Citrus Sinensis ID: 041459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRAKEDH
Secondary Structure (PSIPRED)
cccccEEEEccEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHcccccccEEEEccEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccEEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHccccHHcEEEEcccccccccccccHcccccEcccccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHccccccccEEcccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
esfhpvevtkglwivpewstppdvqatniilnpglafgtgehaTTKLCLLLLQSLIKGGElfldygtgsgiLGIAAIKFGaamsvgvdidpqAIKSAHQNAalnnigpkkmklhlvpdrtfpasmnerVDGIVEDlssheirgisetekYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSemddwtcvsgtkkrakedh
Flexible Loop (DISEMBL)
esfhpvevtkglwivpewstppdVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEmddwtcvsgtkkrakedh
Low Complexity Region (SEG)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKlcllllqslIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRAKEDH
Disordered region (IsUnstruct)
*****VEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG***MKLHLVPD*TF******RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVS**********
Disordered Region (DISOPRED)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCV****K******
Disordered Region (DISEMBL)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCV***********
Disordered Region (DISPRO)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRAKEDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q3IIC0	293	Ribosomal protein L11 met	yes	no	0.853	0.655	0.420	6e-40
Q478R6	296	Ribosomal protein L11 met	yes	no	0.831	0.631	0.407	3e-39
A4SJL7	292	Ribosomal protein L11 met	yes	no	0.853	0.657	0.394	1e-38
B6ENA3	294	Ribosomal protein L11 met	yes	no	0.857	0.656	0.401	2e-38
B0BRD1	293	Ribosomal protein L11 met	yes	no	0.857	0.658	0.397	2e-38
A3N2I5	293	Ribosomal protein L11 met	yes	no	0.857	0.658	0.397	3e-38
Q7VPN5	293	Ribosomal protein L11 met	yes	no	0.857	0.658	0.383	4e-38
B3GYL9	293	Ribosomal protein L11 met	yes	no	0.857	0.658	0.397	4e-38
Q21MK7	292	Ribosomal protein L11 met	yes	no	0.853	0.657	0.395	8e-38
Q6DAJ5	295	Ribosomal protein L11 met	yes	no	0.853	0.650	0.403	8e-38

>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1

 Score =  164 bits (414), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 27/219 (12%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG HATT LCL  L+S    G+
Sbjct: 101 DNFHPIQFGKRLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATTALCLKWLESQDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGILGIAAIK GA   +G+DIDPQA++++  NA  N +   K++++L     
Sbjct: 161 TVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEASLDNANRNGVA-DKLEVYL----- 214

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
            P +  E                       D+V+ANIL  PL +L   I+   KPG  + 
Sbjct: 215 -PENQPEF--------------------SADIVVANILAQPLRELHSVILGLLKPGGKIA 253

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +SGIL+EQ   + + Y+ F+E   ++   DWT VSGTKK
Sbjct: 254 MSGILTEQAQSVADVYAPFIELDDIAIEGDWTRVSGTKK 292

Methylates ribosomal protein L11.
Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q478R6|PRMA_DECAR Ribosomal protein L11 methyltransferase OS=Dechloromonas aromatica (strain RCB) GN=prmA PE=3 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 119/216 (55%), Gaps = 29/216 (13%)

Query: 3   FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
           F P+ V++ LWIVP W   PD  A N+IL+PG+AFGTG H TT+LCL  L+  +      
Sbjct: 109 FDPIRVSERLWIVPSWHETPDPAAVNLILDPGMAFGTGSHPTTRLCLEWLERNVSEACTV 168

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           LDYG GSGIL IAA + GA    GVDIDPQA+++A  NA  N +        L  D   P
Sbjct: 169 LDYGCGSGILAIAAARLGAGHVAGVDIDPQAVEAARANAERNGV------TALFADSATP 222

Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182
            +                        +YDVV+ANIL NPL  LA  I ++ +PG  + +S
Sbjct: 223 VA-----------------------GEYDVVVANILSNPLRVLAPAICAHVRPGGKLALS 259

Query: 183 GILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
           GIL EQ+  II  Y++++   +    +DW C++G K
Sbjct: 260 GILREQIDEIIAIYAQWIPLQVADVREDWVCLAGIK 295

Methylates ribosomal protein L11.

Dechloromonas aromatica (strain RCB) (taxid: 159087)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida (strain A449) GN=prmA PE=3 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 126/218 (57%), Gaps = 26/218 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           + FHP++  + LWI P W   P+  A N++L+PGLAFGTG H TT LCL  L  L   G+
Sbjct: 99  DHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 158

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGILGIAA+K GAA  +G+DIDPQAI+++H NA  N +   +++L+L     
Sbjct: 159 TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVA-GQIELYL----- 212

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
            PA   + V+                    DVV+ANIL  PL +LA  I  + KPG+++ 
Sbjct: 213 -PADQPQDVEA-------------------DVVVANILAGPLRELAPLIAGHGKPGSLMA 252

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
           +SG+L  Q P +   Y ++ +    +  ++W  +SG K
Sbjct: 253 LSGVLESQAPELETIYGQWFDMDPTAVKEEWCRLSGRK 290

Methylates ribosomal protein L11.

Aeromonas salmonicida (strain A449) (taxid: 382245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B6ENA3|PRMA_ALISL Ribosomal protein L11 methyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=prmA PE=3 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 128/219 (58%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  + LWI P W   P+  A N++L+PGLAFGTG HATT LCL  L+S+   G+
Sbjct: 102 DNFHPMKFGERLWICPSWREIPEPDAINVMLDPGLAFGTGTHATTALCLEWLESIDLTGK 161

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGIL IAAIK GAA  VG+DIDPQAI ++  NA  N +  +++ L L  D+ 
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVVGIDIDPQAITASKDNATRNGVA-EQLTLFLPQDQP 220

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
                        E+L +            DVV+ANIL  PL +L+  I ++ KPG  + 
Sbjct: 221 -------------ENLVA------------DVVVANILAAPLRELSSIITAHVKPGGALA 255

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +SG+L  Q  ++ + YS+      ++E  +W  +SG KK
Sbjct: 256 MSGVLDTQANNVASYYSDNFTLDAIAEQQEWCRISGIKK 294

Methylates ribosomal protein L11.

Aliivibrio salmonicida (strain LFI1238) (taxid: 316275)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B0BRD1|PRMA_ACTPJ Ribosomal protein L11 methyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=prmA PE=3 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG H TT LCL  L SL   G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGIL IAA+K GA  ++G+DIDPQAI ++  NA  N +   +++L L  D+ 
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQP 219

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
                        +DL +            DVV+ANIL  PL +LA +I++  KP   +G
Sbjct: 220 -------------QDLQA------------DVVVANILAGPLKELAPNIITLVKPQGDLG 254

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +SGIL+ Q   +   Y+       + E ++W  ++G KK
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDSVVEKEEWCRITGVKK 293

Methylates ribosomal protein L11.

Actinobacillus pleuropneumoniae serotype 3 (strain JL03) (taxid: 434271)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A3N2I5|PRMA_ACTP2 Ribosomal protein L11 methyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=prmA PE=3 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG H TT LCL  L SL   G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGIL IAA+K GA  ++G+DIDPQAI ++  NA  N +   +++L L  D+ 
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQP 219

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
                        +DL +            DVV+ANIL  PL +LA +I++  KP   +G
Sbjct: 220 -------------QDLQA------------DVVVANILAGPLKELAPNIITLVKPQGDLG 254

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +SGIL+ Q   +   Y+       + E ++W  ++G KK
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVKK 293

Methylates ribosomal protein L11.

Actinobacillus pleuropneumoniae serotype 5b (strain L20) (taxid: 416269)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferase OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=prmA PE=3 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  + LWI P W   PD +A NI+L+PGLAFGTG H TT LCL  L  L   G+
Sbjct: 101 DNFHPMQFGQRLWICPSWREVPDEKAVNIMLDPGLAFGTGTHPTTALCLQWLDGLDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGIL I+A+K GA  ++G+DIDPQAI ++  NAA N +   +++L L  D+ 
Sbjct: 161 TVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQNNAAANGVA-DRLQLFLAKDQ- 218

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
            P ++                       + DVV+ANIL  PL +LA +I++  KP   +G
Sbjct: 219 -PQAL-----------------------QADVVVANILAGPLKELAPNIMTLVKPQGYLG 254

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +SGIL+ Q   +   Y+   +   + E ++W  ++G K+
Sbjct: 255 LSGILATQAQSVCQAYAAVFKLDPVVEKEEWCRITGIKQ 293

Methylates ribosomal protein L11.

Haemophilus ducreyi (strain 35000HP / ATCC 700724) (taxid: 233412)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 26/219 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG H TT LCL  L SL   G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGIL IAA+K GA  ++G+DIDPQAI ++  NA  N +   +++L L  D+ 
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQP 219

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
                        +DL +            DVV+ANIL  PL +LA +I++  KP   +G
Sbjct: 220 -------------QDLQA------------DVVVANILAGPLKELAPNIITLVKPQGDLG 254

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +SGIL+ Q   +   Y+       + E ++W  ++G KK
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVKK 293

Methylates ribosomal protein L11.

Actinobacillus pleuropneumoniae serotype 7 (strain AP76) (taxid: 537457)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q21MK7|PRMA_SACD2 Ribosomal protein L11 methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=prmA PE=3 SV=1

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 123/220 (55%), Gaps = 28/220 (12%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCL-LLLQSLIKGG 59
           +++HP++     WI P W +PPD  A N++L+PGLAFGTG H TT +CL  L Q  +K  
Sbjct: 100 KNYHPIQCGPHFWICPSWLSPPDPNAINLLLDPGLAFGTGTHPTTFMCLEWLAQQDVKNL 159

Query: 60  ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 119
           EL +DYG GSGILGIA +  GA  +VGVDIDPQA+ +  +NA  N +             
Sbjct: 160 EL-IDYGCGSGILGIAGLLMGANSAVGVDIDPQALLATQENAVRNGLA----------KE 208

Query: 120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179
            FP  M +R                +  E  D+V+ANIL  PL++LA  +++  K G  +
Sbjct: 209 AFPVFMPQR----------------APKEPVDMVLANILAGPLVELAPALIALVKSGGKI 252

Query: 180 GISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
            +SG+L  Q   II+ Y   +E   + E D+W C++G KK
Sbjct: 253 CLSGVLGTQRTSIISAYEHAIEFTEVREKDEWICLAGIKK 292

Methylates ribosomal protein L11.

Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) (taxid: 203122)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6DAJ5|PRMA_ERWCT Ribosomal protein L11 methyltransferase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=prmA PE=3 SV=1

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 26/218 (11%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ++FHP++  K LWI P W   PD  A N++L+PGLAFGTG H TT LCL  L  L   G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREIPDPSAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLEGK 160

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             +D+G GSGIL IAA+K GAA ++G+DIDPQAI+++  NA  N +  ++++L+L  D+ 
Sbjct: 161 TIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQ- 218

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
            PA           DLS+            DVV+ANIL  PL +LA  I    K G  +G
Sbjct: 219 -PA-----------DLSA------------DVVVANILAGPLRELAPLISDLPKAGGHLG 254

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTK 218
           +SG+LS Q   +   Y++      ++E ++W  ++G +
Sbjct: 255 LSGVLSTQADGVAEAYADKFTLDPVAEREEWCRITGQR 292

Methylates ribosomal protein L11.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
356514667	381	PREDICTED: ribosomal protein L11 methylt	0.906	0.535	0.672	4e-79
224117126	322	predicted protein [Populus trichocarpa]	0.946	0.661	0.742	2e-76
449507116	390	PREDICTED: ribosomal protein L11 methylt	0.924	0.533	0.641	3e-76
449456729	390	PREDICTED: ribosomal protein L11 methylt	0.906	0.523	0.648	4e-76
225461518	367	PREDICTED: ribosomal protein L11 methylt	0.946	0.580	0.677	3e-75
388507954	397	unknown [Lotus japonicus]	0.973	0.551	0.651	3e-74
357516523	215	Ribosomal protein L11 methyltransferase	0.884	0.925	0.658	2e-69
297792815	368	hypothetical protein ARALYDRAFT_495472 [	0.897	0.548	0.663	3e-67
15238878	371	ribosomal protein L11 methyltransferase-	0.893	0.541	0.648	7e-66
218197035	409	hypothetical protein OsI_20472 [Oryza sa	0.973	0.535	0.543	2e-65

>gi|356514667|ref|XP_003526025.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Glycine max]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/220 (67%), Positives = 172/220 (78%), Gaps = 16/220 (7%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ES HPV+VT+GLW+VP+W TPPDVQATNII+NPGLAFGTGEHATTKLCLLLL   IKGGE
Sbjct: 171 ESLHPVQVTEGLWVVPKWCTPPDVQATNIIVNPGLAFGTGEHATTKLCLLLLHGCIKGGE 230

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             LDYGTG+GIL IAA+KFGAA +VGVD+D +AI SA QNA LNNIG  KM+LHLV  +T
Sbjct: 231 HILDYGTGTGILAIAALKFGAAFAVGVDVDSEAIASASQNAYLNNIGQDKMQLHLVASKT 290

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
             +S N+   G                EK+DVV+ANILLNPLL LAD I+S+AKPGAVVG
Sbjct: 291 SSSSKNDLTFG----------------EKFDVVVANILLNPLLDLADQIISHAKPGAVVG 334

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKR 220
           +SGILSEQ+ +II RYS FLE I +S+MDDW CVSG KK+
Sbjct: 335 LSGILSEQVQYIIERYSPFLEGIEVSKMDDWACVSGRKKK 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117126|ref|XP_002317484.1| predicted protein [Populus trichocarpa] gi|222860549|gb|EEE98096.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 179/214 (83%), Gaps = 1/214 (0%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESFHPVEVT+GLWIVPEW +PPDVQATNIILNPGLAFGTGEH TTKLCLLLL+ LIKG E
Sbjct: 63  ESFHPVEVTEGLWIVPEWRSPPDVQATNIILNPGLAFGTGEHPTTKLCLLLLKKLIKGEE 122

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
           LFLDYGTGSG+L IAA+KFGAA+SVG DIDPQAI SA  NA LN+IGP+ M+LHLVP +T
Sbjct: 123 LFLDYGTGSGVLAIAALKFGAALSVGFDIDPQAIMSARHNATLNSIGPETMELHLVPGKT 182

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
             +S++ R D +V++ S      IS TEKYDVVIANILLNPLL LADHIVSYAKP AVVG
Sbjct: 183 C-SSLDGREDEMVKEQSCCGTGVISGTEKYDVVIANILLNPLLDLADHIVSYAKPRAVVG 241

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCV 214
           ISGI+SEQ   I++RYS  LEDI +SEMD W CV
Sbjct: 242 ISGIISEQCSCIVDRYSMLLEDISVSEMDGWACV 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507116|ref|XP_004162937.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 145/226 (64%), Positives = 172/226 (76%), Gaps = 18/226 (7%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESF PV+V +GLWIVPEW+TP DV ATNIIL+PGLAFG GEH TTKLCL LL SL+KGGE
Sbjct: 180 ESFKPVKVMEGLWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLCLQLLHSLVKGGE 239

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
            FLDYGTG+G+L IA++KFGAA SVG+D+DPQAI+S  +NAALNNI P+K++LHLVP   
Sbjct: 240 YFLDYGTGTGVLAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEPEKLQLHLVP--- 296

Query: 121 FPASMNERVDGIVEDLSSHEI--RGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAV 178
                         DL+ ++     IS  E +D+VIANIL NPLL LAD++VSYAKP AV
Sbjct: 297 -------------SDLAEYKNCEAYISGKENFDIVIANILQNPLLDLADYVVSYAKPEAV 343

Query: 179 VGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRAKED 224
           V +SGILSEQ+P II RYS+FLE I +S MDDW CVSG KKR   D
Sbjct: 344 VALSGILSEQVPAIIERYSQFLEGISVSTMDDWACVSGKKKRLLSD 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456729|ref|XP_004146101.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 144/222 (64%), Positives = 171/222 (77%), Gaps = 18/222 (8%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESF PV+V +GLWIVPEW+TP DV ATNIIL+PGLAFG GEH TTKLCL LL SL+KGGE
Sbjct: 180 ESFKPVKVMEGLWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLCLQLLHSLVKGGE 239

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
            FLDYGTG+G+L IA++KFGAA SVG+D+DPQAI+S  +NAALNNI P+K++LHLVP   
Sbjct: 240 YFLDYGTGTGVLAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEPEKLQLHLVP--- 296

Query: 121 FPASMNERVDGIVEDLSSHEI--RGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAV 178
                         DL+ ++     IS  E +D+VIANIL NPLL LAD++VSYAKP AV
Sbjct: 297 -------------SDLAEYKNCEAYISGKENFDIVIANILQNPLLDLADYVVSYAKPEAV 343

Query: 179 VGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKR 220
           V +SGILSEQ+P II RYS+FLE I +S MDDW CVSG KKR
Sbjct: 344 VALSGILSEQVPAIIERYSQFLEGISVSTMDDWACVSGKKKR 385

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461518|ref|XP_002282613.1| PREDICTED: ribosomal protein L11 methyltransferase [Vitis vinifera] gi|302142971|emb|CBI20266.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 173/220 (78%), Gaps = 7/220 (3%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           ESF PVEVT+GLWIVPEW TPPD  ATNIILNPG AFGTGEH TTKLCLLLL  LIKGGE
Sbjct: 150 ESFCPVEVTEGLWIVPEWRTPPDAHATNIILNPGFAFGTGEHPTTKLCLLLLHGLIKGGE 209

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
            FLDYGTGSGIL IAA+KFGAA SVG+D+DPQAI +A QNAALN I P KM+L LVP   
Sbjct: 210 RFLDYGTGSGILAIAALKFGAASSVGIDVDPQAITAATQNAALNKISPNKMQLTLVPP-- 267

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
                + R   +VE  S + +   +E+E +D+VIANILLNPLL LAD IVS+AKPGAVV 
Sbjct: 268 -----DGRTHEVVEGQSPNSMGVTTESESFDIVIANILLNPLLDLADDIVSHAKPGAVVA 322

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKR 220
           +SGI+SEQ+P+I+ RYS  LE I ++E+DDW CV GTK+R
Sbjct: 323 VSGIISEQVPYIMERYSPLLESISVTEIDDWACVCGTKRR 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507954|gb|AFK42043.1| unknown [Lotus japonicus]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/221 (65%), Positives = 170/221 (76%), Gaps = 2/221 (0%)

Query: 1   ESFHPVEVTKGLWIVPEWSTP--PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKG 58
           ESF PVEVTK LW+VP+WS P  PD +ATNIIL+PGLAFGTGEHATTKLCLLLL+  +KG
Sbjct: 177 ESFCPVEVTKDLWVVPKWSAPRPPDDKATNIILDPGLAFGTGEHATTKLCLLLLRGCVKG 236

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118
           GE  LDYGTG+GIL IAA+KFGAA +VGVDID  AI SA +NAALNNI P KM+L L+  
Sbjct: 237 GEYILDYGTGTGILAIAALKFGAAFAVGVDIDSDAIASASENAALNNIEPDKMQLLLIAS 296

Query: 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAV 178
               +   +   G+VE   + EI+ ++   KYD VIAN+LLNPLL LAD IVS AKPGAV
Sbjct: 297 DASSSFKADSKSGVVEGERTCEIQTVTGQYKYDAVIANMLLNPLLDLADQIVSCAKPGAV 356

Query: 179 VGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +G+SGILSEQ+ +II RYS FLE I +S MD+W CVSG KK
Sbjct: 357 IGLSGILSEQVQYIIRRYSPFLEGIEVSHMDEWACVSGKKK 397

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516523|ref|XP_003628550.1| Ribosomal protein L11 methyltransferase [Medicago truncatula] gi|355522572|gb|AET03026.1| Ribosomal protein L11 methyltransferase [Medicago truncatula]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 159/199 (79%)

Query: 23  DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAA 82
           DVQATNI+LNPG AFGTGEHATTKLCLLLL   I GGE  LDYGTGSGIL IAA+KFGAA
Sbjct: 8   DVQATNIMLNPGHAFGTGEHATTKLCLLLLHDCITGGEYILDYGTGSGILAIAALKFGAA 67

Query: 83  MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIR 142
            +VGVD+D QAI SA+QNAALNNIGP +++L L+      +S +++  G VE  ++HEI+
Sbjct: 68  FAVGVDVDAQAIASAYQNAALNNIGPDRIQLQLIAGENSLSSKDDQTSGFVEGENTHEIQ 127

Query: 143 GISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLED 202
            I++ +KYDVVIANILLNPLL  AD I+S AKPGAV+G+SGILSEQ+  IIN+YS FLE 
Sbjct: 128 TITDKDKYDVVIANILLNPLLDNADQIISRAKPGAVIGLSGILSEQVHQIINKYSPFLEG 187

Query: 203 ILLSEMDDWTCVSGTKKRA 221
           I +S++DDW CVSG K  +
Sbjct: 188 IEVSKLDDWACVSGRKTSS 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792815|ref|XP_002864292.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata] gi|297310127|gb|EFH40551.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/220 (66%), Positives = 169/220 (76%), Gaps = 18/220 (8%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           E F PVE+ + LWIVPEW++PP  +A NIILNPG AFGTGEH TTKLCLLLLQSLIKGGE
Sbjct: 160 ELFQPVEIAEMLWIVPEWTSPPVTEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGE 219

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
            FLDYGTGSGIL IAA+KFGAA SVGVDIDP AIKSA  NAALNNI  +K++LHL P   
Sbjct: 220 AFLDYGTGSGILAIAALKFGAASSVGVDIDPLAIKSASHNAALNNIPLEKLELHLAPS-- 277

Query: 121 FPASMNERVDGIVEDLSSHEIRGIS-ETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179
                        ED SS   R I    +++DVVIANILLNP+++LADHI+S+AKPGA +
Sbjct: 278 -------------EDSSSG--REIPLRKQQFDVVIANILLNPVMELADHILSFAKPGATI 322

Query: 180 GISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           GISGILSEQL +II RYS FLEDI ++ + DW C+SGTKK
Sbjct: 323 GISGILSEQLTNIIERYSPFLEDISVATIGDWVCMSGTKK 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238878|ref|NP_200203.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana] gi|10177254|dbj|BAB10722.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana] gi|332009046|gb|AED96429.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana]

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 142/219 (64%), Positives = 167/219 (76%), Gaps = 18/219 (8%)

Query: 3   FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
           F PVE+ + LWIVPEW++PP  +A NIILNPG AFGTGEH TTKLCLLLLQSLIKGGE F
Sbjct: 165 FQPVEIAERLWIVPEWTSPPVAEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGEAF 224

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           LDYGTGSGIL IAA+KFGAA SVGVDIDP AI SA  NAALNNI  +K++LHL P     
Sbjct: 225 LDYGTGSGILAIAALKFGAASSVGVDIDPLAINSAIHNAALNNIPLEKLELHLAP----- 279

Query: 123 ASMNERVDGIVEDLSSHEIRGIS-ETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
                     +E+ SS   R I  + E++DVVIANILLNP++ LADHI+S+ KPGA +GI
Sbjct: 280 ----------IENSSSG--REIPLQKEQFDVVIANILLNPVMNLADHILSFVKPGATIGI 327

Query: 182 SGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKR 220
           SGILSEQLP++  RYS FLEDI ++ + DW C+SGTKK 
Sbjct: 328 SGILSEQLPNVRERYSPFLEDISVATIGDWVCMSGTKKE 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197035|gb|EEC79462.1| hypothetical protein OsI_20472 [Oryza sativa Indica Group]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/219 (54%), Positives = 155/219 (70%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           E++   +V  GLW++P+W TPPD QA NII+NPGLAFGTGEH TTKLCLLLL+  +KGGE
Sbjct: 190 ETYESTKVIDGLWVIPKWRTPPDPQAINIIINPGLAFGTGEHPTTKLCLLLLRETVKGGE 249

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
            FLDYGTG+G+LGIAA+K GAA+S G+DIDPQA+ SA +N  LN I   KM ++LVP   
Sbjct: 250 RFLDYGTGTGVLGIAALKMGAALSTGIDIDPQAVTSACENMMLNGIDSNKMLVYLVPTNA 309

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
             A     +D   E+  +  +   S    YD+V ANILLNPLL+L + IV YAK G +V 
Sbjct: 310 QSACFPSNIDKSEENRPTGNLELKSSKGSYDIVAANILLNPLLELVEDIVGYAKSGGIVA 369

Query: 181 ISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           +SGILSEQ+P +   YS +LE+I +SE+D W C+ G ++
Sbjct: 370 VSGILSEQVPKVEEAYSRYLENISVSEIDGWACLRGNRR 408

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2154739	371	AT5G53920 [Arabidopsis thalian	0.893	0.541	0.608	1.8e-62
UNIPROTKB|P0A8T1	293	prmA "methyltransferase for 50	0.622	0.477	0.4	2.9e-25
TIGR_CMR|VC_0293	295	VC_0293 "ribosomal protein L11	0.622	0.474	0.406	9.7e-25
TIGR_CMR|SO_0395	293	SO_0395 "ribosomal protein L11	0.622	0.477	0.386	4.8e-23
TIGR_CMR|CPS_0540	293	CPS_0540 "ribosomal protein L1	0.524	0.402	0.411	1e-22
TIGR_CMR|BA_4537	312	BA_4537 "ribosomal protein L11	0.453	0.326	0.423	4.6e-18
TIGR_CMR|GSU_0447	299	GSU_0447 "ribosomal protein L1	0.524	0.394	0.393	7.7e-16
TIGR_CMR|CHY_0417	305	CHY_0417 "ribosomal protein L1	0.613	0.452	0.344	8.3e-16
TIGR_CMR|CJE_1260	281	CJE_1260 "ribosomal protein L1	0.346	0.277	0.430	1.4e-12
TIGR_CMR|GSU_3320	198	GSU_3320 "ribosomal protein L1	0.466	0.530	0.412	8.2e-12

TAIR|locus:2154739 AT5G53920 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 132/217 (60%), Positives = 155/217 (71%)

Query:     3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELF 62
             F PVE+ + LWIVPEW++PP  +A NIILNPG AFGTGEH TTK         IKGGE F
Sbjct:   165 FQPVEIAERLWIVPEWTSPPVAEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGEAF 224

Query:    63 LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
             LDYGTGSGIL IAA+KFGAA SVGVDIDP AI SA  NAALNNI  +K++LHL P     
Sbjct:   225 LDYGTGSGILAIAALKFGAASSVGVDIDPLAINSAIHNAALNNIPLEKLELHLAP----- 279

Query:   123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182
                      I    S  EI    + E++DVVIANILLNP++ LADHI+S+ KPGA +GIS
Sbjct:   280 ---------IENSSSGREIP--LQKEQFDVVIANILLNPVMNLADHILSFVKPGATIGIS 328

Query:   183 GILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
             GILSEQLP++  RYS FLEDI ++ + DW C+SGTKK
Sbjct:   329 GILSEQLPNVRERYSPFLEDISVATIGDWVCMSGTKK 365

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

UNIPROTKB|P0A8T1 prmA "methyltransferase for 50S ribosomal subunit protein L11" [Escherichia coli K-12 (taxid:83333)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 58/145 (40%), Positives = 89/145 (61%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             ++FHP+   + LWI P W   PD  A N++L+PGLAFGTG H TT             G+
Sbjct:   101 DNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK 160

Query:    61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
               +D+G GSGIL IAA+K GAA ++G+DIDPQAI+++  NA  N +  + ++L+L  D+ 
Sbjct:   161 TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDR-LELYLPKDQ- 218

Query:   121 FPASMNERVDGIVEDLSSHEIRGIS 145
              P  M  + D +V ++ +  +R ++
Sbjct:   219 -PEEM--KADVVVANILAGPLRELA 240

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA;IMP

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|VC_0293 VC_0293 "ribosomal protein L11 methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 59/145 (40%), Positives = 89/145 (61%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             ++FHP++  + LWI P W   PD QA N++L+PGLAFGTG H TT             G+
Sbjct:   102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSGK 161

Query:    61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
               +D+G GSGIL IAAIK GAA  +G+DIDPQA+ ++  NAA N +   +++++L  D+ 
Sbjct:   162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQ- 219

Query:   121 FPASMNERVDGIVEDLSSHEIRGIS 145
              P  +    D +V ++ +  +R +S
Sbjct:   220 -PEGLV--ADVVVANILAGPLRELS 241

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SO_0395 SO_0395 "ribosomal protein L11 methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 56/145 (38%), Positives = 86/145 (59%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             +++HP++  K LWI P W   PD  A N+IL+PGLAFGTG H TT              E
Sbjct:   101 DNYHPIQFGKRLWICPSWREVPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160

Query:    61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
               +D+G GSGIL +AA+K GA    G+DID QAI ++  NA  N++  + ++L+L  D+ 
Sbjct:   161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASKANAERNDVADQ-LELYLPEDQ- 218

Query:   121 FPASMNERVDGIVEDLSSHEIRGIS 145
              PA +  + D +V ++ +  +R ++
Sbjct:   219 -PADL--KADVLVANILAGPLRELA 240

GO:0006412 "translation" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|CPS_0540 CPS_0540 "ribosomal protein L11 methyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 49/119 (41%), Positives = 76/119 (63%)

Query:     1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             ++FHP++  + LW+ P W   PD +A N++L+PGLAFGTG H TT              +
Sbjct:   102 DNFHPMKFGERLWVCPSWRDVPDPEAVNVMLDPGLAFGTGTHPTTALCLTWLDGLDLQDK 161

Query:    61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 119
               +D+G GSGIL +AA+K GA   +G+DIDPQA++++  NA  NN+  + ++L+L  D+
Sbjct:   162 TVVDFGCGSGILSLAALKLGAKKVIGIDIDPQALQASLANAERNNVSDR-LELYLPKDQ 219

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|BA_4537 BA_4537 "ribosomal protein L11 methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 44/104 (42%), Positives = 60/104 (57%)

Query:     3 FHPVEVTKGLWIVPEWS--TPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             +HPV+++    IVP W   TP   +   I L+PG+AFGTG H TT          ++ G+
Sbjct:   118 YHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTTMCIRALEKTVQPGD 177

Query:    61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104
               +D GTGSG+L IAA K GA+     D+DP A++SA  N  LN
Sbjct:   178 TIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLN 221

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_0447 GSU_0447 "ribosomal protein L11 methyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 48/122 (39%), Positives = 66/122 (54%)

Query:     1 ESFHPVEVTKGLWIVPEWST-PPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGG 59
             + F P  + + L I P W    P+     I L+PG+AFGTG H TT+          +  
Sbjct:   107 QHFVPTRIGRHLVIKPTWEPFAPEPGDQVIELDPGMAFGTGTHPTTRLCLEALETLGRPD 166

Query:    60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK--LHLVP 117
              + LD GTGSGIL IAA++ GA   +G DIDP A+  A +N ALN +  + +   L L+P
Sbjct:   167 RV-LDVGTGSGILAIAAVRLGARQVIGTDIDPDAVIVAGENCALNGVEVELVTTPLALIP 225

Query:   118 DR 119
              R
Sbjct:   226 GR 227

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CHY_0417 CHY_0417 "ribosomal protein L11 methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 198 (74.8 bits), Expect = 8.3e-16, P = 8.3e-16
 Identities = 50/145 (34%), Positives = 79/145 (54%)

Query:     3 FHPVEVTKGLWIVPEWST-PPDVQATNII-LNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
             F PVEV + L I P W   P   +   II ++PG+AFGTG H TT          +  G+
Sbjct:   112 FKPVEVGEFL-IKPTWEKLPSGKEDKKIIEIDPGMAFGTGTHVTTALVLEALPKYVSPGK 170

Query:    61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             + +D GTGSGIL IA+   GA     +DIDP A+K A +N ++N +   + K+ ++ +  
Sbjct:   171 VVVDVGTGSGILAIASALLGAEKIYALDIDPVAVKVARENISINRL---EDKITVI-END 226

Query:   121 FPASMNERVDGIVEDLSSHEIRGIS 145
                  N+ VD I+ ++ +  I+ ++
Sbjct:   227 LLHGFNQTVDVIIANIIAAVIKELA 251

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|CJE_1260 CJE_1260 "ribosomal protein L11 methyltransferase, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 140 (54.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 34/79 (43%), Positives = 42/79 (53%)

Query:    28 NIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGV 87
             NI +NP LAFG+G H +T           K     LD G GSGILGI   KFG  + +  
Sbjct:   116 NIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGILGIIMAKFGCNVEI-C 174

Query:    88 DIDPQAIKSAHQNAALNNI 106
             D D  AI S+ +NA LN +
Sbjct:   175 DTDELAIDSSLENARLNGV 193

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_3320 GSU_3320 "ribosomal protein L11 methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 45/109 (41%), Positives = 57/109 (52%)

Query:     3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKG--GE 60
             F P  V  G  IVPE +  P  +   +I+    AFG+GEH TT          I G  G 
Sbjct:     6 FTPFTVG-GFIIVPEDAPLPLGEHIPLIMGKKGAFGSGEHETT-ASCLEELERIPGLTGM 63

Query:    61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
               LD G+G+GIL IAA++ GAA  V VDIDP+A  S   N  LN +  +
Sbjct:    64 RGLDLGSGTGILAIAAVRLGAASVVAVDIDPKAAASCAANVRLNGVADR 112

