Citrus Sinensis ID: 041442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVGV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccccccccccccEEEEcccccEEEcccHHHHHHHHHHHcHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNvsndknkyRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTkrqapkitmddkvflppppksadshepscsggvvvasqdgkiVLENTLDARLNVAFRQNLPEIRKRLLGKVGV
Flexible Loop (DISEMBL)
mndadvsrqiQQMVRFIRQEAEEKANeisvsaeeefniEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKellnvsndknkyrTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKefaektkrqapkitmddkvFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARlnvafrqnlpeirkrllgkvgv
Low Complexity Region (SEG)
MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVeeakkefaektkRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVGV
Disordered region (IsUnstruct)
*************************************************************************LNAARIKFLQ******************NV*NDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESI********************************************VVVASQDGKIVLENTLDARLNVAFRQNLPEIR*********
Disordered Region (DISOPRED)
*******RQIQQMVRFIRQEAEEKANEISVSAE*EFNIEKMQLFEA**********************************FLQAQDDAVNAMKEAAS*********KNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG*
Disordered Region (DISEMBL)
MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKI**************RKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPP**************GVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVGV
Disordered Region (DISPRO)
MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKS****EPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKxxxxxxxxxxxxxxxxxxxxxxxxxRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	0.995	0.995	0.720	2e-92
Q9SWE7	230	V-type proton ATPase subu	N/A	no	0.995	0.995	0.716	2e-91
Q39258	230	V-type proton ATPase subu	yes	no	0.991	0.991	0.710	3e-90
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.982	0.961	0.697	5e-89
Q40272	226	V-type proton ATPase subu	N/A	no	0.978	0.995	0.712	9e-88
O23948	237	V-type proton ATPase subu	N/A	no	0.991	0.962	0.679	2e-86
P0CAN7	237	V-type proton ATPase subu	no	no	0.995	0.966	0.668	3e-85
Q41396	229	V-type proton ATPase subu	N/A	no	0.978	0.982	0.672	7e-82
O00780	233	V-type proton ATPase subu	yes	no	0.973	0.961	0.402	4e-42
P54611	226	V-type proton ATPase subu	yes	no	0.939	0.955	0.418	1e-38

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  338 bits (866), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/229 (72%), Positives = 194/229 (84%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYERK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E R+KIEYSMQLNA+RIK LQAQDD V+ M EAASKE+LNVS D N Y+ +LKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCR+ D  LVES++E AK+E+A+K +   P+I +D  ++LPP P   +
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
           +H PSCSGGVVVAS+DGKIV ENTLDARL+V FR+ LPEIRK+L+ +V 
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA 229

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  334 bits (857), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 193/229 (84%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYERK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E R+KIEYSMQLNA+RIK LQAQDD V+ M EAASKE+LNVS D N Y+ +LK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCR+ D  LVES++E AK+E+A+K +   P+I +D  ++LPP P   +
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
           +H PSCSGGVVVAS+DGKIV ENTLDARL+V FR+ LPEIRK+L+ +V 
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA 229

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  331 bits (848), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 162/228 (71%), Positives = 193/228 (84%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MND DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+Q+YE+K K
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           QA+ R+KI+YSMQLNA+RIK LQAQDD VNAMK+ A+K+LLNVS D+  Y+ +LK LIVQ
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
            +LRL E +VLLRCRE D  LVE+++++AK+E+A K K  AP++ +D K+FLPPPPKS D
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKV 228
            H   CSGGVV+AS+DGKIV ENTLDARL+VAFR  LP IRK L G+V
Sbjct: 181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQV 228

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  327 bits (837), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 159/228 (69%), Positives = 201/228 (88%), Gaps = 2/228 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEIS+SAEEEFNIE++QL E+ K+K++Q+Y+RK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q + R++I+YS QLNA+RIK+LQAQDD V AMK++A+K+LL VSNDKN Y+ +LK LI++
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVF--LPPPPKS 178
           S+LRL E +VLLRCREMD+K+VES++E+AK+++AEK K  +PKIT+D+KVF   PP PK 
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query: 179 ADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
            DSH+P CSGGVV+ASQDGKIV ENTLDARL+VAFRQ LP+IR RL+G
Sbjct: 181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLVG 228

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  322 bits (826), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 161/226 (71%), Positives = 186/226 (82%), Gaps = 1/226 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYERK+K
Sbjct: 1   MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q + RRKIEYSMQLNA+RIK LQAQDD VNAMKEAASKELL VS D ++YR +LK LIVQ
Sbjct: 61  QVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCRE D+  V  ++  A++E+ EK     P++ +DD + LPP P S D
Sbjct: 121 SLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVDD-IHLPPAPTSYD 179

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
           SHE SCSGGVV+AS+DGKIV ENTLDARL VAFR+ LP+IRK+L  
Sbjct: 180 SHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFA 225

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  318 bits (815), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/237 (67%), Positives = 191/237 (80%), Gaps = 9/237 (3%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           M+DADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYE+K K
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E R+KIEYSMQLNA+RIK LQAQDD VNAMKE+ASK+ LNVS+D + Y+ +LK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPK--- 177
           S++RL E  VLLRCR+ D  LVES+++ AK+E+A K     P+I +DD V LPP P    
Sbjct: 121 SLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVDD-VHLPPGPSHHH 179

Query: 178 -----SADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
                 A++H P CSGGVV+AS+DGKIV ENTLDARL+VAF + LPEIRK L G+V 
Sbjct: 180 GFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVA 236

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  314 bits (805), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 188/235 (80%), Gaps = 6/235 (2%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEK+QL EAEKKKI+QEYE+K K
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVS------NDKNKYRTVL 114
           Q + R+KI+YSMQLNA+RIK LQAQDD VNAMKE A+K+LL VS      +  ++Y+ +L
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query: 115 KGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPP 174
           K LIVQ +LRL E AVLLRCRE D  +VES++++A +E+ +K K  AP+I +D  +FLPP
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query: 175 PPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
            P   D H  SC+GGVV+AS+DGKIV ENTLDARL VAFR  LPEIRK L GKVG
Sbjct: 181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVG 235

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  303 bits (776), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 178/226 (78%), Gaps = 1/226 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MND DV +QIQQMVRFIRQEAEEKANEISV+AEEEFNIEK+QL EAEKKKI+ EYERK K
Sbjct: 1   MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q + RRKIEYSMQLNA+RIK LQAQDD VN+MKE A+KELL VS D + Y+ +LK L+VQ
Sbjct: 61  QVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E  VLLRCRE D  LVE ++  AK+E+AEK +   P+I +D  + LP  P    
Sbjct: 121 SLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVDS-IHLPAGPSHHK 179

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
            H   CSGGVV+AS+DGKIV ENTLDARL VAFR+ LP+IRK+L  
Sbjct: 180 EHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFA 225

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|O00780|VATE_DICDI V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1

 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 148/226 (65%), Gaps = 2/226 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           M+D  V+ Q+ QM  FI QEA++KANEI   A +EF  EK ++F+ EK KI +EYE+K K
Sbjct: 1   MDDTQVNAQLDQMKNFILQEAQDKANEIKTKATQEFTSEKGRIFQNEKIKIIKEYEKKQK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             E ++KI  S +LN +R+  L+ +++ +  + + A K+L  +S+DK+KY+T+LK LI Q
Sbjct: 61  LIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDKYQTILKNLIYQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
             ++LNE  + +  R+ D  L+E    EA  ++ +K   ++  +++D + FLP  PKS D
Sbjct: 121 GFVKLNENKIQVVGRKEDAGLLEKATTEAAAQY-KKNVGKSIDVSVDKERFLPQGPKS-D 178

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
            + P+C GGV++++ +G+I+ +NTLD+RL + F Q  P IR +L G
Sbjct: 179 YNGPTCCGGVILSALEGRIICKNTLDSRLEICFDQLTPVIRTQLYG 224

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|P54611|VATE_DROME V-type proton ATPase subunit E OS=Drosophila melanogaster GN=Vha26 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 151/227 (66%), Gaps = 11/227 (4%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           ++DADV +QI+ M+ FI QEA EKA EI   AEEEFNIEK +L + ++ KI + YE+K K
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E ++KI+ S  LN AR+K L+ ++D V+++ + A K L  V+ ++++Y TVL  LIVQ
Sbjct: 63  QVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQ 122

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
            + ++ E  V+LRCRE+D  LV +++  A +++  +   Q  ++ +D+K FL     SAD
Sbjct: 123 GLFQIMEPKVILRCREVDVPLVRNVLPAAVEQYKAQIN-QNVELFIDEKDFL-----SAD 176

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK 227
               +C GGV + + +G+I + NTL++RL++  +Q +PEIR  L G+
Sbjct: 177 ----TC-GGVELLALNGRIKVPNTLESRLDLISQQLVPEIRNALFGR 218

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
224139398	230	predicted protein [Populus trichocarpa]	0.995	0.995	0.746	6e-97
356541076	228	PREDICTED: V-type proton ATPase subunit	0.982	0.991	0.754	1e-95
356544466	228	PREDICTED: V-type proton ATPase subunit	0.982	0.991	0.75	6e-95
225439111	230	PREDICTED: V-type proton ATPase subunit	0.991	0.991	0.758	8e-95
192910830	229	vacuolar ATP synthase subunit E [Elaeis	0.986	0.991	0.767	8e-95
255537687	230	vacuolar ATP synthase subunit E, putativ	0.995	0.995	0.720	1e-90
12585474	230	RecName: Full=V-type proton ATPase subun	0.995	0.995	0.720	1e-90
12585492	230	RecName: Full=V-type proton ATPase subun	0.995	0.995	0.716	1e-89
324331819	229	vacuolar ATP synthase subunit [Camellia	0.995	1.0	0.708	1e-88
15237054	230	V-type proton ATPase subunit E1 [Arabido	0.991	0.991	0.710	2e-88

>gi|224139398|ref|XP_002323093.1| predicted protein [Populus trichocarpa] gi|118482094|gb|ABK92978.1| unknown [Populus trichocarpa] gi|222867723|gb|EEF04854.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 171/229 (74%), Positives = 206/229 (89%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVSRQIQQM RFIRQEAEEKANEISVSAEEEFNIEK+Q+ EAEKK+I+QE+ERK+K
Sbjct: 1   MNDADVSRQIQQMARFIRQEAEEKANEISVSAEEEFNIEKLQILEAEKKRIRQEFERKTK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q + RRKIEYSMQLNA+RIK LQAQDD VN+MKE+ASK+LL VSN+K +Y+ +LK LIVQ
Sbjct: 61  QVDIRRKIEYSMQLNASRIKVLQAQDDIVNSMKESASKQLLRVSNNKKEYKKLLKDLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S++RL E AVLLRCRE+DRK+VES++E+A + +AEKTK  AP +T+D  V+LPPPPKS+D
Sbjct: 121 SLIRLKEPAVLLRCREVDRKIVESVLEDASRLYAEKTKVHAPDVTIDTTVYLPPPPKSSD 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
           SH+P CSGGVV+AS+DGKIV ENTLDARL+VAF + LPEIRK+LLGK+G
Sbjct: 181 SHDPFCSGGVVMASKDGKIVFENTLDARLDVAFGKKLPEIRKQLLGKLG 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541076|ref|XP_003539009.1| PREDICTED: V-type proton ATPase subunit E2-like [Glycine max]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/228 (75%), Positives = 201/228 (88%), Gaps = 2/228 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           M DADVSRQIQQM+RFIRQEAEEKANEISV+AEEEFNIEK+QL EAEK+KI+QEYERK+K
Sbjct: 1   MKDADVSRQIQQMIRFIRQEAEEKANEISVAAEEEFNIEKLQLLEAEKRKIRQEYERKAK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q + RRKIEYS QLNAARIK LQAQDDA+ +MK+AA K LL VSNDK  Y+ +LK +IVQ
Sbjct: 61  QIDVRRKIEYSTQLNAARIKVLQAQDDAMGSMKDAAKKGLLRVSNDKKVYKKLLKDMIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSA- 179
            +LRL E +VLLRCRE DRKLVES++EEAKKE++EK   Q+PKI++DD+V+LPPPPK+  
Sbjct: 121 GLLRLREPSVLLRCRESDRKLVESLIEEAKKEYSEKASMQSPKISLDDRVYLPPPPKNGA 180

Query: 180 -DSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
            DSHEP CSGGVV+AS+DGKIVLENTLDARL+V FRQ LPE+RKRLLG
Sbjct: 181 VDSHEPYCSGGVVLASEDGKIVLENTLDARLDVIFRQKLPEVRKRLLG 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544466|ref|XP_003540671.1| PREDICTED: V-type proton ATPase subunit E2-like [Glycine max]

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 200/228 (87%), Gaps = 2/228 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           M DADVSRQIQQM+RFIRQEAEEKANEISV+AEEEFNIEK+QL EAEK+KI+QEYERK+K
Sbjct: 1   MKDADVSRQIQQMIRFIRQEAEEKANEISVAAEEEFNIEKLQLLEAEKRKIRQEYERKAK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q + RRKIEYS QLNAARIK LQAQDDAV AMK+AA K LL +SNDK  YR ++K +IVQ
Sbjct: 61  QIDVRRKIEYSTQLNAARIKVLQAQDDAVGAMKDAAKKGLLRISNDKKVYRKLVKDMIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSA- 179
            +LRL E +VLLRCRE DRKLVES++EEAKKE++EK   QAPKI +DD+V+LPP PK++ 
Sbjct: 121 GLLRLREPSVLLRCRESDRKLVESLIEEAKKEYSEKANMQAPKIALDDRVYLPPSPKNSA 180

Query: 180 -DSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
            DSHEP C+GG+V+AS+DGKIVLENTLDARL+V FRQ LPE+RKRLLG
Sbjct: 181 VDSHEPYCTGGIVLASEDGKIVLENTLDARLDVIFRQKLPEVRKRLLG 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439111|ref|XP_002270168.1| PREDICTED: V-type proton ATPase subunit E1 [Vitis vinifera]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 173/228 (75%), Positives = 195/228 (85%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVSRQIQQMVRFI QEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYERK+K
Sbjct: 1   MNDADVSRQIQQMVRFILQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E RRKIEYSMQLNA+RIK LQAQDD VN+MKEA  KELL VS+D N Y+ +LKGLIVQ
Sbjct: 61  QVEIRRKIEYSMQLNASRIKVLQAQDDLVNSMKEATGKELLRVSDDTNGYKMLLKGLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCRE+D   VES++ EAK+E+A+K K   PK+T+D+ V+LPPPP S D
Sbjct: 121 SLLRLKEPAVLLRCREIDLGPVESVLGEAKQEYADKAKVHVPKVTIDNLVYLPPPPSSVD 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKV 228
           SH   CSGGVV+ASQDGKIV ENTLDARL+V FRQ LPEIRK L G+V
Sbjct: 181 SHSLFCSGGVVLASQDGKIVCENTLDARLDVVFRQKLPEIRKLLFGQV 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910830|gb|ACF06523.1| vacuolar ATP synthase subunit E [Elaeis guineensis]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 175/228 (76%), Positives = 199/228 (87%), Gaps = 1/228 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEK+KI+QEYERK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKRKIRQEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E RRKIEYSMQLNA+RIK LQAQDD VN+MKEAASKELL VSND   Y+ +LKGL+VQ
Sbjct: 61  QVEIRRKIEYSMQLNASRIKVLQAQDDLVNSMKEAASKELLRVSNDSKAYKKLLKGLMVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E +VLLRCRE+DRKLVES++ EAK+E+A+K    APKIT+D+ V+LPPPP   +
Sbjct: 121 SLLRLKEPSVLLRCREVDRKLVESVLNEAKQEYADKANVHAPKITVDN-VYLPPPPTDNE 179

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKV 228
            H   CSGGVV+ASQDGKIV ENTLDARL+VAFRQ LPEIRKRL GK+
Sbjct: 180 IHGTFCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPEIRKRLFGKM 227

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/229 (72%), Positives = 193/229 (84%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKK++QEYERK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKVRQEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E R+KIEYSMQLNA+RIK LQAQDD VNAMKEAA+K+LLNVS D + YR +LK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCR+ D  L+ES+++ AK+E+AEK    AP+I +D+ VFLPP P   +
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLLESVLDSAKEEYAEKVNVHAPEIIVDNHVFLPPAPSHHN 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
            H P CSGGVV+AS+DGKIV ENTLDARL+V FR+ LPEIRK+L  +V 
Sbjct: 181 VHGPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKKLFSQVA 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/229 (72%), Positives = 194/229 (84%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYERK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E R+KIEYSMQLNA+RIK LQAQDD V+ M EAASKE+LNVS D N Y+ +LKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCR+ D  LVES++E AK+E+A+K +   P+I +D  ++LPP P   +
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
           +H PSCSGGVVVAS+DGKIV ENTLDARL+V FR+ LPEIRK+L+ +V 
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA 229

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 193/229 (84%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYERK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E R+KIEYSMQLNA+RIK LQAQDD V+ M EAASKE+LNVS D N Y+ +LK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCR+ D  LVES++E AK+E+A+K +   P+I +D  ++LPP P   +
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
           +H PSCSGGVVVAS+DGKIV ENTLDARL+V FR+ LPEIRK+L+ +V 
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA 229

