665554443221       111    123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425           71 ILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL  149 (366)
Q Consensus        71 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  149 (366)
                      ....+...|.+. ++--.+-+.=++.++.-..++..-..-+.+.+++..+.+++++...      |.|..++..|+.+=
T Consensus       242 v~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN------~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  242 VIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLN------WLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhH------HHHHHHHHHHHHHh
Confidence            333444455555 3333444455666776666777777788899999999999999999      99999999999876

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=90.22  E-value=2.7  Score=31.71  Aligned_cols=112  Identities=18%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425           11 LMMVAVNFGFATVNAFLRKIIDRGLNH------LVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT   84 (366)
Q Consensus        11 l~~~~~~~~~~~~~~~~k~~~~~~~~~------~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   84 (366)
                      .-+++...+||.+.++.|.... |++.      ....++|-.....                .+|+++..    -.++ -
T Consensus         6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~tl~----------------l~w~Y~iP----FllN-q   63 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMKTLF----------------LNWEYLIP----FLLN-Q   63 (125)
T ss_pred             HHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHHHHH----------------HhHHHHHH----HHHH-H
Confidence            4467788999999999997754 2332      2222222211110                12333332    2333 3


Q ss_pred             HHHHHHHHhccccCchhhhhhc-cchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425           85 LTQYFLLRGLEYTSATFLCAFL-NTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT  150 (366)
Q Consensus        85 ~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  150 (366)
                      -+..+||.-+++.+.+.+..+. ++.-.|+.+.+..+..|-...+.      ++|..+.++|+.+.+
T Consensus        64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a------~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLA------LLGTSLIVFGIWLCI  124 (125)
T ss_pred             hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhcccccccee------ehhhhHHhhhhhhee
Confidence            4467888899999999998884 57888899999877655555666      899999999987753

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.17  E-value=2.6  Score=37.70  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhc--cCC---CCCCHHHHHHHHHHH
Q 041425            6 QWMPVLMMVAVNFGFATVNAFLRKIID-RGLNHLVIVAYRQSISVVFLAPIVYFRER--KNR---PKLTIHILCQLFFSA   79 (366)
Q Consensus         6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~g   79 (366)
                      +..|+.+.-.+.+.-+...-+-..... ++-+..+++++...++.++++..+.....  +.+   -+.+++.+-..++.+
T Consensus       188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s  267 (367)
T KOG1582|consen  188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS  267 (367)
T ss_pred             ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH
Confidence            445666665555555554444333332 34567888999999998888776654321  011   123566666666666


Q ss_pred             HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425           80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL  151 (366)
Q Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  151 (366)
                      ..+ .++...-..-++.-.+..++.+...--.+|.+++++++.++++...      ..+.++.+.|+.+=..
T Consensus       268 ~~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  268 LAG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMY  332 (367)
T ss_pred             HHh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcc
Confidence            666 5555544444555677777777777888999999999999999998      8899999999998653

>PRK02237 hypothetical protein; Provisional

Probab=87.12  E-value=2.5  Score=32.09  Aligned_cols=45  Identities=16%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             eeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          284 SAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       284 s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      +...-+-.+.+.++.+.+-|++|+...++|..+.++|+.++.+.+
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            445556677888999999999999999999999999998776654

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=84.53  E-value=1.1  Score=40.11  Aligned_cols=64  Identities=17%  Similarity=0.049  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425          263 GSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW  326 (366)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~  326 (366)
                      +-..+..+++.++..++++...++.....+++.+++..+++.+++..+|.|+..+++|++.+-.
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            5666777889999999999999999999999999999999999999999999999999887654

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=84.11  E-value=1.5  Score=39.78  Aligned_cols=131  Identities=11%  Similarity=0.047  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC-----------cccccCchhHHHHHHHHH
Q 041425          193 IAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP-----------GWVLKGKLETIGVIYCGM  261 (366)
Q Consensus       193 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~g~  261 (366)
                      +++.+||+-+-..+|-..++...+ ....+=+..+.++...+..+.-+...           +....+...+...+..|+
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv   80 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV   80 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence            456678887777777776643322 12333334443333333333211111           111111122222333333