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	4e-73
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	3e-71
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	2e-57
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	8e-50
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	7e-10
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	4e-08
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	5e-08
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	1e-06
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	1e-06
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	1e-06
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	2e-06
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	2e-06
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	3e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	4e-05
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	1e-04
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	1e-04
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	2e-04
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	3e-04
COG1041	347	COG1041, COG1041, Predicted DNA modification methy	0.001
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	0.001
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	0.001
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	0.002
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	0.003
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	0.003

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score =  221 bits (567), Expect = 4e-73
 Identities = 87/220 (39%), Positives = 118/220 (53%), Gaps = 32/220 (14%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           + FHP+ +   LWIVP W  PPD    NI L+PG+AFGTG H TT+LCL  L+ L+  G+
Sbjct: 62  KYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGK 121

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             LD G GSGIL IAA K GA   + VDIDPQA+++A +NA LN +   ++ ++L     
Sbjct: 122 TVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV---ELNVYLPQG-- 176

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
                                       K DV++ANIL NPLL+LA  +    KPG  + 
Sbjct: 177 --------------------------DLKADVIVANILANPLLELAPDLARLLKPGGRLI 210

Query: 181 ISGILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTKK 219
           +SGIL EQ   ++  Y E    +  + E  +W  + G KK
Sbjct: 211 LSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK 250

Length = 250

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score =  218 bits (558), Expect = 3e-71
 Identities = 95/217 (43%), Positives = 127/217 (58%), Gaps = 27/217 (12%)

Query: 3   FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
           FHPV + + L IVP W   P+  A NI L+PG+AFGTG H TT LCL  L+SL+K GE  
Sbjct: 105 FHPVRIGERLTIVPSWEDYPEPDAVNIELDPGMAFGTGTHPTTALCLEALESLVKPGETV 164

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           LD G GSGIL IAA+K GA   VGVDIDP A+++A +NA LN +   +++++L      P
Sbjct: 165 LDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEA-QLEVYL------P 217

Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 182
             + E                     K DVV+ANIL +PL++LA  I +  KPG  + +S
Sbjct: 218 GDLPE--------------------GKADVVVANILADPLIELAPDIYALVKPGGYLILS 257

Query: 183 GILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK 219
           GIL EQ   +   YS+  E I + E ++W C+ G KK
Sbjct: 258 GILEEQADDVAEAYSQGFELITVEEREEWVCIVGKKK 294

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score =  183 bits (467), Expect = 2e-57
 Identities = 85/221 (38%), Positives = 116/221 (52%), Gaps = 30/221 (13%)

Query: 3   FHPVEVTKGLWIVPEWST-PPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
           FHPV + +   IVP W   P      NI L+PGLAFGTG H TT LCL  L+ L+K G+ 
Sbjct: 106 FHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKT 165

Query: 62  FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
            LD G GSGIL IAA K GA   VGVDIDPQA+++A +NA LN                 
Sbjct: 166 VLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG---------------- 209

Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 181
                  V+ +V+      +    E   +DV++ANIL   L++LA  I    KPG  + +
Sbjct: 210 -------VELLVQAKGFLLLEVP-ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLIL 261

Query: 182 SGILSEQLPHIINRYSE---FLEDILLSEMDDWTCVSGTKK 219
           SGIL +Q   +   Y +    + ++L  E ++W  + G +K
Sbjct: 262 SGILEDQAESVAEAYEQAGFEVVEVL--EREEWVAIVGKRK 300

Length = 300

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score =  163 bits (415), Expect = 8e-50
 Identities = 76/212 (35%), Positives = 108/212 (50%), Gaps = 26/212 (12%)

Query: 1   ESFHPVEVTKGLWIVPEW-STPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGG 59
           ++FHPV+  K  WI P W   P D  A  I+L+PGLAFGTG H TT LCL  L+ L    
Sbjct: 101 DNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKD 160

Query: 60  ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 119
           +  +D G GSGIL IAA+K GAA  VG+DIDP A++SA +NA LN +             
Sbjct: 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD----------- 209

Query: 120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 179
                        ++    +  + I    K DV++ANIL   + +L        KPG  +
Sbjct: 210 ------------RLQVKLIYLEQPIE--GKADVIVANILAEVIKELYPQFSRLVKPGGWL 255

Query: 180 GISGILSEQLPHIINRYSEFLEDILLSEMDDW 211
            +SGIL  Q   + + Y +    + + + ++W
Sbjct: 256 ILSGILETQAQSVCDAYEQGFTVVEIRQREEW 287

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 27/108 (25%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGP 108
             L  L++  +  LD GTGSG + IA  K G    V  VDI P A+  A +NA  N +  
Sbjct: 102 AALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-- 159

Query: 109 KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
                              RV  +  DL    +RG     K+D++++N
Sbjct: 160 ------------------VRVLVVQSDLFE-PLRG-----KFDLIVSN 183

Length = 280

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 50  LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
           LL ++   K G+  L+ GTGSGI+ I A K      VGVDI+P A++ A  NA LNNI
Sbjct: 14  LLAENAVDKKGDRVLEVGTGSGIVAIVAAK-NGKKVVGVDINPYAVECAKCNAKLNNI 70

Length = 188

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 27/122 (22%)

Query: 62  FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
            LD G G+G L +A      A   GVDI P A++ A + AA                   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL---------------- 45

Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA----KPGA 177
                + V+ +  D            E +DV+I++  L+ L++     +  A    KPG 
Sbjct: 46  ----ADNVEVLKGDAEELPPEAD---ESFDVIISDPPLHHLVEDLARFLEEARRLLKPGG 98

Query: 178 VV 179
           V+
Sbjct: 99  VL 100

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101
            L+  ++G  + LD G G+GIL I A   GA+  + VDIDP+A++ A  NA
Sbjct: 39  YLRGDLEGKTV-LDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANA 88

Length = 198

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 52  LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGPKK 110
           L+ L KG    LD GTGSG + +A  K      V  VDI P+A+  A +NAA   +    
Sbjct: 81  LERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--- 137

Query: 111 MKLHLVPDRTFPASMNERVDGIV 133
             +  +    F      + D IV
Sbjct: 138 -NVEFLQSDWFEPLPGGKFDLIV 159

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 25/108 (23%)

Query: 50  LLLQSLIKGGELFLD---YGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
             L  L  G    L+   Y TG     + A   GA+    VD+  +A++ A +NA LN +
Sbjct: 210 RALGELAAGKR-VLNLFSY-TGGF--SVHAALGGASEVTSVDLSKRALEWARENAELNGL 265

Query: 107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVI 154
              + +                   IV D+     +     EK+D++I
Sbjct: 266 DGDRHRF------------------IVGDVFKWLRKAERRGEKFDLII 295

Length = 393

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
           L   L+K     LD GTGSG + +A A +   A    VDI P+A+  A +NA        
Sbjct: 101 LEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGA-- 158

Query: 110 KMKLHLVPDRTFPASMNERVDGIV 133
             ++  +    F      R D IV
Sbjct: 159 --RVEFLQGDWFEPLPGGRFDLIV 180

Length = 275

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 30/111 (27%)

Query: 50  LLLQSLIKGGEL----FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN 105
           LL  +L   G       LD  TGSG L +AA   GA     VDI  +A++SA  NA L  
Sbjct: 24  LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG 83

Query: 106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
           +                      VD    D +        E   +DVV++N
Sbjct: 84  V---------------------DVDVRRGDWARA-----VEFRPFDVVVSN 108

Length = 223

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
           LD G GSG++ IAA + GAA  V  DIDP   ++   NAA N +   
Sbjct: 84  LDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSIL 130

Length = 218

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 50  LLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNI 106
           LLL  L    GG+  LD G G G+LG A  K    + V  VDI+ +A++SA  N A N +
Sbjct: 22  LLLSHLPKPLGGK-VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL 80

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 25/125 (20%)

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP 117
           G   LD G G+G L I   +      V GVD+ P+ ++ A +NA L              
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLAL------------ 49

Query: 118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGA 177
                     R+  +  D            E +D V        LL+L D + S  KPG 
Sbjct: 50  --------GPRITFVQGDAPDAL----DLLEGFDAVFIGGGGGDLLELLDALASLLKPGG 97

Query: 178 VVGIS 182
            + ++
Sbjct: 98  RLVLN 102

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 23/107 (21%)

Query: 56  IKGGELFLDYGTGSGILG--IAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL 113
           +K G   LD G G+G L   +A      A  VG+DI  +AI+ A +NA    +G + ++ 
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAK--KLGYENVEF 58

Query: 114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN 160
                            G +E+L   ++    E   +DVVI+N +LN
Sbjct: 59  IQ---------------GDIEELPQLQL----EDNSFDVVISNEVLN 86

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 27/121 (22%)

Query: 63  LDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
           LD G G+G L  A ++        GVDI P A+++A +  A   +               
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLD------------- 47

Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAV 178
                 RV   V D    +         +DVV+A+ +L        +  ++    KPG V
Sbjct: 48  ----AVRVRLDVLDAIDLDP------GSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97

Query: 179 V 179
           +
Sbjct: 98  L 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 49  LLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG 107
           LLL  +L     +  L+ G G+G++ I     G  + +  DI+P A+K   +NA LNN+G
Sbjct: 9   LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCI-LTTDINPFAVKELRENAKLNNVG 67

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 50  LLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMSVG-VDIDPQAIKSAHQNAALNNI 106
           LLL++L    G   LD G G G+LG+   K      +  VD++ +A++SA +N A N +
Sbjct: 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207

Length = 300

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 24/110 (21%)

Query: 50  LLLQSLIK--GGELFLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
           +LL +          LD G G+G LG+  A +   A  VGV+I  +A + A +N ALN +
Sbjct: 34  ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL 93

Query: 107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
                               ER+  I  D+   E         +D++I N
Sbjct: 94  -------------------EERIQVIEADI--KEFLKALVFASFDLIICN 122

Length = 248

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 32  NPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP 91
           +P L+    E A        +  L+K GE  LD   G G   I   K G      +DI+P
Sbjct: 172 SPRLS---TERA-------RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP 221

Query: 92  QAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYD 151
            A++   +N  LN +                     RV+ I+ D  + E+    E    D
Sbjct: 222 DAVEYLKENIRLNKV-------------------EGRVEPILGD--AREV--APELGVAD 258

Query: 152 VVIANILLNPLLQLADHIVSYAKPGAVV 179
            +I  +  +   +     +   K G ++
Sbjct: 259 RIIMGLPKSA-HEFLPLALELLKDGGII 285

Length = 341

>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 54  SLIKGGELFLD--YGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM 111
           + +K GEL LD   GTG GIL I A   GA + +G DID + ++ A  N  L   G +  
Sbjct: 193 ARVKRGELVLDPFCGTG-GIL-IEAGLMGARV-IGSDIDERMVRGAKIN--LEYYGIEDY 247

Query: 112 KLHLVPDRTFPASMNERVDGIVED 135
            +  V D T     +  VD I  D
Sbjct: 248 PVLKVLDATNLPLRDNSVDAIATD 271

Length = 347

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 62  FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103
            LD   GSG LG+ A+  GAA  V V+ D +A+K   +N   
Sbjct: 47  VLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88

Length = 187

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 31/121 (25%)

Query: 62  FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
            LD G G+G +  A  + G +   GVDI  +A++ A +                   R  
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP----------KVRFV 50

Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL----LNP--LLQLADHIVSYAKP 175
            A           DL   E         +D+VI   L    L+P  L  L        +P
Sbjct: 51  VAD--------ARDLPFEE-------GSFDLVICAGLSLDYLSPKQLRALLREAARLLRP 95

Query: 176 G 176
           G
Sbjct: 96  G 96

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 27  TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSV 85
           + +  +P L    GE          +  L+K GE+ +D   G G   I   K   A    
Sbjct: 79  SKVYFSPRLI---GERER-------IAKLVKEGEVVVDMFAGIGPFSIPIAKHSKAKRVY 128

Query: 86  GVDIDPQAIKSAHQNAALN 104
            V+++P+A+K   +N  LN
Sbjct: 129 AVELNPEAVKYLKENIKLN 147

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 23/99 (23%)

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP 117
           G+  LD G GSG   +AA + G    V GV++DP+A   A +  AL  + P         
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAP--------- 51

Query: 118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
                     RV  +V D              +D+V+ N
Sbjct: 52  ----------RVRVVVGDARELLEL---PDGSFDLVLGN 77

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 31/130 (23%)

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118
           G   LD G G GIL     + GA++  G+D   + I+ A  +A  + +           +
Sbjct: 60  GLRVLDVGCGGGILSEPLARLGASV-TGIDASEKPIEVAKLHALESGV-----------N 107

Query: 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL----NPLLQLADHIVSYAK 174
             +  +        VEDL        S   ++DVV    +L    +P            K
Sbjct: 108 IDYRQAT-------VEDL-------ASAGGQFDVVTCMEVLEHVPDP-ESFLRACAKLVK 152

Query: 175 PGAVVGISGI 184
           PG ++ +S I
Sbjct: 153 PGGILFLSTI 162

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	100.0
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	100.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.97
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.97
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.74
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.7
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.69
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.67
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.66
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.66
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.65
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.64
COG4123	248	Predicted O-methyltransferase [General function pr	99.63
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.62
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.61
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.61
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.61
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.61
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.61
PRK14967	223	putative methyltransferase; Provisional	99.59
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.59
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.59
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.58
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.57
COG2890	280	HemK Methylase of polypeptide chain release factor	99.57
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.57
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.57
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.57
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.56
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.56
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.56
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.56
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.56
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.56
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.56
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.55
PRK11207	197	tellurite resistance protein TehB; Provisional	99.55
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.55
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.55
PLN02244	340	tocopherol O-methyltransferase	99.54
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.54
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.54
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.53
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.53
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.52
PRK12335	287	tellurite resistance protein TehB; Provisional	99.52
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.51
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.51
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.5
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.5
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.5
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.49
PRK14968	188	putative methyltransferase; Provisional	99.49
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.49
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.46
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.46
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.46
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.45
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.44
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.44
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.44
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.44
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.43
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.43
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.42
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.41
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.41
PLN02336	475	phosphoethanolamine N-methyltransferase	99.41
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.41
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.39
PRK07402	196	precorrin-6B methylase; Provisional	99.39
KOG2904	328	consensus Predicted methyltransferase [General fun	99.38
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.38
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.38
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.37
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.37
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.37
PLN02672	1082	methionine S-methyltransferase	99.37
PLN02490	340	MPBQ/MSBQ methyltransferase	99.37
PRK04266	226	fibrillarin; Provisional	99.37
PRK06922	677	hypothetical protein; Provisional	99.36
PRK05785	226	hypothetical protein; Provisional	99.35
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.35
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.34
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.34
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.34
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.33
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.33
PRK08317	241	hypothetical protein; Provisional	99.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.32
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.32
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.32
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.32
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.31
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.31
PRK00811	283	spermidine synthase; Provisional	99.31
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.31
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.29
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.29
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.29
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.29
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.29
PHA03412	241	putative methyltransferase; Provisional	99.29
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.28
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.28
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.27
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.27
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.26
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.26
PLN03075	296	nicotianamine synthase; Provisional	99.26
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.26
COG4122	219	Predicted O-methyltransferase [General function pr	99.25
TIGR00438	188	rrmJ cell division protein FtsJ.	99.24
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.24
KOG4300	252	consensus Predicted methyltransferase [General fun	99.24
PHA03411	279	putative methyltransferase; Provisional	99.23
PLN02476	278	O-methyltransferase	99.23
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.23
PRK04457	262	spermidine synthase; Provisional	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.22
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.22
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.21
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.21
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.2
COG2520	341	Predicted methyltransferase [General function pred	99.2
PLN02366	308	spermidine synthase	99.2
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.2
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.2
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.2
KOG1271	227	consensus Methyltransferases [General function pre	99.19
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.19
PRK06202	232	hypothetical protein; Provisional	99.18
TIGR03438	301	probable methyltransferase. This model represents	99.18
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.18
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.17
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.17
PLN02336	475	phosphoethanolamine N-methyltransferase	99.17
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.17
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.16
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.16
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.16
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.15
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.15
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.14
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.14
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.14
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.14
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.13
PTZ00146	293	fibrillarin; Provisional	99.13
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.12
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.11
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.1
PRK01581	374	speE spermidine synthase; Validated	99.09
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.09
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.07
KOG2899	288	consensus Predicted methyltransferase [General fun	99.06
PRK03612	521	spermidine synthase; Provisional	99.06
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.04
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.03
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.03
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.02
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.01
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.97
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.95
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.95
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.93
KOG2361	264	consensus Predicted methyltransferase [General fun	98.93
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.93
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.93
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.92
PLN02823	336	spermine synthase	98.91
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.9
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.9
COG2521	287	Predicted archaeal methyltransferase [General func	98.9
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.87
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.86
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.86
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.85
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.85
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.84
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.83
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.82
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.77
KOG3010	261	consensus Methyltransferase [General function pred	98.77
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.75
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.68
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.66
PRK00536	262	speE spermidine synthase; Provisional	98.65
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.65
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.65
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.64
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.63
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.61
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.59
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.58
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.58
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.58
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.56
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.55
KOG2940	325	consensus Predicted methyltransferase [General fun	98.52
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.5
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.49
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.49
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.47
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.46
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.46
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.46
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.43
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.43
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.42
COG4076	252	Predicted RNA methylase [General function predicti	98.4
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.38
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.32
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.32
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.31
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.3
COG3897	218	Predicted methyltransferase [General function pred	98.26
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.25
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.24
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.21
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.17
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.12
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.11
PRK04148	134	hypothetical protein; Provisional	98.1
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.1
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.08
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.07
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.07
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.05
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.03
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.01
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.94
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.93
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.93
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.89
COG0286	489	HsdM Type I restriction-modification system methyl	97.76
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.72
KOG2730	263	consensus Methylase [General function prediction o	97.7
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.69
PRK10742	250	putative methyltransferase; Provisional	97.69
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.69
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.68
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.66
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.66
PF13679	141	Methyltransf_32: Methyltransferase domain	97.64
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.64
KOG3115	249	consensus Methyltransferase-like protein [General	97.59
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.58
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.57
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.55
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.45
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.42
PRK11524	284	putative methyltransferase; Provisional	97.34
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.34
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.33
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.31
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.26
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.15
PRK13699	227	putative methylase; Provisional	97.12
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.06
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.03
KOG1227	351	consensus Putative methyltransferase [General func	97.01
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.01
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.99
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.9
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.87
PHA01634	156	hypothetical protein	96.84
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.84
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.78
KOG1331	293	consensus Predicted methyltransferase [General fun	96.7
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.68
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.67
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.64
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.55
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.5
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	96.49
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.48
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.45
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.43
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.36
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.34
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.28
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.93
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.77
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.71
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.39
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.34
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.14
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.14
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.88
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.74
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.65
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.59
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.4
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.15
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.14
PRK11524	284	putative methyltransferase; Provisional	94.13
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.07
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.88
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.72
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	93.71
COG4798	238	Predicted methyltransferase [General function pred	93.7
KOG2912	419	consensus Predicted DNA methylase [Function unknow	93.23
PRK13699	227	putative methylase; Provisional	93.06
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.02
KOG2920	282	consensus Predicted methyltransferase [General fun	93.0
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	92.77
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.62
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.59
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.46
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	92.46
COG1568	354	Predicted methyltransferases [General function pre	92.46
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.45
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	92.45
COG0863	302	DNA modification methylase [DNA replication, recom	92.44
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	92.07
PLN02668	386	indole-3-acetate carboxyl methyltransferase	92.03
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.59
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.54
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.48
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	91.35
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	91.34
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	91.07
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.85
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	90.72
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	90.22
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.22
PLN02740	381	Alcohol dehydrogenase-like	90.18
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.07
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	89.85
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.44
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.31
PRK10458	467	DNA cytosine methylase; Provisional	88.93
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	88.83
PLN02827	378	Alcohol dehydrogenase-like	88.81
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	88.71
COG1565	370	Uncharacterized conserved protein [Function unknow	88.2
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	88.13
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	87.69
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	87.68
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.67
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	87.54
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.48
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	87.2
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	87.09
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	87.01
PF03269	177	DUF268: Caenorhabditis protein of unknown function	86.86
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	86.83
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	86.81
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	86.57
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	85.84
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	85.83
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	85.81
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.75
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	85.74
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	85.48
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	85.38
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	84.92
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	84.51
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	83.84
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	83.47
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.93
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	82.81
PRK07417	279	arogenate dehydrogenase; Reviewed	82.65
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	82.65
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	82.62
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	82.32
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	81.84
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	81.8
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	81.75
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	81.62
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	80.91
KOG3924	419	consensus Putative protein methyltransferase invol	80.85
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	80.8
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	80.63
COG4301	321	Uncharacterized conserved protein [Function unknow	80.6
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	80.54
PRK03659	601	glutathione-regulated potassium-efflux system prot	80.5

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=100.00  E-value=2.7e-35  Score=251.37  Aligned_cols=192  Identities=42%  Similarity=0.688  Sum_probs=162.8

Q ss_pred             CCCCceeecCceEEeeCCCCCCC-CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc
Q 041459            1 ESFHPVEVTKGLWIVPEWSTPPD-VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF   79 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~   79 (225)
                      +||+|+.++.+.+|+|+|+++.. .+...+.++|+|+||||.|+|+++++++|.....++++|||+|||||.+++.+++.
T Consensus       103 ~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl  182 (295)
T PF06325_consen  103 KYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL  182 (295)
T ss_dssp             HH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT
T ss_pred             hcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc
Confidence            37999999999999999999855 67789999999999999999999999999999889999999999999999999999


Q ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459           80 GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL  159 (225)
Q Consensus        80 ~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~  159 (225)
                      |+.+++|+|++|.+++.|+.|+..|++.. ++.+.  .....                        ...+||+|++|...
T Consensus       183 GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~--~~~~~------------------------~~~~~dlvvANI~~  235 (295)
T PF06325_consen  183 GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVS--LSEDL------------------------VEGKFDLVVANILA  235 (295)
T ss_dssp             TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEES--CTSCT------------------------CCS-EEEEEEES-H
T ss_pred             CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEE--Eeccc------------------------ccccCCEEEECCCH
Confidence            99999999999999999999999999884 44332  11111                        34789999999999


Q ss_pred             hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhcccccCCceEEEeeee
Q 041459          160 NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~  219 (225)
                      +.+..++..+.++|+|||++++|++..++...+.+.|++.|..++....++|.++.++||
T Consensus       236 ~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~W~~l~~~Kk  295 (295)
T PF06325_consen  236 DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGEWVALVFKKK  295 (295)
T ss_dssp             HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETTEEEEEEEE-
T ss_pred             HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEeC
Confidence            999999999999999999999999999999999999987788888889999999999996

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6e-35  Score=247.37  Aligned_cols=195  Identities=43%  Similarity=0.688  Sum_probs=172.9

Q ss_pred             CCCCceeecCceEEeeCCCCCCCC-cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc
Q 041459            1 ESFHPVEVTKGLWIVPEWSTPPDV-QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF   79 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~   79 (225)
                      ++|||++++++.+|.|+|.++.+. +...+++|||++||||.||++..++++|....++|++|||+|||||.+++.++++
T Consensus       104 ~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL  183 (300)
T COG2264         104 KYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL  183 (300)
T ss_pred             hcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc
Confidence            489999999999999999998777 7899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459           80 GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL  159 (225)
Q Consensus        80 ~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~  159 (225)
                      |+.+++|+|++|.+++.|+.|+..|++.. ............                       ...++||+|++|..-
T Consensus       184 GA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~-----------------------~~~~~~DvIVANILA  239 (300)
T COG2264         184 GAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEV-----------------------PENGPFDVIVANILA  239 (300)
T ss_pred             CCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhh-----------------------cccCcccEEEehhhH
Confidence            99999999999999999999999999873 111211111111                       134689999999988


Q ss_pred             hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh-hhhhhcccccCCceEEEeeee
Q 041459          160 NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~k~  219 (225)
                      +.+..++..+.+.+||||++++|++..++...+.+.|.. .|+..+....++|.++.++|+
T Consensus       240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~  300 (300)
T COG2264         240 EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKRK  300 (300)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence            889999999999999999999999999999999999954 588888889999999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.97  E-value=4.5e-29  Score=213.86  Aligned_cols=187  Identities=41%  Similarity=0.691  Sum_probs=160.8

Q ss_pred             CCCCceeecCceEEeeCCCCCC-CCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc
Q 041459            1 ESFHPVEVTKGLWIVPEWSTPP-DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF   79 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~   79 (225)
                      ++|||+.++.+.+++|+|+.+. ..+...+.++|++.|+||.|+++..+++++.....++++|||+|||+|.+++.+++.
T Consensus       101 ~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~  180 (288)
T TIGR00406       101 DNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL  180 (288)
T ss_pred             HhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc
Confidence            4899999999999999999875 567788999999999999999999999999887778999999999999999998888


Q ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459           80 GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL  159 (225)
Q Consensus        80 ~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~  159 (225)
                      +..+++|+|+++.+++.|++|+..+++.. .+.....+....                        ..++||+|++|...
T Consensus       181 g~~~V~avDid~~al~~a~~n~~~n~~~~-~~~~~~~~~~~~------------------------~~~~fDlVvan~~~  235 (288)
T TIGR00406       181 GAAKVVGIDIDPLAVESARKNAELNQVSD-RLQVKLIYLEQP------------------------IEGKADVIVANILA  235 (288)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHcCCCc-ceEEEecccccc------------------------cCCCceEEEEecCH
Confidence            88899999999999999999999888652 233332221111                        35689999999988


Q ss_pred             hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhcccccCCce
Q 041459          160 NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWT  212 (225)
Q Consensus       160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  212 (225)
                      +.+..++..+.+.|||||.++++++..++..++.+.+.+.|..+...+.++|.
T Consensus       236 ~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~~~~~W~  288 (288)
T TIGR00406       236 EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIRQREEWC  288 (288)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEeccCCCC
Confidence            88889999999999999999999999888899988888777777888888884

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.97  E-value=9e-29  Score=208.02  Aligned_cols=188  Identities=46%  Similarity=0.775  Sum_probs=164.3

Q ss_pred             CCCCceeecCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC
Q 041459            1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG   80 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~   80 (225)
                      ++|+|+.++.+.++.|+|..+.......+.++|++.|++|.++++..+++.+.....++.+|||+|||+|.+++.+++.+
T Consensus        62 ~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g  141 (250)
T PRK00517         62 KYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG  141 (250)
T ss_pred             HHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC
Confidence            47999999999999999999866777889999999999999999999999998777789999999999999999888888


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh
Q 041459           81 AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN  160 (225)
Q Consensus        81 ~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~  160 (225)
                      ..+++|+|+++.+++.|++|+..+++. ..+.+.  .                            .+.+||+|++|...+
T Consensus       142 ~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~--~----------------------------~~~~fD~Vvani~~~  190 (250)
T PRK00517        142 AKKVLAVDIDPQAVEAARENAELNGVE-LNVYLP--Q----------------------------GDLKADVIVANILAN  190 (250)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEc--c----------------------------CCCCcCEEEEcCcHH
Confidence            778999999999999999999888763 112211  1                            122799999998888


Q ss_pred             HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeeee
Q 041459          161 PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       161 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~  219 (225)
                      .+..++..+.+.|||||.++++++..++...+.+.+.+. |..+...+.++|.++.++|+
T Consensus       191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~~  250 (250)
T PRK00517        191 PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK  250 (250)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEeC
Confidence            888899999999999999999999888888888888876 88888888999999999874

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.74  E-value=1.2e-16  Score=126.95  Aligned_cols=148  Identities=26%  Similarity=0.336  Sum_probs=101.4

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ..+...|++.-..+..+.+..+.+.+...  ++.+|||+|||+|.+++.+++.. ..+++++|+++.+++.+++|+..++
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~   79 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG   79 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence            35566777431122334555666666544  67899999999999999988864 4489999999999999999999999


Q ss_pred             CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--------HHHHHHHHHHHhccCCe
Q 041459          106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------PLLQLADHIVSYAKPGA  177 (225)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------~~~~~l~~~~~~LkpgG  177 (225)
                      +.+  +.+...+.-..                      . +..+||+|++|||++        ....++..+.++|||||
T Consensus        80 ~~~--v~~~~~d~~~~----------------------~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G  134 (170)
T PF05175_consen   80 LEN--VEVVQSDLFEA----------------------L-PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG  134 (170)
T ss_dssp             CTT--EEEEESSTTTT----------------------C-CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred             ccc--ccccccccccc----------------------c-cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence            874  55555443221                      0 457899999999973        35778999999999999


Q ss_pred             EEEEeccCCCcHHHHHHHHHhhhhhhc
Q 041459          178 VVGISGILSEQLPHIINRYSEFLEDIL  204 (225)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~  204 (225)
                      .+++..........+   +++.|...+
T Consensus       135 ~l~lv~~~~~~~~~~---l~~~f~~~~  158 (170)
T PF05175_consen  135 RLFLVINSHLGYERL---LKELFGDVE  158 (170)
T ss_dssp             EEEEEEETTSCHHHH---HHHHHS--E
T ss_pred             EEEEEeecCCChHHH---HHHhcCCEE
Confidence            998753333333333   555555443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.70  E-value=4.9e-16  Score=128.84  Aligned_cols=118  Identities=18%  Similarity=0.302  Sum_probs=101.8

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +|.+|||+|||||.+++.+++ .|..+++|+|+|+.||+.|+++....+..+  +.+...+++.+|+             
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~--i~fv~~dAe~LPf-------------  115 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN--VEFVVGDAENLPF-------------  115 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc--eEEEEechhhCCC-------------
Confidence            689999999999999999887 467889999999999999999998777654  7788888888876             


Q ss_pred             ccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          137 SSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                               ++++||.+.+...+.   ++...+++++|.|||||.+++.++.......+...+..+
T Consensus       116 ---------~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~  172 (238)
T COG2226         116 ---------PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY  172 (238)
T ss_pred             ---------CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence                     799999999988764   467889999999999999999888877776776666655

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.69  E-value=1.9e-15  Score=132.29  Aligned_cols=173  Identities=17%  Similarity=0.198  Sum_probs=121.8

Q ss_pred             CCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHH
Q 041459           18 WSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKS   96 (225)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~   96 (225)
                      |.++. ..+..+...|+..+..+....+..++..+...  ...+|||+|||+|.++..+++. +..+++++|+++.+++.
T Consensus       159 ~~~y~-~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~  235 (342)
T PRK09489        159 WKEYQ-VDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES  235 (342)
T ss_pred             ceeee-cCCEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            54554 34577888888776666667777777766432  2458999999999999998875 55689999999999999


Q ss_pred             HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHH
Q 041459           97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADH  168 (225)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~  168 (225)
                      |++++..+++..   .+...+....                        ..++||+|++|+|++.        ...++..
T Consensus       236 A~~nl~~n~l~~---~~~~~D~~~~------------------------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~  288 (342)
T PRK09489        236 SRATLAANGLEG---EVFASNVFSD------------------------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRG  288 (342)
T ss_pred             HHHHHHHcCCCC---EEEEcccccc------------------------cCCCccEEEECCCccCCccccHHHHHHHHHH
Confidence            999999888652   2332222110                        2467999999999864        3578999


Q ss_pred             HHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhc-ccccCCceEEEeeeecccc
Q 041459          169 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTKKRAKE  223 (225)
Q Consensus       169 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~  223 (225)
                      +.+.|||||.+++.....-..+.   .+.+.|...+ ....+.|+-+..+|-|.++
T Consensus       289 a~~~LkpgG~L~iVan~~l~y~~---~l~~~Fg~~~~la~~~~f~v~~a~~~~~~~  341 (342)
T PRK09489        289 AVRHLNSGGELRIVANAFLPYPD---LLDETFGSHEVLAQTGRFKVYRAIMTRQAK  341 (342)
T ss_pred             HHHhcCcCCEEEEEEeCCCChHH---HHHHHcCCeEEEEeCCCEEEEEEEccCcCC
Confidence            99999999999886554332333   2333343333 3355778888888777654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.67  E-value=8e-16  Score=113.06  Aligned_cols=102  Identities=29%  Similarity=0.398  Sum_probs=81.3

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  135 (225)
                      |+.+|||+|||+|.+++.+++ .+..+++|+|+++.+++.|++++...+.. .++.+...+. ...              
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--------------   65 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAEFDP--------------   65 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCHGGT--------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccccCc--------------
Confidence            578999999999999999988 57788999999999999999999655554 5677776655 111              


Q ss_pred             cccccccCCCCCCceeEEEecc-chh------HHHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~-~~~------~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                               ....+||+|+++. ..+      ....+++.+.+.|+|||++++..
T Consensus        66 ---------~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   66 ---------DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             ---------TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence                     1356799999988 322      24567999999999999999853

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.66  E-value=1.1e-15  Score=127.18  Aligned_cols=121  Identities=18%  Similarity=0.274  Sum_probs=85.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++|.+|||+|||||.++..+++.  +..+++|+|+|+.|++.|+++....+..  ++.+...++..++.          
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~----------  112 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPF----------  112 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S----------
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcC----------
Confidence            447899999999999999998874  3468999999999999999999877754  47788888877654          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFL  200 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  200 (225)
                                  ++++||+|++.+.+..   ....+.+++|.|||||.+++.++......-+...+.-++
T Consensus       113 ------------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~  170 (233)
T PF01209_consen  113 ------------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYF  170 (233)
T ss_dssp             -------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--
T ss_pred             ------------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeee
Confidence                        6789999999887643   577899999999999999998887666666666665443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.66  E-value=6.9e-15  Score=117.53  Aligned_cols=125  Identities=23%  Similarity=0.314  Sum_probs=93.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..++..   +.+...+....                
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~d~~~~----------------   78 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG---LDVVMTDLFKG----------------   78 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc---eEEEEcccccc----------------
Confidence            568899999999999999888765 8999999999999999999876643   33443332211                