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324331819|gb|ADY38690.1| vacuolar ATP synthase subunit [Camellia sinensis]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 193/230 (83%), Gaps = 1/230 (0%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MNDADVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+QEYERK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           Q E RRKIEYSMQLNA+RIK LQAQDD VN+MK+AA+KELLNVS+D + YR +LK LIVQ
Sbjct: 61  QVEVRRKIEYSMQLNASRIKVLQAQDDVVNSMKDAAAKELLNVSHDHHVYRKLLKELIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
           S+LRL E AVLLRCR+ D   VE +V  AK+E+A+K K  AP+I +D  ++LP  P   +
Sbjct: 121 SLLRLKEPAVLLRCRKEDLNHVEHVVHSAKEEYADKAKVHAPEIVVDS-IYLPAAPSHHN 179

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVGV 230
           +H P CSGG+V+AS+DGKIV EN+LDARL+V FR+ LPEIRK+L G+V V
Sbjct: 180 AHGPFCSGGIVLASRDGKIVFENSLDARLDVVFRKKLPEIRKQLFGQVAV 229

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237054|ref|NP_192853.1| V-type proton ATPase subunit E1 [Arabidopsis thaliana] gi|12643432|sp|Q39258.2|VATE1_ARATH RecName: Full=V-type proton ATPase subunit E1; Short=V-ATPase subunit E1; AltName: Full=Protein EMBRYO DEFECTIVE 2448; AltName: Full=Vacuolar H(+)-ATPase subunit E isoform 1; AltName: Full=Vacuolar proton pump subunit E1 gi|3600058|gb|AAC35545.1| similar to vacuolar ATPases [Arabidopsis thaliana] gi|4850294|emb|CAB43050.1| H+-transporting ATPase chain E, vacuolar [Arabidopsis thaliana] gi|7267814|emb|CAB81216.1| H+-transporting ATPase chain E, vacuolar [Arabidopsis thaliana] gi|17473677|gb|AAL38295.1| similar to vacuolar ATPases [Arabidopsis thaliana] gi|20148607|gb|AAM10194.1| similar to vacuolar ATPases [Arabidopsis thaliana] gi|332657578|gb|AEE82978.1| V-type proton ATPase subunit E1 [Arabidopsis thaliana]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 162/228 (71%), Positives = 193/228 (84%)

Query: 1   MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
           MND DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+Q+YE+K K
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
           QA+ R+KI+YSMQLNA+RIK LQAQDD VNAMK+ A+K+LLNVS D+  Y+ +LK LIVQ
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 121 SMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSAD 180
            +LRL E +VLLRCRE D  LVE+++++AK+E+A K K  AP++ +D K+FLPPPPKS D
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query: 181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKV 228
            H   CSGGVV+AS+DGKIV ENTLDARL+VAFR  LP IRK L G+V
Sbjct: 181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQV 228

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.982	0.961	0.675	1.6e-79
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	0.991	0.991	0.684	7.1e-77
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	0.995	0.966	0.651	1.6e-72
DICTYBASE|DDB_G0275701	233	vatE "vacuolar ATPase subunit	0.973	0.961	0.389	3.3e-40
FB|FBgn0015324	226	Vha26 "Vacuolar H[+]-ATPase 26	0.939	0.955	0.414	1.3e-38
WB|WBGene00006917	226	vha-8 [Caenorhabditis elegans	0.934	0.951	0.398	4.3e-38
ZFIN|ZDB-GENE-030131-4183	226	si:ch211-266k8.3 "si:ch211-266	0.934	0.951	0.384	4.9e-37
ZFIN|ZDB-GENE-041212-51	226	atp6v1e1a "ATPase, H+ transpor	0.934	0.951	0.384	6.3e-37
UNIPROTKB|Q5ZKJ9	226	ATP6V1E1 "Uncharacterized prot	0.934	0.951	0.384	2.1e-36
UNIPROTKB|P11019	226	ATP6V1E1 "V-type proton ATPase	0.934	0.951	0.376	2.7e-36

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 154/228 (67%), Positives = 192/228 (84%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             MNDADVS+QIQQMVRFIRQEAEEKANEIS+SAEEEFNIE++QL E+ K+K++Q+Y+RK K
Sbjct:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             Q + R++I+YS QLNA+RIK+LQAQDD V AMK++A+K+LL VSNDKN Y+ +LK LI++
Sbjct:    61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPP--KS 178
             S+LRL E +VLLRCREMD+K+VES++              +PKIT+D+KVFLPPPP  K 
Sbjct:   121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query:   179 ADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
              DSH+P CSGGVV+ASQDGKIV ENTLDARL+VAFRQ LP+IR RL+G
Sbjct:   181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLVG 228

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 156/228 (68%), Positives = 183/228 (80%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             MND DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEK+QL EAEKKKI+Q+YE+K K
Sbjct:     1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             QA+ R+KI+YSMQLNA+RIK LQAQDD VNAMK+ A+K+LLNVS D+  Y+ +LK LIVQ
Sbjct:    61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
              +LRL E +VLLRCRE D  LVE+++              AP++ +D K+FLPPPPKS D
Sbjct:   121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKV 228
              H   CSGGVV+AS+DGKIV ENTLDARL+VAFR  LP IRK L G+V
Sbjct:   181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQV 228

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 153/235 (65%), Positives = 179/235 (76%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEK+QL EAEKKKI+QEYE+K K
Sbjct:     1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVS------NDKNKYRTVL 114
             Q + R+KI+YSMQLNA+RIK LQAQDD VNAMKE A+K+LL VS      +  ++Y+ +L
Sbjct:    61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query:   115 KGLIVQSMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPP 174
             K LIVQ +LRL E AVLLRCRE D  +VES++              AP+I +D  +FLPP
Sbjct:   121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query:   175 PPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG 229
              P   D H  SC+GGVV+AS+DGKIV ENTLDARL VAFR  LPEIRK L GKVG
Sbjct:   181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVG 235

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

DICTYBASE|DDB_G0275701 vatE "vacuolar ATPase subunit E" [Dictyostelium discoideum (taxid:44689)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 88/226 (38%), Positives = 141/226 (62%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             M+D  V+ Q+ QM  FI QEA++KANEI   A +EF  EK ++F+ EK KI +EYE+K K
Sbjct:     1 MDDTQVNAQLDQMKNFILQEAQDKANEIKTKATQEFTSEKGRIFQNEKIKIIKEYEKKQK 60

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
               E ++KI  S +LN +R+  L+ +++ +  + + A K+L  +S+DK+KY+T+LK LI Q
Sbjct:    61 LIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDKYQTILKNLIYQ 120

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
               ++LNE  + +  R+ D  L+E               +    +++D + FLP  PKS D
Sbjct:   121 GFVKLNENKIQVVGRKEDAGLLEKATTEAAAQYKKNVGKSID-VSVDKERFLPQGPKS-D 178

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
              + P+C GGV++++ +G+I+ +NTLD+RL + F Q  P IR +L G
Sbjct:   179 YNGPTCCGGVILSALEGRIICKNTLDSRLEICFDQLTPVIRTQLYG 224

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 94/227 (41%), Positives = 146/227 (64%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             ++DADV +QI+ M+ FI QEA EKA EI   AEEEFNIEK +L + ++ KI + YE+K K
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             Q E ++KI+ S  LN AR+K L+ ++D V+++ + A K L  V+ ++++Y TVL  LIVQ
Sbjct:    63 QVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQ 122

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
              + ++ E  V+LRCRE+D  LV +++             Q  ++ +D+K FL     SAD
Sbjct:   123 GLFQIMEPKVILRCREVDVPLVRNVLPAAVEQYKAQI-NQNVELFIDEKDFL-----SAD 176

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK 227
             +    C GGV + + +G+I + NTL++RL++  +Q +PEIR  L G+
Sbjct:   177 T----C-GGVELLALNGRIKVPNTLESRLDLISQQLVPEIRNALFGR 218

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00006917 vha-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 90/226 (39%), Positives = 141/226 (62%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             ++D DV +Q++ M+ FI QEA EKA EI   AEEEFNIEK +L + +++KI + +E+K K
Sbjct:     3 ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             Q E +RKI+ S  LNA R++ L+A++D + A+ + A   L  +S D  +Y  +LKGL++Q
Sbjct:    63 QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
              +L+L EK V+LRCRE D +LVE ++                K+ +D + FLP   +SA 
Sbjct:   123 GLLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWG-STTKVVLDKQNFLPS--ESA- 178

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
                    GGV ++++ GKI + +TL++RL +   Q +P++R  L G
Sbjct:   179 -------GGVELSARAGKIKVSSTLESRLELIANQIVPQVRTALFG 217

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030131-4183 si:ch211-266k8.3 "si:ch211-266k8.3" [Danio rerio (taxid:7955)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 87/226 (38%), Positives = 136/226 (60%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             ++DA V +QI+ M+ FI QEA EKA EI   AEEEFNIEK +L + ++ KI + YE+K K
Sbjct:     3 LSDAAVQKQIKHMMAFIDQEASEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             Q E ++KI+ S  +N AR+K L+A+DD +  +   A + L  ++ D N+Y+T+L+GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLKARDDMIKDLLNDARERLATIAKDPNQYQTLLEGLVLQ 122

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
                +L E  V++RCR+ D  +V++ V                ++ +D+  FL        
Sbjct:   123 GFYQLLESRVIIRCRKEDVAMVQTAVQKNIPIYKEAVKSNI-EVRIDENTFL-------- 173

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
                P  SGGV V + DG+I   NTL++RL++  +Q +P+IR  L G
Sbjct:   174 --SPDISGGVEVYNADGRIKASNTLESRLDLLAQQMMPDIRVSLFG 217

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

ZFIN|ZDB-GENE-041212-51 atp6v1e1a "ATPase, H+ transporting, lysosomal , V1 subunit E1a" [Danio rerio (taxid:7955)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 87/226 (38%), Positives = 136/226 (60%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             ++DA V +QI+ M+ FI QEA EKA EI   AEEEFNIEK +L + ++ KI + YE+K K
Sbjct:     3 LSDAAVQKQIKHMMAFIDQEASEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             Q E ++KI+ S  +N AR+K L+A+DD +  +   A + L  ++ D N+Y+T+L+GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLKARDDMIKDLLNDARERLATIAKDPNQYQTLLEGLVLQ 122

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
                +L E  V++RCR+ D  +V++ V                ++ +D+  FL        
Sbjct:   123 GFYQLLEPRVIIRCRKEDVAMVQTAVQKNIPIYKEAVKSNI-EVRIDENTFL-------- 173

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
                P  SGGV V + DG+I   NTL++RL++  +Q +P+IR  L G
Sbjct:   174 --SPDISGGVEVYNADGRIKASNTLESRLDLLAQQMMPDIRVSLFG 217

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|Q5ZKJ9 ATP6V1E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 87/226 (38%), Positives = 133/226 (58%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             ++DADV +QI+ M+ FI QEA EKA EI   AEEEFNIEK +L + ++ KI + YE+K K
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             Q E ++KI+ S  +N AR++ L+A+DD ++ +   A   L  V  D  +Y+ +L GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLRVLKARDDLISDLLNEAKLRLAKVVKDTARYQILLDGLVLQ 122

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
                +L E  +++RCR+ D  +V++ V            R    I +D   FLP       
Sbjct:   123 GFYQLLEPRIVVRCRKQDLPMVKAAVQKSIPIYKNATKRDVD-IHIDQDNFLPE------ 175

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
                   +GGV + + DGKI + NTL++RL++  +Q +PEIR  L G
Sbjct:   176 ----EIAGGVEIYNSDGKIKVSNTLESRLDLVAQQMMPEIRVALFG 217

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|P11019 ATP6V1E1 "V-type proton ATPase subunit E 1" [Bos taurus (taxid:9913)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 85/226 (37%), Positives = 134/226 (59%)

Query:     1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
             ++DADV +QI+ M+ FI QEA EKA EI   AEEEFNIEK +L + ++ KI + YE+K K
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ 120
             Q E ++KI+ S  +N AR+K L+A+DD +  +   A + L  V  D  +Y+ +L GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SMLRLNEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAPKITMDDKVFLPPPPKSAD 180
              + +L E  +++RCR+ D  LV++ V            R    + +D + +LP       
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDVD-VQIDQEAYLPE------ 175

Query:   181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
                   +GGV + + D KI + NTL++RL++  +Q +PE+R  L G
Sbjct:   176 ----EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFG 217

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00780	VATE_DICDI	No assigned EC number	0.4026	0.9739	0.9613	yes	no
Q40272	VATE_MESCR	No assigned EC number	0.7123	0.9782	0.9955	N/A	no
Q6PCU2	VATE1_RAT	No assigned EC number	0.3849	0.9347	0.9513	yes	no
P54611	VATE_DROME	No assigned EC number	0.4185	0.9391	0.9557	yes	no
P11019	VATE1_BOVIN	No assigned EC number	0.3893	0.9347	0.9513	yes	no
O23948	VATE_GOSHI	No assigned EC number	0.6793	0.9913	0.9620	N/A	no
Q39258	VATE1_ARATH	No assigned EC number	0.7105	0.9913	0.9913	yes	no
P50518	VATE1_MOUSE	No assigned EC number	0.3849	0.9347	0.9513	yes	no
O13687	VATE_SCHPO	No assigned EC number	0.3230	0.9391	0.9515	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.7161	0.9956	0.9956	N/A	no
P22203	VATE_YEAST	No assigned EC number	0.3228	0.9130	0.9012	yes	no
Q41396	VATE_SPIOL	No assigned EC number	0.6725	0.9782	0.9825	N/A	no
P36543	VATE1_HUMAN	No assigned EC number	0.3849	0.9347	0.9513	yes	no
Q9MB46	VATE_CITUN	No assigned EC number	0.7205	0.9956	0.9956	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	5e-57
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	4e-18
PRK03963	198	PRK03963, PRK03963, V-type ATP synthase subunit E;	2e-07
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	1e-06

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  179 bits (455), Expect = 5e-57
 Identities = 94/209 (44%), Positives = 135/209 (64%), Gaps = 15/209 (7%)

Query: 16  FIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLN 75
           FIRQEAEEKA EI   AEEEF IEK +  E  +KKI++ YE+K KQAE  ++I  S   N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 76  AARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCR 135
            AR+K L A+++ ++++ E A + L N+S DK++Y+ +LK LI Q++++L E  V++R R
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120

Query: 136 EMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQ 195
           E D +LV+S ++EAK+E+ EKT +   +   D                  C GGVV+ ++
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGD---------------NIDCIGGVVLETE 165

Query: 196 DGKIVLENTLDARLNVAFRQNLPEIRKRL 224
           DGKI ++NTL+ARL   F Q LPEIRK L
Sbjct: 166 DGKIRVDNTLEARLERVFEQLLPEIRKAL 194

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 78.6 bits (194), Expect = 4e-18
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 27/217 (12%)

Query: 10  IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIE 69
           ++++++ I +EAEE+A EI   A EE    K +     ++ I++   +  K+AE  R+  
Sbjct: 4   LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63

Query: 70  YSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKA 129
            S  L  AR K L+A+++ + ++ EA  ++L N+++D       L+ L+++++ +L    
Sbjct: 64  ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASDPEYE--SLQELLIEALEKLLGGE 121

Query: 130 VLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGG 189
           +++   E D+ LVE I+ E K                                     GG
Sbjct: 122 LVVYLNEKDKALVEQILRELK-------------------------IGVELGEGIDIIGG 156

Query: 190 VVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
           VVV S+DGKI L+NT ++ L     + LPEI ++L G
Sbjct: 157 VVVESRDGKIRLDNTFESILERVLEELLPEISEKLFG 193

Length = 194

>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 26/201 (12%)

Query: 11  QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEY--ERKSKQAEARRKI 68
           + +++ I +EAE+K   I   A++E   EK++    ++ + K E+   +   QAE  ++ 
Sbjct: 5   ELIIQEINREAEQKIEYILEEAQKE--AEKIKEEARKRAESKAEWILRKAKTQAELEKQR 62

Query: 69  EYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEK 128
             +      R K L  Q++ ++ + EA  + L  +  D+  Y   LK L  +++  L E 
Sbjct: 63  IIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPEDE--YFETLKALTKEAVEELGED 120

Query: 129 AVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSG 188
            V++R  E   KL++S +EE + E  +        I + + +                 G
Sbjct: 121 KVVVRSNERTLKLIDSRLEEIRDELGDVE------IELGEPI--------------ETIG 160

Query: 189 GVVVASQDGKIVLENTLDARL 209
           GV+V ++DG I ++NT +AR+
Sbjct: 161 GVIVETKDGTIRVDNTFEARM 181

Length = 198

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 45/223 (20%)

Query: 5   DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEA 64
           D+  + +     IR EA+E+A EI   AE           +AE+    +E E + +  + 
Sbjct: 9   DIRDEARARASEIRAEADEEAEEIIAEAEA----------DAEEILEDREAEAEREIEQL 58

Query: 65  RRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLR 124
           R +   S +L A R + L A+ + +  ++     E+ ++  DK +   + K L+  +   
Sbjct: 59  REQELSSAKLEAKRER-LNARKEVLEDVRNQVEDEIASLDGDKRE--ELTKSLLDAA--- 112

Query: 125 LNEKAVLLRCREMDRKLVESIVEEAKK-EFAEKTKRQAPKITMDDKVFLPPPPKSADSHE 183
            +   V +  R+ D  LV+S++ +    E+A                             
Sbjct: 113 -DADGVRVYSRKDDEDLVKSLLSDYDGLEYAG---------------------------N 144