Q ss_pred             HHHHHHHHHHHHHHhhcCcceeeecc-chhHHHHHHHHHHHcCCccc--hhhHHHHHHHHHHHhhhhc
Q 041425          262 VGSGLCYVGMSWCVKKRGPVFTSAFS-PLTQIVVAIFDFSVLRERIY--LGSALGSILVIVGMYILLW  326 (366)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~pi~a~~~~~~~~~e~~s--~~~~iG~~lii~g~~l~~~  326 (366)
                       .--+++++..+++...+-+.+-++. .+..++.+.+.|+ ++.+.+  ...+.|.+++++++++-..
T Consensus        81 -vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~  146 (336)
T PF07168_consen   81 -VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA  146 (336)
T ss_pred             -hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence             4557999999999998877665554 3344445555553 344443  3556788888888877543

Transport is dependent on glucose and a proton gradient [].

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=81.38  E-value=2.4  Score=32.08  Aligned_cols=45  Identities=18%  Similarity=0.285  Sum_probs=37.3

Q ss_pred             eccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcccc
Q 041425          285 AFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKS  329 (366)
Q Consensus       285 ~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~  329 (366)
                      ...-+-.+.+.++++.+-+++|+...++|..+.++|+.++.+.++
T Consensus        62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            344455677889999999999999999999999999988776543

; GO: 0016020 membrane

>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional

Probab=80.34  E-value=37  Score=29.18  Aligned_cols=34  Identities=12%  Similarity=0.204  Sum_probs=24.2

Q ss_pred             HHHHHHHcCCccchhhHHHHHHHH--HHHhhhhccc
Q 041425          295 AIFDFSVLRERIYLGSALGSILVI--VGMYILLWGK  328 (366)
Q Consensus       295 ~~~~~~~~~e~~s~~~~iG~~lii--~g~~l~~~~~  328 (366)
                      -.+|..++.+..=+.+.+|..|.+  +|.+...+++
T Consensus       133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~  168 (198)
T PRK06638        133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRE  168 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            455778888888888888887766  4655555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.01
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.67
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.55
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.52

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.01  E-value=2.8e-10  Score=90.53  Aligned_cols=70  Identities=11%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcceeeec-cchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          259 CGMVGSGLCYVGMSWCVKKRGPVFTSAF-SPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      ++++++++++.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++..+.+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4667888999999999999999999998 899999999999999999999999999999999999987644

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.67  E-value=4.4e-08  Score=75.09  Aligned_cols=70  Identities=11%  Similarity=0.198  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcceeeec-cchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425          259 CGMVGSGLCYVGMSWCVKKRGPVFTSAF-SPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK  328 (366)
Q Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~  328 (366)
                      .++++..+++.++.+++|+.+.+.+-.+ ..+.|+++.+++++++||++|..+++|.++|+.|+++....+
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4556778999999999999999999888 899999999999999999999999999999999999887643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.55  E-value=4.4e-07  Score=69.44  Aligned_cols=69  Identities=17%  Similarity=0.333  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425           77 FSALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL  151 (366)
Q Consensus        77 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  151 (366)
                      +.+++.+.+++.++.+++++.|.+.+..+ ..+.|+++.+++++++||++++.+      ++|+.+.+.|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            45566668999999999999999999888 799999999999999999999999      9999999999999853

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.52  E-value=1.1e-07  Score=75.52  Aligned_cols=69  Identities=17%  Similarity=0.333  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425           77 FSALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL  151 (366)
Q Consensus        77 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  151 (366)
                      +.+++.+.+++.++++++++.|++.+..+ .++.|+++.++++++++|++++.+      ++|+.+.+.|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            46666669999999999999999999888 899999999999999999999999      9999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00