Q ss_pred             cccccCCCCCCceeEEEeccchhH------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                              ..++||+|++|+|+.+                        +..++..+.++|||||.+++......+..++.
T Consensus        79 --------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~  150 (179)
T TIGR00537        79 --------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTF  150 (179)
T ss_pred             --------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHH
Confidence                    2458999999988631                        34578899999999999998766666677777


Q ss_pred             HHHHhh-hhhhcccccCC
Q 041459          194 NRYSEF-LEDILLSEMDD  210 (225)
Q Consensus       194 ~~~~~~-~~~~~~~~~~~  210 (225)
                      +.+++. |........+.
T Consensus       151 ~~l~~~gf~~~~~~~~~~  168 (179)
T TIGR00537       151 DKLDERGFRYEIVAERGL  168 (179)
T ss_pred             HHHHhCCCeEEEEEEeec
Confidence            777665 55444444443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.65  E-value=7e-15  Score=131.03  Aligned_cols=159  Identities=15%  Similarity=0.125  Sum_probs=117.7

Q ss_pred             CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+.++.+.+|......||.+..++....++.... ++++|||+|||+|.+++.++..++.+++++|+++.+++.|++|+
T Consensus       185 v~E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~-~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~  263 (396)
T PRK15128        185 IEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV-ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNV  263 (396)
T ss_pred             EEECCEEEEEecccccccCcChhhHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            44677888888888888888888877777776554 58899999999999999877777889999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh------------HHHHHHHHH
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN------------PLLQLADHI  169 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~------------~~~~~l~~~  169 (225)
                      ..|++..+++.+...+...+       +..+.           ...++||+|++|||+.            .+..++..+
T Consensus       264 ~~Ngl~~~~v~~i~~D~~~~-------l~~~~-----------~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a  325 (396)
T PRK15128        264 ELNKLDLSKAEFVRDDVFKL-------LRTYR-----------DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLA  325 (396)
T ss_pred             HHcCCCCCcEEEEEccHHHH-------HHHHH-----------hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHH
Confidence            99998533455555443211       11110           0245799999999961            355667788


Q ss_pred             HHhccCCeEEEE-eccCCCcHHHHHHHHHhh
Q 041459          170 VSYAKPGAVVGI-SGILSEQLPHIINRYSEF  199 (225)
Q Consensus       170 ~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~~  199 (225)
                      .++|+|||.++. +|-..-...++.+...+.
T Consensus       326 ~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a  356 (396)
T PRK15128        326 IQLLNPGGILLTFSCSGLMTSDLFQKIIADA  356 (396)
T ss_pred             HHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence            999999998875 555555556666665543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.64  E-value=1.3e-14  Score=128.20  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=123.2

Q ss_pred             CCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+.+..+.++....-.||.+..++....++....+ |++|||++|-||.++++++..|++++++||.|..++++|++|+.
T Consensus       183 ~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~  261 (393)
T COG1092         183 EENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE  261 (393)
T ss_pred             EeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH
Confidence            35566677788877899999999999999988887 99999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHH
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIV  170 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~  170 (225)
                      .|++..+++.+...|+           +.++....       +...+||+|+++||-            ..+.+++..+.
T Consensus       262 LNg~~~~~~~~i~~Dv-----------f~~l~~~~-------~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~  323 (393)
T COG1092         262 LNGLDGDRHRFIVGDV-----------FKWLRKAE-------RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLAL  323 (393)
T ss_pred             hcCCCccceeeehhhH-----------HHHHHHHH-------hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHH
Confidence            9999866666655432           22221111       145689999999983            34677899999


Q ss_pred             HhccCCeEEEEecc-CCCcHHHHHHHHHh
Q 041459          171 SYAKPGAVVGISGI-LSEQLPHIINRYSE  198 (225)
Q Consensus       171 ~~LkpgG~l~~~~~-~~~~~~~~~~~~~~  198 (225)
                      ++|+|||+++++.. ..-....+.+....
T Consensus       324 ~iL~pgG~l~~~s~~~~~~~~~f~~~i~~  352 (393)
T COG1092         324 RLLAPGGTLVTSSCSRHFSSDLFLEIIAR  352 (393)
T ss_pred             HHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence            99999999988544 33444444444443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.63  E-value=4.2e-15  Score=123.52  Aligned_cols=120  Identities=26%  Similarity=0.359  Sum_probs=98.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ...+|||+|||+|.+++.+++. ...++++||+++++.+.|++|+..+++. +++.+...|...+..             
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~-------------  109 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLK-------------  109 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhh-------------
Confidence            4789999999999999998876 6688999999999999999999999987 678887766544421             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  195 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (225)
                             .....+||+|+||||+..                     +.++++.+.++|||||.+++. ...+...++.+.
T Consensus       110 -------~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-~r~erl~ei~~~  181 (248)
T COG4123         110 -------ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-HRPERLAEIIEL  181 (248)
T ss_pred             -------cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-ecHHHHHHHHHH
Confidence                   013447999999999732                     356788999999999999984 667778888888


Q ss_pred             HHhh
Q 041459          196 YSEF  199 (225)
Q Consensus       196 ~~~~  199 (225)
                      ++.+
T Consensus       182 l~~~  185 (248)
T COG4123         182 LKSY  185 (248)
T ss_pred             HHhc
Confidence            8874

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.62  E-value=1.9e-14  Score=115.80  Aligned_cols=123  Identities=16%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +.++.+|||+|||+|.+++.+++. +..+++++|+++.+++.|++++..+++.  .+.+...+....             
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~~-------------   93 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPIE-------------   93 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchhh-------------
Confidence            346789999999999999988764 5578999999999999999999877764  245544332110             


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  204 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (225)
                                 ...+||+|+++.....+..+++.+.+.|+|||.+++..+...+..++.+.+.+. +..++
T Consensus        94 -----------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287         94 -----------LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             -----------cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence                       235799999987766678889999999999999999766666777777777664 54333

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.61  E-value=2.8e-14  Score=126.69  Aligned_cols=166  Identities=16%  Similarity=0.134  Sum_probs=113.6

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .+..+.++|+..+   +++.+..+.+.+.....++.+|||+|||+|.+++.+++ .+..+++|+|+|+.+++.|++|+..
T Consensus       221 ~G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~  297 (423)
T PRK14966        221 YGRRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD  297 (423)
T ss_pred             cCcEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            3456778888554   56666666665544445667999999999999998775 4677899999999999999999987


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----------------------
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----------------------  160 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----------------------  160 (225)
                      ++.   ++.+...+.....                     .....+||+|++|||+.                       
T Consensus       298 ~g~---rV~fi~gDl~e~~---------------------l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG  353 (423)
T PRK14966        298 LGA---RVEFAHGSWFDTD---------------------MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDF  353 (423)
T ss_pred             cCC---cEEEEEcchhccc---------------------cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCC
Confidence            763   2444443321110                     00234799999999861                       


Q ss_pred             -----HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc--cccCCceEEEeee
Q 041459          161 -----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL--SEMDDWTCVSGTK  218 (225)
Q Consensus       161 -----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~w~~~~~~k  218 (225)
                           .++.++..+.+.|+|||.+++ +++.++...+.+.+.+. +..++.  .-.|.-+.+.+++
T Consensus       354 ~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~  418 (423)
T PRK14966        354 SDGLSCIRTLAQGAPDRLAEGGFLLL-EHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY  418 (423)
T ss_pred             CchHHHHHHHHHHHHHhcCCCcEEEE-EECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence                 134678888899999999877 45667777777777654 433332  2234445555543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.61  E-value=1.3e-14  Score=121.81  Aligned_cols=115  Identities=17%  Similarity=0.227  Sum_probs=87.0

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      ..+..++.....++.+|||+|||+|..+..+++   .+..+++|+|+|+.|++.|++++...+.. ..+.+...+.... 
T Consensus        44 ~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~~-  121 (247)
T PRK15451         44 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRDI-  121 (247)
T ss_pred             HHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCChhhC-
Confidence            333334444456788999999999999988776   35678999999999999999998876654 3455655544333 


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                             +...+|+|+++..+++     ...+++++++.|||||.+++++..
T Consensus       122 -----------------------~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        122 -----------------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             -----------------------CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                                   3345899999877654     356899999999999999998654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.61  E-value=4.3e-14  Score=122.20  Aligned_cols=163  Identities=16%  Similarity=0.178  Sum_probs=108.7

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhcc-CC-CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GG-ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~-~~-~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +..+.++|+.-+ . ..++...+...+....+ .+ .+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+.
T Consensus       101 g~~f~v~~~vli-p-r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~  178 (307)
T PRK11805        101 GLEFYVDERVLV-P-RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE  178 (307)
T ss_pred             CcEEEECCCCcC-C-CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            456777777643 1 22344454444543322 23 68999999999999998864 56789999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh----------------------
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN----------------------  160 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~----------------------  160 (225)
                      .+++. .++.+...+....          +             +..+||+|++|||+.                      
T Consensus       179 ~~~l~-~~i~~~~~D~~~~----------l-------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~g  234 (307)
T PRK11805        179 RHGLE-DRVTLIESDLFAA----------L-------------PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAA  234 (307)
T ss_pred             HhCCC-CcEEEEECchhhh----------C-------------CCCCccEEEECCCCCCccchhhcCHhhccCccceeeC
Confidence            88865 3455555443111          0             345799999998862                      


Q ss_pred             ------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEe
Q 041459          161 ------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSG  216 (225)
Q Consensus       161 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~  216 (225)
                            .+..++..+.++|+|||.+++. +..+ ...+.+.+... +........+.|+.+..
T Consensus       235 g~dGl~~~~~i~~~a~~~L~pgG~l~~E-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (307)
T PRK11805        235 GDDGLDLVRRILAEAPDYLTEDGVLVVE-VGNS-RVHLEEAYPDVPFTWLEFENGGDGVFLLT  295 (307)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCCEEEEE-ECcC-HHHHHHHHhhCCCEEEEecCCCceEEEEE
Confidence                  1356788999999999999984 4433 34455555442 32334445566665554

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.61  E-value=7.6e-14  Score=119.48  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=100.4

Q ss_pred             ceeEEecccceecCCCC-chHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEH-ATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~-~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      +..+.++|+.-+   .+ ++...+...+....  .++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++|+
T Consensus        89 g~~f~v~~~vli---pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~  165 (284)
T TIGR03533        89 GLEFYVDERVLI---PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI  165 (284)
T ss_pred             CcEEEECCCCcc---CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            456777777544   23 34444444454332  34579999999999999998874 5578999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh---------------------
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN---------------------  160 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~---------------------  160 (225)
                      ..+++. +++.+...+....                      + +..+||+|++|||+.                     
T Consensus       166 ~~~~~~-~~i~~~~~D~~~~----------------------~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~  221 (284)
T TIGR03533       166 ERHGLE-DRVTLIQSDLFAA----------------------L-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALA  221 (284)
T ss_pred             HHcCCC-CcEEEEECchhhc----------------------c-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhc
Confidence            988875 3455555443111                      0 345799999998862                     


Q ss_pred             -------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          161 -------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       161 -------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                             .+..++..+.++|+|||.+++. ++. ....+.+.+..
T Consensus       222 gg~dGl~~~~~il~~a~~~L~~gG~l~~e-~g~-~~~~v~~~~~~  264 (284)
T TIGR03533       222 SGEDGLDLVRRILAEAADHLNENGVLVVE-VGN-SMEALEEAYPD  264 (284)
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECc-CHHHHHHHHHh
Confidence                   1356688899999999999884 433 33566665554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=3e-14  Score=120.84  Aligned_cols=172  Identities=22%  Similarity=0.257  Sum_probs=113.6

Q ss_pred             eCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHH
Q 041459           16 PEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAI   94 (225)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l   94 (225)
                      +.|..+..-.+..|.=.|++.=......-++++++.|...  .+.+|+|+|||.|.+++.+++ .+..+++.+|+|..++
T Consensus       118 ~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av  195 (300)
T COG2813         118 PEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV  195 (300)
T ss_pred             hhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH
Confidence            3455543334455666777321122223334444433222  345999999999999999887 5678999999999999


Q ss_pred             HHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHH
Q 041459           95 KSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLA  166 (225)
Q Consensus        95 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l  166 (225)
                      +.|++|+..|++++.  .+...+....                        -.++||+|+||||++.        -.+++
T Consensus       196 ~~ar~Nl~~N~~~~~--~v~~s~~~~~------------------------v~~kfd~IisNPPfh~G~~v~~~~~~~~i  249 (300)
T COG2813         196 ESARKNLAANGVENT--EVWASNLYEP------------------------VEGKFDLIISNPPFHAGKAVVHSLAQEII  249 (300)
T ss_pred             HHHHHhHHHcCCCcc--EEEEeccccc------------------------ccccccEEEeCCCccCCcchhHHHHHHHH
Confidence            999999999998752  2222221111                        2348999999999864        23789


Q ss_pred             HHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhc-ccccCCceEEEeee
Q 041459          167 DHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTK  218 (225)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k  218 (225)
                      ..+.+.|++||.+.+...   ....+...+++.|..++ +.+.+.+.-+..+|
T Consensus       250 ~~A~~~L~~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~~~gf~Vl~a~k  299 (300)
T COG2813         250 AAAARHLKPGGELWIVAN---RHLPYEKKLKELFGNVEVLAKNGGFKVLRAKK  299 (300)
T ss_pred             HHHHHhhccCCEEEEEEc---CCCChHHHHHHhcCCEEEEEeCCCEEEEEEec
Confidence            999999999999998755   34445555666665444 44555666555544

>PRK14967 putative methyltransferase; Provisional

Probab=99.59  E-value=6.3e-14  Score=115.90  Aligned_cols=143  Identities=28%  Similarity=0.329  Sum_probs=97.1

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ..+..+++..-   .......+...+... ..++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++|+..++
T Consensus         7 ~~~~~~~g~~~---p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~   83 (223)
T PRK14967          7 DALLRAPGVYR---PQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG   83 (223)
T ss_pred             ceeecCCCCcC---CCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence            45566666331   122334444555432 45678999999999999999888776689999999999999999988776


Q ss_pred             CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------------------------
Q 041459          106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------------------  161 (225)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------------------  161 (225)
                      +.   +.+...+....                       .+.+.||+|++|+|+..                        
T Consensus        84 ~~---~~~~~~d~~~~-----------------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
T PRK14967         84 VD---VDVRRGDWARA-----------------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV  137 (223)
T ss_pred             Ce---eEEEECchhhh-----------------------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence            53   33443332111                       03568999999987542                        


Q ss_pred             HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          162 LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                      +..+++.+.++||+||.+++......+..+..+.++.
T Consensus       138 ~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~  174 (223)
T PRK14967        138 LDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSE  174 (223)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHH
Confidence            3456788999999999998843333344555555543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.59  E-value=1e-13  Score=122.58  Aligned_cols=151  Identities=15%  Similarity=0.182  Sum_probs=101.7

Q ss_pred             CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CcceEEEecC
Q 041459           41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGP-KKMKLHLVPD  118 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~-~~~~~~~~~~  118 (225)
                      ...-++.+++.+...  .+.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.|++|+..++... ..+.+...+.
T Consensus       213 LD~GtrllL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~  290 (378)
T PRK15001        213 LDIGARFFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA  290 (378)
T ss_pred             cChHHHHHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence            334455555554321  246999999999999999876 467789999999999999999998776431 2344443332


Q ss_pred             CCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccCCeEEEEeccCCCcHH
Q 041459          119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGILSEQLP  190 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  190 (225)
                      ...                      + ...+||+|+||||++.        ...++..+.+.|+|||.+++.....   .
T Consensus       291 l~~----------------------~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~---l  344 (378)
T PRK15001        291 LSG----------------------V-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---L  344 (378)
T ss_pred             ccc----------------------C-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC---c
Confidence            110                      0 3457999999999853        2467889999999999999974332   2


Q ss_pred             HHHHHHHhhhhhhcc-cccCCceEEEeeee
Q 041459          191 HIINRYSEFLEDILL-SEMDDWTCVSGTKK  219 (225)
Q Consensus       191 ~~~~~~~~~~~~~~~-~~~~~w~~~~~~k~  219 (225)
                      .+...+++.|...+. .....++-+..+|.
T Consensus       345 ~y~~~L~~~fg~~~~va~~~kf~vl~a~k~  374 (378)
T PRK15001        345 DYFHKLKKIFGNCTTIATNNKFVVLKAVKL  374 (378)
T ss_pred             CHHHHHHHHcCCceEEccCCCEEEEEEEeC
Confidence            233444445544443 34455666766663

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.59  E-value=7.9e-15  Score=120.35  Aligned_cols=109  Identities=23%  Similarity=0.315  Sum_probs=86.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .|++|||+|||-|.++..+|+.| .+|+|+|.++.+|+.|+..+...++.   +.......+.+.               
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~---i~y~~~~~edl~---------------  119 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN---IDYRQATVEDLA---------------  119 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc---ccchhhhHHHHH---------------
Confidence            78999999999999999999998 66999999999999999998888765   222222221110               


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHI  192 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (225)
                             ...++||+|+|.-+++|   ...++..+.+++||||.+++|++......-+
T Consensus       120 -------~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~  170 (243)
T COG2227         120 -------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYL  170 (243)
T ss_pred             -------hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHH
Confidence                   03479999999888876   5678999999999999999998875444433

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.58  E-value=3.1e-14  Score=114.17  Aligned_cols=114  Identities=17%  Similarity=0.180  Sum_probs=88.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.+++.++.. +..+++|+|+++.+++.+++++..+++.+  +.+...+...+.              
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~--i~~i~~d~~~~~--------------  105 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN--VEIVNGRAEDFQ--------------  105 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC--eEEEecchhhcc--------------
Confidence            4889999999999999987764 45789999999999999999988887642  666665543321              


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                               ..++||+|+++. ++++..+++.+.++|+|||.+++. .......++....+.
T Consensus       106 ---------~~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~  156 (181)
T TIGR00138       106 ---------HEEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK  156 (181)
T ss_pred             ---------ccCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence                     356899999987 666778889999999999999885 455555555555444

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.57  E-value=5.4e-14  Score=109.37  Aligned_cols=106  Identities=28%  Similarity=0.397  Sum_probs=84.5

Q ss_pred             cCCCcEEEEcccccHHHHHHH-h-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAI-K-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~-~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +++.+|||+|||+|.++..++ + .+..+++|+|+++.+++.|++++...++.  ++.+...+...++.           
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~-----------   68 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQ-----------   68 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCG-----------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhcccc-----------
Confidence            367899999999999999988 4 35678999999999999999999888876  36677666544310           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                              .+ + +.||+|+++.++++   ...+++.+.++|+++|.+++....
T Consensus        69 --------~~-~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   69 --------EL-E-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             --------CS-S-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --------cc-C-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence                    00 2 78999999987654   557899999999999999987665

...

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.6e-13  Score=117.16  Aligned_cols=145  Identities=25%  Similarity=0.329  Sum_probs=99.6

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhhccCCC-cEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHH
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE-LFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~-~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+..+.++++...   +++.+..+.+.+........ +|+|+|||||.+++.+++. +..+|+|+|+|+.+++.|++|+.
T Consensus        79 ~gl~~~v~~~vli---Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~  155 (280)
T COG2890          79 GGLRFKVDEGVLI---PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE  155 (280)
T ss_pred             cceeeeeCCCcee---cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence            3455566666433   44555544444322222222 7999999999999998875 55689999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH---------------------
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---------------------  161 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------  161 (225)
                      .+++.  +  +.....+.+..                      -.++||+|++||||-+                     
T Consensus       156 ~~~l~--~--~~~~~~dlf~~----------------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~  209 (280)
T COG2890         156 RNGLV--R--VLVVQSDLFEP----------------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVG  209 (280)
T ss_pred             HcCCc--c--EEEEeeecccc----------------------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHcc
Confidence            99973  2  23322333311                      2348999999999611                     


Q ss_pred             -------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          162 -------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                             +..++..+.++|+|||.+++. ....+...+.+.+...
T Consensus       210 g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g~~q~~~v~~~~~~~  253 (280)
T COG2890         210 GGDGLEVYRRILGEAPDILKPGGVLILE-IGLTQGEAVKALFEDT  253 (280)
T ss_pred             CccHHHHHHHHHHhhHHHcCCCcEEEEE-ECCCcHHHHHHHHHhc
Confidence                   356788999999999998884 5555666666666654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.57  E-value=4.1e-14  Score=100.12  Aligned_cols=92  Identities=26%  Similarity=0.382  Sum_probs=73.3

Q ss_pred             EEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccccc
Q 041459           63 LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIR  142 (225)
Q Consensus        63 lDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (225)
                      ||+|||+|..+..+++.+..+++++|+++.+++.++++....+     +.+...+...++.                   
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~~~l~~-------------------   56 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDAEDLPF-------------------   56 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBTTSSSS-------------------
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC-----chheeehHHhCcc-------------------
Confidence            7999999999999998877889999999999999998875443     3366666665543                   


Q ss_pred             CCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEE
Q 041459          143 GISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       143 ~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~  181 (225)
                         ++++||+|+++..+++   ...+++++.+.|||||++++
T Consensus        57 ---~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   57 ---PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ----TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---ccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence               6789999999877654   57789999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.57  E-value=5.6e-14  Score=133.70  Aligned_cols=141  Identities=17%  Similarity=0.208  Sum_probs=107.1

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +.+..+.++......||.+..++....++.... ++++|||+|||+|.+++.+++.|+.+|+++|+|+.+++.|++|+..
T Consensus       505 e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~  583 (702)
T PRK11783        505 EYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL  583 (702)
T ss_pred             ECCEEEEEEcCCCCcceECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            455666666655557777777777777776655 4889999999999999999998888899999999999999999999


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--------------HHHHHHHHH
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------------PLLQLADHI  169 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------------~~~~~l~~~  169 (225)
                      |++...++.+...+...+           +        ..  ...+||+|++|||+.              .+..++..+
T Consensus       584 ng~~~~~v~~i~~D~~~~-----------l--------~~--~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a  642 (702)
T PRK11783        584 NGLSGRQHRLIQADCLAW-----------L--------KE--AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDA  642 (702)
T ss_pred             hCCCccceEEEEccHHHH-----------H--------HH--cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHH
Confidence            988633455555443211           0        00  145799999999851              245678889


Q ss_pred             HHhccCCeEEEEeccCC
Q 041459          170 VSYAKPGAVVGISGILS  186 (225)
Q Consensus       170 ~~~LkpgG~l~~~~~~~  186 (225)
                      .++|+|||.+++++...
T Consensus       643 ~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        643 KRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             HHHcCCCCEEEEEeCCc
Confidence            99999999998865543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.57  E-value=4.7e-14  Score=120.22  Aligned_cols=157  Identities=17%  Similarity=0.190  Sum_probs=113.3

Q ss_pred             CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+.+..+.++....-.||.+..++....++.... ++++|||++|-||.++++++..|+.+++.||.|..++++|++|+
T Consensus        88 v~E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~  166 (286)
T PF10672_consen   88 VEENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENA  166 (286)
T ss_dssp             EEETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHH
T ss_pred             EEECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence            34667777888877778999999999999987765 48999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch---------hHHHHHHHHHHHh
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL---------NPLLQLADHIVSY  172 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---------~~~~~~l~~~~~~  172 (225)
                      ..|+++.+.+++...+.  +         .++        ..++..++||+||++||-         ..+.+++..+.++
T Consensus       167 ~lNg~~~~~~~~~~~Dv--f---------~~l--------~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l  227 (286)
T PF10672_consen  167 ALNGLDLDRHRFIQGDV--F---------KFL--------KRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKL  227 (286)
T ss_dssp             HHTT-CCTCEEEEES-H--H---------HHH--------HHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT
T ss_pred             HHcCCCccceEEEecCH--H---------HHH--------HHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99998766666655432  1         111        111135689999999983         3467789999999


Q ss_pred             ccCCeEEEEecc-CCCcHHHHHHHHHh
Q 041459          173 AKPGAVVGISGI-LSEQLPHIINRYSE  198 (225)
Q Consensus       173 LkpgG~l~~~~~-~~~~~~~~~~~~~~  198 (225)
                      |+|||.+++++. ..-....+.+.+..
T Consensus       228 l~~gG~l~~~scs~~i~~~~l~~~~~~  254 (286)
T PF10672_consen  228 LKPGGLLLTCSCSHHISPDFLLEAVAE  254 (286)
T ss_dssp             EEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence            999999876433 33334445554443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.56  E-value=2.4e-13  Score=114.49  Aligned_cols=146  Identities=21%  Similarity=0.247  Sum_probs=99.1

Q ss_pred             cceeEEecccceecCCCCchHHHHHH-HHHhhc--cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHH
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLL-LLQSLI--KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~L~~~~--~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      .+..+.++|+..+   +++.+..+.+ .+....  ..+.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.|++|
T Consensus        53 ~g~~~~v~~~vf~---pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N  129 (251)
T TIGR03704        53 CGLRIAVDPGVFV---PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN  129 (251)
T ss_pred             cCeEEEECCCCcC---CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            3466788887543   3333334333 333221  1235899999999999999876 4556899999999999999999


Q ss_pred             HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------
Q 041459          101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------------  161 (225)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------  161 (225)
                      +..++.     .+...+....       ....             ..++||+|++|||+..                   
T Consensus       130 ~~~~~~-----~~~~~D~~~~-------l~~~-------------~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~a  184 (251)
T TIGR03704       130 LADAGG-----TVHEGDLYDA-------LPTA-------------LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVA  184 (251)
T ss_pred             HHHcCC-----EEEEeechhh-------cchh-------------cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHH
Confidence            987652     2333332111       0000             1347999999998631                   


Q ss_pred             ----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          162 ----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       162 ----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                ++.++..+.++|||||.+++. +..++..++...+++.
T Consensus       185 l~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~~l~~~  231 (251)
T TIGR03704       185 LDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVEAFARA  231 (251)
T ss_pred             hcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHHHHHHC
Confidence                      346788888999999999984 5566777787777764

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=1.2e-13  Score=116.72  Aligned_cols=107  Identities=22%  Similarity=0.337  Sum_probs=91.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +++|++|||+|||-|.+++++++....+|+|+++|+++.+.+++.+...++. +++++...+-..+              
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~--------------  134 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-DNVEVRLQDYRDF--------------  134 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-cccEEEecccccc--------------
Confidence            6799999999999999999999875677999999999999999999999987 5677776665544              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                 .++||-|++-.++++     +..+++.+.+.|+|||.+++.++....
T Consensus       135 -----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         135 -----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             -----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence                       345999999888766     678999999999999999998776543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.56  E-value=1.3e-13  Score=116.73  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcC-CCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNN-IGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +.++.+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++..... .....+.+...+...++.         
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~---------  141 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF---------  141 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC---------
Confidence            346889999999999999988764 3 4689999999999999987653211 011245666666655432         


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                   ++++||+|+++..+++   ...++.++.+.|||||.+++.++....
T Consensus       142 -------------~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~  187 (261)
T PLN02233        142 -------------DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST  187 (261)
T ss_pred             -------------CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence                         5678999999877654   567899999999999999998776543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.56  E-value=1.4e-14  Score=107.38  Aligned_cols=103  Identities=30%  Similarity=0.511  Sum_probs=80.3

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      |.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|+.++..+++. +++.+...+....       ....      
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~-------~~~~------   66 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDL-------PEPL------   66 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHH-------HHTC------
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhc-------hhhc------
Confidence            5689999999999999988877788999999999999999999988875 3466666543221       1011      


Q ss_pred             ccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEe
Q 041459          139 HEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                             ...+||+|++|+|+..           +..+++.+.++|||||.+++.
T Consensus        67 -------~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   67 -------PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             -------TTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------cCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                   5688999999999853           357799999999999999874

...

>TIGR00740 methyltransferase, putative

Probab=99.56  E-value=1.3e-13  Score=115.08  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=82.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF---GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ..++.+|||+|||+|.++..+++.   +..+++|+|+++.|++.|++++...+.. .++.+...+....           
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~-----------  118 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHV-----------  118 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhC-----------
Confidence            456789999999999999988763   4678999999999999999988755433 2455655554433           


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                   +...+|+|+++..+++     ...+++++.+.|||||.+++++...
T Consensus       119 -------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       119 -------------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             -------------CCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence                         2345899998877654     3568999999999999999987654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.56  E-value=8.3e-14  Score=114.81  Aligned_cols=126  Identities=13%  Similarity=0.206  Sum_probs=102.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-C------CCeEEEEeCCHHHHHHHHHHHHhcCCCCC-cceEEEecCCCCCcccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-G------AAMSVGVDIDPQAIKSAHQNAALNNIGPK-KMKLHLVPDRTFPASMNER  128 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~------~~~v~~vDi~~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  128 (225)
                      .+++++||++||||-++.-+.+. +      ..+|+.+|++|.||+.++++....++..+ .+.+..++++.+|+     
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF-----  173 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF-----  173 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC-----
Confidence            36789999999999999887653 2      27899999999999999999877776643 36677778887765     


Q ss_pred             ccccccccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459          129 VDGIVEDLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  204 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (225)
                                       ++..||..++.+.+   .++.+.+++++|.|||||++++.++...+.+.+...|..+ +..+.
T Consensus       174 -----------------dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~Vlp  236 (296)
T KOG1540|consen  174 -----------------DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLP  236 (296)
T ss_pred             -----------------CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhc
Confidence                             78899998886654   4678899999999999999999888887878888888887 55433

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.56  E-value=7.1e-14  Score=112.62  Aligned_cols=112  Identities=24%  Similarity=0.250  Sum_probs=86.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.+++.+++ .+..+++++|+++.+++.|++++..+++++  +++...+...+.            
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~--i~~~~~d~~~~~------------  108 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN--VTVVHGRAEEFG------------  108 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC--EEEEeccHhhCC------------
Confidence            44589999999999999998775 566789999999999999999999888753  666655543321            


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN  194 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (225)
                                 ..++||+|+++. ...+..+++.++++|||||.+++.. .......+..
T Consensus       109 -----------~~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~  155 (187)
T PRK00107        109 -----------QEEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK-GRDPEEEIAE  155 (187)
T ss_pred             -----------CCCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHH
Confidence                       345799999976 4556788999999999999999863 3334444433

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.55  E-value=3.1e-13  Score=111.90  Aligned_cols=113  Identities=18%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|+++....++.  ++.+...+....+.          
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~----------  110 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH--NVELVHGNAMELPF----------  110 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEEechhcCCC----------
Confidence            446889999999999999988864  3468999999999999999998766553  35555554433311          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHI  192 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (225)
                                  +.++||+|+++..+++   +..+++++.+.|+|||.+++.+....+...+
T Consensus       111 ------------~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~  160 (231)
T TIGR02752       111 ------------DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGF  160 (231)
T ss_pred             ------------CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHH
Confidence                        4578999999876544   5678999999999999999876654444333

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.55  E-value=1.3e-13  Score=111.94  Aligned_cols=98  Identities=20%  Similarity=0.256  Sum_probs=77.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++....++.+  +.....+...++               
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~--v~~~~~d~~~~~---------------   91 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDN--LHTAVVDLNNLT---------------   91 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCc--ceEEecChhhCC---------------
Confidence            56899999999999999999875 479999999999999999988777643  444444433221               


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEE
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~  181 (225)
                              ..+.||+|+++..+++     ...++..+.++|||||.+++
T Consensus        92 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         92 --------FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             --------cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                    2457999999877643     46789999999999999654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.55  E-value=6e-14  Score=119.36  Aligned_cols=131  Identities=20%  Similarity=0.289  Sum_probs=85.8

Q ss_pred             EecccceecCCCCchH--------HHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459           30 ILNPGLAFGTGEHATT--------KLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        30 ~~~~~~~f~~~~~~~~--------~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      .+++.|.|+.+.++..        ...++.+.+.  +++|++|||+|||.|.+++.+++....+|+|+.+|++..+.|++
T Consensus        24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~  103 (273)
T PF02353_consen   24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARE  103 (273)
T ss_dssp             TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH
T ss_pred             hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHH
Confidence            3567777766555332        2222222222  67899999999999999999988633469999999999999999


Q ss_pred             HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhcc
Q 041459          100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAK  174 (225)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lk  174 (225)
                      .+...++. +.+.+...+-..+                         +.+||.|++-.++++     +..+++.+.++||
T Consensus       104 ~~~~~gl~-~~v~v~~~D~~~~-------------------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk  157 (273)
T PF02353_consen  104 RIREAGLE-DRVEVRLQDYRDL-------------------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK  157 (273)
T ss_dssp             HHHCSTSS-STEEEEES-GGG----------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred             HHHhcCCC-CceEEEEeecccc-------------------------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence            99988887 5667766543322                         348999999777765     5788999999999