Query: 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
             C GGVVV S+DG++ + NT D+ L   +  NL EI  RL G
Sbjct: 145 IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFG 187

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PRK03963	198	V-type ATP synthase subunit E; Provisional	100.0
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	100.0
PRK02292	188	V-type ATP synthase subunit E; Provisional	100.0
PRK01194	185	V-type ATP synthase subunit E; Provisional	100.0
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.98
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.94
PRK01005	207	V-type ATP synthase subunit E; Provisional	99.9
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	99.53
PRK06937	204	type III secretion system protein; Reviewed	99.49
PRK09098	233	type III secretion system protein HrpB; Validated	99.46
PRK06669	281	fliH flagellar assembly protein H; Validated	99.43
PRK06328	223	type III secretion system protein; Validated	99.42
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	99.23
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	99.16
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	98.91
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	98.87
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.84
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	98.75
PRK05687	246	fliH flagellar assembly protein H; Validated	98.7
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	98.48
PRK06032	199	fliH flagellar assembly protein H; Validated	98.4
PRK08475	167	F0F1 ATP synthase subunit B; Validated	98.2
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	97.98
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	96.94
PRK03963	198	V-type ATP synthase subunit E; Provisional	96.86
PRK08404	103	V-type ATP synthase subunit H; Validated	96.76
PRK01005	207	V-type ATP synthase subunit E; Provisional	96.64
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	96.6
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	96.5
PRK07352	174	F0F1 ATP synthase subunit B; Validated	96.46
PRK01194	185	V-type ATP synthase subunit E; Provisional	96.42
PRK06231	205	F0F1 ATP synthase subunit B; Validated	96.31
CHL00019	184	atpF ATP synthase CF0 B subunit	96.29
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	96.14
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	96.1
PRK01558	198	V-type ATP synthase subunit E; Provisional	96.01
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	95.95
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	95.92
PRK15322	210	invasion protein OrgB; Provisional	95.89
PRK02292	188	V-type ATP synthase subunit E; Provisional	95.85
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	95.67
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	95.64
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	95.55
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	95.36
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	95.33
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	95.19
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	95.18
PRK05759	156	F0F1 ATP synthase subunit B; Validated	95.01
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	94.93
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	94.71
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	94.59
PRK00106	535	hypothetical protein; Provisional	94.46
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	94.4
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	94.03
PRK15354	224	type III secretion system protein SsaK; Provisiona	93.92
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	93.89
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	93.74
PRK09098	233	type III secretion system protein HrpB; Validated	93.65
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	93.44
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	93.28
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	93.14
PRK06568	154	F0F1 ATP synthase subunit B; Validated	92.96
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	92.83
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	92.53
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	92.24
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	92.17
PRK09173	159	F0F1 ATP synthase subunit B; Validated	92.03
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	92.03
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	91.96
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	91.88
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	91.8
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	91.48
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	91.37
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	91.3
PRK09173	159	F0F1 ATP synthase subunit B; Validated	91.26
PRK12704	520	phosphodiesterase; Provisional	91.18
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	89.86
PRK06231	205	F0F1 ATP synthase subunit B; Validated	89.59
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	89.18
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.44
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	88.38
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	87.83
PRK06568	154	F0F1 ATP synthase subunit B; Validated	87.78
PRK12704	520	phosphodiesterase; Provisional	87.73
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	86.74
PRK00106	535	hypothetical protein; Provisional	86.71
PRK08404	103	V-type ATP synthase subunit H; Validated	84.57
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	84.25
CHL00019	184	atpF ATP synthase CF0 B subunit	84.22
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	83.94
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	83.37
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	82.98
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	82.35
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	82.2
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	81.14
PRK06669	281	fliH flagellar assembly protein H; Validated	80.92
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	80.18

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=6.2e-56  Score=358.96  Aligned_cols=218  Identities=50%  Similarity=0.748  Sum_probs=214.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIK   80 (230)
Q Consensus         1 ~~~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~   80 (230)
                      |||++|+++|++|+.||++||++||+||..+|++||++||.+++++++.+|++.|++++++++++++|+.|+..|++|++
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442           81 FLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ  160 (230)
Q Consensus        81 ~L~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~  160 (230)
                      +|.+|+++|+.+|++|+.+|...+.+++.|+.+|.+||.||+..|.+|.++|+|++.|.++|+..++++..+|....|..
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~  160 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG  160 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999989999999999999999999999999999999999999999999999999987


Q ss_pred             CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCCCC
Q 041442          161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVG  229 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~~~  229 (230)
                       .++.+|.+.|||+          +|.|||+|.+.||+|.|+|||++||+.++++.+|+||+.|||+++
T Consensus       161 -~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~  218 (220)
T KOG1664|consen  161 -VEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANP  218 (220)
T ss_pred             -ceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCC
Confidence             8999999999996          899999999999999999999999999999999999999999886

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=100.00  E-value=3.9e-35  Score=244.37  Aligned_cols=195  Identities=27%  Similarity=0.365  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAV   89 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i   89 (230)
                      |+++++.|+++|+.++++|..+|+.+++........+.......-.++...+++..+++.+|.+.++.|+++|.+|++++
T Consensus         4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~   83 (198)
T PRK03963          4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI   83 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999865444433322222222223345667777888899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCc
Q 041442           90 NAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDK  169 (230)
Q Consensus        90 ~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~  169 (230)
                      +++|+.|+++|.+++.+  .|+.||.+||.+|+..+++++++|+|+|.|..++..+++.+...+    |  +++++++. 
T Consensus        84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~~----~--~~~i~~~~-  154 (198)
T PRK03963         84 SEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDEL----G--DVEIELGE-  154 (198)
T ss_pred             HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHh----C--CeEEEECC-
Confidence            99999999999999886  799999999999999999999999999999999999887665433    3  14555542 


Q ss_pred             cCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcC
Q 041442          170 VFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG  226 (230)
Q Consensus       170 ~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~  226 (230)
                            |       .+|.|||||+|++|+|+|||||++||+.++++++|+|++.|||
T Consensus       155 ------~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~  198 (198)
T PRK03963        155 ------P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG  198 (198)
T ss_pred             ------C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence                  1       4799999999999999999999999999999999999999997

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=6.8e-35  Score=241.94  Aligned_cols=198  Identities=31%  Similarity=0.440  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           16 FIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEA   95 (230)
Q Consensus        16 ~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~~   95 (230)
                      +|.++|+.+|++|..+|+++++.......++....+...+.+..++++..+.++.|.+.+.+|+.+|.+|+++++++|++
T Consensus         1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~   80 (198)
T PF01991_consen    1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE   80 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999998888877777777777777788888888889999999999999999999999999999


Q ss_pred             HHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCCCCC
Q 041442           96 ASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPP  175 (230)
Q Consensus        96 a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L~~~  175 (230)
                      ++++|.+++.+++.|..+|.+||.+++..+++++++|+|+|.|.++++.+++.+...|+...|..++.+..++ .+|   
T Consensus        81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~---  156 (198)
T PF01991_consen   81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL---  156 (198)
T ss_dssp             HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence            9999999999866799999999999999999999999999999999999876555566544443322333332 222   


Q ss_pred             CCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhc
Q 041442          176 PKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLL  225 (230)
Q Consensus       176 ~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF  225 (230)
                              .+|+|||+|+++||+|+|||||++||+.+++.+.|.|++.||
T Consensus       157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF  198 (198)
T PF01991_consen  157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF  198 (198)
T ss_dssp             --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred             --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence                    379999999999999999999999999999999999999999

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=100.00  E-value=1.2e-31  Score=221.77  Aligned_cols=185  Identities=29%  Similarity=0.440  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERK-SKQAEARRKIEYSMQLNAARIKFLQAQDDA   88 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~-~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~   88 (230)
                      |+++++.|+++|+.++++|..+|+.+++.-... ..++..++..++.++ .++.....++..|.+.+..|+.+|.+|+++
T Consensus         3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~~i~~e-a~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~   81 (188)
T PRK02292          3 LETVVEDIRDEARARASEIRAEADEEAEEIIAE-AEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEV   81 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999998532221 122222354444433 444555566778999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442           89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD  168 (230)
Q Consensus        89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~  168 (230)
                      |+++|..|+++|.+++.+  .|..||.+||.++    ++++++|+|+|.|..+++.++...    +        .+++..
T Consensus        82 l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~----~--------~~~~~~  143 (188)
T PRK02292         82 LEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY----D--------GLEYAG  143 (188)
T ss_pred             HHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc----c--------cCeeCC
Confidence            999999999999999986  7999999999998    467889999999999999987632    1        122221


Q ss_pred             ccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442          169 KVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK  227 (230)
Q Consensus       169 ~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~  227 (230)
                            +        .+|.|||||++++|+|+|||||++||+.++++++|+|++.|||.
T Consensus       144 ------~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~  188 (188)
T PRK02292        144 ------N--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE  188 (188)
T ss_pred             ------C--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence                  1        37899999999999999999999999999999999999999984

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=100.00  E-value=8.8e-31  Score=215.99  Aligned_cols=179  Identities=20%  Similarity=0.317  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERK-SKQAEARRKIEYSMQLNAARIKFLQAQDDA   88 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~-~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~   88 (230)
                      |+++++.|+++|+++|++|..+|+.+++.-... ..++.+++...|.++ ..++...+++.+|.|.+++|+.+|.+|+++
T Consensus         3 le~i~~~I~~ea~~~a~~I~~eA~~~aeei~~e-a~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~   81 (185)
T PRK01194          3 LEDVIKDIEKSREEKKKEINDEYSKRIEKLEKE-CDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREI   81 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            788999999999999999999999998532211 233334455666544 567777788889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442           89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD  168 (230)
Q Consensus        89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~  168 (230)
                      |+++|+.|+++|.++++++ .|+++|.+||.+|+..+ ++.++|+|++.|..++++.                 ++++. 
T Consensus        82 I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~-----------------~l~~~-  141 (185)
T PRK01194         82 LKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA-----------------KIKFA-  141 (185)
T ss_pred             HHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC-----------------ceeeC-
Confidence            9999999999999999776 89999999999999984 5789999999999988652                 23322 


Q ss_pred             ccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442          169 KVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK  227 (230)
Q Consensus       169 ~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~  227 (230)
                          +          .+|.|||||+|.+|+|.+||||++++    ++++|.||..||..
T Consensus       142 ----~----------~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~~  182 (185)
T PRK01194        142 ----D----------IDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYEN  182 (185)
T ss_pred             ----C----------ccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHhh
Confidence                1          37999999999999999999999977    78889999999974

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.98  E-value=6.2e-30  Score=211.64  Aligned_cols=192  Identities=32%  Similarity=0.461  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDA   88 (230)
Q Consensus         9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~   88 (230)
                      .++.|+++|.++|++++++|...|.++++..+.+........+..-+.+..++++..+++++|+|.+++|+++|++++++
T Consensus         3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~   82 (194)
T COG1390           3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI   82 (194)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999999888887777666666666677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442           89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD  168 (230)
Q Consensus        89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~  168 (230)
                      |+.+|+.+.++|.+++.+| +|.. |..|+.+++..+.+++++|++++.|..++.+++.+        .+   ..+    
T Consensus        83 l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~--------~~---~~~----  145 (194)
T COG1390          83 LESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRE--------LK---IGV----  145 (194)
T ss_pred             HHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh--------cc---cch----
Confidence            9999999999999999998 5655 99999999999999999999999999998887653        11   111    


Q ss_pred             ccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442          169 KVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK  227 (230)
Q Consensus       169 ~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~  227 (230)
                        .+++.        .+|.|||+++++||++.+||||++||+.+++.+.|.|++.||++
T Consensus       146 --~~~~~--------~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~  194 (194)
T COG1390         146 --ELGEG--------IDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV  194 (194)
T ss_pred             --hcccc--------CCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence              22221        48999999999999999999999999999999999999999984

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.94  E-value=1e-23  Score=175.71  Aligned_cols=194  Identities=20%  Similarity=0.258  Sum_probs=155.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            3 DADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFL   82 (230)
Q Consensus         3 ~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L   82 (230)
                      +.++++-+++|.+.|..+|+++|++|+.+|+++++    .|+.+.+.+...-..+..++++..+++..|++.+..|..+|
T Consensus         2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll   77 (198)
T PRK01558          2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI   77 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999995    66666655555555566677777778888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCC
Q 041442           83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAP  162 (230)
Q Consensus        83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~  162 (230)
                      .+++.+++.+...+.+.+.+.. +++.|..++..|+..+.   +++++.|+++|.|...+++.+..   .+...+|.   
T Consensus        78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~---  147 (198)
T PRK01558         78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALGNKLKK---  147 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC---
Confidence            9999999866444444445433 44589999999999875   45788999999999998876542   33333332   


Q ss_pred             eeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHh
Q 041442          163 KITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRL  224 (230)
Q Consensus       163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~L  224 (230)
                      .+++..      +        .+|.|||+|.+.||++.+||||+++.+.+.+.+.|.++++|
T Consensus       148 gi~i~~------~--------~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l  195 (198)
T PRK01558        148 GIELKP------F--------KGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI  195 (198)
T ss_pred             CeEEcc------c--------CCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence            355542      1        47999999999999999999999999999999999999987

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=99.90  E-value=7.3e-21  Score=159.06  Aligned_cols=192  Identities=15%  Similarity=0.172  Sum_probs=148.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            3 DADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFL   82 (230)
Q Consensus         3 ~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L   82 (230)
                      ++.+++-+++|.+.|+.+|+.+|.+|+.+|+++++    .++.+.+.+......+..++++..+++..|++.+.+|+.+|
T Consensus         7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l   82 (207)
T PRK01005          7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE   82 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678888999999999999999999999999995    46666665555555555667777777889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhcCC----c----EEEEeccccHHHHHHHHHHHHHHH
Q 041442           83 QAQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLNEK----A----VLLRCREMDRKLVESIVEEAKKEF  153 (230)
Q Consensus        83 ~ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~~~----~----~~v~~~~~D~~~v~~~~~~~~~~~  153 (230)
                      .+++++++.+|..+.++|..- ..+|    .||.+||...+......    +    +...++|.+..-.  +...+.+.+
T Consensus        83 ~aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l  156 (207)
T PRK01005         83 SLKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKL  156 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHH
Confidence            999999999999999999773 4454    88888888766655321    1    2335666555432  333323333


Q ss_pred             HHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCC
Q 041442          154 AEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGK  227 (230)
Q Consensus       154 ~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~  227 (230)
                      ..      ..|++..                 ..|||+|.+.||++.+|||++++++.+|+.+.|.++.+|||+
T Consensus       157 ~~------~gv~~~~-----------------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~  207 (207)
T PRK01005        157 KE------KGVSVGS-----------------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG  207 (207)
T ss_pred             HH------cCeEEec-----------------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence            21      1355541                 269999999999999999999999999999999999999985

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=99.53  E-value=8.5e-12  Score=107.94  Aligned_cols=188  Identities=20%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-----HHH----HHHHHHH--HHHHH---
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLF------EAEKKKIKQE-----YER----KSKQAEA--RRKIE---   69 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~------~~~~~~i~~e-----~~k----~~~~~e~--~~~i~---   69 (230)
                      ...-...++.+|+.+|.+|+.+|+.+++.....+.      ..+..++..+     |+.    -..+...  ...+.   
T Consensus        38 ~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~  117 (255)
T TIGR03825        38 EEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEAN  117 (255)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888888888888888888765433331      1122222222     111    0111100  11110   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHH
Q 041442           70 --YSMQLNAARIKFLQAQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESI  145 (230)
Q Consensus        70 --~S~~~~~~R~~~L~ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~  145 (230)
                        +..+.......+-..+.++++-++.-|..=+... ..++    ..+..|+.+++..+++ +.++|+|+|.|.+.+...
T Consensus       118 ~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~  193 (255)
T TIGR03825       118 AIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQ  193 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHh
Confidence              1111111122222345555555555554444443 3343    5688999999988877 679999999999999887


Q ss_pred             HHHHHHHHHHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHH
Q 041442          146 VEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIR  221 (230)
Q Consensus       146 ~~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~  221 (230)
                      .+.+...++...+   +.|..|+  .             -..|||+|.+++|.  ||+|+++||+.+++.++-.+.
T Consensus       194 ~~~l~~~~~~~~~---i~i~~D~--~-------------l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l~  249 (255)
T TIGR03825       194 KDELQSILPACEH---LAVYPDE--K-------------LPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEALK  249 (255)
T ss_pred             HHHHHhhcCCCCc---eEEEeCC--C-------------CCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHHh
Confidence            7655544432211   2344442  3             34699999999999  699999999999888876654

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK06937 type III secretion system protein; Reviewed

Probab=99.49  E-value=1.1e-11  Score=103.93  Aligned_cols=170  Identities=17%  Similarity=0.211  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK   93 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~   93 (230)
                      .+.|+..|+++|++|...|+++++..+..=.+++..+-..+..         ..+.  ....+.........+++++=++
T Consensus        32 A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~---------e~l~--~~~~~~~~~~~~~e~~l~~Lvl  100 (204)
T PRK06937         32 AEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQA---------ELIL--ETVLQCQEFYRGVEQQMSEVVL  100 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999865443333333322222111         1111  1112222233445566666666


Q ss_pred             HHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCC
Q 041442           94 EAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFL  172 (230)
Q Consensus        94 ~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L  172 (230)
                      .-+++=+..+.     -+.++..++.+++..+.+ +.++|+|+|.|.+.+...+......+++. +  .+.|..|+  .|
T Consensus       101 ~ia~kil~~~~-----~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~~-~--~l~i~~D~--~L  170 (204)
T PRK06937        101 EAVRKILNDYD-----DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEV-G--YLEVVADA--RL  170 (204)
T ss_pred             HHHHHHHhccC-----cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCCC-c--cEEEEeCC--CC
Confidence            65544444332     247888999999998876 58999999999999998776554444321 1  13444453  33


Q ss_pred             CCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHH
Q 041442          173 PPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPE  219 (230)
Q Consensus       173 ~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~  219 (230)
                                   ..|||+|.++.|.  ||+||++||+.+.+.+...
T Consensus       171 -------------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~  202 (204)
T PRK06937        171 -------------DQGGCILETEVGI--IDASLDGQLEALEQAFHST  202 (204)
T ss_pred             -------------CCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence                         3599999999998  6999999998887766543

>PRK09098 type III secretion system protein HrpB; Validated

Probab=99.46  E-value=9.3e-11  Score=100.09  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhc--CCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442           83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLN--EKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ  160 (230)
Q Consensus        83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~--~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~  160 (230)
                      ..++++++-++..++.-+...  +|    ..|-..+.+++..+.  .+.++|+|+|.|.+.+...+......    .|+.
T Consensus       110 ~~e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~  179 (233)
T PRK09098        110 RMRERLAEIVAAAVEQIVLGE--DR----AALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRN  179 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCC
Confidence            357788888888777666543  33    455567777776553  36899999999999999877654433    3332


Q ss_pred             CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHH
Q 041442          161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPE  219 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~  219 (230)
                       ..+.|-.+..|+             .||+++.+..|.|  |+|++++|+.+.+-+...
T Consensus       180 -~~l~Iv~Dp~L~-------------~GgCviET~~G~I--Dasl~~ql~~L~~al~~~  222 (233)
T PRK09098        180 -VPVEVVGDPRLA-------------PGACVCEWDFGVF--DASLDTQLRALRRALARA  222 (233)
T ss_pred             -cceEEEeCCCCC-------------CCCeEEEeCCCeE--ecCHHHHHHHHHHHHHHH
Confidence             234444334454             4999999999984  999999998887766543

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=99.43  E-value=1.6e-10  Score=101.38  Aligned_cols=113  Identities=18%  Similarity=0.302  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 041442           83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQA  161 (230)
Q Consensus        83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~  161 (230)
                      ....++++-++.-|..=|..+..   ..+.++..++.+++..+.+ +.++|+|+|.|.+++.....++...+....   .
T Consensus       163 ~~e~elv~Lal~iaekvi~~~~~---~~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~~---~  236 (281)
T PRK06669        163 SSEEEIVELALDIAKKVIKEISE---NSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNEE---H  236 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCCC---C
Confidence            35666777777777655544433   3568889999999998876 679999999999999998876655554321   2


Q ss_pred             CeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHH
Q 041442          162 PKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLP  218 (230)
Q Consensus       162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p  218 (230)
                      +.|..|+  .|             ..|||+|.+.+|.  ||+|+++||+.+++.+..
T Consensus       237 i~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~tqLe~l~~~L~e  276 (281)
T PRK06669        237 LKIYEDD--AI-------------SKGGCVIETDFGN--IDARIDTQLKQLKEKLLE  276 (281)
T ss_pred             eEEEECC--CC-------------CCCCeEEEcCCCe--eeccHHHHHHHHHHHHHh
Confidence            3454442  33             3499999999888  699999999988877643

>PRK06328 type III secretion system protein; Validated

Probab=99.42  E-value=1.8e-10  Score=97.78  Aligned_cols=172  Identities=14%  Similarity=0.162  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK   93 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~   93 (230)
                      .+.|+..|+++|++|..+|.++++..+..-.+++...-..++....           ..+........-....++++-++
T Consensus        31 A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~-----------~~l~~~~~~~~~~~e~~lv~Lal   99 (223)
T PRK06328         31 AQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQL-----------AFLEEETQKLREQVKEALVPLAI   99 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999988865444433334333322221111           11111111112234466777777


Q ss_pred             HHHHHHHhh-hccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccC
Q 041442           94 EAASKELLN-VSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVF  171 (230)
Q Consensus        94 ~~a~ekL~~-l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~  171 (230)
                      .-|+.=+.. +..++    ..+..++.+++..+.+ +.++|+|+|.|.+++....+++...+.+..+   +.|..|+  .
T Consensus       100 ~ia~kVi~~el~~d~----e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~~~---~~I~~D~--~  170 (223)
T PRK06328        100 ASVKKIIGKELELHP----ETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYADS---LIISPKA--D  170 (223)
T ss_pred             HHHHHHHHHHHhhCH----HHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCCCc---eEEEeCC--C
Confidence            777665554 33333    7788999999988866 5799999999999999877765554543222   4555553  4


Q ss_pred             CCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHH
Q 041442          172 LPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEI  220 (230)
Q Consensus       172 L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I  220 (230)
                      |+             .|||+|.+..|.  ||.|+++||+.+...+...+
T Consensus       171 L~-------------~GgCiIET~~G~--VDasle~ql~~l~~al~~~l  204 (223)
T PRK06328        171 VT-------------PGGCIIETEAGI--INAQLDVQLAALEKAFSTIL  204 (223)
T ss_pred             CC-------------CCCeEEEeCCce--EEecHHHHHHHHHHHHHHHH
Confidence            43             499999999998  49999999988877665444

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=99.23  E-value=6.2e-09  Score=83.94  Aligned_cols=149  Identities=16%  Similarity=0.127  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQ-AQDDAVNA   91 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~-ar~~~i~~   91 (230)
                      -...|+.+|+.+|+.|...|+++++..+..-.+.+..+...+.......           .. ..+...+. ....++ .
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~-----------~~-~~~~~~~~~~e~~l~-~   80 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAE-----------WQ-QEAEQLEASLEERLA-E   80 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHH-H
Confidence            5678999999999999999999997665555444444433333322111           11 11111111 223333 3


Q ss_pred             HHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCcc
Q 041442           92 MKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKV  170 (230)
Q Consensus        92 v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~  170 (230)
                      +...+.+++..-.    ..+.++..++.+++..+.+ +.++|+|+|.|.+.+...+....    ...+   ++|..|+  
T Consensus        81 l~~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~----~~~~---~~i~~D~--  147 (166)
T TIGR02499        81 LVLQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERL----ALEP---WELEPDA--  147 (166)
T ss_pred             HHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHh----ccCC---eEEeeCC--
Confidence            3333334443322    2457888888888887776 68999999999999998876432    1111   2344442  


Q ss_pred             CCCCCCCCCCCCCCCCccceEEEecCCcEE
Q 041442          171 FLPPPPKSADSHEPSCSGGVVVASQDGKIV  200 (230)
Q Consensus       171 ~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~  200 (230)
                      .             -..|||+|.+.+|.|.
T Consensus       148 ~-------------l~~G~c~vet~~G~vd  164 (166)
T TIGR02499       148 S-------------LAPGACVLETESGVVD  164 (166)
T ss_pred             C-------------CCCCCEEEEeCCceee
Confidence            2             3569999999999874

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.16  E-value=5.8e-08  Score=83.02  Aligned_cols=188  Identities=15%  Similarity=0.160  Sum_probs=119.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            2 NDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKF   81 (230)
Q Consensus         2 ~~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~   81 (230)
                      .+++..+.+......+...+++.++.|...+++-++.    -++.+.+.-..+.....+ ........++.+.+.. ..+
T Consensus        38 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~ee----g~q~G~~eG~~~g~~~~~-~~e~~~~li~~~~~~~-~~~  111 (234)
T COG1317          38 EEEELEQALEAKEEELESAAQELQEGIEEGAREGYEE----GFQLGYEEGFEEGQEEGR-VLERLAKLIAEFQAEL-EAL  111 (234)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHH
Confidence            3456778888888899999999999999888888743    223333222221110000 0000001111221111 111


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-C-cEEEEeccccHHHHHHHHHHHHHHHHHhhC
Q 041442           82 L-QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-K-AVLLRCREMDRKLVESIVEEAKKEFAEKTK  158 (230)
Q Consensus        82 L-~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~-~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g  158 (230)
                      . .....+++-++.-+++=|......   -+..|..++.+++..+.. + .++|+|+|.|.+++...+++..    ..++
T Consensus       112 ~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~----~~~~  184 (234)
T COG1317         112 KEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEEL----SLLG  184 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHH----hhcc
Confidence            1 245667777777776666665443   358889999999987765 3 7999999999999999887443    3334


Q ss_pred             CCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHH
Q 041442          159 RQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEI  220 (230)
Q Consensus       159 ~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I  220 (230)
                      +. +.|..|  ..|             .-|||++++..|.|  |-|+++||+.+.+.+.+..
T Consensus       185 ~~-l~l~~D--~~l-------------~~GgC~IeTe~G~i--Dasld~ql~~L~~~~~~~~  228 (234)
T COG1317         185 WR-LELVAD--PAL-------------SPGGCIIETEFGII--DASLDTQLAALKRALLESL  228 (234)
T ss_pred             hh-eeeccC--CCC-------------CCCCeEEEecCccc--cccHHHHHHHHHHHHHhhh
Confidence            32 224334  233             35999999998985  9999999999888877654

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=98.91  E-value=1.3e-06  Score=75.23  Aligned_cols=170  Identities=15%  Similarity=0.198  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM   92 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v   92 (230)
                      -....+.+|+.++.+|..+|..+++.++..++.+....+.....+...+++.++...           +-..+.++.+-+
T Consensus        61 e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a-----------~~~l~~ei~~la  129 (246)
T TIGR03321        61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL-----------SDELRRRTGAEV  129 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            445567788888888888888888877777776666555444443333333332222           223344444555


Q ss_pred             HHHHHHHHhhhccChhhHHHHHHHHHHH--------------HHHhhcCCcEEEE-eccccHHHHHHHHHHHHHHHHHhh
Q 041442           93 KEAASKELLNVSNDKNKYRTVLKGLIVQ--------------SMLRLNEKAVLLR-CREMDRKLVESIVEEAKKEFAEKT  157 (230)
Q Consensus        93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~e--------------a~~~l~~~~~~v~-~~~~D~~~v~~~~~~~~~~~~~~~  157 (230)
                      +..|..-|...... +....++...|.+              ++.. ++..++|+ ..|=+.+....+..    .+...+
T Consensus       130 ~~~A~kil~~~~d~-~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~----~l~~~~  203 (246)
T TIGR03321       130 FAIARKVLTDLADT-DLEERMVDVFVQRLRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRD----TIRETL  203 (246)
T ss_pred             HHHHHHHHHHhcCh-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHH----HHHHHH
Confidence            55554444443222 1333444444321              1111 12234444 23333333333333    333344


Q ss_pred             CCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          158 KRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       158 g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      |.. +.+++..              +++.+|||+|..  |+.++|+|+.++|+.+...+
T Consensus       204 ~~~-v~~~~~v--------------dp~ligGi~l~~--g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       204 GPE-IRLRFQT--------------EPDLIGGIELTA--GGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             CCC-eeEEeee--------------CchhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence            432 3333321              138999999998  99999999999998877653

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=98.87  E-value=1e-06  Score=73.23  Aligned_cols=152  Identities=20%  Similarity=0.313  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM   92 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v   92 (230)
                      -...|+++|+.+|+.|+..|+++++    .+.+.....+...+-.....       .+... ...+..+...-......+
T Consensus        31 ~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~-------ll~~~-~~~~e~l~~~l~~~~~~l   98 (191)
T PF06188_consen   31 QAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANA-------LLQEW-QQQREQLLQQLEEQAEEL   98 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999996    33333333333333221110       11111 123445555556777888


Q ss_pred             HHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCC
Q 041442           93 KEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFL  172 (230)
Q Consensus        93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L  172 (230)
                      +..+.++|..-..++..+..++..|+...   .+...++++|+|.+.+-|..++.+    +. ..+   +++.-|  .+|
T Consensus        99 l~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~----~~-~~~---w~l~~D--~sl  165 (191)
T PF06188_consen   99 LSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE----HP-ALH---WQLQAD--ESL  165 (191)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh----CC-Ccc---eeeccC--CCC
Confidence            88888888665444557888887776554   345789999999999999998863    22 111   345555  455


Q ss_pred             CCCCCCCCCCCCCCccceEEEecCCcEEEe
Q 041442          173 PPPPKSADSHEPSCSGGVVVASQDGKIVLE  202 (230)
Q Consensus       173 ~~~~~~~~~~~~~~~GGvvl~~~dg~i~vd  202 (230)
                      ++             |..++.+..|.+.+|
T Consensus       166 ~~-------------~~l~L~t~~G~~~l~  182 (191)
T PF06188_consen  166 AP-------------DQLKLETANGEFRLD  182 (191)
T ss_pred             CC-------------CceEEEcCCCcEEEC
Confidence            53             889999999997665

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.84  E-value=4.9e-07  Score=77.44  Aligned_cols=104  Identities=10%  Similarity=0.183  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHhh-hccChhhHHHHHHHHHHHHHHhhcC--CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442           84 AQDDAVNAMKEAASKELLN-VSNDKNKYRTVLKGLIVQSMLRLNE--KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ  160 (230)
Q Consensus        84 ar~~~i~~v~~~a~ekL~~-l~~~~~~Y~~~L~~Li~ea~~~l~~--~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~  160 (230)
                      .+..+++-++.-|+.=+.. +..+|    ..+..++.+++..++.  +.++|+|+|.|.+++...+++.      ..   
T Consensus       120 ~~~~ll~La~~iA~~vi~~el~~~p----~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~------~~---  186 (236)
T PRK13386        120 QRDELLDLVEKVTRQVIRCELTLQP----QQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK------VQ---  186 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc------cc---
Confidence            3455666666666555544 34443    6777999999999865  5899999999999998766431      11   


Q ss_pred             CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442          161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL  217 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      .++|..|+  .|.             .|||+|.+..|.  ||.|+++||+.+.+.+.
T Consensus       187 ~~~l~~D~--~l~-------------~GgC~Iet~~g~--iDa~ietRl~~~~~~l~  226 (236)
T PRK13386        187 AWGLVADP--SLS-------------AGECRIVTDTSE--ADAGCEHRLDACMDAVK  226 (236)
T ss_pred             CeEEEeCC--CcC-------------CCCEEEEeCCce--EeeCHHHHHHHHHHHHH
Confidence            14566663  333             599999998887  59999999977655443

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=98.75  E-value=6.1e-07  Score=68.92  Aligned_cols=100  Identities=18%  Similarity=0.299  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHhh-hccChhhHHHHHHHHHHHHH-HhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442           84 AQDDAVNAMKEAASKELLN-VSNDKNKYRTVLKGLIVQSM-LRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ  160 (230)
Q Consensus        84 ar~~~i~~v~~~a~ekL~~-l~~~~~~Y~~~L~~Li~ea~-~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~  160 (230)
                      .++++++-++.-|..=+.. +..+    +..+..+|.+++ ..+.+ +.++|+|+|.|.+.+...+......    .|  
T Consensus        25 ~~~~l~~l~~~iae~vi~~~l~~~----~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~----~~--   94 (128)
T PF02108_consen   25 LEQELVELALAIAEKVIGRELEED----PEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPE----LG--   94 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhh----cC--
Confidence            5566666666666555543 3333    367778888888 44444 5799999999999999887633221    12  


Q ss_pred             CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHH
Q 041442          161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNV  211 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~  211 (230)
                       +++..|+  .|+             .|||+|.+++|.  +|.|+++||+.
T Consensus        95 -~~l~~D~--~l~-------------~G~c~iet~~g~--iD~~i~~ql~~  127 (128)
T PF02108_consen   95 -WELVADP--SLA-------------PGDCRIETEDGI--IDASIETQLEA  127 (128)
T ss_pred             -CEEEecC--CCC-------------CCCEEEEECCee--EEeCHHHHHhc
Confidence             3566663  443             499999998887  59999999964

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.70  E-value=3e-06  Score=72.91  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhc--CCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442           84 AQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLN--EKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ  160 (230)
Q Consensus        84 ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~--~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~  160 (230)
                      ....+++-++.-|+.=+... ..+    ...+..+|.+++..+.  .+.++|+|+|.|..+++..+..   .+. ..|  
T Consensus       133 ie~~Lv~Lal~ia~~vi~~el~~~----~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~---~~~-~~~--  202 (246)
T PRK05687        133 IESRLVQLALELARQVIGQELKTD----PSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGA---ELS-LHG--  202 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccC----HHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhh---HHH-hCC--
Confidence            45566666666666555543 333    3678889999999875  3689999999999999987752   221 222  


Q ss_pred             CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHH
Q 041442          161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLP  218 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p  218 (230)
                       +.|..|+  .|+             .|||+|.+.+|.  ||.|+++||+.+.+.+.+
T Consensus       203 -~~l~~D~--~l~-------------~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~  242 (246)
T PRK05687        203 -WRLLADP--SLH-------------RGGCRISAEEGD--VDASLETRWQEVCRLLAP  242 (246)
T ss_pred             -eEEEeCC--CcC-------------CCCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence             4566664  343             599999999888  599999999998887654