Q ss_pred             CCeEEEEeccCC
Q 041459          175 PGAVVGISGILS  186 (225)
Q Consensus       175 pgG~l~~~~~~~  186 (225)
                      |||.+++..+..
T Consensus       158 pgG~~~lq~i~~  169 (273)
T PF02353_consen  158 PGGRLVLQTITH  169 (273)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCcEEEEEeccc
Confidence            999999866543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.55  E-value=4.7e-13  Score=114.59  Aligned_cols=144  Identities=24%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             ceeEEecccceecCCCCchHHHH-HHHHHhhc-cCC-CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEHATTKLC-LLLLQSLI-KGG-ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~-~~~L~~~~-~~~-~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      +..+.++++...   +++.+..+ ...+.... .++ .+|||+|||+|.+++.++.. +..+++|+|+++.+++.|++|+
T Consensus        82 g~~f~v~~~vli---Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~  158 (284)
T TIGR00536        82 GLEFFVNEHVLI---PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA  158 (284)
T ss_pred             CeEEEECCCCcC---CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            456777777433   34433333 33443332 223 68999999999999998874 4578999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh---------------------
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN---------------------  160 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~---------------------  160 (225)
                      ..+++. .++.+...+....          +             ...+||+|++|||+.                     
T Consensus       159 ~~~~~~-~~v~~~~~d~~~~----------~-------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~  214 (284)
T TIGR00536       159 EKNQLE-HRVEFIQSNLFEP----------L-------------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALV  214 (284)
T ss_pred             HHcCCC-CcEEEEECchhcc----------C-------------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhc
Confidence            888764 2355544432110          0             234799999998852                     


Q ss_pred             -------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          161 -------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       161 -------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                             .+..++..+.++|+|||.+++ +++.++...+.+.+.
T Consensus       215 gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~~q~~~~~~~~~  257 (284)
T TIGR00536       215 GGDDGLNILRQIIELAPDYLKPNGFLVC-EIGNWQQKSLKELLR  257 (284)
T ss_pred             CCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHH
Confidence                   245678899999999999987 456666667766665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02244 tocopherol O-methyltransferase

Probab=99.54  E-value=1.5e-13  Score=120.46  Aligned_cols=105  Identities=19%  Similarity=0.202  Sum_probs=84.7

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....++. +++.+...+....+.             
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~-------------  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPF-------------  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCC-------------
Confidence            467899999999999999988754567999999999999999988877764 346666666544422             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +++.||+|++...+++   ...++.++.++|||||.+++.++
T Consensus       183 ---------~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        183 ---------EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ---------CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                     5678999999777655   45789999999999999998654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.54  E-value=3.1e-13  Score=113.42  Aligned_cols=110  Identities=20%  Similarity=0.306  Sum_probs=85.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.|+++...       ..+...+.+.++.              
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-------~~~~~~d~~~~~~--------------   99 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-------DHYLAGDIESLPL--------------   99 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-------CCEEEcCcccCcC--------------
Confidence            46799999999999998887765 5799999999999999876431       1234444433321              


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                              .+++||+|+++.++++   +..++.++.+.|||||.++++.+......++.+.+.
T Consensus       100 --------~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~  154 (251)
T PRK10258        100 --------ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ  154 (251)
T ss_pred             --------CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence                    4568999999988754   567899999999999999999888777777666554

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.54  E-value=1e-13  Score=125.58  Aligned_cols=158  Identities=14%  Similarity=0.052  Sum_probs=111.0

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .+..+.+.|+..|......+..+...++... ..++.+|||+|||+|.+++.+++.. .+++|+|+|+.+++.|++|+..
T Consensus       263 ~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~  341 (443)
T PRK13168        263 FGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARR  341 (443)
T ss_pred             CCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH
Confidence            3566777777666655444444444444333 3467899999999999999988875 6799999999999999999998


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +++.+  +.+...+....       ....           .....+||+|++|||.....+.++.+.+ ++|++++|+||
T Consensus       342 ~~~~~--v~~~~~d~~~~-------l~~~-----------~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        342 NGLDN--VTFYHANLEED-------FTDQ-----------PWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             cCCCc--eEEEEeChHHh-------hhhh-----------hhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence            88753  56665554221       0000           0024579999999998766677766655 69999999999


Q ss_pred             cCCCcHHHHHHHHHhhhhhhc
Q 041459          184 ILSEQLPHIINRYSEFLEDIL  204 (225)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~  204 (225)
                      ....-..++.......|....
T Consensus       401 np~tlaRDl~~L~~~gY~l~~  421 (443)
T PRK13168        401 NPATLARDAGVLVEAGYRLKR  421 (443)
T ss_pred             ChHHhhccHHHHhhCCcEEEE
Confidence            887777777666554443333

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.53  E-value=1.6e-14  Score=119.46  Aligned_cols=101  Identities=21%  Similarity=0.347  Sum_probs=81.0

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc----ceEEEecCCCCCcccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK----MKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      |++|||+|||+|.++..|+++| +.|+|+|.++.+++.|+......+..+..    +++...+.+.              
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--------------  154 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--------------  154 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--------------
Confidence            4789999999999999999998 55999999999999999987666655432    2233333332              


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHH---HHHHHHHHHhccCCeEEEEeccC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                 ..+.||.|+|...++|.   .+++..+.+.|||||.++++++.
T Consensus       155 -----------~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  155 -----------LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             -----------cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence                       24569999999998874   67899999999999999997664

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.53  E-value=1.6e-13  Score=111.31  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=75.6

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++..+++.   +.....+....+               
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~~---------------   90 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP---LRTDAYDINAAA---------------   90 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC---ceeEeccchhcc---------------
Confidence            56799999999999999999876 46999999999999999888766653   334333332221               


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              ..++||+|+++.++++     ...+++.+.++|||||.+++.
T Consensus        91 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        91 --------LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             --------ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                    2357999999877643     457899999999999985553

Part of a tellurite-reducing operon tehA and tehB

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.52  E-value=1.1e-13  Score=112.81  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  133 (225)
                      ..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.  .+.+...+. +.++           
T Consensus        38 ~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~-----------  104 (202)
T PRK00121         38 GNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLL-----------  104 (202)
T ss_pred             CCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC--CEEEEecCHHHHHH-----------
Confidence            336789999999999999988764 5568999999999999999998877764  355555443 2210           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                               ...+.+.||+|+++++..+           ...+++.+.+.|||||.+++++........+.+.+++.
T Consensus       105 ---------~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~  172 (202)
T PRK00121        105 ---------DMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE  172 (202)
T ss_pred             ---------HHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence                     0014567999999765321           35689999999999999999876666666666666654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.52  E-value=2.7e-13  Score=116.22  Aligned_cols=125  Identities=21%  Similarity=0.270  Sum_probs=88.6

Q ss_pred             EEecccceecCCC--CchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           29 IILNPGLAFGTGE--HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        29 ~~~~~~~~f~~~~--~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      +-..|...|....  ..+...+...+.. . ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.+++++..+++
T Consensus        91 fy~~~~~~f~~~~~~~~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l  167 (287)
T PRK12335         91 FYCKPEDYFHKKYNLTATHSEVLEAVQT-V-KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL  167 (287)
T ss_pred             EEEcchhhHhhhhccccccHHHHHHhhc-c-CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3446665554332  2334444444422 2 45699999999999999999876 4799999999999999999887776


Q ss_pred             CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEE
Q 041459          107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~  181 (225)
                      .   +.....+.....                       ..++||+|+++..++     ....++..+.++|+|||++++
T Consensus       168 ~---v~~~~~D~~~~~-----------------------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        168 N---IRTGLYDINSAS-----------------------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             c---eEEEEechhccc-----------------------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            3   444444433221                       256799999987764     356789999999999999665


Q ss_pred             e
Q 041459          182 S  182 (225)
Q Consensus       182 ~  182 (225)
                      .
T Consensus       222 v  222 (287)
T PRK12335        222 V  222 (287)
T ss_pred             E
Confidence            3

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.51  E-value=8.6e-13  Score=98.16  Aligned_cols=104  Identities=17%  Similarity=0.244  Sum_probs=81.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|+|+|||+|.++..+++. +..+++++|+++.+++.+++++..+++.+  +.+...+......            
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~------------   83 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN--IVIVEGDAPEALE------------   83 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc--eEEEeccccccCh------------
Confidence            45789999999999999998874 56789999999999999999988776542  4444433321100            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                               ....+||+|++.........+++.+.+.|||||.++++.
T Consensus        84 ---------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        84 ---------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             ---------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence                     023589999998777777889999999999999999853

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.51  E-value=6.4e-13  Score=122.09  Aligned_cols=116  Identities=22%  Similarity=0.277  Sum_probs=87.2

Q ss_pred             CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.|++|+..+++. +++.+...+....          .     
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~----------~-----  202 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN----------I-----  202 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh----------C-----
Confidence            46899999999999998775 56778999999999999999999888765 2344444332110          0     


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----------------------------HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----------------------------LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                              ..++||+|++|||+-.                             +..++..+.++|+|||.+++ +++.++
T Consensus       203 --------~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~q  273 (506)
T PRK01544        203 --------EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQ  273 (506)
T ss_pred             --------cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCch
Confidence                    3457999999998521                             34567888999999999988 466667


Q ss_pred             HHHHHHHHHhh
Q 041459          189 LPHIINRYSEF  199 (225)
Q Consensus       189 ~~~~~~~~~~~  199 (225)
                      ...+.+.+...
T Consensus       274 ~~~v~~~~~~~  284 (506)
T PRK01544        274 EEAVTQIFLDH  284 (506)
T ss_pred             HHHHHHHHHhc
Confidence            77777766653

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.50  E-value=7.9e-13  Score=110.51  Aligned_cols=121  Identities=26%  Similarity=0.297  Sum_probs=88.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..+.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.  .+.+...+....              
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~--------------  149 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFEP--------------  149 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhcc--------------
Confidence            34569999999999999998874 5668999999999999999999887764  244544443211              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----------------------------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----------------------------LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                               .+.++||+|++|+|+..                             +..++..+.++|+|||.+++. ...
T Consensus       150 ---------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~-~~~  219 (251)
T TIGR03534       150 ---------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE-IGY  219 (251)
T ss_pred             ---------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE-ECc
Confidence                     04568999999998642                             135678899999999999885 334


Q ss_pred             CcHHHHHHHHHhh-hhhh
Q 041459          187 EQLPHIINRYSEF-LEDI  203 (225)
Q Consensus       187 ~~~~~~~~~~~~~-~~~~  203 (225)
                      .+..++.+.+.+. |..+
T Consensus       220 ~~~~~~~~~l~~~gf~~v  237 (251)
T TIGR03534       220 DQGEAVRALFEAAGFADV  237 (251)
T ss_pred             cHHHHHHHHHHhCCCCce
Confidence            4555566666553 4433

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.50  E-value=9.6e-13  Score=104.51  Aligned_cols=119  Identities=15%  Similarity=0.205  Sum_probs=98.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++++++|+|||||.+++.++.. +..+++++|.++++++..++|....++++  +.+..+++...             
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n--~~vv~g~Ap~~-------------   96 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN--LEVVEGDAPEA-------------   96 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc--EEEEeccchHh-------------
Confidence            668999999999999999987753 67889999999999999999999999764  55555544221             


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                               +.+...+|.||+... ..+..+++.+...|||||.+++..+..+......+.+++.
T Consensus        97 ---------L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~  151 (187)
T COG2242          97 ---------LPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL  151 (187)
T ss_pred             ---------hcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence                     002237999999887 7789999999999999999999888888888888887765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.50  E-value=3.3e-13  Score=113.69  Aligned_cols=109  Identities=19%  Similarity=0.269  Sum_probs=82.7

Q ss_pred             HHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      ++.....++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++....++. .++.+...+...+.        
T Consensus        37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~--------  106 (255)
T PRK11036         37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIA--------  106 (255)
T ss_pred             HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHh--------
Confidence            333333457899999999999999998875 56999999999999999998877754 23455444332220        


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ..             ..++||+|+++.++++   ...++..+.++|||||.+++.
T Consensus       107 ~~-------------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        107 QH-------------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hh-------------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            00             3568999999888765   457899999999999999875

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.49  E-value=4.8e-13  Score=113.36  Aligned_cols=105  Identities=16%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|..+..+++....+++|+|+++.+++.|+++...    ...+.+...+....+.            
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~------------  113 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDF------------  113 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCC------------
Confidence            457889999999999999888764445799999999999999987543    1235555554432211            


Q ss_pred             cccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                ++++||+|++...+.     ....+++++.++|||||.++++++..
T Consensus       114 ----------~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        114 ----------PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             ----------CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence                      467899999965432     45678999999999999999987643

>PRK14968 putative methyltransferase; Provisional

Probab=99.49  E-value=1.7e-12  Score=103.77  Aligned_cols=119  Identities=30%  Similarity=0.407  Sum_probs=86.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..++..+..+.+...+....               
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------------   85 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------------   85 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------------
Confidence            46789999999999999998877 46799999999999999999987776532234433322110               


Q ss_pred             ccccccCCCCCCceeEEEeccchhH------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHI  192 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (225)
                             + ....||+|++|+|+.+                        +..+++++.++|||||.+++..........+
T Consensus        86 -------~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l  157 (188)
T PRK14968         86 -------F-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEV  157 (188)
T ss_pred             -------c-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHH
Confidence                   0 2347999999987632                        3457899999999999988754444445666


Q ss_pred             HHHHHhh
Q 041459          193 INRYSEF  199 (225)
Q Consensus       193 ~~~~~~~  199 (225)
                      .+.+.+.
T Consensus       158 ~~~~~~~  164 (188)
T PRK14968        158 LEYLEKL  164 (188)
T ss_pred             HHHHHHC
Confidence            6666654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.49  E-value=2.1e-13  Score=118.42  Aligned_cols=104  Identities=21%  Similarity=0.364  Sum_probs=81.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+++|+|.++.+++.|+.+....+.. ..+.+...+.+.++.              
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~--------------  194 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLAD--------------  194 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhh--------------
Confidence            46799999999999999888765 46999999999999999876554432 245565555433311              


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                              ..++||+|++..++++   ...++..+.++|||||.++++.+.
T Consensus       195 --------~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        195 --------EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             --------ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence                    4568999999887765   467899999999999999997653

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=6.9e-12  Score=106.41  Aligned_cols=144  Identities=22%  Similarity=0.294  Sum_probs=95.4

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      ..+.++++...   .++.+..+.+.+...  ..++.+|||+|||+|.+++.++.. +..+++++|+++.+++.|++++. 
T Consensus        78 ~~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-  153 (275)
T PRK09328         78 LDFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-  153 (275)
T ss_pred             cEEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-
Confidence            34555555322   334444444443322  335789999999999999998874 56789999999999999999987 


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----------------------
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----------------------  161 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------------------  161 (225)
                      +... ..+.+...+....                      . ..++||+|++|+|+..                      
T Consensus       154 ~~~~-~~i~~~~~d~~~~----------------------~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~  209 (275)
T PRK09328        154 HGLG-ARVEFLQGDWFEP----------------------L-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFG  209 (275)
T ss_pred             hCCC-CcEEEEEccccCc----------------------C-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcC
Confidence            2222 2344544433111                      0 2468999999988631                      


Q ss_pred             -------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          162 -------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                             +..++..+.++|+|||.+++. +.......+.+.+...
T Consensus       210 g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~g~~~~~~~~~~l~~~  253 (275)
T PRK09328        210 GEDGLDFYRRIIEQAPRYLKPGGWLLLE-IGYDQGEAVRALLAAA  253 (275)
T ss_pred             CCCHHHHHHHHHHHHHHhcccCCEEEEE-ECchHHHHHHHHHHhC
Confidence                   245678888999999999984 4444555666666543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.46  E-value=1.8e-12  Score=105.22  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=90.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.++.+|||+|||+|.+++.+++.  +..+++++|+++.+++.|++++..+++. +.+.+...+.....       .   
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l-------~---  106 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEIL-------F---  106 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhH-------h---
Confidence            557899999999999999988763  3468999999999999999999887753 33555444332110       0   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                               .  ....||.|+++.....+..+++.+.+.|||||.+++.....+...+....+++
T Consensus       107 ---------~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  160 (198)
T PRK00377        107 ---------T--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN  160 (198)
T ss_pred             ---------h--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence                     0  23579999997766667888999999999999998855545555666666654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.46  E-value=9.7e-13  Score=105.94  Aligned_cols=100  Identities=21%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.++||+|||.|..++++++.|.. |+++|+|+.+++.+++.+...+++   ++....+.+...               
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~---i~~~~~Dl~~~~---------------   90 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLD---IRTRVADLNDFD---------------   90 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-T---EEEEE-BGCCBS---------------
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCce---eEEEEecchhcc---------------
Confidence            4679999999999999999999876 999999999999998888777765   566666654442               


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ..+.||+|++...+.+     ...+++.+...++|||++++.++
T Consensus        91 --------~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   91 --------FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             ---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --------ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence                    3467999998655443     45688999999999999887544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.46  E-value=2e-12  Score=112.96  Aligned_cols=111  Identities=19%  Similarity=0.159  Sum_probs=85.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+++.+|||+|||||++++.++..+ .+++|+|+++.|++.|+.|+...++.+  +.+...+...++.            
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~--i~~~~~D~~~l~~------------  244 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIED--FFVKRGDATKLPL------------  244 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCC--CeEEecchhcCCc------------
Confidence            4578899999999999998877765 569999999999999999998888763  5555555443321            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEeccCCCcHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGILSEQLPH  191 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  191 (225)
                                ..+.||+|++|+|+..            +..+++.+.+.|||||.+++......+..+
T Consensus       245 ----------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~  302 (329)
T TIGR01177       245 ----------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLES  302 (329)
T ss_pred             ----------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHH
Confidence                      3568999999998631            467899999999999999886444434443

This family is found exclusively in the Archaea.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.45  E-value=1.3e-12  Score=106.17  Aligned_cols=135  Identities=16%  Similarity=0.142  Sum_probs=90.4

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhh---ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL---IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~---~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +..+.++++..    .++++..+.+.+-..   ..++.+|||+|||+|.+++.++..++.+++++|+++.+++.+++|+.
T Consensus        22 g~~l~~~~~~~----~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~   97 (199)
T PRK10909         22 GRKLPVPDSPG----LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLA   97 (199)
T ss_pred             CCEeCCCCCCC----cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH
Confidence            34444444333    356666654433222   13578999999999999997666667889999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHH--hccCCeE
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVS--YAKPGAV  178 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~--~LkpgG~  178 (225)
                      .+++.  ++.+...+....           +        ..  ....||+|++|||+..  ...+++.+..  +|+|+++
T Consensus        98 ~~~~~--~v~~~~~D~~~~-----------l--------~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~i  154 (199)
T PRK10909         98 TLKAG--NARVVNTNALSF-----------L--------AQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEAL  154 (199)
T ss_pred             HhCCC--cEEEEEchHHHH-----------H--------hh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcE
Confidence            88865  355554432111           0        00  2346999999999632  3445555544  3799999


Q ss_pred             EEEeccCCC
Q 041459          179 VGISGILSE  187 (225)
Q Consensus       179 l~~~~~~~~  187 (225)
                      +++++....
T Consensus       155 v~ve~~~~~  163 (199)
T PRK10909        155 IYVESEVEN  163 (199)
T ss_pred             EEEEecCCC
Confidence            999765443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.44  E-value=1.5e-12  Score=115.84  Aligned_cols=128  Identities=22%  Similarity=0.300  Sum_probs=90.9

Q ss_pred             eEEecccceecCCCCchH-------HHHHHHH-Hhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Q 041459           28 NIILNPGLAFGTGEHATT-------KLCLLLL-QSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAH   98 (225)
Q Consensus        28 ~~~~~~~~~f~~~~~~~~-------~~~~~~L-~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~   98 (225)
                      .+.++++|.|+++.+...       ......+ ... ++++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+
T Consensus       128 ~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~  207 (383)
T PRK11705        128 EAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQ  207 (383)
T ss_pred             HHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            445688888888776421       1111222 222 4578899999999999999888754457999999999999999


Q ss_pred             HHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhc
Q 041459           99 QNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYA  173 (225)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~L  173 (225)
                      ++..  ++.   +.+...+...                         ..++||.|++..++++     +..+++.+.++|
T Consensus       208 ~~~~--~l~---v~~~~~D~~~-------------------------l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L  257 (383)
T PRK11705        208 ERCA--GLP---VEIRLQDYRD-------------------------LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL  257 (383)
T ss_pred             HHhc--cCe---EEEEECchhh-------------------------cCCCCCEEEEeCchhhCChHHHHHHHHHHHHHc
Confidence            8863  221   3343333211                         1457999999877654     367899999999


Q ss_pred             cCCeEEEEeccC
Q 041459          174 KPGAVVGISGIL  185 (225)
Q Consensus       174 kpgG~l~~~~~~  185 (225)
                      ||||.+++.++.
T Consensus       258 kpGG~lvl~~i~  269 (383)
T PRK11705        258 KPDGLFLLHTIG  269 (383)
T ss_pred             CCCcEEEEEEcc
Confidence            999999987654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.44  E-value=3.7e-12  Score=104.04  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=77.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++..+++. ..+.+...++....           
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~-----------  137 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGL-----------  137 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCC-----------
Confidence            456789999999999999888764 2 468999999999999999999877764 23555555543221           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                 ....+||+|+++.....+.   +.+.+.|+|||.+++.
T Consensus       138 -----------~~~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        138 -----------EKHAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIP  172 (205)
T ss_pred             -----------ccCCCccEEEEccCcchhh---HHHHHhcCcCcEEEEE
Confidence                       1346899999987765433   5778899999999874

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.44  E-value=2e-12  Score=112.23  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=100.3

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +..+.+.|+..|.+........ .+.+...+  .++.+|||+|||+|.+++.+++.+ .+++|+|+++.+++.|++|+..
T Consensus       140 ~~~~~~~~~sF~Q~n~~~~~~l-~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~  217 (315)
T PRK03522        140 GVPLFIRPQSFFQTNPAVAAQL-YATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAE  217 (315)
T ss_pred             CEEEEECCCeeeecCHHHHHHH-HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHH
Confidence            3456667776565544333332 22222222  257899999999999999999875 6799999999999999999998


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +++.  ++.+...+...+..       .              ....||+|++|||.......+......++|++++|++|
T Consensus       218 ~~l~--~v~~~~~D~~~~~~-------~--------------~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        218 LGLT--NVQFQALDSTQFAT-------A--------------QGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSC  274 (315)
T ss_pred             cCCC--ceEEEEcCHHHHHH-------h--------------cCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEEC
Confidence            8874  35666554432200       0              23469999999997654333434445578999999999


Q ss_pred             cCCCcHHHHHHH
Q 041459          184 ILSEQLPHIINR  195 (225)
Q Consensus       184 ~~~~~~~~~~~~  195 (225)
                      .......++...
T Consensus       275 ~p~t~~rd~~~l  286 (315)
T PRK03522        275 NAQTMAKDLAHL  286 (315)
T ss_pred             CcccchhHHhhc
Confidence            988777776554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.44  E-value=1.7e-12  Score=110.21  Aligned_cols=105  Identities=28%  Similarity=0.442  Sum_probs=80.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|+++....++.  .+.+...+...++.          
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~~~d~~~l~~----------  142 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFRLGEIEALPV----------  142 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEEEcchhhCCC----------
Confidence            457899999999999988776653 3 357999999999999999998777664  34554444433211          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  +++.||+|+++..+++   ...++++++++|||||.++++++
T Consensus       143 ------------~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        143 ------------ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             ------------CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                        4568999999876643   46789999999999999999755

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.43  E-value=2.9e-12  Score=105.41  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=76.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|.++..+++..  ..+++++|+++.+++.|++++..+++.+  +.+...+.....           
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~--v~~~~~d~~~~~-----------  141 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN--VIVIVGDGTQGW-----------  141 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC--eEEEECCcccCC-----------
Confidence            4578999999999999999888753  3469999999999999999998888743  556655543220           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                 .....||+|+++.+...   +.+.+.+.|||||++++.
T Consensus       142 -----------~~~~~fD~Ii~~~~~~~---~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       142 -----------EPLAPYDRIYVTAAGPK---IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             -----------cccCCCCEEEEcCCccc---ccHHHHHhcCcCcEEEEE
Confidence                       03457999998765543   345677899999999884

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.43  E-value=1.7e-12  Score=109.31  Aligned_cols=96  Identities=20%  Similarity=0.233  Sum_probs=74.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++    +     +.+...+...+.             
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~-------------   85 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-----VDARTGDVRDWK-------------   85 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-----CcEEEcChhhCC-------------
Confidence            46789999999999999988775 456899999999999998753    2     234444433221             


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                +.++||+|+++.++++   ...++.++++.|||||.+++...
T Consensus        86 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         86 ----------PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             ----------CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence                      3568999999988766   46689999999999999998643

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.42  E-value=1.9e-12  Score=104.82  Aligned_cols=120  Identities=15%  Similarity=0.122  Sum_probs=88.3

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +..++||+|||+|.++..+++ .+..+++|+|+++.+++.|++++...++.+  +.+...+...+.              
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n--i~~i~~d~~~~~--------------   79 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN--LHVLCGDANELL--------------   79 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC--EEEEccCHHHHH--------------
Confidence            456899999999999998776 566789999999999999999988777653  555554432210              


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                           +...+.+.+|.|++++|..++           ..+++.+.+.|||||.+++..........+.+.+.+
T Consensus        80 -----~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~  147 (194)
T TIGR00091        80 -----DKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE  147 (194)
T ss_pred             -----HhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence                 001134589999998764321           468999999999999999976655555555556554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00452 methyltransferase, putative

Probab=99.41  E-value=1.9e-12  Score=112.02  Aligned_cols=104  Identities=19%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++++|||+|||+|.++..++..+...++|+|.|+.++..++......... ..+.+...+...++              
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~~~~ie~lp--------------  184 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILEPLGIEQLH--------------  184 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEEECCHHHCC--------------
Confidence            467899999999999999888888778999999999998754432221111 22334333332221              


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ....||+|+++..+++   +...+.++++.|||||.+++.+.
T Consensus       185 ---------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       185 ---------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             ---------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence                     2357999999887765   45789999999999999998643

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.41  E-value=4e-12  Score=110.71  Aligned_cols=103  Identities=19%  Similarity=0.242  Sum_probs=77.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++++|||+|||+|.++..++..+...|+|+|.++.++..++......+.. ..+.+...+...++               
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp---------------  185 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLP---------------  185 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCC---------------
Confidence            67899999999999999999888778999999999987655433322211 23455544433331               


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ..+.||+|+|...+++   +..++.++++.|+|||.+++.++
T Consensus       186 --------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        186 --------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             --------CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence                    2567999999877755   56789999999999999998643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.41  E-value=3.8e-12  Score=116.26  Aligned_cols=105  Identities=21%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++.....   ..+.+...+....+.            
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~---~~v~~~~~d~~~~~~------------  328 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK---CSVEFEVADCTKKTY------------  328 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC---CceEEEEcCcccCCC------------
Confidence            34678999999999999998887545579999999999999998764222   235555555433211            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ++++||+|++...+.+   ...++.+++++|||||.++++++.
T Consensus       329 ----------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        329 ----------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             ----------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence                      4568999999876654   567899999999999999997653

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.41  E-value=9e-12  Score=102.89  Aligned_cols=110  Identities=22%  Similarity=0.304  Sum_probs=82.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.++..+++. +..+++++|+++.+++.++.+...      ++.+...+....+.             
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~-------------   94 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE------NVQFICGDAEKLPL-------------   94 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC------CCeEEecchhhCCC-------------
Confidence            4578999999999999988775 456799999999999998876541      23444444433211             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  195 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (225)
                               ++++||+|+++.++++   ...++..+.++|||||.+++.++.......+...
T Consensus        95 ---------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~  147 (240)
T TIGR02072        95 ---------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS  147 (240)
T ss_pred             ---------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence                     4568999999888764   5678999999999999999987766655554443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.39  E-value=6e-12  Score=106.03  Aligned_cols=97  Identities=22%  Similarity=0.299  Sum_probs=75.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++..       .+.+...+...+.             
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d~~~~~-------------   89 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEADIASWQ-------------   89 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECchhccC-------------
Confidence            46789999999999999988764 56789999999999999987642       1334444432221             


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                ...+||+|+++..+++   ...++.++.+.|||||.+++..
T Consensus        90 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         90 ----------PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ----------CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence                      3458999999988765   4678999999999999998864

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.39  E-value=1.8e-11  Score=99.11  Aligned_cols=132  Identities=17%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             CchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        42 ~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      ..+.......+...  ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++|+..+++.  .+.+...+.
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~   99 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSA   99 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECch
Confidence            34555555544333  346789999999999999988764 4578999999999999999999877764  255554443


Q ss_pred             CCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                      ...       ...              ....+|.++.... ..+..+++.+.+.|+|||.+++.....+....+.+.++
T Consensus       100 ~~~-------~~~--------------~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~  156 (196)
T PRK07402        100 PEC-------LAQ--------------LAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLA  156 (196)
T ss_pred             HHH-------Hhh--------------CCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHH
Confidence            210       000              1223566665432 34577899999999999999997665444444444444

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.38  E-value=3.4e-11  Score=100.38  Aligned_cols=153  Identities=16%  Similarity=0.211  Sum_probs=104.1

Q ss_pred             CcceeEEecccceecCCCCchH-HHHHHHHHhh----ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHH
Q 041459           24 VQATNIILNPGLAFGTGEHATT-KLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSA   97 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~-~~~~~~L~~~----~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a   97 (225)
                      .++..+...|+.-.   +++-+ ..+...+...    -.++..++|+|||+|.+++.++. .+..+++|+|.|+.++..|
T Consensus       112 F~~l~l~~~pgVlI---PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La  188 (328)
T KOG2904|consen  112 FGDLDLVCKPGVLI---PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLA  188 (328)
T ss_pred             cCCceEEecCCeee---cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHH
Confidence            45667777777543   33333 3333333222    11456899999999999998765 6888899999999999999


Q ss_pred             HHHHHhcCCCCCcceEEEec--CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------------
Q 041459           98 HQNAALNNIGPKKMKLHLVP--DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------  161 (225)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------  161 (225)
                      .+|+.++.+.+ .+.+...+  .+.+..            .       -...+++|++++||||-.              
T Consensus       189 ~eN~qr~~l~g-~i~v~~~~me~d~~~~------------~-------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~y  248 (328)
T KOG2904|consen  189 KENAQRLKLSG-RIEVIHNIMESDASDE------------H-------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLY  248 (328)
T ss_pred             HHHHHHHhhcC-ceEEEecccccccccc------------c-------ccccCceeEEecCCCcccccchhhcCchheec
Confidence            99999988874 45444322  221100            0       004578999999999621              


Q ss_pred             ---------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          162 ---------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       162 ---------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                     +..+..-+.+.|+|||.+.+.-....+...+...+...
T Consensus       249 Ep~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s  301 (328)
T KOG2904|consen  249 EPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMIS  301 (328)
T ss_pred             CchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHh
Confidence                           23456778899999999999866666666666665543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.38  E-value=4.8e-12  Score=98.22  Aligned_cols=96  Identities=28%  Similarity=0.366  Sum_probs=73.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.         ..   ............             
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~---~~~~~~~~~~~~-------------   73 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RN---VVFDNFDAQDPP-------------   73 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TT---SEEEEEECHTHH-------------
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hh---hhhhhhhhhhhh-------------
Confidence            35688999999999999999988877 89999999999887         10   111111110100             


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                               .+.+.||+|+++..+++   ...+++.+.++|||||.++++....
T Consensus        74 ---------~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   74 ---------FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             ---------CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             ---------ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence                     04678999999988876   5678999999999999999987754

...