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=98.48  E-value=6.5e-05  Score=62.49  Aligned_cols=167  Identities=19%  Similarity=0.225  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           15 RFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKE   94 (230)
Q Consensus        15 ~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~   94 (230)
                      ..++..|+..|..|...|+..|+.++..=.++....-..         ++.+.+  +.+.-+..+.+-...+.+.+=+++
T Consensus        33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e---------~~A~ll--aqa~a~v~r~~a~LE~~l~~LVl~  101 (207)
T PF06635_consen   33 AAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAE---------QAARLL--AQATAEVARYLAGLEQELAELVLE  101 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999975554433332221111         111112  233233333344445777777777


Q ss_pred             HHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCccCCC
Q 041442           95 AASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLP  173 (230)
Q Consensus        95 ~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~~L~  173 (230)
                      -+++=|-.|+.+     ++|.+.+.+++..+.. ..++|+|.|.|.+.+...+..+    .+..|.  .++.|..+.-|+
T Consensus       102 ~Vr~ILg~fd~~-----ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~----~~~~g~--~~i~I~aDp~La  170 (207)
T PF06635_consen  102 IVRKILGEFDPD-----ELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAAL----EGRPGR--PKIRIVADPRLA  170 (207)
T ss_pred             HHHHHHhcCChH-----HHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhh----hccCCC--CceeeecCCCCC
Confidence            777777777654     7888888888887766 4799999999999998877544    222233  245555444555


Q ss_pred             CCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHH
Q 041442          174 PPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLP  218 (230)
Q Consensus       174 ~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p  218 (230)
                                   .|.+||.|+-|.|  |-+|++-|+.++.-+.|
T Consensus       171 -------------~~~Cvlese~G~V--dagL~aQL~ALr~a~~~  200 (207)
T PF06635_consen  171 -------------AGQCVLESEFGVV--DAGLDAQLRALRLAFGP  200 (207)
T ss_pred             -------------CCCeeeecccchh--hccHHHHHHHHHHHhcc
Confidence                         4999999999994  99999999888877765

The function of this family is unclear.; GO: 0009877 nodulation

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=98.40  E-value=0.00012  Score=61.09  Aligned_cols=110  Identities=10%  Similarity=0.050  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHhhcC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCC
Q 041442           84 AQDDAVNAMKEAASKELLNV-SNDKNKYRTVLKGLIVQSMLRLNE-KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQA  161 (230)
Q Consensus        84 ar~~~i~~v~~~a~ekL~~l-~~~~~~Y~~~L~~Li~ea~~~l~~-~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~  161 (230)
                      .+.++++=++.-++.=+... ..++   ...+..++.+++..+.+ +.++|+|+|.|.+.+...+.+.....    |.. 
T Consensus        85 ~~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~----~~~-  156 (199)
T PRK06032         85 METEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARES----GFE-  156 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhc----CcC-
Confidence            34455554455444444333 3332   23577888888887766 56999999999999998887554333    221 


Q ss_pred             CeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          162 PKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      +.+.+-.+..|+             .||++|...+|.+  |+|+.+++..+.+-+
T Consensus       157 ~~~~l~~D~~L~-------------~G~c~vet~~G~v--d~d~~~~~~~I~~al  196 (199)
T PRK06032        157 GRLVVLADPDMA-------------PGDCRLEWADGGV--VRDRAAIEARIEEAV  196 (199)
T ss_pred             ccEEEeeCCCCC-------------CCCeEEEeCCCeE--ecCHHHHHHHHHHHh
Confidence            345554444554             4999999999985  888888887776544

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=98.20  E-value=5.7e-05  Score=61.39  Aligned_cols=92  Identities=18%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDA   88 (230)
Q Consensus         9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~   88 (230)
                      .+..-...++.+|+.++.+|..+|..+++..+..++++.+.....           ......+.+..+.++.+...|+++
T Consensus        74 ~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~-----------~~~~a~~~ie~Ek~~a~~elk~ei  142 (167)
T PRK08475         74 EKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIEN-----------LIKSFEELMEFEVRKMEREVVEEV  142 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556778889999999999999999876666655444333222           222344666677778889999999


Q ss_pred             HHHHHHHHHHHHhhhccChhhHHHHHHH
Q 041442           89 VNAMKEAASKELLNVSNDKNKYRTVLKG  116 (230)
Q Consensus        89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~  116 (230)
                      ++++|+.   +|.+++.+  .|.+++.+
T Consensus       143 i~~~~~~---~~~~l~~~--~y~~~~~~  165 (167)
T PRK08475        143 LNELFES---KKVSLNQQ--EYVNILLK  165 (167)
T ss_pred             HHHHHHh---hhcCCCHH--HHHHHHhc
Confidence            9999999   99999876  69998864

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=97.98  E-value=0.0066  Score=52.52  Aligned_cols=165  Identities=14%  Similarity=0.155  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           15 RFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKE   94 (230)
Q Consensus        15 ~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~   94 (230)
                      ..-+.+|+.++.+|..+|..+++.++..++.+.+..+.....+...+++.++           ....-..+.++.+-++.
T Consensus        63 e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek-----------~~a~~~L~~~v~~la~~  131 (250)
T PRK14474         63 RQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREK-----------QEFFKALQQQTGQQMVK  131 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence            3446677888888888888888777777666555544443333332322222           22233345666666777


Q ss_pred             HHHHHHhhhccChhhHHHHHHHHHHHH----------HH--hhcCCcEEEEe----ccccHHHHHHHHHHHHHHHHH-hh
Q 041442           95 AASKELLNVSNDKNKYRTVLKGLIVQS----------ML--RLNEKAVLLRC----REMDRKLVESIVEEAKKEFAE-KT  157 (230)
Q Consensus        95 ~a~ekL~~l~~~~~~Y~~~L~~Li~ea----------~~--~l~~~~~~v~~----~~~D~~~v~~~~~~~~~~~~~-~~  157 (230)
                      -|..-|....... ....++..+|.+-          +.  .-++..++|+.    .|.+...+...+.       . ..
T Consensus       132 ~A~kiL~~~~d~~-~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~-------~~~~  203 (250)
T PRK14474        132 IIRAALADLANAT-LEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLH-------QTHL  203 (250)
T ss_pred             HHHHHHHhhcCHH-HHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHH-------HHhc
Confidence            7766666654332 4555555555221          11  01223344443    2333444444333       3 33


Q ss_pred             CCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442          158 KRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQ  215 (230)
Q Consensus       158 g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~  215 (230)
                      |.. +.+.+..      +        ++.++|+-|..  |+-.|.+||+..|+..-..
T Consensus       204 ~~~-~~~~f~~------~--------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~  244 (250)
T PRK14474        204 IPG-TDIHFVT------S--------PELICGIELKT--EGYKIAWTLAEYLDALESQ  244 (250)
T ss_pred             CCC-Cceeeec------C--------cccccCeEEec--CCceEeccHHHHHHHHHHH
Confidence            332 3444432      1        37899999997  7777899999999766444

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=96.94  E-value=0.0095  Score=48.86  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=28.1

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL  217 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++++|||++..  |..++|.|+.++|+.+...+.
T Consensus       147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL  178 (179)
T ss_pred             HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence            48999999997  889999999999998877653

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=96.86  E-value=0.11  Score=43.00  Aligned_cols=171  Identities=16%  Similarity=0.200  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 041442            4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIE--------YSMQLN   75 (230)
Q Consensus         4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~--------~S~~~~   75 (230)
                      +++.++.+.-.+.|+.+|+.+|++|..+|.++++.+...++......+..+..+....+..+.+..        ++.+..
T Consensus         9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~   88 (198)
T PRK03963          9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLE   88 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888899999999999999999999999888888877766665554444333333322222        233333


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHhh----hccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHH
Q 041442           76 AARIKFLQ----AQDDAVNAMKEAASKELLN----VSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVE  147 (230)
Q Consensus        76 ~~R~~~L~----ar~~~i~~v~~~a~ekL~~----l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~  147 (230)
                      .++.++.+    .-..++..++.++...|..    +..++.+. .++..++.+....++  .+.+.+.+. ..    +  
T Consensus        89 ~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~-~~~~~~~~~~~~~~~--~~~i~~~~~-~~----~--  158 (198)
T PRK03963         89 AVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERTL-KLIDSRLEEIRDELG--DVEIELGEP-IE----T--  158 (198)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEccccH-HHHHHHHHHHHHHhC--CeEEEECCC-CC----c--
Confidence            34433333    1334555666666555532    22222122 455555544444333  445555421 00    0  


Q ss_pred             HHHHHHHHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHH
Q 041442          148 EAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPE  219 (230)
Q Consensus       148 ~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~  219 (230)
                              .     |.+.+.                 +..|||++-+   +  ++.-|+...+.+...+...
T Consensus       159 --------~-----GGvil~-----------------s~~g~i~~dn---T--~e~~l~~~~~~~~~~i~~~  195 (198)
T PRK03963        159 --------I-----GGVIVE-----------------TKDGTIRVDN---T--FEARMERLESELRAKIAKA  195 (198)
T ss_pred             --------c-----ceEEEE-----------------eCCCCEEEeC---c--HHHHHHHHHHHhHHHHHHH
Confidence                    1     234443                 2248887764   3  5778888877777665443

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=96.76  E-value=0.11  Score=38.93  Aligned_cols=76  Identities=17%  Similarity=0.140  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQ   85 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar   85 (230)
                      -+.--..++.+|+.++.+|+..|..+++..+..++.+.......-.++...+++..+...++.+..+...-.+.++
T Consensus        11 aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~   86 (103)
T PRK08404         11 AEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAE   86 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567788888888888888888887777777666655555444445555555555555555555444444443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=96.64  E-value=0.33  Score=40.80  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEAR   65 (230)
Q Consensus         5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~   65 (230)
                      +.-...+.-...|+.+|+.+|++|+.+|+.+++    +++.....++..+..+....+++.
T Consensus        20 eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~   76 (207)
T PRK01005         20 ETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQA   76 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777889999999999999999998874    455555555555544443333333

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=96.60  E-value=0.054  Score=47.40  Aligned_cols=31  Identities=32%  Similarity=0.499  Sum_probs=27.9

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      ++++|||+|.-  |..++|+|+.++|+.+...+
T Consensus       239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L  269 (271)
T PRK13430        239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL  269 (271)
T ss_pred             ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence            48999999998  99999999999999887765

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=96.50  E-value=0.04  Score=51.53  Aligned_cols=31  Identities=39%  Similarity=0.545  Sum_probs=27.9

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      ++++|||+|.-  |..++|.|+.+||+.+...+
T Consensus       413 psLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l  443 (445)
T PRK13428        413 PELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL  443 (445)
T ss_pred             chhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence            48999999997  99999999999999887654

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=96.46  E-value=0.33  Score=39.42  Aligned_cols=95  Identities=9%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK   93 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~   93 (230)
                      ....+.+|+.++.+|..+|..+++..+..++......+.....+....           ...+....+-..+.++++.++
T Consensus        76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~-----------i~~e~~~a~~~l~~qi~~la~  144 (174)
T PRK07352         76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAAD-----------LSAEQERVIAQLRREAAELAI  144 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence            445578888888888888888887666665544433333322222212           222222333445677788888


Q ss_pred             HHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442           94 EAASKELLNVSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        94 ~~a~ekL~~l~~~~~~Y~~~L~~Li~e  120 (230)
                      ..|...|..-..++ ....++.++|.+
T Consensus       145 ~~A~kil~~~l~~~-~~~~li~~~i~~  170 (174)
T PRK07352        145 AKAESQLPGRLDED-AQQRLIDRSIAN  170 (174)
T ss_pred             HHHHHHHHhHcCHH-HHHHHHHHHHHh
Confidence            88887776644332 455555555543

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=96.42  E-value=0.17  Score=41.77  Aligned_cols=61  Identities=10%  Similarity=0.126  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEA   64 (230)
Q Consensus         4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~   64 (230)
                      .++.+..+.-.+.|+.+|+.+|++|..+|+++++..+..+..+....+....++....+.+
T Consensus         8 ~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~L   68 (185)
T PRK01194          8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANI   68 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4667888888999999999999999999999998877777766666555555554444443

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=96.31  E-value=0.41  Score=40.16  Aligned_cols=97  Identities=15%  Similarity=0.067  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNA   91 (230)
Q Consensus        12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~   91 (230)
                      .-.+..+++|+.+|.+|...|.++++..+..++.+....+.........++           ..+.+...-..+.++.+-
T Consensus       103 ~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~I-----------e~Ek~~a~~~Lk~ei~~l  171 (205)
T PRK06231        103 ENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEI-----------EKERRELKEQLQKESVEL  171 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence            345667778888888888888888876666655443333322222221111           122222233445666666


Q ss_pred             HHHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442           92 MKEAASKELLNVSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        92 v~~~a~ekL~~l~~~~~~Y~~~L~~Li~e  120 (230)
                      +..-|..-|.+-.. +.....++.+.|.+
T Consensus       172 Av~iA~kiL~k~ld-~~~~~~lI~~~i~~  199 (205)
T PRK06231        172 AMLAAEELIKKKVD-REDDDKLVDEFIRE  199 (205)
T ss_pred             HHHHHHHHHHhhCC-HHHHHHHHHHHHHH
Confidence            66666666655332 22566666666644

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=96.29  E-value=0.44  Score=39.10  Aligned_cols=96  Identities=19%  Similarity=0.122  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM   92 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v   92 (230)
                      -....+++|+.++.+|...|..+++..+..++.+....+.........++           ..+.+...-..+.++.+-+
T Consensus        80 e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~i-----------e~Ek~~a~~~l~~ei~~la  148 (184)
T CHL00019         80 KARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETI-----------RFEQQRAINQVRQQVFQLA  148 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence            34567888888889999888888877776666554444333322222222           2222233344567777777


Q ss_pred             HHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442           93 KEAASKELLNVSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~e  120 (230)
                      +..|..-|.+... ++....++...|.+
T Consensus       149 v~~A~kil~~~ld-~~~~~~lid~~i~~  175 (184)
T CHL00019        149 LQRALGTLNSCLN-NELHLRTINANIGL  175 (184)
T ss_pred             HHHHHHHHHhHcC-HHHHHHHHHHHHHH
Confidence            7877777766542 22455555555544

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=96.14  E-value=0.56  Score=38.07  Aligned_cols=96  Identities=21%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM   92 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v   92 (230)
                      -....+.+|+.++.+|...|..+++..+..++.+....+....+....+++..+           ..-+-..+.++.+-+
T Consensus        72 e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~-----------~~a~~el~~ei~~lA  140 (173)
T PRK13460         72 DYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAK-----------GKALSQLQNQIVEMT  140 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            345667888888888888888888766666554444333322222222222111           112233456666666


Q ss_pred             HHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442           93 KEAASKELLNVSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~e  120 (230)
                      +.-|..-|.+-.. +.....++...|.+
T Consensus       141 ~~~a~kil~~~l~-~~~~~~lid~~i~~  167 (173)
T PRK13460        141 ITIASKVLEKQLK-KEDYKAFIETELAK  167 (173)
T ss_pred             HHHHHHHHHHHCC-HHHHHHHHHHHHHH
Confidence            7767666655442 22455555555544

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=96.10  E-value=0.11  Score=42.60  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL  217 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++++|||++.-  |..++|.|+.++|+.+...+.
T Consensus       143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~  174 (184)
T PRK13434        143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML  174 (184)
T ss_pred             hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            48999999998  889999999999999888774

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=96.01  E-value=0.34  Score=40.33  Aligned_cols=34  Identities=35%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus         4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      .++-.+.+.-.+.|+.+|+++|++|+.+|+++++
T Consensus        14 ~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe   47 (198)
T PRK01558         14 KDGLEEAERLANEIILEAKEEAEEIIAKAEEEAK   47 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677788899999999999999999999985

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=95.95  E-value=0.48  Score=35.64  Aligned_cols=48  Identities=29%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYE   56 (230)
Q Consensus         9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~   56 (230)
                      +...-.+.|..+|+++|.+|+.+|+.++...+..+++.....+..+..
T Consensus        25 eAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~   72 (108)
T COG2811          25 EAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAE   72 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445667777777788888777777776666666665555544433

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=95.92  E-value=0.68  Score=37.14  Aligned_cols=99  Identities=13%  Similarity=0.140  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAV   89 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i   89 (230)
                      +..-.+..+.+|+.+|.+|+..|..+++..+..++.....+.....+....+++..+           ....-..+.++.
T Consensus        61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek-----------~~a~~~L~~~i~  129 (164)
T PRK14473         61 AKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQER-----------QRMLSELKSQIA  129 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            344456677888888888888888888766666655544443333222222222221           122233445556


Q ss_pred             HHHHHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442           90 NAMKEAASKELLNVSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        90 ~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~e  120 (230)
                      +-++.-|..-|..-. +++.+..++...|.+
T Consensus       130 ~la~~~a~kil~~~l-~~~~~~~li~~~i~~  159 (164)
T PRK14473        130 DLVTLTASRVLGAEL-QARGHDALIAESLAA  159 (164)
T ss_pred             HHHHHHHHHHHHhHc-CHHHHHHHHHHHHHh
Confidence            666666655454322 233466555555543

>PRK15322 invasion protein OrgB; Provisional

Probab=95.89  E-value=0.86  Score=38.04  Aligned_cols=159  Identities=13%  Similarity=0.112  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM   92 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v   92 (230)
                      -...+.++|+.+|.+|..+|+.|++.-...-..       .-|..-..++...  +      ..-+...-..+.++..+|
T Consensus        13 ~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~-------~GYq~Gl~qa~~~--l------a~~~a~~~~l~~~l~~~i   77 (210)
T PRK15322         13 SAERLEQQARRRAKRILRQAEEEAETLRMYAYQ-------EGYEQGMIDALQQ--V------AAYLTDNQTMAWKWMEKI   77 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999998643333222       2233222221111  1      111111122234677777


Q ss_pred             HHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcC--CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecCcc
Q 041442           93 KEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNE--KAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKV  170 (230)
Q Consensus        93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~--~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~~~  170 (230)
                      -+.++.-|...-.+|    ++|-.++.+=+..++.  +++.|++.+.-.+...++-.    .+.+..+   +++.+..  
T Consensus        78 e~~~r~lls~~Ld~p----d~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~----~l~e~w~---~~~~i~y--  144 (210)
T PRK15322         78 QIYARELFSAAVDHP----ETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMV----LLMENWP---GTFNLKY--  144 (210)
T ss_pred             HHHHHHHHHHHccCH----HHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHH----HHHHhcC---CCeEEEE--
Confidence            777777776666666    5666666654443332  56778876655554444433    2233222   3333331  


Q ss_pred             CCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442          171 FLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQ  215 (230)
Q Consensus       171 ~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~  215 (230)
                                    .-.-+||+++  |.-++..+=+.-++.+-..
T Consensus       145 --------------hd~~rFV~~~--g~qIaEFsPq~~v~~a~~~  173 (210)
T PRK15322        145 --------------HQEQRFIMSC--GDQIAEFSPEQFVETAVGV  173 (210)
T ss_pred             --------------cCCCceEEEe--CCchhccCHHHHHHHHHHH
Confidence                          1236788887  6666677666666555443

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=95.85  E-value=0.8  Score=37.52  Aligned_cols=47  Identities=23%  Similarity=0.235  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKK   50 (230)
Q Consensus         4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~   50 (230)
                      +++.++.+.-++.|+.+|+.++++|..+|+++++..+..........
T Consensus         8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e   54 (188)
T PRK02292          8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAERE   54 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888999999999999999999999876655554444433

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.67  E-value=0.85  Score=37.24  Aligned_cols=37  Identities=32%  Similarity=0.310  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            8 RQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLF   44 (230)
Q Consensus         8 ~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~   44 (230)
                      ++.+.-++.|+.+|+++++.|..++.+++........
T Consensus         4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~   40 (198)
T PF01991_consen    4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEII   40 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444443333333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=95.64  E-value=0.84  Score=42.77  Aligned_cols=96  Identities=13%  Similarity=0.040  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMK   93 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~   93 (230)
                      -+.++++|+.++.+|..+|+++++..+..++.+....+.........+++.+++           ..+-..|.++.+-++
T Consensus        58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~-----------~a~~elr~ei~~lAv  126 (445)
T PRK13428         58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRA-----------QLTRQLRLELGHESV  126 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            445778888888888888888887655555544333333222222222222221           122334556666666


Q ss_pred             HHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442           94 EAASKELLNVSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        94 ~~a~ekL~~l~~~~~~Y~~~L~~Li~e  120 (230)
                      ..|.+-|.+-..++.....++...|.+
T Consensus       127 ~~A~kil~~~l~d~~~~~~lId~~i~~  153 (445)
T PRK13428        127 RQAGELVRNHVADPAQQSATVDRFLDE  153 (445)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            666666654222221344555555533

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=95.55  E-value=0.95  Score=36.10  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM   92 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v   92 (230)
                      -....+.+|+.++.+|..+|+.+++..+..++.+..............+++           .+.....-..+.++.+-+
T Consensus        61 e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~-----------~e~~~a~~~l~~ei~~lA  129 (159)
T PRK13461         61 KNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQ-----------REKEKAEYEIKNQAVDLA  129 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence            346677788888888888888888766666555444433322222221211           112222333455556666


Q ss_pred             HHHHHHHHhhhccChhhHHHHHHHHHH
Q 041442           93 KEAASKELLNVSNDKNKYRTVLKGLIV  119 (230)
Q Consensus        93 ~~~a~ekL~~l~~~~~~Y~~~L~~Li~  119 (230)
                      +.-|..-|..... ++....++...|.
T Consensus       130 ~~~a~kil~~~~~-~~~~~~li~~~i~  155 (159)
T PRK13461        130 VLLSSKALEESID-ESEHRRLIKDFIS  155 (159)
T ss_pred             HHHHHHHHHhHcC-HHHHHHHHHHHHh
Confidence            6666555555432 2245555554443

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=95.36  E-value=0.36  Score=39.39  Aligned_cols=32  Identities=31%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL  217 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++++||+++..  |.-++|.|+.++|+.+...++
T Consensus       146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence            37899999997  888899999999998887764

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=95.33  E-value=0.19  Score=41.21  Aligned_cols=31  Identities=23%  Similarity=0.485  Sum_probs=27.0

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      .+.+||+++..  |..++|.|+.++|.++...+
T Consensus       147 ~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l  177 (178)
T COG0712         147 PSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL  177 (178)
T ss_pred             HHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence            48999999998  99999999999998876543

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=95.19  E-value=0.77  Score=32.86  Aligned_cols=32  Identities=22%  Similarity=0.123  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQ   42 (230)
Q Consensus        11 ~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~   42 (230)
                      +.-...++.+|+.++.+|+..|..+++.....
T Consensus         8 e~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~   39 (85)
T TIGR02926         8 EEDAEELIEEAEEERKQRIAEAREEARELLEE   39 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455667777777777777777776543333

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=95.18  E-value=1.4  Score=35.80  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA   46 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~   46 (230)
                      -+..+.+|+.++.+|...|+++++..+..++.+
T Consensus        75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~  107 (175)
T PRK14472         75 NRELLAKADAEADKIIREGKEYAEKLRAEITEK  107 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777777777777777776555444433

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=95.01  E-value=1.4  Score=34.87  Aligned_cols=96  Identities=14%  Similarity=0.032  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVN   90 (230)
Q Consensus        11 ~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~   90 (230)
                      ..-....+.+|+.++.+|...|..+++..+..++......+....+....+++           .+.....-..+..+.+
T Consensus        58 ~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~-----------~e~~~a~~~l~~~~~~  126 (156)
T PRK05759         58 QAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIE-----------QERKRAREELRKQVAD  126 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            33456677788888888888888888665555554433333222222211111           1122223344566666


Q ss_pred             HHHHHHHHHHhhhccChhhHHHHHHHHH
Q 041442           91 AMKEAASKELLNVSNDKNKYRTVLKGLI  118 (230)
Q Consensus        91 ~v~~~a~ekL~~l~~~~~~Y~~~L~~Li  118 (230)
                      -++..|..-|..... +.....++...|
T Consensus       127 lA~~~a~k~l~~~~d-~~~~~~~i~~~i  153 (156)
T PRK05759        127 LAVAGAEKILGRELD-AAAQSDLIDKLI  153 (156)
T ss_pred             HHHHHHHHHHHhHcC-HHHHHHHHHHHH
Confidence            666666666655432 223445554444

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=94.93  E-value=1.6  Score=35.05  Aligned_cols=34  Identities=18%  Similarity=-0.027  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLF   44 (230)
Q Consensus        11 ~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~   44 (230)
                      ..-.+..+.+|+.++.+|...|+++++..+..++
T Consensus        62 ~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~   95 (164)
T PRK14471         62 QADNERLLKEARAERDAILKEAREIKEKMIADAK   95 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556777888888888888777754444433

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=94.71  E-value=1.6  Score=34.16  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA   46 (230)
Q Consensus        12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~   46 (230)
                      .-....+.+|+.++.+|...|..+++..+..++.+
T Consensus        50 ~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~   84 (147)
T TIGR01144        50 KKAQVILKEAKDEAQEIIENANKRGSEILEEAKAE   84 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466777888888888888888876555554443

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=94.59  E-value=2.1  Score=35.00  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041442           17 IRQEAEEKANEISVSAEEEFNIE   39 (230)
Q Consensus        17 I~~eA~eka~eI~~~A~ee~~~e   39 (230)
                      -+.+|+.++.+|+..|..+++..
T Consensus        87 ~L~~A~~ea~~Ii~~A~~~a~~~  109 (184)
T PRK13455         87 KQREVQEQADRIVAAAKDEAQAA  109 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666665433

>PRK00106 hypothetical protein; Provisional

Probab=94.46  E-value=3.6  Score=39.52  Aligned_cols=23  Identities=30%  Similarity=0.331  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041442           15 RFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        15 ~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      ..|+.+|+.+|++|..+|+.+++
T Consensus        45 ~~IleeAe~eAe~I~keA~~EAk   67 (535)
T PRK00106         45 VNLRGKAERDAEHIKKTAKRESK   67 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666553

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=94.40  E-value=2.3  Score=34.55  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEK   48 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~   48 (230)
                      -+..+.+|+.++.+|..+|+.+++..+..++.+..
T Consensus        75 ~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~  109 (173)
T PRK13453         75 NKQKLKETQEEVQKILEDAKVQARQQQEQIIHEAN  109 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677777777777777777655555544433

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=94.03  E-value=1.2  Score=36.05  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=26.9

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      ++.+||+++..  |...+|+|+.++|+.....+
T Consensus       145 ~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l  175 (177)
T PRK05758        145 PSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL  175 (177)
T ss_pred             hHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence            37899999998  77889999999998887665

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=93.92  E-value=3.4  Score=34.74  Aligned_cols=122  Identities=17%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAM   92 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v   92 (230)
                      -..-|++.|..||.+|...|..+-..-+... +.+.++++.....+           +-...++..-.-|-.-.++...+
T Consensus        42 ~s~~il~~A~rkA~~I~q~A~~~~~~ll~qa-qqqad~L~~~~~~~-----------~E~~~L~qHV~wLve~e~lE~sL  109 (224)
T PRK15354         42 VSHAIVSSAYRKAEKIIRDAYRYQREQKVEQ-QQELACLRKNTLEK-----------MEVEWLEQHVKHLQEDENQFRSL  109 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHH
Confidence            3457899999999999998887753222211 11112222211111           01111122222233333333334


Q ss_pred             HHHHHHHHhhh--------ccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHH
Q 041442           93 KEAASKELLNV--------SNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIV  146 (230)
Q Consensus        93 ~~~a~ekL~~l--------~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~  146 (230)
                      ...++++|..-        ....+--.-+...|-.+......++.++++|.|...+.+...+
T Consensus       110 V~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~af  171 (224)
T PRK15354        110 VDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETF  171 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHH
Confidence            44444443331        1111122345566667777777778999999999998776543

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=93.89  E-value=3.1  Score=34.90  Aligned_cols=30  Identities=20%  Similarity=0.111  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQ   42 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~   42 (230)
                      -.+..+.+|+.++.+|...|+.+++.+...
T Consensus       109 ~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~  138 (204)
T PRK09174        109 AYEQELAQARAKAHSIAQAAREAAKAKAEA  138 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777777777777666443333

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=93.74  E-value=1.7  Score=35.14  Aligned_cols=30  Identities=27%  Similarity=0.470  Sum_probs=25.8

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQ  215 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~  215 (230)
                      ++.+||+++..  |...+|.|+.++|+.+...
T Consensus       142 ~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~  171 (172)
T TIGR01145       142 KDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ  171 (172)
T ss_pred             HHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence            37899999997  8888999999999887654

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK09098 type III secretion system protein HrpB; Validated

Probab=93.65  E-value=4.1  Score=34.85  Aligned_cols=52  Identities=19%  Similarity=0.154  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYE   56 (230)
Q Consensus         5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~   56 (230)
                      ++-.+.....+.|+.+|+++|++|..+|+++|+..+..=.+++..+...++.
T Consensus        43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~   94 (233)
T PRK09098         43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWH   94 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666677777777777777777777765554444555554444433

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=93.44  E-value=3.2  Score=33.01  Aligned_cols=35  Identities=9%  Similarity=-0.066  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA   46 (230)
Q Consensus        12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~   46 (230)
                      .-.+..+.+|+.++.+|...|.++++..+..++.+
T Consensus        77 ~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~  111 (156)
T CHL00118         77 KQYEQELSKARKEAQLEITQSQKEAKEIVENELKQ  111 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777777777776554444433

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=93.28  E-value=3.6  Score=33.12  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEFNI   38 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~~~   38 (230)
                      .+..+.+|+.++.+|..+|..+++.
T Consensus        67 ~e~~L~~A~~ea~~Ii~~A~~~a~~   91 (167)
T PRK14475         67 VKAEREEAERQAAAMLAAAKADARR   91 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666643

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=93.14  E-value=7.8  Score=37.06  Aligned_cols=23  Identities=30%  Similarity=0.156  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041442           15 RFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        15 ~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      ..++.+|+.+|+.|..+|+.+++
T Consensus        24 ~~~l~~Ae~eAe~i~keA~~eAk   46 (514)
T TIGR03319        24 EKKLGSAEELAKRIIEEAKKEAE   46 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555543

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=92.96  E-value=4  Score=32.72  Aligned_cols=26  Identities=8%  Similarity=0.010  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           12 QMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        12 ~m~~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      .-.+..+.+|+.++.+|..+|.+.++
T Consensus        59 ~e~e~~L~~Ar~EA~~Ii~~A~~~a~   84 (154)
T PRK06568         59 EQTNAQIKKLETLRSQMIEESNEVTK   84 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667777777777777777764

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=92.83  E-value=3.3  Score=32.50  Aligned_cols=41  Identities=27%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQ   53 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~   53 (230)
                      -.+.++++|+.+|..+...+..++..+..+++++....+..
T Consensus        63 e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~  103 (141)
T PRK08476         63 EIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELES  103 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555554444544444443333

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=92.53  E-value=2.7  Score=34.07  Aligned_cols=31  Identities=35%  Similarity=0.461  Sum_probs=26.8

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      ++.+||+++..  |...+|+|+.++|+.+...+
T Consensus       147 ~sligG~~i~~--~~~~iD~Si~~~L~~l~~~l  177 (181)
T PRK13429        147 PSLIGGVVVKI--GDKVLDASVRTQLRRLKETL  177 (181)
T ss_pred             hhhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            37899999998  77889999999998887665

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=92.24  E-value=5.1  Score=32.18  Aligned_cols=25  Identities=32%  Similarity=0.234  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      -.+.-+.+|+.++.+|+..|..++.
T Consensus        62 ~~~~~l~~Ar~~a~~Ii~~A~~~a~   86 (161)
T COG0711          62 EYEQELEEAREQASEIIEQAKKEAE   86 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777777778777777774

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=92.17  E-value=1.8  Score=35.16  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=23.2

Q ss_pred             ccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHH
Q 041442          187 SGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRK  222 (230)
Q Consensus       187 ~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~  222 (230)
                      +||+++..  |..++|.|+  .|+.+...+..-|.+
T Consensus       143 IGG~ii~i--gd~v~D~s~--~l~~~~~~~~~~~~~  174 (176)
T PRK08474        143 YDGIKVEV--DDLGVEVSF--SKDRLKNQLIEYILK  174 (176)
T ss_pred             CCCEEEEE--CCEEEEeee--eHHHHHHHHHHHHHh
Confidence            99999998  999999954  566666655544433

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=92.03  E-value=5.2  Score=31.81  Aligned_cols=38  Identities=24%  Similarity=0.226  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHH
Q 041442           83 QAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQS  121 (230)
Q Consensus        83 ~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea  121 (230)
                      ..|..+.+-++..|..-|..-. ++.....++...|.+.
T Consensus       117 el~~~~~~lA~~~A~kil~~~l-~~~~~~~li~~~i~~~  154 (159)
T PRK09173        117 AVRSSAVDLAIAAAEKLLAEKV-DAKAASELFKDALAQV  154 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence            3455566666666655555433 3335667777776554

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.03  E-value=0.041  Score=44.45  Aligned_cols=33  Identities=24%  Similarity=0.529  Sum_probs=11.8

Q ss_pred             CCCCCCccceEEEecCCcEEEeccHHHHHHHHHhh
Q 041442          181 SHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQ  215 (230)
Q Consensus       181 ~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~  215 (230)
                      ..+++++|||++..  |+.++|.|+.++|+.+...
T Consensus       139 ~vD~sLigG~~i~~--~~~~iD~Sv~~~L~~l~~~  171 (172)
T PF00213_consen  139 KVDPSLIGGFIIEV--GDKVIDASVKSRLEQLKKE  171 (172)
T ss_dssp             --------------------TTTTTTTTTTTT-TT
T ss_pred             EEccccCcEEEEEE--CCEEEehhHHHHHHHHHhc
Confidence            34578999999997  8888999999999776554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=91.96  E-value=2.4  Score=34.68  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=27.0

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHhhcH
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNL  217 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++.+||+++..  |...+|.|+.++|+.....+.
T Consensus       149 ~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~  180 (184)
T CHL00119        149 PSLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD  180 (184)
T ss_pred             hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            37899999997  888899999999987776553

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=91.88  E-value=4.5  Score=33.14  Aligned_cols=32  Identities=16%  Similarity=0.089  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQL   43 (230)
Q Consensus        12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~   43 (230)
                      .-.+.++.+|+.++.+|+..|.++++..+..+
T Consensus        86 ~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~  117 (181)
T PRK13454         86 KAYNKALADARAEAQRIVAETRAEIQAELDVA  117 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777777777766665444443