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.38  E-value=5.4e-12  Score=112.06  Aligned_cols=144  Identities=15%  Similarity=0.187  Sum_probs=99.8

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +..+.++|+..|.+... ....+...+....  .++.+|||+|||+|.+++.++..+ .+++|+|+++.+++.|++|+..
T Consensus       200 g~~~~~~~~~F~Q~n~~-~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~  277 (374)
T TIGR02085       200 DVPLVIRPQSFFQTNPK-VAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQM  277 (374)
T ss_pred             CEEEEECCCccccCCHH-HHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHH
Confidence            45677777766655443 3333333333322  256799999999999999988765 6799999999999999999998


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (225)
                      +++.  ++.+...+...+.       .            .  ....||+|++|||..... .+++.+. .++|++++|++
T Consensus       278 ~~~~--~~~~~~~d~~~~~-------~------------~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       278 LGLD--NLSFAALDSAKFA-------T------------A--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             cCCC--cEEEEECCHHHHH-------H------------h--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            8875  3555554432210       0            0  123599999999986543 4445454 57999999999


Q ss_pred             ccCCCcHHHHHHH
Q 041459          183 GILSEQLPHIINR  195 (225)
Q Consensus       183 ~~~~~~~~~~~~~  195 (225)
                      |......+++...
T Consensus       334 c~p~TlaRDl~~L  346 (374)
T TIGR02085       334 CNAQTMAKDIAEL  346 (374)
T ss_pred             eCHHHHHHHHHHh
Confidence            9877666776655

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.37  E-value=3e-12  Score=92.71  Aligned_cols=91  Identities=29%  Similarity=0.488  Sum_probs=67.7

Q ss_pred             EEEEcccccHHHHHHHhc---C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           62 FLDYGTGSGILGIAAIKF---G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        62 vlDiGcGtG~~~~~l~~~---~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      |||+|||+|..+..+++.   + ..+++|+|+|+.+++.++++....+.   .+++...+...++.              
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~--------------   63 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPF--------------   63 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHH--------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcc--------------
Confidence            799999999999988765   2 37899999999999999999876554   36677766654421              


Q ss_pred             cccccCCCCCCceeEEEeccc-hhH-----HHHHHHHHHHhccCCe
Q 041459          138 SHEIRGISETEKYDVVIANIL-LNP-----LLQLADHIVSYAKPGA  177 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~-~~~-----~~~~l~~~~~~LkpgG  177 (225)
                              ..++||+|++... +++     ...+++++.+.|+|||
T Consensus        64 --------~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   64 --------SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             --------HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             --------cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence                    4668999999433 433     5678999999999998

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.37  E-value=7.1e-12  Score=103.28  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=79.3

Q ss_pred             CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      ++|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...++. .++.+...+....+                
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~----------------   63 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP----------------   63 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCC----------------
Confidence            46999999999999988764 4568999999999999999998877765 34555554432211                


Q ss_pred             ccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          139 HEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                             ..++||+|++..++++   ...+++.+.++|||||.+++.++.
T Consensus        64 -------~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       64 -------FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             -------CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence                   2357999999766654   467899999999999999987653

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.37  E-value=1.5e-11  Score=100.98  Aligned_cols=100  Identities=18%  Similarity=0.245  Sum_probs=76.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++...++.  ++.+...++....           
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~~gd~~~~~-----------  140 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVIVGDGTLGY-----------  140 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCC-----------
Confidence            457899999999999999888875 3 368999999999999999999877764  3666666653321           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                 .....||+|+++.....   +...+.+.|||||.+++.
T Consensus       141 -----------~~~~~fD~I~~~~~~~~---~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        141 -----------EENAPYDRIYVTAAGPD---IPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             -----------CcCCCcCEEEECCCccc---chHHHHHhhCCCcEEEEE
Confidence                       13568999998765443   334667789999998884

>PLN02672 methionine S-methyltransferase

Probab=99.37  E-value=2.4e-11  Score=118.91  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=102.5

Q ss_pred             CCcceeEEecccceecCCCCchHHHHHHHHHhhcc---CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHH
Q 041459           23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAH   98 (225)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~---~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~   98 (225)
                      ...+..+.++|+...   +++.+..+.+.|.....   ++.+|+|+|||+|.+++.+++. +..+++|+|+|+.+++.|+
T Consensus        83 ~F~~l~~~V~p~VLI---PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~  159 (1082)
T PLN02672         83 NRKKLTMMEIPSIFI---PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW  159 (1082)
T ss_pred             EecCCceeeCCCccc---CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            344566777777432   45555555555543321   2468999999999999998864 5578999999999999999


Q ss_pred             HHHHhcCCCC--------------CcceEEEecCCCCCccccccccccccccccccccCCCC-CCceeEEEeccchhH--
Q 041459           99 QNAALNNIGP--------------KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE-TEKYDVVIANILLNP--  161 (225)
Q Consensus        99 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~--  161 (225)
                      +|+..++++.              +++.+...|.  +.                    .+.. ..+||+|++|||+-.  
T Consensus       160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl--~~--------------------~~~~~~~~fDlIVSNPPYI~~~  217 (1082)
T PLN02672        160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL--LG--------------------YCRDNNIELDRIVGCIPQILNP  217 (1082)
T ss_pred             HHHHHcCcccccccccccccccccccEEEEECch--hh--------------------hccccCCceEEEEECCCcCCCc
Confidence            9999876531              1233433332  10                    1111 236999999999510  


Q ss_pred             ---------------------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHH-HHHHh
Q 041459          162 ---------------------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHII-NRYSE  198 (225)
Q Consensus       162 ---------------------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~  198 (225)
                                                             ++.++..+.++|+|||.+++ +++..+...+. +.+..
T Consensus       218 e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~  293 (1082)
T PLN02672        218 NPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFER  293 (1082)
T ss_pred             chhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHH
Confidence                                                   24567888899999999987 57777777776 46554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.37  E-value=1.8e-11  Score=106.98  Aligned_cols=100  Identities=18%  Similarity=0.187  Sum_probs=76.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++ .+..+++++|+++.+++.|+++....     .+.+...+....+.            
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-----~i~~i~gD~e~lp~------------  174 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIIEGDAEDLPF------------  174 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-----CCeEEeccHHhCCC------------
Confidence            3578999999999999888765 35578999999999999999875422     23444444433211            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                +.+.||+|+++..+++   ....++++.+.|||||.+++.+
T Consensus       175 ----------~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        175 ----------PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             ----------CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence                      4568999999877654   4568999999999999998754

>PRK04266 fibrillarin; Provisional

Probab=99.37  E-value=3.1e-11  Score=100.04  Aligned_cols=103  Identities=19%  Similarity=0.193  Sum_probs=73.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.+++...  .  ++.....+.....     ....   
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~--nv~~i~~D~~~~~-----~~~~---  137 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K--NIIPILADARKPE-----RYAH---  137 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C--CcEEEECCCCCcc-----hhhh---
Confidence            557899999999999999998875 4468999999999999887766532  2  2444444432210     0000   


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEE
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~  181 (225)
                                 ...+||+|+++.+..+ ...++..+.+.|||||.+++
T Consensus       138 -----------l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        138 -----------VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             -----------ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence                       1346999998765432 24468899999999999999

>PRK06922 hypothetical protein; Provisional

Probab=99.36  E-value=1.1e-11  Score=115.19  Aligned_cols=104  Identities=16%  Similarity=0.197  Sum_probs=78.5

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|..+..+++ .+..+++|+|+++.|++.|+++....+.   .+.+...+...++              
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~---~ie~I~gDa~dLp--------------  480 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR---SWNVIKGDAINLS--------------  480 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---CeEEEEcchHhCc--------------
Confidence            578999999999999887775 5677899999999999999988654442   2344444433221              


Q ss_pred             ccccccCCCCCCceeEEEeccchhH----------------HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP----------------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                            ...++++||+|++++++++                ...+++++++.|||||.+++.+.
T Consensus       481 ------~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        481 ------SSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             ------cccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence                  0014678999999877653                35678999999999999999754

>PRK05785 hypothetical protein; Provisional

Probab=99.35  E-value=2.5e-11  Score=100.70  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=67.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||||.++..+++....+++|+|+|++|++.|+++.       .   ....+...++.             
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~---~~~~d~~~lp~-------------  106 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------D---KVVGSFEALPF-------------  106 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------c---eEEechhhCCC-------------
Confidence            357899999999999999888763457999999999999997641       1   22333333322             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPG  176 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~Lkpg  176 (225)
                               ++++||+|+++..+++   ....++++.+.|||.
T Consensus       107 ---------~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        107 ---------RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             ---------CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence                     5788999999887754   567899999999995

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.35  E-value=2.5e-11  Score=102.98  Aligned_cols=117  Identities=18%  Similarity=0.174  Sum_probs=85.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+|||+|..+..+++.  ....++++|+++.+++.+++|+..+++.+  +.+...+...+..          
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~--v~~~~~D~~~~~~----------  136 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN--VAVTNFDGRVFGA----------  136 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc--EEEecCCHHHhhh----------
Confidence            457899999999999999988764  24589999999999999999999888753  5555544432210          


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEecc-C-C
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI-L-S  186 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~-~-~  186 (225)
                                  ....||+|++++|..                         ...+++..+.++|||||++++++. . .
T Consensus       137 ------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       137 ------------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             ------------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence                        234699999987732                         124589999999999999988633 2 3


Q ss_pred             CcHHHHHHHH
Q 041459          187 EQLPHIINRY  196 (225)
Q Consensus       187 ~~~~~~~~~~  196 (225)
                      .+.+...+.+
T Consensus       205 ~Ene~vv~~~  214 (264)
T TIGR00446       205 EENEAVVDYL  214 (264)
T ss_pred             HHHHHHHHHH
Confidence            3434444443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.34  E-value=2.7e-13  Score=97.70  Aligned_cols=95  Identities=27%  Similarity=0.381  Sum_probs=58.9

Q ss_pred             EEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccc
Q 041459           63 LDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEI  141 (225)
Q Consensus        63 lDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (225)
                      ||+|||+|.++..+++ .+..+++++|+|+.|++.|++++....... ...+.....+...                   
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~-------------------   60 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFD-------------------   60 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----------------------
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhh-------------------
Confidence            7999999999998765 477889999999999988888887665432 1112222211110                   


Q ss_pred             cCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEE
Q 041459          142 RGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVV  179 (225)
Q Consensus       142 ~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l  179 (225)
                        ....++||+|++...+++   +..++.++.++|||||.+
T Consensus        61 --~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   61 --YDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             --cccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence              002358999999888766   467899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.34  E-value=1.6e-11  Score=102.41  Aligned_cols=109  Identities=11%  Similarity=0.204  Sum_probs=85.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++|||+|||+|+.++++++.  +..+++++|+++.+++.|++|+..+++. +++++..++....       +..+..+
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~-------L~~l~~~  139 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSA-------LDQLLNN  139 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHH-------HHHHHhC
Confidence            5789999999999988887653  4678999999999999999999999987 5667766554221       1111000


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                               .+.++||+|+++.....+..+++.+.+.|+|||++++..
T Consensus       140 ---------~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        140 ---------DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             ---------CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence                     024689999999887888899999999999999999743

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=2e-11  Score=110.44  Aligned_cols=142  Identities=16%  Similarity=0.183  Sum_probs=95.4

Q ss_pred             ecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459           37 FGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK  112 (225)
Q Consensus        37 f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~  112 (225)
                      |..|....+.....++...  +++|.+|||+|||+|..+..+++.  +..+++++|+++.+++.+++|+..+++.+  +.
T Consensus       229 f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~--v~  306 (434)
T PRK14901        229 YEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS--IK  306 (434)
T ss_pred             HhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe--EE
Confidence            4444444444444444332  457899999999999999988864  34689999999999999999999988763  55


Q ss_pred             EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHH
Q 041459          113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLAD  167 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~  167 (225)
                      +...+....+.    . ..             ...+.||.|++++|...                         ..+++.
T Consensus       307 ~~~~D~~~~~~----~-~~-------------~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~  368 (434)
T PRK14901        307 ILAADSRNLLE----L-KP-------------QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLE  368 (434)
T ss_pred             EEeCChhhccc----c-cc-------------cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHH
Confidence            65555433210    0 00             02457999999876310                         346799


Q ss_pred             HHHHhccCCeEEEEec-cC-C-CcHHHHHHHHHh
Q 041459          168 HIVSYAKPGAVVGISG-IL-S-EQLPHIINRYSE  198 (225)
Q Consensus       168 ~~~~~LkpgG~l~~~~-~~-~-~~~~~~~~~~~~  198 (225)
                      ++.++|||||++++++ .. . ++...+...+++
T Consensus       369 ~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~  402 (434)
T PRK14901        369 SLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR  402 (434)
T ss_pred             HHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence            9999999999988753 32 2 334444455544

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.33  E-value=1.2e-11  Score=111.78  Aligned_cols=150  Identities=21%  Similarity=0.208  Sum_probs=98.1

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      +..+.++|+..|.............++... +.++.+|||+|||+|.+++.+++.. .+++|+|+++.+++.|++|+..+
T Consensus       259 ~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~  337 (431)
T TIGR00479       259 DLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELN  337 (431)
T ss_pred             CEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHh
Confidence            456667777555543332322322222222 3456899999999999999988764 57999999999999999999988


Q ss_pred             CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEec
Q 041459          105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      ++.+  +.+...+....       +..+           ......||+|++++|... ...+++.+. .++|++++|++|
T Consensus       338 ~~~n--v~~~~~d~~~~-------l~~~-----------~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc  396 (431)
T TIGR00479       338 GIAN--VEFLAGTLETV-------LPKQ-----------PWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSC  396 (431)
T ss_pred             CCCc--eEEEeCCHHHH-------HHHH-----------HhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcC
Confidence            8753  55555443211       0000           002356999999999754 345555544 489999999998


Q ss_pred             cCCCcHHHHHHHHH
Q 041459          184 ILSEQLPHIINRYS  197 (225)
Q Consensus       184 ~~~~~~~~~~~~~~  197 (225)
                      .......++.....
T Consensus       397 ~p~tlard~~~l~~  410 (431)
T TIGR00479       397 NPATLARDLEFLCK  410 (431)
T ss_pred             CHHHHHHHHHHHHH
Confidence            76544445444433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.33  E-value=2e-11  Score=98.57  Aligned_cols=123  Identities=19%  Similarity=0.183  Sum_probs=87.7

Q ss_pred             CCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459           41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP  117 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~  117 (225)
                      .+|+...+.+.+-..+   -++.++||++||+|.+++.+++.|+..++++|.++.+++.+++|+..+++. +++.+...+
T Consensus        29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D  107 (189)
T TIGR00095        29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNS  107 (189)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehh
Confidence            5778877777664443   258899999999999999999998889999999999999999999988875 344555443


Q ss_pred             CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHH--HhccCCeEEEEe
Q 041459          118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIV--SYAKPGAVVGIS  182 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~--~~LkpgG~l~~~  182 (225)
                      ...+       +...           ......+|+|+.+||+..  ...+++.+.  .+|+++|++++.
T Consensus       108 ~~~~-------l~~~-----------~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       108 ALRA-------LKFL-----------AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             HHHH-------HHHh-----------hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence            3111       0000           001234899999999843  344444443  468899988884

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK08317 hypothetical protein; Provisional

Probab=99.33  E-value=5e-11  Score=98.27  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=77.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.++.+|||+|||+|.++..++..  +..+++++|+++.+++.|+++.....   ..+.+...+....+.          
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~----------   83 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFVRGDADGLPF----------   83 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEEecccccCCC----------
Confidence            446789999999999999988764  45789999999999999988733222   234444444332211          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                  ..+.||+|+++..+++   ...+++++.++|||||.+++.+
T Consensus        84 ------------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         84 ------------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ------------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence                        4568999999877654   5678999999999999998864

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=3.1e-11  Score=108.94  Aligned_cols=120  Identities=17%  Similarity=0.185  Sum_probs=86.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +.+|.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++|+..+++.   +.+...+.....            
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~---~~~~~~D~~~~~------------  306 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK---ATVIVGDARDPA------------  306 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEcCcccch------------
Confidence            4578999999999999999988753 368999999999999999999988764   344444443221            


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEecc---CC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGI---LS  186 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~---~~  186 (225)
                              ......+||.|++++|...                         ...++..+.++|||||.+++++.   ..
T Consensus       307 --------~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~  378 (427)
T PRK10901        307 --------QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE  378 (427)
T ss_pred             --------hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence                    0003467999999887421                         23678999999999999987643   23


Q ss_pred             CcHHHHHHHHHh
Q 041459          187 EQLPHIINRYSE  198 (225)
Q Consensus       187 ~~~~~~~~~~~~  198 (225)
                      ++...+...+++
T Consensus       379 Ene~~v~~~l~~  390 (427)
T PRK10901        379 ENEQQIKAFLAR  390 (427)
T ss_pred             hCHHHHHHHHHh
Confidence            344444455543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=2.6e-11  Score=109.53  Aligned_cols=124  Identities=12%  Similarity=0.168  Sum_probs=88.9

Q ss_pred             ecCCCCchHHHHHHHHHh--hccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459           37 FGTGEHATTKLCLLLLQS--LIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK  112 (225)
Q Consensus        37 f~~~~~~~~~~~~~~L~~--~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~  112 (225)
                      |..|....+.....++..  .+.+|.+|||+|||+|..+.++++.  +..+++++|+++.+++.+++++...++.+  +.
T Consensus       214 ~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~--v~  291 (431)
T PRK14903        214 IKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS--IE  291 (431)
T ss_pred             HHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe--EE
Confidence            444554444443333322  2457889999999999999988864  35789999999999999999999888753  55


Q ss_pred             EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHH
Q 041459          113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLAD  167 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~  167 (225)
                      +...+...++.        .             ..++||.|++++|..                         ...+++.
T Consensus       292 ~~~~Da~~l~~--------~-------------~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~  350 (431)
T PRK14903        292 IKIADAERLTE--------Y-------------VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVS  350 (431)
T ss_pred             EEECchhhhhh--------h-------------hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHH
Confidence            55555433210        0             245799999987751                         1256789


Q ss_pred             HHHHhccCCeEEEEec
Q 041459          168 HIVSYAKPGAVVGISG  183 (225)
Q Consensus       168 ~~~~~LkpgG~l~~~~  183 (225)
                      ++.+.|||||.+++++
T Consensus       351 ~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        351 QAWKLLEKGGILLYST  366 (431)
T ss_pred             HHHHhcCCCCEEEEEE
Confidence            9999999999988853

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.32  E-value=1.8e-11  Score=100.36  Aligned_cols=122  Identities=17%  Similarity=0.187  Sum_probs=83.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+|||+|||+|.++..+++. + ...|+|+|+++ +          +...  .+.+...+....+     .+..++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~--~v~~i~~D~~~~~-----~~~~i~  110 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV--GVDFLQGDFRDEL-----VLKALL  110 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC--CcEEEecCCCChH-----HHHHHH
Confidence            467889999999999999988775 2 36899999988 1          1222  2445555443320     000000


Q ss_pred             cccccccccCCCCCCceeEEEeccchh--------H------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN--------P------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~--------~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                      .         -....+||+|++++..+        .      ...+++.+.+.|||||.+++..+..+...++...++..
T Consensus       111 ~---------~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~  181 (209)
T PRK11188        111 E---------RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  181 (209)
T ss_pred             H---------HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhC
Confidence            0         00457899999976321        1      24578999999999999999888888888888887766


Q ss_pred             hhhhc
Q 041459          200 LEDIL  204 (225)
Q Consensus       200 ~~~~~  204 (225)
                      |..++
T Consensus       182 f~~v~  186 (209)
T PRK11188        182 FTKVK  186 (209)
T ss_pred             ceEEE
Confidence            65444

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.32  E-value=2.6e-11  Score=107.16  Aligned_cols=116  Identities=12%  Similarity=0.168  Sum_probs=87.3

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+..+||+|||+|.++..+|+ .+...++|+|+++.++..|.+++..+++.+  +.+...++..+       ...     
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N--V~~i~~DA~~l-------l~~-----  187 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN--LLIINYDARLL-------LEL-----  187 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc--EEEEECCHHHh-------hhh-----
Confidence            456899999999999999876 567789999999999999999998888764  66665554321       001     


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH---------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL---------LQLADHIVSYAKPGAVVGISGILSEQLPHIINR  195 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (225)
                              .+++++|.|++++|..+.         ..+++.+.++|+|||.+.+.+...+......+.
T Consensus       188 --------~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~  247 (390)
T PRK14121        188 --------LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLEL  247 (390)
T ss_pred             --------CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHH
Confidence                    157889999999876432         467999999999999999965544333333333

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.31  E-value=1.1e-11  Score=99.66  Aligned_cols=138  Identities=20%  Similarity=0.230  Sum_probs=90.8

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhhc----cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLI----KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~----~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      ..+..+..+++.    ..+||+..+.+.+-+.+    -.|.++||++||||.+++.+++.|+.+++.||.++.+++..++
T Consensus         8 ~kgr~l~~p~~~----~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~   83 (183)
T PF03602_consen    8 YKGRKLKTPKGD----NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKK   83 (183)
T ss_dssp             TTT-EEE-TT------TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHH
T ss_pred             cCCCEecCCCCC----CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence            344555555543    36888888887765442    2689999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHH--Hhcc
Q 041459          100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIV--SYAK  174 (225)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~--~~Lk  174 (225)
                      |+...+..+ ++.+...+...+       +...           .....+||+|+++|||..   +..+++.+.  .+|+
T Consensus        84 N~~~l~~~~-~~~v~~~d~~~~-------l~~~-----------~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~  144 (183)
T PF03602_consen   84 NLEKLGLED-KIRVIKGDAFKF-------LLKL-----------AKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN  144 (183)
T ss_dssp             HHHHHT-GG-GEEEEESSHHHH-------HHHH-----------HHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE
T ss_pred             HHHHhCCCc-ceeeeccCHHHH-------HHhh-----------cccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC
Confidence            999888663 344444332110       0000           003678999999999853   366777776  7899


Q ss_pred             CCeEEEEecc
Q 041459          175 PGAVVGISGI  184 (225)
Q Consensus       175 pgG~l~~~~~  184 (225)
                      ++|.+++...
T Consensus       145 ~~~~ii~E~~  154 (183)
T PF03602_consen  145 EDGLIIIEHS  154 (183)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCEEEEEEec
Confidence            9999998543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.31  E-value=4.3e-11  Score=101.83  Aligned_cols=119  Identities=20%  Similarity=0.227  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHhc-C---CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           44 TTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKF-G---AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        44 ~~~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~~-~---~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      ....+...+.... .++.+|||+|||+|.++..+++. +   ...++|+|+|+.+++.|+++..       .+.+...+.
T Consensus        70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~-------~~~~~~~d~  142 (272)
T PRK11088         70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP-------QVTFCVASS  142 (272)
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC-------CCeEEEeec
Confidence            3333334444332 34578999999999999887753 2   2369999999999999976531       234555444


Q ss_pred             CCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459          119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  195 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (225)
                      ..++.                      ++++||+|++....    ..++++.+.|||||.+++.........++.+.
T Consensus       143 ~~lp~----------------------~~~sfD~I~~~~~~----~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~  193 (272)
T PRK11088        143 HRLPF----------------------ADQSLDAIIRIYAP----CKAEELARVVKPGGIVITVTPGPRHLFELKGL  193 (272)
T ss_pred             ccCCC----------------------cCCceeEEEEecCC----CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence            43322                      46789999986542    23578899999999999987776666665544

>PRK00811 spermidine synthase; Provisional

Probab=99.31  E-value=7.7e-11  Score=100.92  Aligned_cols=140  Identities=13%  Similarity=0.134  Sum_probs=96.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCcceEEEecCCCCCccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN---IGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++||++|||+|.++..+++. +..+++++|+++.+++.|++.+....   ....++.+...++..+           +
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-----------l  144 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-----------V  144 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-----------H
Confidence            5689999999999999998876 67789999999999999999876432   1234566666655332           1


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-----H--HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-----P--LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~--~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~~  202 (225)
                      .        .  ..++||+|+++.+..     .  ..++++.+.+.|+|||++++..-.    ......+.+.+++.|..
T Consensus       145 ~--------~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~  214 (283)
T PRK00811        145 A--------E--TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPI  214 (283)
T ss_pred             h--------h--CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence            0        0  356899999974321     1  256788999999999999884221    12334455555655554


Q ss_pred             hccc-------ccCCceEEEeee
Q 041459          203 ILLS-------EMDDWTCVSGTK  218 (225)
Q Consensus       203 ~~~~-------~~~~w~~~~~~k  218 (225)
                      +...       ..+.|.-+.+.+
T Consensus       215 v~~~~~~vp~~~~~~w~f~~as~  237 (283)
T PRK00811        215 VRPYQAAIPTYPSGLWSFTFASK  237 (283)
T ss_pred             EEEEEeECCcccCchheeEEeec
Confidence            4432       247788777776

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.31  E-value=5.3e-11  Score=98.42  Aligned_cols=106  Identities=19%  Similarity=0.235  Sum_probs=80.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|.++..++...  ..+++++|+++.+++.++++...++.. ..+.+...+....+.            
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------  117 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPF------------  117 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCC------------
Confidence            57899999999999999888754  478999999999999999987654443 234454444332210            


Q ss_pred             cccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                ..+.||+|+++..++   ....++..+.++|+|||.+++.++..
T Consensus       118 ----------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  161 (239)
T PRK00216        118 ----------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK  161 (239)
T ss_pred             ----------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence                      356899999876654   35678999999999999998865543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.29  E-value=1.9e-11  Score=99.36  Aligned_cols=135  Identities=24%  Similarity=0.317  Sum_probs=92.8

Q ss_pred             CCCCCCCcceeEEeccc-ceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHH
Q 041459           18 WSTPPDVQATNIILNPG-LAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIK   95 (225)
Q Consensus        18 ~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~   95 (225)
                      +++.+++.++.+.+|+. ..|.++. ...   ...+...++++.+|+|++||-|.+++.+++ .....|+++|++|.+++
T Consensus        64 ~~t~~~E~G~~f~~D~~kvyfs~rl-~~E---r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~  139 (200)
T PF02475_consen   64 TETIHKENGIRFKVDLSKVYFSPRL-STE---RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE  139 (200)
T ss_dssp             SEEEEEETTEEEEEETTTS---GGG-HHH---HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH
T ss_pred             eEEEEEeCCEEEEEccceEEEcccc-HHH---HHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH
Confidence            56778999999999999 4444332 111   223445577899999999999999999887 45677999999999999


Q ss_pred             HHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccC
Q 041459           96 SAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKP  175 (225)
Q Consensus        96 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkp  175 (225)
                      ..++|+..|++. +.+.....|+..+.                       +...+|.|+++.|.... .++..+..++++
T Consensus       140 ~L~~Ni~lNkv~-~~i~~~~~D~~~~~-----------------------~~~~~drvim~lp~~~~-~fl~~~~~~~~~  194 (200)
T PF02475_consen  140 YLKENIRLNKVE-NRIEVINGDAREFL-----------------------PEGKFDRVIMNLPESSL-EFLDAALSLLKE  194 (200)
T ss_dssp             HHHHHHHHTT-T-TTEEEEES-GGG--------------------------TT-EEEEEE--TSSGG-GGHHHHHHHEEE
T ss_pred             HHHHHHHHcCCC-CeEEEEcCCHHHhc-----------------------CccccCEEEECChHHHH-HHHHHHHHHhcC
Confidence            999999999988 46666666654431                       36789999998875433 467778889999


Q ss_pred             CeEEEE
Q 041459          176 GAVVGI  181 (225)
Q Consensus       176 gG~l~~  181 (225)
                      ||++.+
T Consensus       195 ~g~ihy  200 (200)
T PF02475_consen  195 GGIIHY  200 (200)
T ss_dssp             EEEEEE
T ss_pred             CcEEEC
Confidence            998753

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.29  E-value=6.4e-11  Score=106.91  Aligned_cols=122  Identities=17%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +.+|.+|||+|||+|..+..+++. +..+++++|+++.+++.+++|+...++.   +.+...+++....           
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d~~~~-----------  301 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGDGRGP-----------  301 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeccccccc-----------
Confidence            457899999999999999998874 5578999999999999999999988875   2333333322100           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEeccC--C-
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGIL--S-  186 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~-  186 (225)
                             ........||.|++++|...                         ...++.++.++|||||.+++++..  . 
T Consensus       302 -------~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~  374 (426)
T TIGR00563       302 -------SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE  374 (426)
T ss_pred             -------cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence                   00003457999998766311                         246899999999999999986332  2 


Q ss_pred             CcHHHHHHHHHh
Q 041459          187 EQLPHIINRYSE  198 (225)
Q Consensus       187 ~~~~~~~~~~~~  198 (225)
                      ++...+...+.+
T Consensus       375 Ene~~v~~~l~~  386 (426)
T TIGR00563       375 ENSEQIKAFLQE  386 (426)
T ss_pred             hCHHHHHHHHHh
Confidence            333334444443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.29  E-value=1.2e-10  Score=95.50  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=76.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++...++.+  +.+...+....              
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~--------------  138 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN--VSVRHGDGWKG--------------  138 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc--eEEEECCcccC--------------
Confidence            4467899999999999998877764 479999999999999999998877653  55555443211              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                              +...++||+|+++.....+   ...+.+.|+|||.+++..
T Consensus       139 --------~~~~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        139 --------WPAYAPFDRILVTAAAPEI---PRALLEQLKEGGILVAPV  175 (212)
T ss_pred             --------CCcCCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEEE
Confidence                    0134689999998765544   456788999999998853

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=2.4e-11  Score=103.24  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=73.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe--cCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV--PDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  135 (225)
                      .|++|||||||+|+++..++..|++.|+|+|-++......+......+..   ......  ..+.+              
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~---~~~~~lplgvE~L--------------  177 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD---PPVFELPLGVEDL--------------  177 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC---ccEEEcCcchhhc--------------
Confidence            69999999999999999999999999999999887776654433333322   112221  12222              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHH---HHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~---~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ...+.||+|+|..+++|.   ...+..+...|++||.+++.
T Consensus       178 ---------p~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  178 ---------PNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             ---------cccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence                     135689999999888774   46788899999999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=5.7e-11  Score=98.44  Aligned_cols=124  Identities=25%  Similarity=0.278  Sum_probs=99.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.+|++|+|.|+|+|.++.+++.  .+..+++..|+.+..++.|++|+...++.+ .+.....|....            
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d-~v~~~~~Dv~~~------------  158 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD-RVTLKLGDVREG------------  158 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc-ceEEEecccccc------------
Confidence            56899999999999999999886  356899999999999999999999888774 355555443322            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL  205 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (225)
                                 ...+.||.|+.+.|-.  -++++++.+.|||||.+++-+...++.....+.+++. +..++.
T Consensus       159 -----------~~~~~vDav~LDmp~P--W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~  218 (256)
T COG2519         159 -----------IDEEDVDAVFLDLPDP--WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA  218 (256)
T ss_pred             -----------ccccccCEEEEcCCCh--HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence                       1344899999876544  6778999999999999999888888888888888876 544444

>PHA03412 putative methyltransferase; Provisional

Probab=99.29  E-value=4.1e-11  Score=99.10  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=68.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+.+|||+|||+|.+++.+++.    +..+++++|+++.+++.|++|...       +.+...+.....           
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-------~~~~~~D~~~~~-----------  110 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-------ATWINADALTTE-----------  110 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-------CEEEEcchhccc-----------
Confidence            4689999999999999987763    346899999999999999987531       334443332210           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---------------HHHHHHHHHHhccCCeEEE
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---------------LLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------~~~~l~~~~~~LkpgG~l~  180 (225)
                                  ...+||+|++|||+..               ...++..+.+++++|+.|+
T Consensus       111 ------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL  160 (241)
T PHA03412        111 ------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII  160 (241)
T ss_pred             ------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence                        2458999999999742               3457888888777777644

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.28  E-value=6.2e-11  Score=97.54  Aligned_cols=99  Identities=23%  Similarity=0.368  Sum_probs=73.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...+.. ..+.+...+....               
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~---------------  116 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSL---------------  116 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhC---------------
Confidence            357899999999999999988764 47999999999999999998766543 2345554443322               


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                .++||+|++...+.+     ...++.++.+.+++++++.+.
T Consensus       117 ----------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       117 ----------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             ----------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence                      267999998655432     345688888888887766653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=1e-10  Score=106.13  Aligned_cols=104  Identities=21%  Similarity=0.229  Sum_probs=80.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+|.+|||+|||+|..+..+++.  +..+++++|+++.+++.+++++...++.  .+.+...+...+.           
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~-----------  314 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFS-----------  314 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccc-----------
Confidence            346889999999999999887763  3468999999999999999999988875  3555555543321           


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  +...||+|++++|..                         ....++..+.+.|||||++++++.
T Consensus       315 ------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        315 ------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             ------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                        345799999986631                         123579999999999999998654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=6.4e-11  Score=107.45  Aligned_cols=104  Identities=20%  Similarity=0.298  Sum_probs=80.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.++.+|||+|||+|..+..+++.  +..+++++|+++.+++.+++|+..+++.+  +.+...+...+..          
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~--v~~~~~D~~~~~~----------  315 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN--IETKALDARKVHE----------  315 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCCcccccc----------
Confidence            346889999999999999998864  45789999999999999999999888753  5555555433210          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               .  ..+.||+|++++|...                         ...++..+.+.|||||.++++
T Consensus       316 ---------~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        316 ---------K--FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             ---------h--hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                     0  1257999999887310                         235789999999999999875

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.3e-11  Score=96.53  Aligned_cols=76  Identities=36%  Similarity=0.524  Sum_probs=64.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .|.+|+|+|||||.+++.++-+|+.+|+|+|+++++++.+++|.....   ..+.+...+...+                
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~----------------  105 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDF----------------  105 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhc----------------
Confidence            578999999999999999999999999999999999999999998733   3466666555443                


Q ss_pred             cccccCCCCCCceeEEEeccchhH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                               ..++|++++|||+..
T Consensus       106 ---------~~~~dtvimNPPFG~  120 (198)
T COG2263         106 ---------RGKFDTVIMNPPFGS  120 (198)
T ss_pred             ---------CCccceEEECCCCcc
Confidence                     567999999999854

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.27  E-value=9e-11  Score=93.65  Aligned_cols=126  Identities=24%  Similarity=0.258  Sum_probs=91.9

Q ss_pred             CCCCchHHHHHHHHHhhcc----CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE
Q 041459           39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH  114 (225)
Q Consensus        39 ~~~~~~~~~~~~~L~~~~~----~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~  114 (225)
                      .+.+||+..+.+.|=+.+.    .|.++||+++|||.+++.+++.|+.+++.+|.+..+....++|+...++.. ...+.
T Consensus        20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~-~~~~~   98 (187)
T COG0742          20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG-EARVL   98 (187)
T ss_pred             CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc-ceEEE
Confidence            4578999999887755543    478999999999999999999999999999999999999999998877552 33343


Q ss_pred             EecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--H--HHHHHH--HHHhccCCeEEEEecc
Q 041459          115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--L--LQLADH--IVSYAKPGAVVGISGI  184 (225)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~--~~~l~~--~~~~LkpgG~l~~~~~  184 (225)
                      ..+...+                   +++......||+|+.+|||+.  .  ...+..  -..+|+|+|.+++..-
T Consensus        99 ~~da~~~-------------------L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742          99 RNDALRA-------------------LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             eecHHHH-------------------HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            3332210                   111112335999999999972  2  112222  4577999999999533

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.26  E-value=1.3e-10  Score=93.14  Aligned_cols=133  Identities=17%  Similarity=0.170  Sum_probs=85.6