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=91.80  E-value=6.7  Score=32.62  Aligned_cols=116  Identities=17%  Similarity=0.235  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           20 EAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKE   99 (230)
Q Consensus        20 eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~~a~ek   99 (230)
                      .++...+.|...|+++++    .+..    ....++++...++....+..........+.+.-..++.++..+..+++.+
T Consensus         3 ~~e~~i~~I~~~a~eeak----~I~~----eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~   74 (194)
T COG1390           3 ELEKLIKKILREAEEEAE----EILE----EAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRK   74 (194)
T ss_pred             cHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677788888877764    2221    12222222211111111112234444556666777778888877777666


Q ss_pred             HhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHH
Q 041442          100 LLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFA  154 (230)
Q Consensus       100 L~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~  154 (230)
                      +..      .++.+|...+...-..|..    +.- +.+...+..++.++...|.
T Consensus        75 ~Le------~~ee~l~~~~~~~~e~L~~----i~~-~~~~~~l~~ll~~~~~~~~  118 (194)
T COG1390          75 LLE------AKEEILESVFEAVEEKLRN----IAS-DPEYESLQELLIEALEKLL  118 (194)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHc----CcC-CcchHHHHHHHHHHHHhcC
Confidence            655      3556666655444444433    121 2233335666655554443

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.48  E-value=2.6  Score=31.98  Aligned_cols=35  Identities=31%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA   46 (230)
Q Consensus        12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~   46 (230)
                      .-.+..+.+|+.++.+|...|.++++..+..++.+
T Consensus        54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e   88 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE   88 (132)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777777777777775544444433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=91.37  E-value=4.9  Score=30.25  Aligned_cols=36  Identities=36%  Similarity=0.398  Sum_probs=21.9

Q ss_pred             CChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            1 MNDADVSRQIQ---QMVRFIRQEAEEKANEISVSAEEEF   36 (230)
Q Consensus         1 ~~~~~~~~~i~---~m~~~I~~eA~eka~eI~~~A~ee~   36 (230)
                      |++.++-..|.   .-.+...++|++.++.|+..|++++
T Consensus         3 m~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~ea   41 (108)
T COG2811           3 MDDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEA   41 (108)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455544443   2345566777777777777777776

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=91.30  E-value=5.6  Score=30.75  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           13 MVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEA   46 (230)
Q Consensus        13 m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~   46 (230)
                      -.+..+.+|+.++.+|...|..+++..+..++..
T Consensus        61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~   94 (140)
T PRK07353         61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAE   94 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666777777777777777776555554443

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=91.26  E-value=6.3  Score=31.30  Aligned_cols=11  Identities=9%  Similarity=0.293  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHH
Q 041442          139 RKLVESIVEEA  149 (230)
Q Consensus       139 ~~~v~~~~~~~  149 (230)
                      ..++..++.++
T Consensus       144 ~~li~~~i~~~  154 (159)
T PRK09173        144 SELFKDALAQV  154 (159)
T ss_pred             HHHHHHHHHHH
Confidence            35555555443

>PRK12704 phosphodiesterase; Provisional

Probab=91.18  E-value=15  Score=35.30  Aligned_cols=21  Identities=38%  Similarity=0.303  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 041442           16 FIRQEAEEKANEISVSAEEEF   36 (230)
Q Consensus        16 ~I~~eA~eka~eI~~~A~ee~   36 (230)
                      .+..+|+.+|++|..+|+.++
T Consensus        31 ~~l~~Ae~eAe~I~keA~~eA   51 (520)
T PRK12704         31 AKIKEAEEEAKRILEEAKKEA   51 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555544444

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=89.86  E-value=5.5  Score=28.34  Aligned_cols=44  Identities=23%  Similarity=0.237  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQ   53 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~   53 (230)
                      ...-...|+.+|+.+++.+..++..++..+...++...+..+..
T Consensus        18 A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~   61 (85)
T TIGR02926        18 AEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK   61 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555555555555555555444444433

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=89.59  E-value=11  Score=31.47  Aligned_cols=9  Identities=33%  Similarity=0.656  Sum_probs=4.1

Q ss_pred             HHHHHHHHH
Q 041442          139 RKLVESIVE  147 (230)
Q Consensus       139 ~~~v~~~~~  147 (230)
                      ..++.+++.
T Consensus       190 ~~lI~~~i~  198 (205)
T PRK06231        190 DKLVDEFIR  198 (205)
T ss_pred             HHHHHHHHH
Confidence            344555443

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=89.18  E-value=10  Score=30.47  Aligned_cols=11  Identities=18%  Similarity=0.144  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHH
Q 041442          110 YRTVLKGLIVQ  120 (230)
Q Consensus       110 Y~~~L~~Li~e  120 (230)
                      ...++...|.+
T Consensus       151 ~~~lid~~i~~  161 (167)
T PRK14475        151 SDPLVDAAIGQ  161 (167)
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.44  E-value=24  Score=33.79  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            8 RQIQQMVRFIRQEAEEKANEISVSAEEEFNI   38 (230)
Q Consensus         8 ~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~   38 (230)
                      ++.+++......+|++...+...+|++++..
T Consensus        32 ~eAe~i~keA~~eAke~~ke~~~EaeeE~~~   62 (514)
T TIGR03319        32 ELAKRIIEEAKKEAETLKKEALLEAKEEVHK   62 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444455555444433

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=88.38  E-value=15  Score=31.43  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            6 VSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYER   57 (230)
Q Consensus         6 ~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k   57 (230)
                      ..++...|++.-..+|+...++|..+|+++++    ++.+.....|..+..+
T Consensus        69 a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~----~~~~~a~~~ie~E~~~  116 (246)
T TIGR03321        69 LDQQREVLLTKAKEEAQAERQRLLDEAREEAD----EIREKWQEALRREQAA  116 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            34455555555555666666666666666664    4444444445444433

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=87.83  E-value=15  Score=30.59  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 041442           17 IRQEAEEKANEISVSAEEEFNI   38 (230)
Q Consensus        17 I~~eA~eka~eI~~~A~ee~~~   38 (230)
                      -+..|+.+|..|...|+.+++.
T Consensus        28 ~~~~A~~~A~~i~~~A~~eAe~   49 (201)
T PF12072_consen   28 KLEQAEKEAEQILEEAEREAEA   49 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555543

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=87.78  E-value=7.9  Score=31.03  Aligned_cols=24  Identities=8%  Similarity=0.050  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           74 LNAARIKFLQAQDDAVNAMKEAAS   97 (230)
Q Consensus        74 ~~~~R~~~L~ar~~~i~~v~~~a~   97 (230)
                      ...++..+-..++..+.++-.++-
T Consensus       102 ~~~A~~~Ie~Ek~~Al~elr~eva  125 (154)
T PRK06568        102 KSDAIQLIQNQKSTASKELQDEFC  125 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666666655555553

>PRK12704 phosphodiesterase; Provisional

Probab=87.73  E-value=27  Score=33.52  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            9 QIQQMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus         9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      +.+++......+|++...++..+|++++.
T Consensus        39 eAe~I~keA~~eAke~~ke~~leaeeE~~   67 (520)
T PRK12704         39 EAKRILEEAKKEAEAIKKEALLEAKEEIH   67 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444443

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=86.74  E-value=20  Score=30.96  Aligned_cols=8  Identities=25%  Similarity=0.439  Sum_probs=3.2

Q ss_pred             HHHHHHHh
Q 041442          117 LIVQSMLR  124 (230)
Q Consensus       117 Li~ea~~~  124 (230)
                      .|..++..
T Consensus       193 ~~~~~l~~  200 (250)
T PRK14474        193 QILESLHQ  200 (250)
T ss_pred             HHHHHHHH
Confidence            33344443

>PRK00106 hypothetical protein; Provisional

Probab=86.71  E-value=31  Score=33.23  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=11.7

Q ss_pred             CCcEEEeccHHHHHHHHHhhcHHHHH
Q 041442          196 DGKIVLENTLDARLNVAFRQNLPEIR  221 (230)
Q Consensus       196 dg~i~vdnTle~rl~~~~~~~~p~I~  221 (230)
                      ||+|. -+.++.-++.++.++...|.
T Consensus       291 dgrIh-p~rIEe~v~k~~~e~~~~i~  315 (535)
T PRK00106        291 DGRIH-PARIEELVEKNRLEMDNRIR  315 (535)
T ss_pred             cCCcC-HHHHHHHHHHHHHHHHHHHH
Confidence            45543 44444444444444444443

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=84.57  E-value=14  Score=27.39  Aligned_cols=35  Identities=29%  Similarity=0.277  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           20 EAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERK   58 (230)
Q Consensus        20 eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~   58 (230)
                      +|+.+++++...|+.++    ..++...+......|...
T Consensus        10 ~aE~~~e~~L~~A~~Ea----~~Ii~~Ak~~A~k~~~ei   44 (103)
T PRK08404         10 KAEKEAEERIEKAKEEA----KKIIRKAKEEAKKIEEEI   44 (103)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            56666666666666665    344444444444444433

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=84.25  E-value=14  Score=27.15  Aligned_cols=28  Identities=21%  Similarity=0.192  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           10 IQQMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        10 i~~m~~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      .++-...|..+|+.....+..+|..+++
T Consensus        12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~   39 (105)
T PF03179_consen   12 AEKEAQEIVEEARKEREQRLKQAKEEAE   39 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666666664

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=84.22  E-value=21  Score=29.08  Aligned_cols=10  Identities=0%  Similarity=0.142  Sum_probs=4.8

Q ss_pred             cHHHHHHHHH
Q 041442          138 DRKLVESIVE  147 (230)
Q Consensus       138 D~~~v~~~~~  147 (230)
                      +..++..++.
T Consensus       165 ~~~lid~~i~  174 (184)
T CHL00019        165 HLRTINANIG  174 (184)
T ss_pred             HHHHHHHHHH
Confidence            3445555554

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=83.94  E-value=27  Score=30.06  Aligned_cols=44  Identities=20%  Similarity=0.290  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 041442            5 DVSRQIQQMVRFIRQEAEEKANEISVSAE---EEFNIEKMQLFEAEK   48 (230)
Q Consensus         5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~---ee~~~ek~~~~~~~~   48 (230)
                      .+-.+...-.+.|+.+|+..|++|..+++   .++..++.+++++.+
T Consensus        44 ~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~   90 (255)
T TIGR03825        44 QILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAK   90 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666778888888888888877764   333344444444433

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=83.37  E-value=16  Score=26.93  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           18 RQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAAS   97 (230)
Q Consensus        18 ~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~i~~v~~~a~   97 (230)
                      +-+|+..|.+|..+|+.+..    .++...+.....++..-..+.+        ..........+.........+...+.
T Consensus         9 Ll~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e--------~~~~~~~~~~~~~~~~~~~~l~~et~   76 (105)
T PF03179_consen    9 LLEAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE--------EEFKEKEAEAEGEAEQEAEELEKETE   76 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHH-S------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccchhHHHHHHHHHH
Confidence            34789999999999988863    4443333333322221100000        00111122334445566677777777


Q ss_pred             HHHhhhccC
Q 041442           98 KELLNVSND  106 (230)
Q Consensus        98 ekL~~l~~~  106 (230)
                      .++..+...
T Consensus        77 ~~i~~i~~~   85 (105)
T PF03179_consen   77 EKIEEIKKS   85 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777654

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=82.98  E-value=22  Score=28.32  Aligned_cols=10  Identities=10%  Similarity=0.235  Sum_probs=5.0

Q ss_pred             cHHHHHHHHH
Q 041442          138 DRKLVESIVE  147 (230)
Q Consensus       138 D~~~v~~~~~  147 (230)
                      +..++.+++.
T Consensus       149 ~~~li~~~i~  158 (164)
T PRK14473        149 HDALIAESLA  158 (164)
T ss_pred             HHHHHHHHHH
Confidence            4445555554

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=82.35  E-value=3.3  Score=34.51  Aligned_cols=29  Identities=28%  Similarity=0.510  Sum_probs=25.4

Q ss_pred             CCCccceEEEecCCcEEEeccHHHHHHHHHh
Q 041442          184 PSCSGGVVVASQDGKIVLENTLDARLNVAFR  214 (230)
Q Consensus       184 ~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~  214 (230)
                      +++.||++|+.  |.-.||-|+.+|++.+-.
T Consensus       176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~  204 (210)
T KOG1662|consen  176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK  204 (210)
T ss_pred             hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence            48999999987  888899999999977654

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=82.20  E-value=23  Score=28.03  Aligned_cols=6  Identities=17%  Similarity=0.717  Sum_probs=2.4

Q ss_pred             HHHHHH
Q 041442          141 LVESIV  146 (230)
Q Consensus       141 ~v~~~~  146 (230)
                      ++..++
T Consensus       149 li~~~i  154 (159)
T PRK13461        149 LIKDFI  154 (159)
T ss_pred             HHHHHH
Confidence            444433

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=81.14  E-value=27  Score=28.13  Aligned_cols=7  Identities=14%  Similarity=0.425  Sum_probs=2.8

Q ss_pred             HHHHHHH
Q 041442          140 KLVESIV  146 (230)
Q Consensus       140 ~~v~~~~  146 (230)
                      .+++.++
T Consensus       159 ~lid~~i  165 (173)
T PRK13460        159 AFIETEL  165 (173)
T ss_pred             HHHHHHH
Confidence            3344433

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=80.92  E-value=37  Score=29.56  Aligned_cols=37  Identities=19%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             ccceEEEec----CCcEEEec---cHHHHHHHHHhhcHHHHHHH
Q 041442          187 SGGVVVASQ----DGKIVLEN---TLDARLNVAFRQNLPEIRKR  223 (230)
Q Consensus       187 ~GGvvl~~~----dg~i~vdn---Tle~rl~~~~~~~~p~I~~~  223 (230)
                      .+|+-|...    .|+.+|..   .+|++++.-++.+...+...
T Consensus       234 ~~~i~I~~D~~l~~GgcvIet~~G~IDasi~tqLe~l~~~L~e~  277 (281)
T PRK06669        234 EEHLKIYEDDAISKGGCVIETDFGNIDARIDTQLKQLKEKLLEN  277 (281)
T ss_pred             CCCeEEEECCCCCCCCeEEEcCCCeeeccHHHHHHHHHHHHHhh
Confidence            456666553    47877754   56777777776666555443

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=80.18  E-value=28  Score=27.69  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHH
Q 041442           84 AQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        84 ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~e  120 (230)
                      .+.++.+-++..|..-|..-..+++....++...|.+
T Consensus       124 l~~~i~~la~~~a~kil~~~l~~~~~~~~lid~~i~~  160 (164)
T PRK14471        124 IKNQVANLSVEIAEKVLRKELSNKEKQHKLVEKMLGD  160 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHh
Confidence            4445555555555555544222212345555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		1e-21
2kz9_A	69	Structure Of E1-69 Of Yeast V-Atpase Length = 69		3e-04

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 122/223 (54%), Gaps = 13/223 (5%)
Query: 6   VSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEAR 65
           V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +   E   I   ++ K K+A   
Sbjct: 13  VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 66  RKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRL 125
           ++I  S   N  R+K L A++ +++ + E   ++L  ++N++++Y+ +L+ LIV+++L+L
Sbjct: 73  QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKL 132
Query: 126 NEKAVLLRCREMDRKLVESIVXXXXXXXXXXXXRQAP--KITMDDKVFLPPPPKSADSHE 183
            E   +++  E D  L+ES+             R AP  +I + +             ++
Sbjct: 133 LEPKAIVKALERDVDLIESMKDDIMREYGEKAQR-APLEEIVISNDYL----------NK 181
Query: 184 PSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
              SGGVVV++   KI + NTL+ RL +   + LP IR  L G
Sbjct: 182 DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYG 224

>pdb|2KZ9|A Chain A, Structure Of E1-69 Of Yeast V-Atpase Length = 69

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 6  VSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQA 62
          V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +   E   I   ++ K K+A
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	8e-38
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	3e-30
2kz9_A	69	V-type proton ATPase subunit E; V-ATPase, proton t	2e-20
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	9e-14
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198

 Score =  129 bits (326), Expect = 8e-38
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 22/218 (10%)

Query: 9   QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKI 68
             + +++ I +EAE K   I   A ++    K +     + K +    R   QAE  ++ 
Sbjct: 3   GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQR 62

Query: 69  EYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEK 128
             +      R K L  Q++ ++++ E   + L  +S D  +Y   +K L+ +++  LNEK
Sbjct: 63  IIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEK 120

Query: 129 AVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSG 188
            V +   E    L+ S +EE K E  + +                              G
Sbjct: 121 KVRVMSNEKTLGLIASRIEEIKSELGDVSIE--------------------LGETVDTMG 160

Query: 189 GVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
           GV+V ++DG+I ++NT +AR+     +    I K L G
Sbjct: 161 GVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187

 Score =  109 bits (274), Expect = 3e-30
 Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 40/224 (17%)

Query: 3   DADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQA 62
           +A +S++++  ++ + QEAE KA  +   AEE+         +A ++ ++ +Y    ++A
Sbjct: 4   EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALL----QARERALEAQYRAALRRA 59

Query: 63  EARRKIEYSMQLNAARIKFLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSM 122
           E+  ++              QA+ + +  ++    + L  +     ++  V++ L ++++
Sbjct: 60  ESAGELL-------VATARTQARGEVLEEVRRRVREALEALPQKP-EWPEVVRKLALEAL 111

Query: 123 LRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSH 182
             L     L+     D   +E++  E   E                              
Sbjct: 112 EALPGAKALV-ANPEDLPHLEALARERGVELQA--------------------------- 143

Query: 183 EPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG 226
           EP+   GV     +GK  +EN+L ARL+ A+     ++ + L G
Sbjct: 144 EPALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187

>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR {Saccharomyces cerevisiae} Length = 69

 Score = 80.6 bits (199), Expect = 2e-20
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 1  MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSK 60
          +    V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +   E   I   ++ K K
Sbjct: 8  LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLK 67

Query: 61 QA 62
          +A
Sbjct: 68 KA 69

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106

 Score = 64.3 bits (156), Expect = 9e-14
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 16/121 (13%)

Query: 106 DKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVE-SIVEEAKKEFAEKTKRQAPKI 164
           ++ +Y+  L  LI    + L    +++R  + D +L++ S +   +KE    TK+     
Sbjct: 1   EQPEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK----- 55

Query: 165 TMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRL 224
                V     P          +GG ++ + DG   L+N+L+A  N         I ++L
Sbjct: 56  ---VTVLKKGEPVD-------IAGGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKL 105

Query: 225 L 225
            
Sbjct: 106 F 106

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 17  IRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNA 76
           IR+  EE+   +         + + +  E  KK +++  +R+S+Q E  +    + ++  
Sbjct: 87  IRKWREEQRKRLQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKI---NNRIAD 142

Query: 77  ARIKFLQAQDDAV 89
               F Q  D  +
Sbjct: 143 K--AFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	100.0
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.97
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.91
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	96.98
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	96.78
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	94.19
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	93.5
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	92.67
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	91.84
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	83.37
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	80.8

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=1.1e-52  Score=357.25  Aligned_cols=221  Identities=32%  Similarity=0.535  Sum_probs=206.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            1 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIK   80 (230)
Q Consensus         1 ~~~~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~   80 (230)
                      |||+||+++|++|++||++||++||++|..+|++||+++|.+++++++.++...|+++.++++..+++.+|++.+++|++
T Consensus         8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~   87 (233)
T 4efa_E            8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK   87 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCC
Q 041442           81 FLQAQDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQ  160 (230)
Q Consensus        81 ~L~ar~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~  160 (230)
                      +|.+|+++|+++|+.|+++|.+++.++..|..+|.+||.+|+..++++.++|+|+|.|.++++.+++++..+|+..+|..
T Consensus        88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~  167 (233)
T 4efa_E           88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA  167 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999998878999999999999999999999999999999999999999999999888875


Q ss_pred             CCeeeecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcCCCCC
Q 041442          161 APKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLGKVGV  230 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~~~~~  230 (230)
                      +....++...+|++         .+|+|||+|++.||+|+|||||++||+.++++++|+|++.|||+|++
T Consensus       168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~  228 (233)
T 4efa_E          168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT  228 (233)
T ss_dssp             CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred             CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence            43333444456664         47999999999999999999999999999999999999999999974

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=100.00  E-value=1.1e-33  Score=232.68  Aligned_cols=182  Identities=20%  Similarity=0.250  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQE---YERK-SKQAEARRKIEYSMQLNAARIKFLQAQDD   87 (230)
Q Consensus        12 ~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e---~~k~-~~~~e~~~~i~~S~~~~~~R~~~L~ar~~   87 (230)
                      ++...|.++|+++|++|..+|+++++    .|+.+.+.+....   +.++ ..+.+..+++.+|++.+++|+++|.+|++
T Consensus         2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e   77 (187)
T 3v6i_A            2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE   77 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666653    3333333332222   2222 34455556678899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeec
Q 041442           88 AVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMD  167 (230)
Q Consensus        88 ~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd  167 (230)
                      +++++|+.|+++|.+++.++ .|..+|.+||.+|+..+++++++| |+|.|.++++.++++    +    |     +++.
T Consensus        78 li~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~-----~~~~  142 (187)
T 3v6i_A           78 VLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G-----VELQ  142 (187)
T ss_dssp             HHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T-----CEEE
T ss_pred             HHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C-----eeeC
Confidence            99999999999999999885 799999999999999999988866 999999999988763    2    2     2332


Q ss_pred             CccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcC
Q 041442          168 DKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG  226 (230)
Q Consensus       168 ~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~  226 (230)
                      .    |          .+|.|||+|+++||+|.|||||++||+.++++++|+|++.|||
T Consensus       143 ~----~----------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg  187 (187)
T 3v6i_A          143 A----E----------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG  187 (187)
T ss_dssp             E----C----------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             C----C----------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence            1    1          3799999999999999999999999999999999999999998

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.97  E-value=2.4e-31  Score=218.75  Aligned_cols=189  Identities=25%  Similarity=0.384  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQA   84 (230)
Q Consensus         5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~a   84 (230)
                      ++-++...+.++|+++|+++|++|..+|+++++.++..++++..           ++++..+++.+|.+.++.|+.++.+
T Consensus        10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~   78 (198)
T 2dm9_A           10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI   78 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777777777777777666666554443           3344455677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCee
Q 041442           85 QDDAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKI  164 (230)
Q Consensus        85 r~~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v  164 (230)
                      |+++++.+|..|...|.+++  +..|+.+|.+||.+++..++++.++|+|+|.|.++++.+++.+...|+   +   +++
T Consensus        79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~---~---~~l  150 (198)
T 2dm9_A           79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG---D---VSI  150 (198)
T ss_dssp             --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT---T---CEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc---C---ceE
Confidence            99999999999999999976  337999999999999999888899999999999999999988777775   2   467


Q ss_pred             eecCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcC
Q 041442          165 TMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG  226 (230)
Q Consensus       165 ~vd~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~  226 (230)
                      +++.    |          ..+.|||+|.+++|+|.|||||++||+.+++.+.|.|++.|||
T Consensus       151 ~i~~----~----------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~  198 (198)
T 2dm9_A          151 ELGE----T----------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  198 (198)
T ss_dssp             EECC----C----------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             EECC----C----------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence            7753    1          4789999999999999999999999999999999999999997

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=9.6e-27  Score=174.53  Aligned_cols=102  Identities=24%  Similarity=0.412  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHH-HHHHHHHHHHhhCCCCCeeeecCccCCCCCCCCCCCCCCCCc
Q 041442          109 KYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESI-VEEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCS  187 (230)
Q Consensus       109 ~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~-~~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~  187 (230)
                      +|+++|++||.+|+..+++++++|+|+++|.+++++. ++++.++|+..+|.+ ++++++.       |       .+|.
T Consensus         4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~-~~v~~~~-------~-------~~~~   68 (106)
T 3lg8_A            4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV-TVLKKGE-------P-------VDIA   68 (106)
T ss_dssp             STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSC-CCCCCCC-------C-------CSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCe-EEEEeCC-------C-------cccc
Confidence            7999999999999999999999999999999999998 999999999988874 4454432       2       5899


Q ss_pred             cceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhc
Q 041442          188 GGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLL  225 (230)
Q Consensus       188 GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF  225 (230)
                      |||++++.||+|.|||||++||++++++++|+|++.||
T Consensus        69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF  106 (106)
T 3lg8_A           69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF  106 (106)
T ss_dssp             CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred             ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=96.98  E-value=0.032  Score=44.69  Aligned_cols=115  Identities=17%  Similarity=0.108  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 041442            5 DVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIE--------YSMQLNA   76 (230)
Q Consensus         5 ~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~--------~S~~~~~   76 (230)
                      -++.+.+.-.+.|+.+|+++|++|..+|+++++..+.....+...+....+++....+.+..+..        +......
T Consensus         6 ~l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~   85 (187)
T 3v6i_A            6 ILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRR   85 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778889999999999999999999999887777777666666666665544444333222        2223333


Q ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHhh---hccChhhHHHHHHHHHHH
Q 041442           77 ARIKFLQA-----QDDAVNAMKEAASKELLN---VSNDKNKYRTVLKGLIVQ  120 (230)
Q Consensus        77 ~R~~~L~a-----r~~~i~~v~~~a~ekL~~---l~~~~~~Y~~~L~~Li~e  120 (230)
                      ++..+.+.     ...++..++.++...|..   +.-+| .-..++..++..
T Consensus        86 a~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv~~~-~D~~~v~~~~~~  136 (187)
T 3v6i_A           86 VREALEALPQKPEWPEVVRKLALEALEALPGAKALVANP-EDLPHLEALARE  136 (187)
T ss_dssp             HHHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEEECT-TTHHHHHHHHHH
T ss_pred             HHHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEEECH-HHHHHHHHHHHh
Confidence            44333322     346667777776665533   11233 223455555543

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=96.78  E-value=0.0057  Score=39.08  Aligned_cols=29  Identities=28%  Similarity=0.310  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            9 QIQQMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus         9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~   37 (230)
                      -|+++++.|+++|+.+|+.|..+|+.+++
T Consensus         7 gle~i~~kI~~eA~~eA~~Il~eA~~eA~   35 (52)
T 2kk7_A            7 GVDKIKSKILDDAKAEANKIISEAEAEKA   35 (52)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999984

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=94.19  E-value=0.013  Score=46.77  Aligned_cols=180  Identities=14%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYERKSKQAEARRKIEYSMQLNAARIKFLQAQDDA   88 (230)
Q Consensus         9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k~~~~~e~~~~i~~S~~~~~~R~~~L~ar~~~   88 (230)
                      .|++|++.|+++|+++++.|..+|+++++    .++.+...+...+..               ....+++...-..++..
T Consensus         3 ~le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~---------------~~~~~a~~e~~~~~~~~   63 (198)
T 2dm9_A            3 GAELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAE---------------WIIRRAKTQAELEKQRI   63 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999984    333222222111111               11112222333344455


Q ss_pred             HHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeeecC
Q 041442           89 VNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITMDD  168 (230)
Q Consensus        89 i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~vd~  168 (230)
                      +..+..+++..+.....      .++..++..+...+..  +   +.+....++..++.+....+    +...+.|.+.+
T Consensus        64 ~s~~~~~~r~~~l~~~~------ev~~~~~~~a~~~l~~--l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~~  128 (198)
T 2dm9_A           64 IANARLEVRRKRLAIQE------EIISSVLEEVKRRLET--M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSNE  128 (198)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHH--C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECCH
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh--c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEECH
Confidence            55555666555555433      3444444444444421  1   12334566777776554333    22223444432


Q ss_pred             cc--CCCCCCCCCCCCCCCCccceEEE---ecCCcEEEec-----cHHHHHHHHHhhcHHHHHHHh
Q 041442          169 KV--FLPPPPKSADSHEPSCSGGVVVA---SQDGKIVLEN-----TLDARLNVAFRQNLPEIRKRL  224 (230)
Q Consensus       169 ~~--~L~~~~~~~~~~~~~~~GGvvl~---~~dg~i~vdn-----Tle~rl~~~~~~~~p~I~~~L  224 (230)
                      ..  .+.. .........+ .+|+.+.   ...|++++..     .++.-|+..++.+...+...+
T Consensus       129 ~D~~~v~~-~~~~~~~~~~-~~~l~i~~~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i  192 (198)
T 2dm9_A          129 KTLGLIAS-RIEEIKSELG-DVSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTI  192 (198)
T ss_dssp             HHHHHHHH-THHHHHHHCT-TCEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHH
T ss_pred             hHHHHHHH-HHHHHHHHhc-CceEEECCCCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHH
Confidence            10  0000 0000000000 2466663   2358888854     588999999988888877654

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=93.50  E-value=0.22  Score=31.52  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            4 ADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNI   38 (230)
Q Consensus         4 ~~~~~~i~~m~~~I~~eA~eka~eI~~~A~ee~~~   38 (230)
                      +++..+.+.-.+.|+.+|+.+|++|..+|+.+++.
T Consensus        13 ~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~   47 (52)
T 2kk7_A           13 SKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888999999999999999999999853

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=92.67  E-value=1.3  Score=28.50  Aligned_cols=21  Identities=19%  Similarity=0.124  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 041442           17 IRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        17 I~~eA~eka~eI~~~A~ee~~   37 (230)
                      .+.+|+.++.+|+..|..+++
T Consensus         3 ~L~~Ar~ea~~Ii~~A~~~a~   23 (61)
T 1l2p_A            3 QLKKAKAEAQVIIEQANKRRS   23 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666655555553

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=91.84  E-value=1.6  Score=27.94  Aligned_cols=48  Identities=17%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYE   56 (230)
Q Consensus         9 ~i~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~   56 (230)
                      ....-...|+.+|+..+..|...+..++..+..+++......|..+..
T Consensus         6 ~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~   53 (61)
T 1l2p_A            6 KAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERK   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677777777777777777777766667777666666655443

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=83.37  E-value=0.055  Score=43.48  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=15.1

Q ss_pred             CCCCccceEEEecCCcEEEeccHHHHHHHHHhhc
Q 041442          183 EPSCSGGVVVASQDGKIVLENTLDARLNVAFRQN  216 (230)
Q Consensus       183 ~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      +++++|||+|.-  |..++|.|+.++|+.+...+
T Consensus       155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L  186 (190)
T 2wss_S          155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM  186 (190)
T ss_dssp             ----------------CCTTTTTTTTTTTTCTTT
T ss_pred             ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            468999999997  88889999999998776654

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=80.80  E-value=2.8  Score=26.83  Aligned_cols=23  Identities=30%  Similarity=0.237  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041442           14 VRFIRQEAEEKANEISVSAEEEF   36 (230)
Q Consensus        14 ~~~I~~eA~eka~eI~~~A~ee~   36 (230)
                      ...|..+|++++++|+..|.+++
T Consensus        28 A~~iVeeA~~ea~~ii~eAreeA   50 (56)
T 2k6i_A           28 AVKEIEEAKNRAEQIKAEAIEEA   50 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	2e-25

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 94.1 bits (234), Expect = 2e-25
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 22/140 (15%)

Query: 87  DAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIV 146
           + ++++ E   + L  +S D+  Y   +K L+ +++  LNEK V +   E    L+ S +
Sbjct: 1   EIISSVLEEVKRRLETMSEDE--YFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58

Query: 147 EEAKKEFAEKTKRQAPKITMDDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLD 206
           EE K E  +        I + +                   GGV+V ++DG+I ++NT +
Sbjct: 59  EEIKSELGDV------SIELGE--------------TVDTMGGVIVETEDGRIRIDNTFE 98

Query: 207 ARLNVAFRQNLPEIRKRLLG 226
           AR+     +    I K L G
Sbjct: 99  ARMERFEGEIRSTIAKVLFG 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.95
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	95.58
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	94.38

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=2.5e-28  Score=184.75  Aligned_cols=118  Identities=30%  Similarity=0.470  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHhhcCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeeee
Q 041442           87 DAVNAMKEAASKELLNVSNDKNKYRTVLKGLIVQSMLRLNEKAVLLRCREMDRKLVESIVEEAKKEFAEKTKRQAPKITM  166 (230)
Q Consensus        87 ~~i~~v~~~a~ekL~~l~~~~~~Y~~~L~~Li~ea~~~l~~~~~~v~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~~v~v  166 (230)
                      ++|+++|++|.++|.+++++  .|+++|++||.+|+..+++++++|+|+|+|.++++++++++..+|++      ..+++
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~~------~~~~~   72 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELGD------VSIEL   72 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCTT------CEEEE
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcCC------ceeEe
Confidence            47999999999999999763  79999999999999999999999999999999999999877655532      35555


Q ss_pred             cCccCCCCCCCCCCCCCCCCccceEEEecCCcEEEeccHHHHHHHHHhhcHHHHHHHhcC
Q 041442          167 DDKVFLPPPPKSADSHEPSCSGGVVVASQDGKIVLENTLDARLNVAFRQNLPEIRKRLLG  226 (230)
Q Consensus       167 d~~~~L~~~~~~~~~~~~~~~GGvvl~~~dg~i~vdnTle~rl~~~~~~~~p~I~~~LF~  226 (230)
                      +.      +        .+|.|||+|+|.||+|.|||||++||+.+|++++|+|++.|||
T Consensus        73 ~~------~--------~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~~LFG  118 (118)
T d2dm9a1          73 GE------T--------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  118 (118)
T ss_dssp             CC------C--------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CC------C--------CccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHHHccC
Confidence            42      1        5899999999999999999999999999999999999999998

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.086  Score=33.06  Aligned_cols=46  Identities=17%  Similarity=0.281  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYE   56 (230)
Q Consensus        11 ~~m~~~I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~   56 (230)
                      ..-...|+.+|+..+.+|+.+|..++..+..+++......|..+..
T Consensus         8 K~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~   53 (61)
T d1l2pa_           8 KAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERK   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666666666666666666665666665555555544433

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.21  Score=31.20  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041442           17 IRQEAEEKANEISVSAEEEFNIEKMQLFEAEKKKIKQEYER   57 (230)
Q Consensus        17 I~~eA~eka~eI~~~A~ee~~~ek~~~~~~~~~~i~~e~~k   57 (230)
                      -+.+|+.+|.+|+.+|+...    ..|+++.+.+...+.++
T Consensus         3 ~L~eAK~eAa~Ii~qA~~ra----~qIveeak~~A~~Ea~r   39 (61)
T d1l2pa_           3 QLKKAKAEAQVIIEQANKRR----SQILDEAKAEAEQERTK   39 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            36799999999999999887    57777777766666554