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH  139 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (225)
                      .+++|+|||.|.++..|+.. ..+++++|+++.+++.|+++....  .  .+.+...+...+                  
T Consensus        45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~--~V~~~~~dvp~~------------------  101 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--P--HVEWIQADVPEF------------------  101 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---S--SEEEEES-TTT-------------------
T ss_pred             ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--C--CeEEEECcCCCC------------------
Confidence            68999999999999999887 467999999999999999987632  2  366666554332                  


Q ss_pred             cccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEeccCC---------CcHHHHHHHHHhhhhhhc
Q 041459          140 EIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISGILS---------EQLPHIINRYSEFLEDIL  204 (225)
Q Consensus       140 ~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~~~~~~  204 (225)
                           .+.++||+|++.-.++.      +..++..+...|+|||.+++.....         -..+.+.+.+.+.+..++
T Consensus       102 -----~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~  176 (201)
T PF05401_consen  102 -----WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE  176 (201)
T ss_dssp             -------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred             -----CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence                 16889999999765543      5567899999999999999854321         234456666666543333


Q ss_pred             cc------ccCCceEEEeeeec
Q 041459          205 LS------EMDDWTCVSGTKKR  220 (225)
Q Consensus       205 ~~------~~~~w~~~~~~k~~  220 (225)
                      ..      ...+|....|+++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~  198 (201)
T PF05401_consen  177 RVECRGGSPNEDCLLARFRNPV  198 (201)
T ss_dssp             EEEEE-SSTTSEEEEEEEE--S
T ss_pred             EEEEcCCCCCCceEeeeecCCc
Confidence            22      12346666666653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.1e-11  Score=107.16  Aligned_cols=152  Identities=22%  Similarity=0.206  Sum_probs=107.3

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +..+.+.|+..|.+.. .....+..+..+.+  .+++++||+.||.|++++.+|+. ..+|+|+|+++.+++.|++|++.
T Consensus       260 ~~~~~~~~~sF~Q~N~-~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~  337 (432)
T COG2265         260 GVSFQISPRSFFQVNP-AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAA  337 (432)
T ss_pred             ceEEEeCCCCceecCH-HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHH
Confidence            5666777774444433 33344444333332  35689999999999999999955 57799999999999999999999


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      |++.|  +.+...+...+..                   .......+|+|+.+||......-+-.....++|..++|+||
T Consensus       338 n~i~N--~~f~~~~ae~~~~-------------------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSC  396 (432)
T COG2265         338 NGIDN--VEFIAGDAEEFTP-------------------AWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSC  396 (432)
T ss_pred             cCCCc--EEEEeCCHHHHhh-------------------hccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeC
Confidence            99985  6666665544321                   00124578999999998766533333444668999999999


Q ss_pred             cCCCcHHHHHHHHHhhh
Q 041459          184 ILSEQLPHIINRYSEFL  200 (225)
Q Consensus       184 ~~~~~~~~~~~~~~~~~  200 (225)
                      ....-..++......++
T Consensus       397 NP~TlaRDl~~L~~~gy  413 (432)
T COG2265         397 NPATLARDLAILASTGY  413 (432)
T ss_pred             CHHHHHHHHHHHHhCCe
Confidence            98777777766555444

>PLN03075 nicotianamine synthase; Provisional

Probab=99.26  E-value=2e-10  Score=98.23  Aligned_cols=103  Identities=21%  Similarity=0.272  Sum_probs=77.7

Q ss_pred             CCCcEEEEcccccHH-HHHHH-h-cCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCcceEEEecCCCCCccccccccccc
Q 041459           58 GGELFLDYGTGSGIL-GIAAI-K-FGAAMSVGVDIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~-~~~l~-~-~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++|+|+|||.|.+ ++.++ . .+..+++++|+++.+++.|++.+.. .++. +++.+...+......          
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~----------  191 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTE----------  191 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECchhhccc----------
Confidence            678999999998844 44444 3 4667899999999999999999854 5654 457777665433210          


Q ss_pred             cccccccccCCCCCCceeEEEeccch----hHHHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL----NPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                  ....||+|++....    ....++++++.+.|+|||++++..
T Consensus       192 ------------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        192 ------------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ------------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence                        24679999998322    356789999999999999999853

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.26  E-value=1.5e-10  Score=94.63  Aligned_cols=102  Identities=21%  Similarity=0.315  Sum_probs=77.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..+..+++...  .+++++|+++.+++.++++..   .. ..+.+...+....+.            
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~------------  102 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP-LNIEFIQADAEALPF------------  102 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC-CCceEEecchhcCCC------------
Confidence            678999999999999998877544  589999999999999988764   11 234455444433211            


Q ss_pred             cccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ..+.||+|+++..++   .+..+++.+.+.|+|||.+++.+..
T Consensus       103 ----------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       103 ----------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             ----------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence                      356799999876554   3567899999999999999986553

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.25  E-value=1.4e-10  Score=95.10  Aligned_cols=119  Identities=17%  Similarity=0.253  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        45 ~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      +-.++.+|... .++++|||+|++.|+-+++++. .+ ..+++++|+++++.+.|++|+...++.. ++.+..+ ++.+ 
T Consensus        47 ~g~~L~~L~~~-~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~-~i~~~~~-gdal-  122 (219)
T COG4122          47 TGALLRLLARL-SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD-RIELLLG-GDAL-  122 (219)
T ss_pred             HHHHHHHHHHh-cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEEec-CcHH-
Confidence            33334444333 2689999999999999999886 34 6789999999999999999999999984 4555553 2222 


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                          +.+...             ..++||+||.+.-...+..+++.+.++|+|||++++-.+
T Consensus       123 ----~~l~~~-------------~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         123 ----DVLSRL-------------LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             ----HHHHhc-------------cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence                111111             468899999998888899999999999999999998433

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.24  E-value=1.3e-10  Score=93.63  Aligned_cols=119  Identities=21%  Similarity=0.278  Sum_probs=78.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|.++..+++.  +..+++++|+++.+           ...  .+.+...+.....     ....+ 
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~--~i~~~~~d~~~~~-----~~~~l-   90 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE--NVDFIRGDFTDEE-----VLNKI-   90 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC--CceEEEeeCCChh-----HHHHH-
Confidence            457899999999999999887764  45679999999854           111  1333333332210     00000 


Q ss_pred             cccccccccCCCCCCceeEEEeccc--------hhH------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANIL--------LNP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~--------~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                              ....+.++||+|+++..        .++      ...++..+.+.|+|||.+++..+..+...++...++..
T Consensus        91 --------~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~  162 (188)
T TIGR00438        91 --------RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL  162 (188)
T ss_pred             --------HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence                    00014567999999743        112      25688999999999999999777777777777776655


Q ss_pred             hh
Q 041459          200 LE  201 (225)
Q Consensus       200 ~~  201 (225)
                      ++
T Consensus       163 ~~  164 (188)
T TIGR00438       163 FE  164 (188)
T ss_pred             hc
Confidence            53

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.24  E-value=1.4e-10  Score=94.80  Aligned_cols=110  Identities=15%  Similarity=0.221  Sum_probs=86.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++|||+||++|+-++++++. + ..+++.+|+++...+.|++++...++. +++++..+++..       .+..+...
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~-------~l~~l~~~  116 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALE-------VLPELAND  116 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHH-------HHHHHHHT
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHh-------hHHHHHhc
Confidence            6789999999999999998863 3 578999999999999999999999986 677777765421       12222111


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      .         +.+.||+||.+..-..+..+++.+.++|+|||++++-..
T Consensus       117 ~---------~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  117 G---------EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             T---------TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             c---------CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence            0         245899999999888899999999999999999998543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.24  E-value=8.8e-11  Score=94.31  Aligned_cols=119  Identities=14%  Similarity=0.180  Sum_probs=91.8

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce-EEEecCCCCCcccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK-LHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      ..||++|||||..--+.--.+..+++++|.++.|-+.|.+.+..+.  ..++. +.+.+++.++                
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~ge~l~----------------  139 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADGENLP----------------  139 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeechhcCc----------------
Confidence            4689999999977655444466789999999999999999887663  23344 6677776653                


Q ss_pred             ccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhh
Q 041459          139 HEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLE  201 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  201 (225)
                          ++ ++.++|+|++...+   ....+.++++.++|+|||++++.+....+...+...++..++
T Consensus       140 ----~l-~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e  200 (252)
T KOG4300|consen  140 ----QL-ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE  200 (252)
T ss_pred             ----cc-ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence                11 57899999998765   457788999999999999999988887777777777666544

>PHA03411 putative methyltransferase; Provisional

Probab=99.23  E-value=1.1e-10  Score=98.69  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=77.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.+.+|||+|||+|.+++.+++. +..+++++|+++.+++.|+++..       .+.+...+...+              
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e~--------------  121 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFEF--------------  121 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhhh--------------
Confidence            34679999999999999887664 45789999999999999987632       234444443222              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----------------------HHHHHHHHHHhccCCeEEEEeccC-------
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGISGIL-------  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~~~~~-------  185 (225)
                               ....+||+|++|+|+.+                       +...+.....+|+|+|.+++. ..       
T Consensus       122 ---------~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y~~  191 (279)
T PHA03411        122 ---------ESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYYDG  191 (279)
T ss_pred             ---------cccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eeccccccc
Confidence                     03457999999999754                       134567778899999977652 21       


Q ss_pred             CCcHHHHHHHHHhh
Q 041459          186 SEQLPHIINRYSEF  199 (225)
Q Consensus       186 ~~~~~~~~~~~~~~  199 (225)
                      .-...+..+.+++.
T Consensus       192 sl~~~~y~~~l~~~  205 (279)
T PHA03411        192 TMKSNKYLKWSKQT  205 (279)
T ss_pred             cCCHHHHHHHHHhc
Confidence            12345566666654

>PLN02476 O-methyltransferase

Probab=99.23  E-value=2.2e-10  Score=97.35  Aligned_cols=108  Identities=14%  Similarity=0.256  Sum_probs=86.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++|||+|||+|+.++++++.  ...+++++|.+++..+.|++++...++. +++++..++...       .+..++.+
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e-------~L~~l~~~  189 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAE-------SLKSMIQN  189 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHH-------HHHHHHhc
Confidence            5789999999999999998863  3457999999999999999999999987 567777665422       11111100


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ...++||+||.+..-..+..+++.+.++|+|||++++-
T Consensus       190 ---------~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        190 ---------GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             ---------ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence                     02368999999999888999999999999999999984

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.23  E-value=2.1e-10  Score=93.76  Aligned_cols=97  Identities=16%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++..  .     +.+...+... +.           
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~-----~~~~~~d~~~-~~-----------  101 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--N-----INIIQGSLFD-PF-----------  101 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--C-----CcEEEeeccC-CC-----------
Confidence            346789999999999999988875 56789999999999999987642  1     2233333221 11           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 ++++||+|+++..+++     ....+.++.+.+  ++.+++.++
T Consensus       102 -----------~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587       102 -----------KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             -----------CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence                       5678999999887754     345677787776  456666554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK04457 spermidine synthase; Provisional

Probab=99.22  E-value=2.7e-10  Score=96.51  Aligned_cols=136  Identities=15%  Similarity=0.185  Sum_probs=92.2

Q ss_pred             chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCC
Q 041459           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  121 (225)
Q Consensus        43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  121 (225)
                      ++.+.++..+.. ..++.+|||+|||+|.++..+++ .+..+++++|+++.+++.|++++...+.. .++++...|+..+
T Consensus        52 ~y~~~m~~~l~~-~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~~  129 (262)
T PRK04457         52 AYTRAMMGFLLF-NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADGAEY  129 (262)
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCHHHH
Confidence            345555444422 23568999999999999998765 46778999999999999999887544322 3566666554221


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEeccCCC-cHHHHH
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILSE-QLPHII  193 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~  193 (225)
                                 +.        .  ...+||+|+++..-.       ...++++.+.+.|+|||++++..+..+ ......
T Consensus       130 -----------l~--------~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l  188 (262)
T PRK04457        130 -----------IA--------V--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYL  188 (262)
T ss_pred             -----------HH--------h--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHH
Confidence                       00        0  245799999864211       126889999999999999998644332 345555


Q ss_pred             HHHHhhhh
Q 041459          194 NRYSEFLE  201 (225)
Q Consensus       194 ~~~~~~~~  201 (225)
                      +.++..|.
T Consensus       189 ~~l~~~F~  196 (262)
T PRK04457        189 ERLESSFE  196 (262)
T ss_pred             HHHHHhcC
Confidence            66666564

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.22  E-value=2.3e-10  Score=90.54  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++...  .  .++.+...+...+..             
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~--~~v~ii~~D~~~~~~-------------   73 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--A--DNLTVIHGDALKFDL-------------   73 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--C--CCEEEEECchhcCCc-------------
Confidence            45789999999999999998887 46799999999999999988743  1  235566555443311             


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh--ccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY--AKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~--LkpgG~l~~~  182 (225)
                               +...||.|++|+|++....++..+.+.  +.++|++++.
T Consensus        74 ---------~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       74 ---------PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             ---------cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence                     334689999999998766666666644  4478888773

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.22  E-value=3.1e-10  Score=93.34  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=70.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCcceEEEecCCCCCc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-------------PKKMKLHLVPDRTFPA  123 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~  123 (225)
                      .++.+|||+|||.|..++++++.|.. |+|+|+|+.+++.+.+.   +++.             ...+.+...+...++.
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            36789999999999999999998765 99999999999986432   2221             1123444444332210


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccc-----hhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                           ...+.||.|+-...     ......+++.+.++|||||++++.++
T Consensus       109 ---------------------~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       109 ---------------------ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             ---------------------ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence                                 01345787765433     33456789999999999998666544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.21  E-value=8.9e-11  Score=103.51  Aligned_cols=156  Identities=12%  Similarity=0.043  Sum_probs=95.9

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhhcc-CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~-~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ..+.++|+..|+.... ....+...+.+... .+.+|||+|||+|.+++.+++.. .+++|+|+++.+++.|++|+..++
T Consensus       166 ~~~~~~~~~F~Q~N~~-~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~  243 (353)
T TIGR02143       166 FIYRQVENSFTQPNAA-VNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANN  243 (353)
T ss_pred             EEEEECCCCcccCCHH-HHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence            4566677665544333 33333333333332 24579999999999999888764 589999999999999999999998


Q ss_pred             CCCCcceEEEecCCCCCccccccccccccccccccccCCCC-CCceeEEEeccchhHH-HHHHHHHHHhccCCeEEEEec
Q 041459          106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE-TEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +.+  +.+...+...+       ...........-...... ...||+|+.+||.... ..+++.+.   +|++++|++|
T Consensus       244 ~~~--v~~~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~---~~~~ivYvsC  311 (353)
T TIGR02143       244 IDN--VQIIRMSAEEF-------TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ---AYERILYISC  311 (353)
T ss_pred             CCc--EEEEEcCHHHH-------HHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHH---cCCcEEEEEc
Confidence            753  55555443221       000000000000000000 1248999999996543 34445444   4799999999


Q ss_pred             cCCCcHHHHHHHH
Q 041459          184 ILSEQLPHIINRY  196 (225)
Q Consensus       184 ~~~~~~~~~~~~~  196 (225)
                      .......++....
T Consensus       312 ~p~tlaRDl~~L~  324 (353)
T TIGR02143       312 NPETLKANLEQLS  324 (353)
T ss_pred             CHHHHHHHHHHHh
Confidence            9877777776554

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.21  E-value=6.2e-11  Score=97.08  Aligned_cols=107  Identities=23%  Similarity=0.326  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA  123 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (225)
                      ..++++|.  +++|++|||+|||+|+.+..++.. + ...++++|+++...+.|++++...+..+  +.+...++...  
T Consensus        62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n--v~~~~gdg~~g--  135 (209)
T PF01135_consen   62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN--VEVVVGDGSEG--  135 (209)
T ss_dssp             HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS--EEEEES-GGGT--
T ss_pred             HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc--eeEEEcchhhc--
Confidence            33444443  678999999999999999998875 3 3469999999999999999999888753  66666654321  


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                                          +.....||.|+++......   -..+.+.||+||++++
T Consensus       136 --------------------~~~~apfD~I~v~~a~~~i---p~~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  136 --------------------WPEEAPFDRIIVTAAVPEI---PEALLEQLKPGGRLVA  170 (209)
T ss_dssp             --------------------TGGG-SEEEEEESSBBSS-----HHHHHTEEEEEEEEE
T ss_pred             --------------------cccCCCcCEEEEeeccchH---HHHHHHhcCCCcEEEE
Confidence                                1145689999997766432   2356678999999988

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.20  E-value=6.9e-11  Score=100.23  Aligned_cols=124  Identities=12%  Similarity=0.116  Sum_probs=70.9

Q ss_pred             CCCcEEEEcccccH----HHHHHHhc-C-----CCeEEEEeCCHHHHHHHHHHHHh----cCCCCCcceEEEecCCCCCc
Q 041459           58 GGELFLDYGTGSGI----LGIAAIKF-G-----AAMSVGVDIDPQAIKSAHQNAAL----NNIGPKKMKLHLVPDRTFPA  123 (225)
Q Consensus        58 ~~~~vlDiGcGtG~----~~~~l~~~-~-----~~~v~~vDi~~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~  123 (225)
                      ++.+|||+|||||.    +++.+++. +     ..+|+|+|+|+.|++.|++++..    .++......-.+..... ..
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~-~~  177 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED-KY  177 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC-eE
Confidence            35799999999994    55555553 2     35799999999999999986521    11110000000000000 00


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      .+.+.+...+.+...|......+.++||+|+|...+.+     ...++..+.+.|+|||.+++.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            01111111122211111111113678999999766543     346899999999999999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.20  E-value=2.1e-10  Score=99.73  Aligned_cols=144  Identities=19%  Similarity=0.245  Sum_probs=110.7

Q ss_pred             CCCCCCCcceeEEeccc-ceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHH
Q 041459           18 WSTPPDVQATNIILNPG-LAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS   96 (225)
Q Consensus        18 ~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~   96 (225)
                      -+|.+++.++.+.+|+. ..|+.+...- +   ..+.....+|.+|+|++||-|.+++.+|+.+..+|+++|++|.+++.
T Consensus       151 teTihrE~G~~f~vD~~Kv~Fsprl~~E-R---~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~  226 (341)
T COG2520         151 TETIHRENGCRFKVDVAKVYFSPRLSTE-R---ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY  226 (341)
T ss_pred             ceEEEecCCEEEEEchHHeEECCCchHH-H---HHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence            35679999999999999 5665554222 2   22334556799999999999999999999988889999999999999


Q ss_pred             HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC
Q 041459           97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG  176 (225)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg  176 (225)
                      .++|+..|++.+ .+...++|+.....                      ..+.+|-|+++.|.. -..++..+.+.+++|
T Consensus       227 L~eNi~LN~v~~-~v~~i~gD~rev~~----------------------~~~~aDrIim~~p~~-a~~fl~~A~~~~k~~  282 (341)
T COG2520         227 LKENIRLNKVEG-RVEPILGDAREVAP----------------------ELGVADRIIMGLPKS-AHEFLPLALELLKDG  282 (341)
T ss_pred             HHHHHHhcCccc-eeeEEeccHHHhhh----------------------ccccCCEEEeCCCCc-chhhHHHHHHHhhcC
Confidence            999999999883 46677777655421                      237799999987753 234566777888999


Q ss_pred             eEEEEeccCCCcH
Q 041459          177 AVVGISGILSEQL  189 (225)
Q Consensus       177 G~l~~~~~~~~~~  189 (225)
                      |++-+..+..++.
T Consensus       283 g~iHyy~~~~e~~  295 (341)
T COG2520         283 GIIHYYEFVPEDD  295 (341)
T ss_pred             cEEEEEeccchhh
Confidence            9998876665444

>PLN02366 spermidine synthase

Probab=99.20  E-value=1.6e-09  Score=93.63  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=97.7

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+++||++|||.|.++..+++.+ ..+++.+|+++.+++.|++.+...  ++...++++...|+..+           +
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-----------l  158 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-----------L  158 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-----------H
Confidence            357899999999999999988864 578999999999999999987542  23445677776665322           1


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEecc---C-CCcHHHHHHHHHhhhh-
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSEFLE-  201 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~---~-~~~~~~~~~~~~~~~~-  201 (225)
                      ..        . +.++||+|+++....       ...++++.+.+.|+|||+++...-   . .+....+.+.+++.|. 
T Consensus       159 ~~--------~-~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~  229 (308)
T PLN02366        159 KN--------A-PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKG  229 (308)
T ss_pred             hh--------c-cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCC
Confidence            00        0 256799999975431       134678999999999999987322   1 2334455556665552 


Q ss_pred             hhc-------ccccCCceEEEeeee
Q 041459          202 DIL-------LSEMDDWTCVSGTKK  219 (225)
Q Consensus       202 ~~~-------~~~~~~w~~~~~~k~  219 (225)
                      .+.       ....|.|.-..+.|+
T Consensus       230 ~v~~~~~~vPsy~~g~w~f~~as~~  254 (308)
T PLN02366        230 SVNYAWTTVPTYPSGVIGFVLCSKE  254 (308)
T ss_pred             ceeEEEecCCCcCCCceEEEEEECC
Confidence            221       233478987777765

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.20  E-value=9.3e-11  Score=103.73  Aligned_cols=152  Identities=12%  Similarity=0.059  Sum_probs=94.7

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhhcc-CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~-~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ..+.++|+..|.... .....+...+..... .+.++||++||+|.+++.+++. ..+++|+|+++.+++.|++|+..++
T Consensus       175 ~~~~~~~~sF~Q~N~-~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~  252 (362)
T PRK05031        175 FIYRQVENSFTQPNA-AVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG  252 (362)
T ss_pred             EEEEeCCCCeeccCH-HHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC
Confidence            456666766555543 333444444433332 2357999999999999987775 4689999999999999999999888


Q ss_pred             CCCCcceEEEecCCCCCccccccccccccccccccccCCC----CCCceeEEEeccchhHH-HHHHHHHHHhccCCeEEE
Q 041459          106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGIS----ETEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~DvIi~~~~~~~~-~~~l~~~~~~LkpgG~l~  180 (225)
                      +.  ++.+...+...+       +..+....   ......    ...+||+|+.+||.... ..+++.+.   ++++++|
T Consensus       253 ~~--~v~~~~~d~~~~-------l~~~~~~~---~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~---~~~~ivy  317 (362)
T PRK05031        253 ID--NVQIIRMSAEEF-------TQAMNGVR---EFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ---AYERILY  317 (362)
T ss_pred             CC--cEEEEECCHHHH-------HHHHhhcc---cccccccccccCCCCCEEEECCCCCCCcHHHHHHHH---ccCCEEE
Confidence            75  355555444221       10000000   000000    02258999999997543 34445444   3799999


Q ss_pred             EeccCCCcHHHHHHH
Q 041459          181 ISGILSEQLPHIINR  195 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~  195 (225)
                      ++|....-..++...
T Consensus       318 vSC~p~tlarDl~~L  332 (362)
T PRK05031        318 ISCNPETLCENLETL  332 (362)
T ss_pred             EEeCHHHHHHHHHHH
Confidence            999885555555543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.2e-10  Score=92.82  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=78.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++++|||||||+|+.+..+++... +|+++|+.++..+.|++|+...++.+  +.+.++|+..-              
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n--V~v~~gDG~~G--------------  132 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN--VTVRHGDGSKG--------------  132 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc--eEEEECCcccC--------------
Confidence            55899999999999999999999744 79999999999999999999999865  77888776432              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              +.....||.|++........   +.+.+.||+||++++-
T Consensus       133 --------~~~~aPyD~I~Vtaaa~~vP---~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         133 --------WPEEAPYDRIIVTAAAPEVP---EALLDQLKPGGRLVIP  168 (209)
T ss_pred             --------CCCCCCcCEEEEeeccCCCC---HHHHHhcccCCEEEEE
Confidence                    12567899999865443322   2455689999999873

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.20  E-value=9.7e-11  Score=94.70  Aligned_cols=96  Identities=22%  Similarity=0.279  Sum_probs=77.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ....+|.|+|||+|..+..+++ .+.+.++|+|.|+.|++.|+.....       ..+...+.                 
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-------~~f~~aDl-----------------   84 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-------ATFEEADL-----------------   84 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-------CceecccH-----------------
Confidence            3568999999999999998876 5889999999999999999766432       22333333                 


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (225)
                            +.+.+....|++++|..+++   ..+++..+...|.|||++.+.
T Consensus        85 ------~~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          85 ------RTWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             ------hhcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence                  23347788999999999876   457899999999999999985

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.19  E-value=1.4e-10  Score=91.42  Aligned_cols=137  Identities=22%  Similarity=0.322  Sum_probs=92.8

Q ss_pred             ceecCCCCchHHHHHHHHHhhcc-----CC-CcEEEEcccccHHHHHHHhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459           35 LAFGTGEHATTKLCLLLLQSLIK-----GG-ELFLDYGTGSGILGIAAIKFGAA-MSVGVDIDPQAIKSAHQNAALNNIG  107 (225)
Q Consensus        35 ~~f~~~~~~~~~~~~~~L~~~~~-----~~-~~vlDiGcGtG~~~~~l~~~~~~-~v~~vDi~~~~l~~a~~~~~~~~~~  107 (225)
                      ..|+   ......+..+|.....     +. .+|||+|||+|.+...|++.+.. ..+|+|.|+.+++.|+..+...+++
T Consensus        41 vWFg---~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~  117 (227)
T KOG1271|consen   41 VWFG---EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS  117 (227)
T ss_pred             eecC---CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC
Confidence            5665   3345566677755422     33 39999999999999999987654 3999999999999999988888887


Q ss_pred             CCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----------HHHHHHHHHHHhccCC
Q 041459          108 PKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----------PLLQLADHIVSYAKPG  176 (225)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----------~~~~~l~~~~~~Lkpg  176 (225)
                      + .+++...+.....+                      ...+||+|.--..++           -+.-++..+.+.|+||
T Consensus       118 n-~I~f~q~DI~~~~~----------------------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~  174 (227)
T KOG1271|consen  118 N-EIRFQQLDITDPDF----------------------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG  174 (227)
T ss_pred             c-ceeEEEeeccCCcc----------------------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence            4 57776665433211                      244555554422221           1244678888999999


Q ss_pred             eEEEE-eccCCCcHHHHHHHHHhh
Q 041459          177 AVVGI-SGILSEQLPHIINRYSEF  199 (225)
Q Consensus       177 G~l~~-~~~~~~~~~~~~~~~~~~  199 (225)
                      |++++ +|..+  ..++.+.+...
T Consensus       175 gifvItSCN~T--~dELv~~f~~~  196 (227)
T KOG1271|consen  175 GIFVITSCNFT--KDELVEEFENF  196 (227)
T ss_pred             cEEEEEecCcc--HHHHHHHHhcC
Confidence            99887 45544  45555555544

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.19  E-value=2.9e-10  Score=98.26  Aligned_cols=102  Identities=22%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.+++.+++ .+..+++++|. +.+++.+++++...++. +++++...+....              
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~--------------  211 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKE--------------  211 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCC--------------
Confidence            4568999999999999998776 46678999997 78999999999888775 3455555443221              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                +...+|+|++...++.     ...+++++++.|+|||.+++.++
T Consensus       212 ----------~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       212 ----------SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             ----------CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                      1224698877655442     34689999999999999998765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06202 hypothetical protein; Provisional

Probab=99.18  E-value=1.5e-10  Score=96.06  Aligned_cols=100  Identities=26%  Similarity=0.386  Sum_probs=71.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhc----C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF----G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~----~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++.+|||+|||+|.++..+++.    + ..+++|+|+++.|++.|+++....+     +.+...+.+.++.         
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~~l~~---------  125 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG-----VTFRQAVSDELVA---------  125 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC-----CeEEEEecccccc---------
Confidence            5679999999999998887642    2 3589999999999999988754333     2344443333311         


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccCC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                   .+++||+|+++..+++.     ..++.++.+.++  |.+++.++..
T Consensus       126 -------------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        126 -------------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             -------------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence                         35689999999887653     457888998887  5555555544

>TIGR03438 probable methyltransferase

Probab=99.18  E-value=5.9e-10  Score=96.26  Aligned_cols=119  Identities=13%  Similarity=0.021  Sum_probs=75.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.++.+|||+|||||..+..+++..  ..+|+++|+|+.|++.|++++.... ....+....++.....    ...... 
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~----~~~~~~-  134 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPL----ALPPEP-  134 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchh----hhhccc-
Confidence            4467899999999999999887653  4679999999999999998876432 2122333444432210    000000 


Q ss_pred             cccccccccCCCCCCceeEEEeccc-----hhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459          134 EDLSSHEIRGISETEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHI  192 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (225)
                                  ......++++...     ......+++.+.+.|+|||.+++......+...+
T Consensus       135 ------------~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~  186 (301)
T TIGR03438       135 ------------AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVL  186 (301)
T ss_pred             ------------ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence                        0112334443322     2335678999999999999999865544444433

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=8.7e-10  Score=86.91  Aligned_cols=115  Identities=20%  Similarity=0.311  Sum_probs=87.8

Q ss_pred             CCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ...++|+|||+|..+-.+++.  +...+.+.|++|.+++..++.+..|+...+   ....+          ...+     
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~---~V~td----------l~~~-----  105 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHID---VVRTD----------LLSG-----  105 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccc---eeehh----------HHhh-----
Confidence            678999999999999988764  567789999999999999998887775422   22211          1111     


Q ss_pred             ccccccCCCCCCceeEEEeccchhH------------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHI  192 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (225)
                             + ..++.|+++.|+||-+                        ...++..+-..|.|.|.+|+.....+...++
T Consensus       106 -------l-~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei  177 (209)
T KOG3191|consen  106 -------L-RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI  177 (209)
T ss_pred             -------h-ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH
Confidence                   1 3488999999999622                        2456777888999999999988888888888


Q ss_pred             HHHHHhh
Q 041459          193 INRYSEF  199 (225)
Q Consensus       193 ~~~~~~~  199 (225)
                      .+.+++.
T Consensus       178 ~k~l~~~  184 (209)
T KOG3191|consen  178 LKILEKK  184 (209)
T ss_pred             HHHHhhc
Confidence            8876654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.17  E-value=9.8e-10  Score=90.37  Aligned_cols=104  Identities=23%  Similarity=0.315  Sum_probs=77.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..  .+.+...+....+.              
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~--------------  107 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL--KIEYRCTSVEDLAE--------------  107 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhc--------------
Confidence            478999999999999998887654 5999999999999999988766642  23444333222210              


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                             ...++||+|+++..+++   ...++..+.+.|++||.++++...
T Consensus       108 -------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       108 -------KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             -------CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence                   02368999999776654   567889999999999999987543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.17  E-value=6.7e-10  Score=88.92  Aligned_cols=104  Identities=24%  Similarity=0.327  Sum_probs=71.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCC---------eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAA---------MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM  125 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~---------~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (225)
                      .+++..|+|..||+|++.+.++.. ...         .++|.|+++.+++.|+.|+...++. ..+.+...+...++.  
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~--  102 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPL--  102 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGG--
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhccc--
Confidence            457889999999999999987653 222         3899999999999999999988876 445555544433310  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEe
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                          ..+.+|+|++|+|+..           +..+++.+.+.+++..+++++
T Consensus       103 --------------------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  103 --------------------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             --------------------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             --------------------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence                                4678999999999742           456788999999995555443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.17  E-value=3.1e-10  Score=103.76  Aligned_cols=101  Identities=21%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++..   +.. ..+.+...+......       .+     
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~-~~i~~~~~d~~~~~~-------~~-----   99 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHY-KNVKFMCADVTSPDL-------NI-----   99 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccC-CceEEEEeccccccc-------CC-----
Confidence            56799999999999999988874 57999999999998876432   211 234555544421100       00     


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                              +.++||+|+++.++++     ...++..+.+.|||||++++.+
T Consensus       100 --------~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        100 --------SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             --------CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence                    4578999999988765     4578999999999999999864

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.17  E-value=3.2e-10  Score=98.13  Aligned_cols=104  Identities=24%  Similarity=0.304  Sum_probs=83.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  134 (225)
                      +++|..|||-.||||++.+.+...|.. ++|+|++..|++-|+.|+...++..  ..+... ++..++.           
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~--~~~~~~~Da~~lpl-----------  260 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIED--YPVLKVLDATNLPL-----------  260 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCc--eeEEEecccccCCC-----------
Confidence            668999999999999999999888765 8999999999999999999887652  333333 5555432           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 +..++|.|+++||+.-            +.++++.+.+.||+||++++...
T Consensus       261 -----------~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         261 -----------RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             -----------CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence                       3447999999999732            56789999999999999988644

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.16  E-value=7.5e-10  Score=91.36  Aligned_cols=100  Identities=12%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCcceEEEecCCCCCc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-------------PKKMKLHLVPDRTFPA  123 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~  123 (225)
                      .++.+|||+|||.|..++++++.|.. |+|+|+|+.+++.+..   .+++.             ...+.+...+...+..
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence            35789999999999999999998765 9999999999998743   22222             1233344433322210


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEec-----cchhHHHHHHHHHHHhccCCeEEEE
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-----~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                                           .....||.|+-.     .+......++..+.++|||||++++
T Consensus       112 ---------------------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        112 ---------------------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ---------------------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence                                 023478888853     3334457889999999999987444

>TIGR00417 speE spermidine synthase

Probab=99.16  E-value=1.7e-09  Score=92.03  Aligned_cols=140  Identities=16%  Similarity=0.174  Sum_probs=92.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+++||++|||+|.++..+++.+ ..+++++|+++.+++.|++.+....  +...++.+...++..+           +.
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-----------l~  140 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-----------LA  140 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-----------HH
Confidence            45799999999999998877754 6789999999999999998875432  2223444444333111           00


Q ss_pred             ccccccccCCCCCCceeEEEeccch--hH-----HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILL--NP-----LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLEDI  203 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~--~~-----~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~~  203 (225)
                              .  ..++||+|+++.+.  ..     ..++++.+.+.|+|||++++.....    .....+.+.++..|..+
T Consensus       141 --------~--~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v  210 (270)
T TIGR00417       141 --------D--TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPIT  210 (270)
T ss_pred             --------h--CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCe
Confidence                    0  24689999997652  11     3567889999999999999852211    12233344455545444


Q ss_pred             cc-------cccCCceEEEeee
Q 041459          204 LL-------SEMDDWTCVSGTK  218 (225)
Q Consensus       204 ~~-------~~~~~w~~~~~~k  218 (225)
                      ..       ...+.|.-+.+.|
T Consensus       211 ~~~~~~vp~~~~g~~~~~~as~  232 (270)
T TIGR00417       211 EYYTANIPTYPSGLWTFTIGSK  232 (270)
T ss_pred             EEEEEEcCccccchhEEEEEEC
Confidence            32       2347798888877

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.16  E-value=6.1e-10  Score=99.05  Aligned_cols=126  Identities=23%  Similarity=0.302  Sum_probs=89.0

Q ss_pred             eEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           28 NIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        28 ~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      .+..+|.+.+   .+.....+.+.+... .++.+|||++||+|.+++.++. .+..+|+++|+++.+++.+++|+..|++
T Consensus        31 ~vFyqp~~~~---nrdl~~~v~~~~~~~-~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~  106 (382)
T PRK04338         31 PVFYNPRMEL---NRDISVLVLRAFGPK-LPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL  106 (382)
T ss_pred             CeeeCccccc---hhhHHHHHHHHHHhh-cCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            4566777665   233334443433211 1246899999999999998765 5667899999999999999999999987


Q ss_pred             CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      .+  +.+...+...+           +        .   ....||+|+++|+ .....++..+.+.+++||+++++
T Consensus       107 ~~--~~v~~~Da~~~-----------l--------~---~~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        107 EN--EKVFNKDANAL-----------L--------H---EERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             Cc--eEEEhhhHHHH-----------H--------h---hcCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            63  33444333211           0        0   1356999999986 44567788878889999999997

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.15  E-value=7.5e-10  Score=92.69  Aligned_cols=127  Identities=20%  Similarity=0.213  Sum_probs=92.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.+|.+|+|.|+|+|.++..+++  .+..+++..|+.+...+.|++|+..+++. +.+.+...|...-         ++ 
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~---------g~-  106 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEE---------GF-  106 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG------------
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceecc---------cc-
Confidence            66899999999999999999887  36789999999999999999999999986 4577776654211         00 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhc-cCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISGILSEQLPHIINRYSEF-LEDIL  204 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (225)
                              . -.....+|.||.+.|-.  -..+..+.+.| |+||++++-...-++.......+++. |..++
T Consensus       107 --------~-~~~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~  168 (247)
T PF08704_consen  107 --------D-EELESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIE  168 (247)
T ss_dssp             --------S-TT-TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEE
T ss_pred             --------c-ccccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeE
Confidence                    0 00236799999887655  34577888999 89999998777777777777777774 54443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.15  E-value=6.3e-10  Score=92.24  Aligned_cols=104  Identities=24%  Similarity=0.344  Sum_probs=77.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++....+..   +.+...+....+.             
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~-------------  109 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLK---IDYRQTTAEELAA-------------  109 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCc---eEEEecCHHHhhh-------------
Confidence            367899999999999998888765 46999999999999999887765542   3333322221100             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                              ...+.||+|+++..+++   ...+++.+.++|+|||.++++...
T Consensus       110 --------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        110 --------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             --------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence                    03468999999766543   567889999999999999987553

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.14  E-value=5e-10  Score=90.86  Aligned_cols=118  Identities=17%  Similarity=0.225  Sum_probs=84.5

Q ss_pred             CcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      ..+||+|||.|.+.+.+|+ .+...++|+|+....+..|.+.+...++.|  +.+...++..+       +         
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N--v~~~~~da~~~-------l---------   80 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN--VRFLRGDAREL-------L---------   80 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS--EEEEES-CTTH-------H---------
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc--eEEEEccHHHH-------H---------
Confidence            3899999999999998775 688899999999999999999998888875  66665555432       1         


Q ss_pred             ccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          139 HEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                         +.+.+++++|-|+.++|-.++           ..+++.+.+.|+|||.+.+.+...+......+.+.+
T Consensus        81 ---~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   81 ---RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             ---HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             ---hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence               112256889999999886442           468999999999999999966555455555555554

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.14  E-value=9.6e-10  Score=95.61  Aligned_cols=100  Identities=17%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|.++..+++..  ...++++|+++.+++.|++++..++..+  +.+...+.....           
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n--V~~i~gD~~~~~-----------  144 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN--VIFVCGDGYYGV-----------  144 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--EEEEeCChhhcc-----------
Confidence            4578899999999999999988753  2469999999999999999998887653  555544432210           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                 .....||+|+++......   ...+.+.|+|||.+++.
T Consensus       145 -----------~~~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        145 -----------PEFAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             -----------cccCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence                       023569999997654433   34567889999998874

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.14  E-value=1e-09  Score=95.26  Aligned_cols=110  Identities=23%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCcceEEEecCC
Q 041459           44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG---PKKMKLHLVPDR  119 (225)
Q Consensus        44 ~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~  119 (225)
                      +.+.++.++... ..++.+|||+|||+|.+++.+++.+ .+++|+|+|+.|++.|+++.......   ...+.+...+..
T Consensus       129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            334444444332 1247899999999999999999875 46999999999999999987654211   112333333321


Q ss_pred             CCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEE
Q 041459          120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~  180 (225)
                      .                         ..++||+|+|...+.++     ..++..+.+ +.++|.++
T Consensus       208 ~-------------------------l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        208 S-------------------------LSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             h-------------------------cCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            1                         24679999987665432     234555553 45665544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.14  E-value=2.2e-10  Score=98.70  Aligned_cols=101  Identities=19%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++++|||+|||||.+++.+++.|+.+++|+|-+. +.+.|++.+..|++. +.+++..+..+..         .+    
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~-~ii~vi~gkvEdi---------~L----  123 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLE-DVITVIKGKVEDI---------EL----  123 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCcc-ceEEEeecceEEE---------ec----
Confidence            36899999999999999999999999999999877 559999999999987 4455554443322         11    


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----H-HHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----L-LQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~-~~~l~~~~~~LkpgG~l~~  181 (225)
                               |.+++|+|++.++-+.     + ..++-.=-++|+|||.++-
T Consensus       124 ---------P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  124 ---------PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             ---------CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence                     5689999999877543     2 2233334488999999984

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.13  E-value=1e-09  Score=90.51  Aligned_cols=97  Identities=23%  Similarity=0.326  Sum_probs=69.7

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+. .++|+|+++.+++.|+++....+.. ..+.+...+...                
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~----------------  123 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLES----------------  123 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCchh----------------
Confidence            3578999999999999999888764 4999999999999999988766653 234555443211                


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~  180 (225)
                               ..+.||+|++...+++     ...++..+.+.+++++++.
T Consensus       124 ---------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        124 ---------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             ---------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence                     3467999999766533     3456777777665544443

>PTZ00146 fibrillarin; Provisional

Probab=99.13  E-value=3e-09  Score=90.80  Aligned_cols=145  Identities=17%  Similarity=0.146  Sum_probs=86.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|.++.+++.. + ..+|+++|+++.+++.....+...  .  ++.....+....     ... .. 
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~--NI~~I~~Da~~p-----~~y-~~-  198 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--P--NIVPIIEDARYP-----QKY-RM-  198 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--C--CCEEEECCccCh-----hhh-hc-
Confidence            568899999999999999999875 2 468999999998664444333211  1  233444433211     000 00 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEeccC-----CCcHHHH----HHHHHhh-hhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGISGIL-----SEQLPHI----INRYSEF-LED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~----~~~~~~~-~~~  202 (225)
                                  ....+|+|+++....+ ...++.++.+.|||||.+++....     .....++    .+.+++. |+.
T Consensus       199 ------------~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~  266 (293)
T PTZ00146        199 ------------LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP  266 (293)
T ss_pred             ------------ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence                        2347999999875433 345567889999999999984111     1122222    2445544 554


Q ss_pred             hcccccC----CceEEEeeeecccc
Q 041459          203 ILLSEMD----DWTCVSGTKKRAKE  223 (225)
Q Consensus       203 ~~~~~~~----~w~~~~~~k~~~~~  223 (225)
                      ++.....    +...+++++++.+.
T Consensus       267 ~e~v~L~Py~~~h~~v~~~~~~~~~  291 (293)
T PTZ00146        267 KEQLTLEPFERDHAVVIGVYRPVKK  291 (293)
T ss_pred             EEEEecCCccCCcEEEEEEEcCCcc
Confidence            4433322    33567777776543

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.12  E-value=1.2e-09  Score=76.97  Aligned_cols=99  Identities=28%  Similarity=0.409  Sum_probs=72.5

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE  140 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (225)
                      +++|+|||+|.++..+++.+..+++++|+++.++..+++.......  ..+.+...+......                 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------------   61 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPP-----------------   61 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhcc-----------------
Confidence            5899999999999988876678899999999999999854332222  234444433322200                 


Q ss_pred             ccCCCCCCceeEEEeccchhH----HHHHHHHHHHhccCCeEEEEe
Q 041459          141 IRGISETEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       141 ~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                          ....++|+|+++.+++.    ...+++.+.+.+++||.++++
T Consensus        62 ----~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          62 ----EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ----ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence                03567999999988754    567789999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.11  E-value=3.5e-10  Score=99.67  Aligned_cols=157  Identities=22%  Similarity=0.236  Sum_probs=87.7

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      +..+.++|+..|.........++..++......+..+||+.||.|++++.++.. ..+|+|+|+++.+++.|++|+..|+
T Consensus       164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~  242 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNG  242 (352)
T ss_dssp             TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence            467778888766654443333333333332222347999999999999999887 4579999999999999999999999


Q ss_pred             CCCCcceEEEecCCCCCccccccccccccccccccccCC-CCCCceeEEEeccchhHHHH-HHHHHHHhccCCeEEEEec
Q 041459          106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGI-SETEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DvIi~~~~~~~~~~-~l~~~~~~LkpgG~l~~~~  183 (225)
                      +.+  +.+...+...+...+... ..+   .   .+... .....+|+|+.+||...... +++.+.   ++.-++|+||
T Consensus       243 i~n--~~f~~~~~~~~~~~~~~~-r~~---~---~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYvSC  310 (352)
T PF05958_consen  243 IDN--VEFIRGDAEDFAKALAKA-REF---N---RLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KLKRIVYVSC  310 (352)
T ss_dssp             --S--EEEEE--SHHCCCHHCCS--GG---T---TGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HSSEEEEEES
T ss_pred             CCc--ceEEEeeccchhHHHHhh-HHH---H---hhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cCCeEEEEEC
Confidence            875  555544433221110000 000   0   00000 02346899999999765433 333332   3467899999


Q ss_pred             cCCCcHHHHHHH
Q 041459          184 ILSEQLPHIINR  195 (225)
Q Consensus       184 ~~~~~~~~~~~~  195 (225)
                      ....-..++...
T Consensus       311 nP~tlaRDl~~L  322 (352)
T PF05958_consen  311 NPATLARDLKIL  322 (352)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            987666776554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.10  E-value=1.7e-09  Score=86.15  Aligned_cols=148  Identities=22%  Similarity=0.241  Sum_probs=82.8

Q ss_pred             ecccceecCCCCchHHHHHHHHHhh--------ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH
Q 041459           31 LNPGLAFGTGEHATTKLCLLLLQSL--------IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        31 ~~~~~~f~~~~~~~~~~~~~~L~~~--------~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      .+.+..++...++....+..+|...        ..++.+|||+|||+|..++.++.. +..+|+..|.++ .++..+.|+
T Consensus        10 e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni   88 (173)
T PF10294_consen   10 EDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNI   88 (173)
T ss_dssp             -------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHH
T ss_pred             cccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHH
Confidence            3344455666778887777777652        346889999999999999999887 788899999999 999999999


Q ss_pred             HhcCC-CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCe
Q 041459          102 ALNNI-GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGA  177 (225)
Q Consensus       102 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG  177 (225)
                      ..|+. ....+.+...+  .-.    ......            ....+||+|+..-.+   ..+..++..+.++|+++|
T Consensus        89 ~~N~~~~~~~v~v~~L~--Wg~----~~~~~~------------~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~  150 (173)
T PF10294_consen   89 ELNGSLLDGRVSVRPLD--WGD----ELDSDL------------LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG  150 (173)
T ss_dssp             HTT--------EEEE----TTS-----HHHHH------------HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred             HhccccccccccCcEEE--ecC----cccccc------------cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence            98762 11334443322  110    000011            035689999986443   336778889999999998


Q ss_pred             EEEEeccCC-CcHHHHHHHHH
Q 041459          178 VVGISGILS-EQLPHIINRYS  197 (225)
Q Consensus       178 ~l~~~~~~~-~~~~~~~~~~~  197 (225)
                      .++++...+ .....+.+.++
T Consensus       151 ~vl~~~~~R~~~~~~F~~~~~  171 (173)
T PF10294_consen  151 KVLLAYKRRRKSEQEFFDRLK  171 (173)
T ss_dssp             TEEEEEE-S-TGGCHHHHHH-
T ss_pred             EEEEEeCEecHHHHHHHHHhh
Confidence            877764433 33444544443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK01581 speE spermidine synthase; Validated

Probab=99.09  E-value=1.2e-09  Score=95.64  Aligned_cols=142  Identities=16%  Similarity=0.147  Sum_probs=91.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHH-----hcCCCCCcceEEEecCCCCCcccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAA-----LNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      ..+++||++|||+|..+..+++. +..+++++|+++.+++.|+....     ...+...++++...|+..+         
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f---------  219 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF---------  219 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---------
Confidence            35689999999999988887775 46789999999999999996211     1123334666766655332         


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchh-------H-HHHHHHHHHHhccCCeEEEEeccCCCcH----HHHHHHHHh
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLN-------P-LLQLADHIVSYAKPGAVVGISGILSEQL----PHIINRYSE  198 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~  198 (225)
                        +..          ..++||+|+++.+..       . -.+++..+.+.|+|||+++.........    ..+.+.+++
T Consensus       220 --L~~----------~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~  287 (374)
T PRK01581        220 --LSS----------PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH  287 (374)
T ss_pred             --HHh----------cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH
Confidence              110          346799999986432       1 2567899999999999988753322222    223444444


Q ss_pred             hhhhhcc------cccCCceEEEeeee
Q 041459          199 FLEDILL------SEMDDWTCVSGTKK  219 (225)
Q Consensus       199 ~~~~~~~------~~~~~w~~~~~~k~  219 (225)
                      .+.....      ...+.|.-..+.+.
T Consensus       288 af~~v~~y~t~vPsyg~~WgF~~as~~  314 (374)
T PRK01581        288 AGLTVKSYHTIVPSFGTDWGFHIAANS  314 (374)
T ss_pred             hCCceEEEEEecCCCCCceEEEEEeCC
Confidence            3221111      12334887777664

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.09  E-value=5e-10  Score=99.17  Aligned_cols=129  Identities=16%  Similarity=0.251  Sum_probs=95.5

Q ss_pred             eEEecccceecCCCCchHHHHHHHHHhhccC--CCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           28 NIILNPGLAFGTGEHATTKLCLLLLQSLIKG--GELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        28 ~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~--~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .+.++|.|.|   .+....++...+.....+  +.+|||+.||+|..++.+++.  +..+|+++|+++.+++.+++|+..
T Consensus        15 ~vFYNP~~~~---nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~   91 (374)
T TIGR00308        15 TVFYNPRMQF---NRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY   91 (374)
T ss_pred             CcccCchhhc---cccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            5678899888   455666655554333221  358999999999999987765  678999999999999999999998


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      |++.+  +.+...+...+           +.        .  ...+||+|+.+| +.....+++.+.+.+++||.+++++
T Consensus        92 N~~~~--~~v~~~Da~~~-----------l~--------~--~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308        92 NSVEN--IEVPNEDAANV-----------LR--------Y--RNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             hCCCc--EEEEchhHHHH-----------HH--------H--hCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEEe
Confidence            87652  34444332211           10        0  235799999998 6666788999999999999999973

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.07  E-value=1.3e-09  Score=95.14  Aligned_cols=112  Identities=22%  Similarity=0.222  Sum_probs=73.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCC----cceEEEecCCCCCccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN--IGPK----KMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      ++.+|||+|||-|.-..-....+...++|+|++..+++.|+++.....  ....    .....+..++.+...    +..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~----l~~  137 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES----LRE  137 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH----HHC
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch----hhh
Confidence            678999999999987777677788999999999999999999883211  0000    122333333333211    111


Q ss_pred             cccccccccccCCCC-CCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEecc
Q 041459          132 IVEDLSSHEIRGISE-TEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 .+.+ ...||+|-|.+.+|.       .+.++.++...|+|||+++.+++
T Consensus       138 -----------~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  138 -----------KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             -----------TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -----------hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence                       1112 358999999888765       45689999999999999999765

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.06  E-value=1.3e-09  Score=89.65  Aligned_cols=130  Identities=21%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             HHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce--------EEEecCC--
Q 041459           51 LLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK--------LHLVPDR--  119 (225)
Q Consensus        51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~--------~~~~~~~--  119 (225)
                      .|..-...++.+|||||.+|.+++.+++ .+...++|+||++..|..|++++..-.-....+.        ...++..  
T Consensus        51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~  130 (288)
T KOG2899|consen   51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQR  130 (288)
T ss_pred             hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccc
Confidence            3333333578999999999999999887 5888899999999999999998752110000000        0000000  


Q ss_pred             CCCcccc-cccccccccccc------ccccCCCCCCceeEEEe---------ccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          120 TFPASMN-ERVDGIVEDLSS------HEIRGISETEKYDVVIA---------NILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       120 ~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~DvIi~---------~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                      ......- .+...-+.|.+.      +++. ......||+|+|         |+.-+.+..++..++++|.|||++++
T Consensus       131 ~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  131 NEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             ccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence            0000000 000000011111      1111 114568999998         33345688999999999999999998

>PRK03612 spermidine synthase; Provisional

Probab=99.06  E-value=3.4e-09  Score=97.97  Aligned_cols=142  Identities=15%  Similarity=0.224  Sum_probs=91.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhc-----CCCCCcceEEEecCCCCCcccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALN-----NIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      +++++|||+|||+|..+..+++.+. .+++++|+++++++.|+++....     .+++.++++...|+..+         
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~---------  366 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW---------  366 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH---------
Confidence            3578999999999999998888754 79999999999999999853211     22333556665554321         


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHh
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSE  198 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~  198 (225)
                        +.        .  ..++||+|+++++...        ..++++.+.+.|||||.+++....    .+...++.+.+++
T Consensus       367 --l~--------~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~  434 (521)
T PRK03612        367 --LR--------K--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA  434 (521)
T ss_pred             --HH--------h--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence              11        0  2468999999876421        245788999999999999985321    2223344555554


Q ss_pred             h-hh----hhcccccCCceEEEeeee
Q 041459          199 F-LE----DILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       199 ~-~~----~~~~~~~~~w~~~~~~k~  219 (225)
                      . |.    .....+-++|.-..+.|+
T Consensus       435 ~gf~v~~~~~~vps~g~w~f~~as~~  460 (521)
T PRK03612        435 AGLATTPYHVNVPSFGEWGFVLAGAG  460 (521)
T ss_pred             cCCEEEEEEeCCCCcchhHHHeeeCC
Confidence            4 31    111122367765555443

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.04  E-value=2.6e-09  Score=89.56  Aligned_cols=109  Identities=14%  Similarity=0.224  Sum_probs=85.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++|||+|+++|+-++++++.  ...+++++|.++...+.|++++...++. +++.+..+++..       .+..+...
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e-------~L~~l~~~  150 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALP-------VLDQMIED  150 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHH-------HHHHHHhc
Confidence            5789999999999999998863  3568999999999999999999999987 577777665421       11111100


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              -...++||+||++.-...+..+++.+.++|+|||++++-
T Consensus       151 --------~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        151 --------GKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             --------cccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence                    001368999999888888889999999999999999884

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.03  E-value=2.7e-09  Score=86.59  Aligned_cols=119  Identities=25%  Similarity=0.314  Sum_probs=79.3

Q ss_pred             chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      +++...+++|......+.-|||||||||..+..+...| ...+|+|||+.||+.|...- ..+   +.+....+.+-.+ 
T Consensus        35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e-~eg---dlil~DMG~Glpf-  108 (270)
T KOG1541|consen   35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERE-LEG---DLILCDMGEGLPF-  108 (270)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhh-hhc---CeeeeecCCCCCC-
Confidence            34444445443322235689999999999999888887 66899999999999998632 222   3333444433333 


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccch----------hH----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL----------NP----LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~----------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                             .++.||-+|+-..+          +.    +..++..++.+|++|+..++. +-.++
T Consensus       109 -----------------------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q-fYpen  164 (270)
T KOG1541|consen  109 -----------------------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ-FYPEN  164 (270)
T ss_pred             -----------------------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE-ecccc
Confidence                                   68899988873222          22    345688899999999999885 33333


Q ss_pred             HHH
Q 041459          189 LPH  191 (225)
Q Consensus       189 ~~~  191 (225)
                      ..+
T Consensus       165 ~~q  167 (270)
T KOG1541|consen  165 EAQ  167 (270)
T ss_pred             hHH
Confidence            333

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.03  E-value=3e-09  Score=85.11  Aligned_cols=100  Identities=18%  Similarity=0.263  Sum_probs=70.1

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      +.+.+.+++|.+|||+|||.|.+..++.+......+|+|++++.+..|.+    +|++     +...+.+.       .+
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rGv~-----Viq~Dld~-------gL   68 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RGVS-----VIQGDLDE-------GL   68 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cCCC-----EEECCHHH-------hH
Confidence            34556677999999999999999999888666678999999999887764    4543     44444321       11


Q ss_pred             cccccccccccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEE
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~  181 (225)
                      ..+             ++++||.||++-.+....   .+++++.|   -|...++
T Consensus        69 ~~f-------------~d~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IV  107 (193)
T PF07021_consen   69 ADF-------------PDQSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIV  107 (193)
T ss_pred             hhC-------------CCCCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEE
Confidence            111             789999999988876644   45555554   4544444

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.02  E-value=2.2e-09  Score=86.78  Aligned_cols=92  Identities=18%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             hhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCcccccccccc
Q 041459           54 SLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGI  132 (225)
Q Consensus        54 ~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  132 (225)
                      ..++++.+|||+|||+|.++..+++.....++|+|+++.+++.|+++    +     +.+...+... ++        . 
T Consensus         9 ~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-----~~~~~~d~~~~l~--------~-   70 (194)
T TIGR02081         9 NLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-----VNVIQGDLDEGLE--------A-   70 (194)
T ss_pred             HhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-----CeEEEEEhhhccc--------c-
Confidence            33456789999999999999888765555689999999999888642    2     2233333221 10        0 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHH---HHHHHHHHHhccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPL---LQLADHIVSYAKP  175 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~---~~~l~~~~~~Lkp  175 (225)
                                  ..+++||+|+++.++++.   ..+++++.+.+++
T Consensus        71 ------------~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        71 ------------FPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             ------------cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence                        045689999999887764   4456666655443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.01  E-value=1.8e-09  Score=93.63  Aligned_cols=85  Identities=27%  Similarity=0.368  Sum_probs=60.6

Q ss_pred             CCCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEe-cCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLV-PDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  134 (225)
                      ++.++||||||+|.+...++ +.+..+++|+|+++.+++.|++|+..+ ++. +.+.+... +....       ...+  
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i-------~~~i--  183 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAI-------FKGI--  183 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhh-------hhcc--
Confidence            35799999999998876655 455678999999999999999999998 676 34555432 11111       0000  


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                               ....+.||+|+||||++.
T Consensus       184 ---------~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        184 ---------IHKNERFDATLCNPPFHA  201 (321)
T ss_pred             ---------cccCCceEEEEeCCCCcC
Confidence                     013568999999999864

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.97  E-value=6.5e-09  Score=94.16  Aligned_cols=114  Identities=21%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHhhccC------CCcEEEEcccccHHHHHHHhc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459           44 TTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKF-----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK  112 (225)
Q Consensus        44 ~~~~~~~~L~~~~~~------~~~vlDiGcGtG~~~~~l~~~-----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~  112 (225)
                      +.+.+..+|.+....      +..|+|+|||+|.++..+++.     ++.+|+|+|.++.+....++.+..+++. ++++
T Consensus       166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~  244 (448)
T PF05185_consen  166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVT  244 (448)
T ss_dssp             HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEE
T ss_pred             HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEE
Confidence            445555666655433      468999999999998876654     3678999999999998888777788886 5688


Q ss_pred             EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEE
Q 041459          113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                      +...+.+.+.                       .+.++|+|++-++-     +...+.+....+.|||||+++-
T Consensus       245 vi~~d~r~v~-----------------------lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  245 VIHGDMREVE-----------------------LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             EEES-TTTSC-----------------------HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             EEeCcccCCC-----------------------CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence            8887766552                       46699999996542     2245678888899999999874

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.95  E-value=5.8e-09  Score=86.35  Aligned_cols=106  Identities=14%  Similarity=0.112  Sum_probs=83.6

Q ss_pred             CcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      -.+||||||.|.+.+.+|+ ++...++|+|+....+..|.+.+...++.|  +.+...++..+                 
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N--lri~~~DA~~~-----------------  110 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN--LRLLCGDAVEV-----------------  110 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc--EEEEcCCHHHH-----------------
Confidence            4799999999999998775 688899999999999999999999999853  56665554322                 


Q ss_pred             ccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          139 HEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                        ++.+.++++.|-|+.++|-.+           ....++.+.+.|||||.+.+.+...
T Consensus       111 --l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         111 --LDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             --HHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence              223335669999999988644           2467899999999999999964433

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.95  E-value=1.5e-08  Score=85.66  Aligned_cols=86  Identities=13%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++..  .  .++.+...+....              
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii~~D~~~~--------------   87 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A--GNVEIIEGDALKV--------------   87 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C--CCEEEEEeccccC--------------
Confidence            3467899999999999999998874 5799999999999999987643  1  3456666555433              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIV  170 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~  170 (225)
                                +...+|.|++|+|++.-..++..+.
T Consensus        88 ----------~~~~~d~Vv~NlPy~i~s~~~~~l~  112 (258)
T PRK14896         88 ----------DLPEFNKVVSNLPYQISSPITFKLL  112 (258)
T ss_pred             ----------CchhceEEEEcCCcccCcHHHHHHH
Confidence                      2335899999999875434443333

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.93  E-value=5.3e-09  Score=89.74  Aligned_cols=99  Identities=26%  Similarity=0.283  Sum_probs=76.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +++.|+|+|||+|.++..++..|+++|+++|-|. |.+.|++.++.|.+. +++.+.-+..+..                
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~-~rItVI~GKiEdi----------------  238 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLA-DRITVIPGKIEDI----------------  238 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCcc-ceEEEccCccccc----------------
Confidence            6889999999999999999999999999999765 999999999888765 5666554444332                


Q ss_pred             cccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEE
Q 041459          138 SHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~  181 (225)
                             +.+++.|+||+.|+-..+     .+.--.+.++|||.|..+-
T Consensus       239 -------eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  239 -------ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             -------cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence                   257889999998775432     2222345699999999875

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.93  E-value=4.6e-09  Score=86.32  Aligned_cols=113  Identities=15%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             CcEEEEcccccHHHHHHHh-cCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIK-FGA--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~-~~~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+||++|||.|.....+.+ .+.  -+++++|.+|.+++..+++.....   .++...+-|...-     .....+    
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~-----~~~~~~----  140 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSP-----SLKEPP----  140 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccch-----hccCCC----
Confidence            3799999999998888665 333  679999999999999998876554   2232222222111     011111    


Q ss_pred             ccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                               ..+.+|.|++-+.+     +-+...++++.++|||||.+++.+.+..++..++
T Consensus       141 ---------~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR  193 (264)
T KOG2361|consen  141 ---------EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR  193 (264)
T ss_pred             ---------CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence                     56788988775443     4467889999999999999999888766665554

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.93  E-value=8e-09  Score=88.13  Aligned_cols=127  Identities=20%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC--cceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK--KMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++..++|+|||-|+-.+-.-+.+...++|+||....++.|+++.....-..+  .+...+..++.+...+.+    .+
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d----~~  190 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD----LL  190 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH----hc
Confidence            457889999999999988887788889999999999999999988762221111  122333333333221111    11


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                      ++          ++.+||+|-|.+.+|.       .+.++.++.+.|+|||+++-+..   +...+...++..
T Consensus       191 e~----------~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP---dsd~Ii~rlr~~  250 (389)
T KOG1975|consen  191 EF----------KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP---DSDVIIKRLRAG  250 (389)
T ss_pred             cC----------CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC---cHHHHHHHHHhc
Confidence            11          3445999999887653       45678999999999999987533   445566666543

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=6.8e-09  Score=93.38  Aligned_cols=153  Identities=20%  Similarity=0.303  Sum_probs=104.5

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..++.|.++|+..|++...... .+...+.+.  +..++.++|++||||.+++.+++. ..+|+|+++++.++..|++|+
T Consensus       348 l~~ltF~iSp~AFFQ~Nt~~ae-vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA  425 (534)
T KOG2187|consen  348 LLGLTFRISPGAFFQTNTSAAE-VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNA  425 (534)
T ss_pred             cCCeEEEECCchhhccCcHHHH-HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcc
Confidence            5568889999988877654333 222333332  445789999999999999988775 677999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCcee-EEEeccchhHHH-HHHHHHHHhccCCeEE
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYD-VVIANILLNPLL-QLADHIVSYAKPGAVV  179 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-vIi~~~~~~~~~-~~l~~~~~~LkpgG~l  179 (225)
                      ..|++.|  .++..+.++..       ...++.+          ..+.-+ +++++++...+. .++..+..+-++.-.+
T Consensus       426 ~~NgisN--a~Fi~gqaE~~-------~~sl~~~----------~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv  486 (534)
T KOG2187|consen  426 QINGISN--ATFIVGQAEDL-------FPSLLTP----------CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV  486 (534)
T ss_pred             hhcCccc--eeeeecchhhc-------cchhccc----------CCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence            9999987  45555544322       1222111          112335 667788765443 4556666666689999


Q ss_pred             EEeccCCCcHHHHHHHHH
Q 041459          180 GISGILSEQLPHIINRYS  197 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~  197 (225)
                      |++|...-...+......
T Consensus       487 yvSCn~~t~ar~v~~lc~  504 (534)
T KOG2187|consen  487 YVSCNPHTAARNVIDLCS  504 (534)
T ss_pred             EEEcCHHHhhhhHHHhhc
Confidence            999987655555555544

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.92  E-value=9.2e-09  Score=87.04  Aligned_cols=124  Identities=12%  Similarity=0.147  Sum_probs=87.5

Q ss_pred             CCcEEEEccccc----HHHHHHHhcC------CCeEEEEeCCHHHHHHHHHHHHh-----cCCCCCcceEEEecCCCCCc
Q 041459           59 GELFLDYGTGSG----ILGIAAIKFG------AAMSVGVDIDPQAIKSAHQNAAL-----NNIGPKKMKLHLVPDRTFPA  123 (225)
Q Consensus        59 ~~~vlDiGcGtG----~~~~~l~~~~------~~~v~~vDi~~~~l~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~  123 (225)
                      ..+||.+||+||    ++++.+.+..      .-+|+|.|+|..+|+.|+.....     .+++.....-.+.....-.+
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            569999999999    5555555532      35799999999999999887654     33332222222323222234


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEe
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      .+++.+..+|.+..-|++......+.||+|+|..++     .....++..++..|+|||++++.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence            566777788888777777765456779999994433     23567899999999999999983

>PLN02823 spermine synthase

Probab=98.91  E-value=4.9e-08  Score=85.39  Aligned_cols=141  Identities=18%  Similarity=0.286  Sum_probs=95.6

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+++||.+|+|.|..+..+++. +..+++++|+++.+++.|++.+..+.  +.+.++++...|+..+           +.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----------L~  171 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----------LE  171 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----------Hh
Confidence            4679999999999999987774 56789999999999999998875432  3334666766655322           11


Q ss_pred             ccccccccCCCCCCceeEEEeccch--------hH-HHHHHH-HHHHhccCCeEEEEeccC------CCcHHHHHHHHHh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILL--------NP-LLQLAD-HIVSYAKPGAVVGISGIL------SEQLPHIINRYSE  198 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~--------~~-~~~~l~-~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~~  198 (225)
                      .          ..++||+|+++.+-        .- -.++++ .+.+.|+|||++++..-.      ......+.+.+++
T Consensus       172 ~----------~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~  241 (336)
T PLN02823        172 K----------RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ  241 (336)
T ss_pred             h----------CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence            1          35689999997421        11 245677 789999999998874221      1123456666666


Q ss_pred             hhhhhcccc------cCCceEEEeeee
Q 041459          199 FLEDILLSE------MDDWTCVSGTKK  219 (225)
Q Consensus       199 ~~~~~~~~~------~~~w~~~~~~k~  219 (225)
                      .|..+....      .+.|.-+.+.|+
T Consensus       242 vF~~v~~y~~~vPsf~~~w~f~~aS~~  268 (336)
T PLN02823        242 VFKYVVPYTAHVPSFADTWGWVMASDH  268 (336)
T ss_pred             hCCCEEEEEeecCCCCCceEEEEEeCC
Confidence            665544432      245887777765

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.90  E-value=2.5e-08  Score=84.98  Aligned_cols=89  Identities=19%  Similarity=0.143  Sum_probs=65.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++...     .++.+...|...++.            
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~------------  101 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDL------------  101 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCH------------
Confidence            34678999999999999999988764 799999999999999876532     235666665544311            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY  172 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~  172 (225)
                                +...++.|++|+|+..-..++..+...
T Consensus       102 ----------~~~~~~~vv~NlPY~iss~ii~~~l~~  128 (272)
T PRK00274        102 ----------SELQPLKVVANLPYNITTPLLFHLLEE  128 (272)
T ss_pred             ----------HHcCcceEEEeCCccchHHHHHHHHhc
Confidence                      111158999999998767766666543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.90  E-value=2.4e-09  Score=86.82  Aligned_cols=123  Identities=12%  Similarity=0.177  Sum_probs=73.1

Q ss_pred             CCCcEEEEccccc----HHHHHHHhc---C---CCeEEEEeCCHHHHHHHHHHHHhc----CCCCCcce--EEEecCCCC
Q 041459           58 GGELFLDYGTGSG----ILGIAAIKF---G---AAMSVGVDIDPQAIKSAHQNAALN----NIGPKKMK--LHLVPDRTF  121 (225)
Q Consensus        58 ~~~~vlDiGcGtG----~~~~~l~~~---~---~~~v~~vDi~~~~l~~a~~~~~~~----~~~~~~~~--~~~~~~~~~  121 (225)
                      +..+||..||+||    ++++.+.+.   .   .-+|+|.|+|+.+|+.|++.....    +++.....  +...+++. 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~-  109 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG-  109 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC-
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc-
Confidence            3469999999999    455555551   1   247999999999999998876421    12111111  11222322 


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                       ..+.+.+...|.+...|++......+.||+|+|..++-     ....+++.+.+.|+|||++++.
T Consensus       110 -~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  110 -YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             -TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             -eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence             23556777788888777777444677899999955542     2467899999999999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.90  E-value=1.2e-08  Score=83.51  Aligned_cols=142  Identities=21%  Similarity=0.209  Sum_probs=96.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.|.+|||.|.|-|+.++.+++.|+.+|+.+|.+|..|+.|.-|--..++....+++..+|+..       .+..+   
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e-------~V~~~---  201 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE-------VVKDF---  201 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH-------HHhcC---
Confidence            55799999999999999999999999999999999999999976644344332334555544321       12222   


Q ss_pred             cccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEe-cc-C-----CCcHHHHHHHHHhh-hh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGIS-GI-L-----SEQLPHIINRYSEF-LE  201 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~-~~-~-----~~~~~~~~~~~~~~-~~  201 (225)
                                ++.+||+|+-+||--.      -.++-.++++.|||||.++-- +. +     .+-...+.+.+++. |.
T Consensus       202 ----------~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~  271 (287)
T COG2521         202 ----------DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE  271 (287)
T ss_pred             ----------CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence                      6788999999988522      245778899999999998752 22 2     23344555666654 55


Q ss_pred             hhcccccCCceEEEeeee
Q 041459          202 DILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       202 ~~~~~~~~~w~~~~~~k~  219 (225)
                      .+.  ...+|-.+.+.|+
T Consensus       272 ~v~--~~~~~~gv~A~k~  287 (287)
T COG2521         272 VVK--KVREALGVVAVKP  287 (287)
T ss_pred             eee--eehhccceEEecC
Confidence            333  3344656666553

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.87  E-value=3.3e-08  Score=86.82  Aligned_cols=102  Identities=25%  Similarity=0.297  Sum_probs=81.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCC------C----------------------------------eEEEEeCCHHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGA------A----------------------------------MSVGVDIDPQAIKSA   97 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~------~----------------------------------~v~~vDi~~~~l~~a   97 (225)
                      ++..++|.-||+|++++.+|..+.      .                                  .++|+|+++.+++.|
T Consensus       191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A  270 (381)
T COG0116         191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA  270 (381)
T ss_pred             CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence            567999999999999998775431      1                                  378999999999999


Q ss_pred             HHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----------HHHHH
Q 041459           98 HQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLA  166 (225)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l  166 (225)
                      +.|+...|+. +.+.+...+...++.                      +.+.+|+||||||+..           +..+.
T Consensus       271 k~NA~~AGv~-d~I~f~~~d~~~l~~----------------------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg  327 (381)
T COG0116         271 KANARAAGVG-DLIEFKQADATDLKE----------------------PLEEYGVVISNPPYGERLGSEALVAKLYREFG  327 (381)
T ss_pred             HHHHHhcCCC-ceEEEEEcchhhCCC----------------------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence            9999999988 678888877766531                      2268999999999843           45566


Q ss_pred             HHHHHhccCCeEEEEe
Q 041459          167 DHIVSYAKPGAVVGIS  182 (225)
Q Consensus       167 ~~~~~~LkpgG~l~~~  182 (225)
                      ..+.+.++--+..+++
T Consensus       328 ~~lk~~~~~ws~~v~t  343 (381)
T COG0116         328 RTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHhcCCceEEEE
Confidence            7777888877888775

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.86  E-value=3.2e-08  Score=85.15  Aligned_cols=89  Identities=19%  Similarity=0.293  Sum_probs=66.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++..++.. .++.+...|....              
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~--------------   97 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVIEGDALKT--------------   97 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECCHhhh--------------
Confidence            4467899999999999999988764 56999999999999999988765532 3466666554322              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIV  170 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~  170 (225)
                                ....||+|++|+||+.-..++-.+.
T Consensus        98 ----------~~~~~d~VvaNlPY~Istpil~~ll  122 (294)
T PTZ00338         98 ----------EFPYFDVCVANVPYQISSPLVFKLL  122 (294)
T ss_pred             ----------cccccCEEEecCCcccCcHHHHHHH
Confidence                      2346899999999976555444443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.86  E-value=4.6e-08  Score=89.11  Aligned_cols=117  Identities=16%  Similarity=0.176  Sum_probs=85.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+|||+|.-+.+++..  +...+++.|+++.-++..++|+...++.+  +.+...++..+..        . 
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n--v~v~~~D~~~~~~--------~-  179 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN--VALTHFDGRVFGA--------A-  179 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCchhhhhh--------h-
Confidence            468899999999999999988763  34689999999999999999999988864  4455444433210        0 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEeccC--C
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGIL--S  186 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~  186 (225)
                                  ....||.|+++.|...                         ..+++..+.++|||||+++.++..  .
T Consensus       180 ------------~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~  247 (470)
T PRK11933        180 ------------LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR  247 (470)
T ss_pred             ------------chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence                        2456999999877320                         256899999999999999886332  3


Q ss_pred             CcHHHHHHH
Q 041459          187 EQLPHIINR  195 (225)
Q Consensus       187 ~~~~~~~~~  195 (225)
                      .+.++..+.
T Consensus       248 eENE~vV~~  256 (470)
T PRK11933        248 EENQAVCLW  256 (470)
T ss_pred             HHHHHHHHH
Confidence            444444433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.85  E-value=1.4e-09  Score=88.70  Aligned_cols=96  Identities=26%  Similarity=0.395  Sum_probs=68.5

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      -.+++|+|||||..+..+... ..+++|+|+|.+|++.|..+-.+..+.       ..+...|           +.    
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L~-------~Aea~~F-----------l~----  182 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTLY-------VAEAVLF-----------LE----  182 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHHH-------HHHHHHH-----------hh----
Confidence            469999999999999887665 456899999999999998654322211       1111101           00    


Q ss_pred             ccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEe
Q 041459          139 HEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                           ....++||+|...-++   ..+..++..+...|+|||.+.||
T Consensus       183 -----~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS  224 (287)
T COG4976         183 -----DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS  224 (287)
T ss_pred             -----hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence                 0146789999985433   34677888899999999999997

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.85  E-value=6.7e-08  Score=81.39  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=64.7

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+. .++++|+++.+++.++.+...    ..++.+...+....+              
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~--------------   88 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVD--------------   88 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCC--------------
Confidence            4678999999999999999988764 599999999999999877632    134556655554331              


Q ss_pred             ccccccCCCCCCcee---EEEeccchhHHHHHHHHHHH
Q 041459          137 SSHEIRGISETEKYD---VVIANILLNPLLQLADHIVS  171 (225)
Q Consensus       137 ~~~~~~~~~~~~~~D---vIi~~~~~~~~~~~l~~~~~  171 (225)
                                ...+|   +|++|+|++....++..+..
T Consensus        89 ----------~~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        89 ----------LPDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             ----------hhHcCCcceEEEcCChhhHHHHHHHHhc
Confidence                      12355   99999999877777776664

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=5.1e-09  Score=79.79  Aligned_cols=79  Identities=23%  Similarity=0.322  Sum_probs=61.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .|+.++|+|||+|.+++..+-.+...++|+|++|.+++.+.+|+....++.+.+++...+...                 
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~-----------------  110 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLEL-----------------  110 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhc-----------------
Confidence            589999999999999987777788889999999999999999998777653222222211110                 


Q ss_pred             cccccCCCCCCceeEEEeccchhH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                              ..+.||..+.|+|+..
T Consensus       111 --------~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen  111 --------KGGIFDTAVINPPFGT  126 (185)
T ss_pred             --------cCCeEeeEEecCCCCc
Confidence                    3578999999999854

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.83  E-value=8.2e-08  Score=79.63  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=36.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHH
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS   96 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~   96 (225)
                      .+++++||+|||||.++..+++.|+.+++|+|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3678999999999999999999999999999999988866

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.82  E-value=2.1e-08  Score=86.75  Aligned_cols=120  Identities=27%  Similarity=0.359  Sum_probs=74.1

Q ss_pred             CchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHh--------cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcc
Q 041459           42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIK--------FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM  111 (225)
Q Consensus        42 ~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~--------~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~  111 (225)
                      +.|...+..++..+  ..++.+|+|.+||+|.+...+.+        ....+++|+|+++.++..|+.++..++......
T Consensus        28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~  107 (311)
T PF02384_consen   28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI  107 (311)
T ss_dssp             C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred             eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence            33444444444333  33567899999999999887665        256789999999999999999988777654333


Q ss_pred             eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH------------------------HHHHH
Q 041459          112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------------------------LQLAD  167 (225)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------------------~~~l~  167 (225)
                      .+...+.-..+                    .......||+|++|||+...                        ..++.
T Consensus       108 ~i~~~d~l~~~--------------------~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~  167 (311)
T PF02384_consen  108 NIIQGDSLEND--------------------KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIE  167 (311)
T ss_dssp             EEEES-TTTSH--------------------SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHH
T ss_pred             ccccccccccc--------------------ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHH
Confidence            34443321110                    00024689999999996321                        13678


Q ss_pred             HHHHhccCCeEEEE
Q 041459          168 HIVSYAKPGAVVGI  181 (225)
Q Consensus       168 ~~~~~LkpgG~l~~  181 (225)
                      .+.+.||+||.+.+
T Consensus       168 ~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  168 HALSLLKPGGRAAI  181 (311)
T ss_dssp             HHHHTEEEEEEEEE
T ss_pred             HHHhhcccccceeE
Confidence            89999999998655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.77  E-value=2.3e-07  Score=76.79  Aligned_cols=107  Identities=10%  Similarity=0.128  Sum_probs=71.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc-------C---CCCCcceEEEecCCCCCccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN-------N---IGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ++.+||..|||.|.-+.++++.|.. |+|+|+|+.+++.+.+.....       .   .....+.+...|.-.++.    
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~----  117 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK----  117 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc----
Confidence            5689999999999999999999887 999999999999986521100       0   001223344333322210    


Q ss_pred             cccccccccccccccCCCCCCceeEEEec-----cchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                     .-...+.||.|+-.     .+.+...++++.+.++|+|||.+++..+
T Consensus       118 ---------------~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        118 ---------------IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             ---------------cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence                           00023578887653     3345567899999999999999877433

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.77  E-value=2.9e-08  Score=81.66  Aligned_cols=98  Identities=13%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH  139 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (225)
                      ..++|+|||+|-.++.++.. ..+|+|+|+++.||+.|++.....-.. ....+...+...+                  
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L------------------   94 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDL------------------   94 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccccc-CCccccccccccc------------------
Confidence            38999999999666777776 567999999999999887653311110 1111111111111                  


Q ss_pred             cccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCe-EEEE
Q 041459          140 EIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGA-VVGI  181 (225)
Q Consensus       140 ~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG-~l~~  181 (225)
                          .-.++++|+|++.-.+|+  +.++.+.+++.||+.| ++.+
T Consensus        95 ----~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   95 ----LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ----cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence                113678999999888887  4678999999999977 5444

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.75  E-value=2.4e-08  Score=85.51  Aligned_cols=124  Identities=10%  Similarity=0.151  Sum_probs=79.6

Q ss_pred             CCcEEEEccccc----HHHHHHHhc-C----CCeEEEEeCCHHHHHHHHHHHHh----cCCCCCcceEEEecC---CCCC
Q 041459           59 GELFLDYGTGSG----ILGIAAIKF-G----AAMSVGVDIDPQAIKSAHQNAAL----NNIGPKKMKLHLVPD---RTFP  122 (225)
Q Consensus        59 ~~~vlDiGcGtG----~~~~~l~~~-~----~~~v~~vDi~~~~l~~a~~~~~~----~~~~~~~~~~~~~~~---~~~~  122 (225)
                      ..+||..||+||    ++++.+.+. +    ..+|+|+|+|+.+|+.|++....    .+++.....-.+...   ..-.
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            369999999999    455555553 1    24799999999999999987531    111111111111110   0001


Q ss_pred             ccccccccccccccccccccC-CCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459          123 ASMNERVDGIVEDLSSHEIRG-ISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      +.+.+.+...|.+...|++.. ....+.||+|+|..++.     ....++..+.+.|+|||++++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            234455666777777666652 22357899999954442     3567899999999999998884

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.4e-07  Score=76.21  Aligned_cols=115  Identities=22%  Similarity=0.330  Sum_probs=82.2

Q ss_pred             chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CC--CeEEEEeCCHHHHHHHHHHHHhcC--------CCCCcc
Q 041459           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GA--AMSVGVDIDPQAIKSAHQNAALNN--------IGPKKM  111 (225)
Q Consensus        43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~--~~v~~vDi~~~~l~~a~~~~~~~~--------~~~~~~  111 (225)
                      -+....++.|...+++|.+.||+|+|||+++.+++.. +.  ...+|+|.-++.++.+++|+...-        +....+
T Consensus        67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l  146 (237)
T KOG1661|consen   67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL  146 (237)
T ss_pred             HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence            3556677888877889999999999999999988753 22  224999999999999999987433        222345


Q ss_pred             eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      .+..+++....                      .+..+||.|.+...-   .+..+.+..-|++||.+++-
T Consensus       147 ~ivvGDgr~g~----------------------~e~a~YDaIhvGAaa---~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  147 SIVVGDGRKGY----------------------AEQAPYDAIHVGAAA---SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             EEEeCCccccC----------------------CccCCcceEEEccCc---cccHHHHHHhhccCCeEEEe
Confidence            55555554332                      156789999985322   23445666788899988873

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.66  E-value=3.1e-07  Score=87.92  Aligned_cols=104  Identities=24%  Similarity=0.279  Sum_probs=70.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc------C-------------------------------------CCeEEEEeCCHHH
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF------G-------------------------------------AAMSVGVDIDPQA   93 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~------~-------------------------------------~~~v~~vDi~~~~   93 (225)
                      +++..++|.+||+|++.+.++..      |                                     ..+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            45789999999999999986541      0                                     1258999999999


Q ss_pred             HHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------HHHHH
Q 041459           94 IKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------LLQLA  166 (225)
Q Consensus        94 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l  166 (225)
                      ++.|+.|+..+++. +.+.+...+...++.                    ....+.+|+|++|||+..       ...+.
T Consensus       269 v~~A~~N~~~~g~~-~~i~~~~~D~~~~~~--------------------~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY  327 (702)
T PRK11783        269 IQAARKNARRAGVA-ELITFEVKDVADLKN--------------------PLPKGPTGLVISNPPYGERLGEEPALIALY  327 (702)
T ss_pred             HHHHHHHHHHcCCC-cceEEEeCChhhccc--------------------ccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence            99999999999986 345665555433311                    002346999999999832       22222


Q ss_pred             HH---HHHhccCCeEEEE
Q 041459          167 DH---IVSYAKPGAVVGI  181 (225)
Q Consensus       167 ~~---~~~~LkpgG~l~~  181 (225)
                      ..   ..+...+|+.+++
T Consensus       328 ~~lg~~lk~~~~g~~~~l  345 (702)
T PRK11783        328 SQLGRRLKQQFGGWNAAL  345 (702)
T ss_pred             HHHHHHHHHhCCCCeEEE
Confidence            22   2333348877765

>PRK00536 speE spermidine synthase; Provisional

Probab=98.65  E-value=1.5e-06  Score=73.55  Aligned_cols=134  Identities=13%  Similarity=0.042  Sum_probs=90.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++||=+|.|.|..+..+++.+. +++.||+++.+++.+++.++..  .+++.++++...    +           .+ 
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-----------~~-  134 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-----------LD-  134 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-----------hh-
Confidence            468999999999999999999864 8999999999999999866532  233334444321    0           00 


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc--C--CCcHHHHHHHHHhhhhhhccc-----
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI--L--SEQLPHIINRYSEFLEDILLS-----  206 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~-----  206 (225)
                               ...++||+||++..+.  ....+.+.+.|+|||+++...-  .  .+....+.+.+++.|..+...     
T Consensus       135 ---------~~~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp  203 (262)
T PRK00536        135 ---------LDIKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLR  203 (262)
T ss_pred             ---------ccCCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCC
Confidence                     0246899999986543  5566789999999999998421  1  233445556666555433222     


Q ss_pred             ccCCceEEEeeee
Q 041459          207 EMDDWTCVSGTKK  219 (225)
Q Consensus       207 ~~~~w~~~~~~k~  219 (225)
                      .-|.|.-..+.|+
T Consensus       204 ~~g~wgf~~aS~~  216 (262)
T PRK00536        204 ILSNKGYIYASFK  216 (262)
T ss_pred             CcchhhhheecCC
Confidence            2367876666654

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.65  E-value=3.1e-07  Score=77.18  Aligned_cols=123  Identities=19%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+++||-+|.|.|..+..+.+.+ ..++++||+++.+++.|++.+....  ....++++...|+..+           |.
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-----------l~  144 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-----------LK  144 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-----------HH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-----------HH
Confidence            57999999999999999988865 6789999999999999998876432  2345677776655322           21


Q ss_pred             ccccccccCCCCCC-ceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhhhh
Q 041459          135 DLSSHEIRGISETE-KYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLE  201 (225)
Q Consensus       135 ~~~~~~~~~~~~~~-~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~  201 (225)
                      .          ..+ +||+|+.+..-.       .-.++++.+.+.|+|||++++....    ......+.+.++..|.
T Consensus       145 ~----------~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  145 E----------TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP  213 (246)
T ss_dssp             T----------SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred             h----------ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence            1          233 899999965431       1367889999999999999985321    1233334445555444

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.1e-07  Score=78.21  Aligned_cols=144  Identities=17%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             eeecCceEEeeCCCCCCCCcceeEEec-ccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCC
Q 041459            6 VEVTKGLWIVPEWSTPPDVQATNIILN-PGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAA   82 (225)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~   82 (225)
                      |.+++..+.+|+- ...  .+..+++. +.+.|-+..   .-.+...|..+  ..++..+||+|+.||.++.++++.|+.
T Consensus        30 V~Vng~~v~KP~~-~V~--~~~~i~v~~~~~~yVSRG---~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk  103 (245)
T COG1189          30 VLVNGEKVTKPSQ-LVD--IDDEIEVKGEEQPYVSRG---GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAK  103 (245)
T ss_pred             EEECCEEecCcce-ecC--CCceEEEcccCcCccccH---HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCc
Confidence            7788888888882 222  33455554 555542211   12233344433  346899999999999999999999999


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH
Q 041459           83 MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL  162 (225)
Q Consensus        83 ~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~  162 (225)
                      +|+|+|+.-..+.+--++-.      ..+.+...+...+..            .      .  -.+..|+++|+..+..+
T Consensus       104 ~VyavDVG~~Ql~~kLR~d~------rV~~~E~tN~r~l~~------------~------~--~~~~~d~~v~DvSFISL  157 (245)
T COG1189         104 HVYAVDVGYGQLHWKLRNDP------RVIVLERTNVRYLTP------------E------D--FTEKPDLIVIDVSFISL  157 (245)
T ss_pred             EEEEEEccCCccCHhHhcCC------cEEEEecCChhhCCH------------H------H--cccCCCeEEEEeehhhH
Confidence            99999998876655433211      112222222222110            0      0  12367999999999999


Q ss_pred             HHHHHHHHHhccCCeEEEE
Q 041459          163 LQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       163 ~~~l~~~~~~LkpgG~l~~  181 (225)
                      ..++..+..++++++.++.
T Consensus       158 ~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         158 KLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             HHHHHHHHHhcCCCceEEE
Confidence            9999999999999988776

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.64  E-value=1.2e-07  Score=77.42  Aligned_cols=101  Identities=19%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      ..+.||.|||-|+++-.++..-..+|..+|..+..++.|++.+....  .....+.......+                 
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f-----------------  116 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDF-----------------  116 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG------------------
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhc-----------------
Confidence            46899999999999998766558899999999999999997654311  11123333332222                 


Q ss_pred             ccccCCCC-CCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          139 HEIRGISE-TEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       139 ~~~~~~~~-~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                            .+ ..+||+|.+.+.+.+     +..++.++...|+|+|++++-++
T Consensus       117 ------~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN  162 (218)
T PF05891_consen  117 ------TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN  162 (218)
T ss_dssp             ---------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence                  23 468999999988755     56789999999999999998544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.63  E-value=9e-07  Score=72.52  Aligned_cols=108  Identities=17%  Similarity=0.269  Sum_probs=83.1

Q ss_pred             CCCcEEEEcccccHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++++||+|.-||.-++..|. . ...+++++|+++...+.+....+..++. +++.+..+++-       +-+..++.+
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~-------esLd~l~~~  144 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPAL-------ESLDELLAD  144 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchh-------hhHHHHHhc
Confidence            689999999999988887554 3 4578999999999999998888888876 56666555432       112222221


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      .         +.+.||++|.+.--..+..+.+++.+++++||++++-
T Consensus       145 ~---------~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  145 G---------ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             C---------CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence            1         5678999999877777779999999999999999984

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.61  E-value=1.3e-07  Score=84.08  Aligned_cols=148  Identities=22%  Similarity=0.315  Sum_probs=92.5

Q ss_pred             ceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhh---ccCCCcEEEEcccccHHHHHH-Hh-cCCCeEE
Q 041459           11 GLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSL---IKGGELFLDYGTGSGILGIAA-IK-FGAAMSV   85 (225)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~---~~~~~~vlDiGcGtG~~~~~l-~~-~~~~~v~   85 (225)
                      .++++|.-.. ....+..+.++|.|.|   .+....++..++...   ..++.++||.-+|||.-++-. .+ .+..+|+
T Consensus         3 ~~i~v~~~~~-~~~~~~~vFYNP~~~~---nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~   78 (377)
T PF02005_consen    3 AKIKVPEANI-TIPKKAPVFYNPVMEF---NRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVT   78 (377)
T ss_dssp             EEEEEE---S-STTTTSSSS--GGGHH---HHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEE
T ss_pred             eEEEeCCcee-ecCCCCCcccCcchhc---ccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEE
Confidence            3445555321 1223346778999988   355555553323222   234569999999999998864 45 4678899


Q ss_pred             EEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHH
Q 041459           86 GVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQL  165 (225)
Q Consensus        86 ~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~  165 (225)
                      +-|+|+.+.+..++|+..|++..+.+.+...|++.+       +.              .....||+|=.+| +.....+
T Consensus        79 ~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-------l~--------------~~~~~fD~IDlDP-fGSp~pf  136 (377)
T PF02005_consen   79 ANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-------LY--------------SRQERFDVIDLDP-FGSPAPF  136 (377)
T ss_dssp             EEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-------HC--------------HSTT-EEEEEE---SS--HHH
T ss_pred             EecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-------hh--------------hccccCCEEEeCC-CCCccHh
Confidence            999999999999999999998854566665544322       00              1467899998766 6667889


Q ss_pred             HHHHHHhccCCeEEEEecc
Q 041459          166 ADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       166 l~~~~~~LkpgG~l~~~~~  184 (225)
                      ++.+.+.++.||.+++++.
T Consensus       137 ldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  137 LDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             HHHHHHHEEEEEEEEEEE-
T ss_pred             HHHHHHHhhcCCEEEEecc
Confidence            9999999999999999643

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.59  E-value=4.3e-07  Score=83.77  Aligned_cols=119  Identities=14%  Similarity=0.058  Sum_probs=86.0

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+-.+||||||.|.+...+|. ++...++|+|+....+..+.+.+...++.|  +.+...+...+               
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N--~~~~~~~~~~~---------------  409 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN--FLLFPNNLDLI---------------  409 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe--EEEEcCCHHHH---------------
Confidence            356899999999999998776 688889999999999999988888778765  44433222111               


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                           ....+++++|.|++++|-.++           ..+++.+.+.|||||.+.+.+...+......+.+.+
T Consensus       410 -----~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~  477 (506)
T PRK01544        410 -----LNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ  477 (506)
T ss_pred             -----HHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence                 111157789999999886542           467899999999999999865544444444444443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.58  E-value=6.3e-07  Score=70.34  Aligned_cols=81  Identities=19%  Similarity=0.224  Sum_probs=60.9

Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCC-CCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--
Q 041459           85 VGVDIDPQAIKSAHQNAALNNIG-PKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--  161 (225)
Q Consensus        85 ~~vDi~~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--  161 (225)
                      +|+|+|+.|++.|+++....... ..++.+...+...++.                      ++++||+|++...+++  
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----------------------~~~~fD~v~~~~~l~~~~   58 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----------------------DDCEFDAVTMGYGLRNVV   58 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----------------------CCCCeeEEEecchhhcCC
Confidence            48999999999998776532211 1246677777665532                      5678999999877654  


Q ss_pred             -HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459          162 -LLQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       162 -~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                       ....++++.+.|||||.+++.++...
T Consensus        59 d~~~~l~ei~rvLkpGG~l~i~d~~~~   85 (160)
T PLN02232         59 DRLRAMKEMYRVLKPGSRVSILDFNKS   85 (160)
T ss_pred             CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence             67789999999999999998877643

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=9.2e-07  Score=71.74  Aligned_cols=123  Identities=18%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|+|+|+.+|..+..+++. + ..+|+|+|+.|-           ....+  +.+...+.  ...+..+.+... 
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~--V~~iq~d~--~~~~~~~~l~~~-  106 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPG--VIFLQGDI--TDEDTLEKLLEA-  106 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCC--ceEEeeec--cCccHHHHHHHH-
Confidence            668999999999999999998875 2 345999999882           22222  33333322  211111222221 


Q ss_pred             cccccccccCCCCCCceeEEEeccch--------hHHH------HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL--------NPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~--------~~~~------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                 .....+|+|++++..        ++++      ..++-+...|+|||.+++..+......++...+++.
T Consensus       107 -----------l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~  175 (205)
T COG0293         107 -----------LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL  175 (205)
T ss_pred             -----------cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh
Confidence                       145568999997653        3322      235666789999999999999999999999999988


Q ss_pred             hhhhcc
Q 041459          200 LEDILL  205 (225)
Q Consensus       200 ~~~~~~  205 (225)
                      |+.+..
T Consensus       176 F~~v~~  181 (205)
T COG0293         176 FRKVKI  181 (205)
T ss_pred             hceeEE
Confidence            765554

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1.4e-06  Score=76.96  Aligned_cols=143  Identities=18%  Similarity=0.169  Sum_probs=94.7

Q ss_pred             eecCCCCchHHHHHHHHH--hhccCCCcEEEEcccccHHHHHHHhcC---CCeEEEEeCCHHHHHHHHHHHHhcCCCCCc
Q 041459           36 AFGTGEHATTKLCLLLLQ--SLIKGGELFLDYGTGSGILGIAAIKFG---AAMSVGVDIDPQAIKSAHQNAALNNIGPKK  110 (225)
Q Consensus        36 ~f~~~~~~~~~~~~~~L~--~~~~~~~~vlDiGcGtG~~~~~l~~~~---~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~  110 (225)
                      .|..|....+.....+..  -.+++|.+|||++++.|.-+.++++..   ...|+++|+++.-++..++|+...|+.+  
T Consensus       132 ~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n--  209 (355)
T COG0144         132 EFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN--  209 (355)
T ss_pred             hhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc--
Confidence            344454444443333332  236689999999999999988877642   2446999999999999999999999875  


Q ss_pred             ceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------------HHHH
Q 041459          111 MKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQL  165 (225)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~  165 (225)
                      +.....++..++.                   ......+||.|+.+.|...                         ..++
T Consensus       210 v~~~~~d~~~~~~-------------------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~i  270 (355)
T COG0144         210 VIVVNKDARRLAE-------------------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEI  270 (355)
T ss_pred             eEEEecccccccc-------------------cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHH
Confidence            4455444432210                   0002236999999877311                         3468


Q ss_pred             HHHHHHhccCCeEEEEecc--CCCcHHH-HHHHHHhh
Q 041459          166 ADHIVSYAKPGAVVGISGI--LSEQLPH-IINRYSEF  199 (225)
Q Consensus       166 l~~~~~~LkpgG~l~~~~~--~~~~~~~-~~~~~~~~  199 (225)
                      +..+.++|||||.++.++.  ...+.++ +...+++.
T Consensus       271 L~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~  307 (355)
T COG0144         271 LAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH  307 (355)
T ss_pred             HHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence            9999999999999988633  2334444 44455443

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.56  E-value=1.4e-06  Score=70.63  Aligned_cols=120  Identities=16%  Similarity=0.164  Sum_probs=79.2

Q ss_pred             HHHHHHhhccCCCc-EEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC--cceEEEecCCCCCc
Q 041459           48 CLLLLQSLIKGGEL-FLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPK--KMKLHLVPDRTFPA  123 (225)
Q Consensus        48 ~~~~L~~~~~~~~~-vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~  123 (225)
                      +++.|...+.+... |||||||||-.+.++++ .+.-...-.|.++..+...+..+...++.+-  .+.+..... ..+.
T Consensus        14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~-~w~~   92 (204)
T PF06080_consen   14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP-PWPW   92 (204)
T ss_pred             HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC-CCcc
Confidence            34555555555554 99999999999998765 6777788999999988777776666665542  122222111 1110


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                        ..              ..-.....||.|++..++|.     ...++..+.++|++||.+++-+.
T Consensus        93 --~~--------------~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   93 --EL--------------PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             --cc--------------ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              00              00003468999999666553     45688999999999999998544

The function of this family is unknown.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.55  E-value=3.9e-07  Score=75.22  Aligned_cols=123  Identities=20%  Similarity=0.263  Sum_probs=76.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-cCCC---------CCcceEEEecCCCCCccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-NNIG---------PKKMKLHLVPDRTFPASM  125 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~  125 (225)
                      .+++.+||..|||.|.-..++++.|. +|+|+|+|+.+++.+.+.... ....         .+.+.+..  ++.+... 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~--gDfF~l~-  110 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC--GDFFELP-  110 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE--S-TTTGG-
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE--cccccCC-
Confidence            34567999999999999999999986 699999999999998432211 1111         01223333  3333110 


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccc-----hhHHHHHHHHHHHhccCCeEEEEeccC-----------CCcH
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGIL-----------SEQL  189 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------~~~~  189 (225)
                               .         ...++||+|+=...     .....++++.+.++|+|||.+++.++.           .-..
T Consensus       111 ---------~---------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~  172 (218)
T PF05724_consen  111 ---------P---------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTE  172 (218)
T ss_dssp             ---------G---------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----H
T ss_pred             ---------h---------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCH
Confidence                     0         02247999987433     345678999999999999995442221           1234


Q ss_pred             HHHHHHHHhhh
Q 041459          190 PHIINRYSEFL  200 (225)
Q Consensus       190 ~~~~~~~~~~~  200 (225)
                      .++.+.+...|
T Consensus       173 ~ev~~l~~~~f  183 (218)
T PF05724_consen  173 EEVRELFGPGF  183 (218)
T ss_dssp             HHHHHHHTTTE
T ss_pred             HHHHHHhcCCc
Confidence            55666666554

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.52  E-value=2.8e-07  Score=75.56  Aligned_cols=114  Identities=14%  Similarity=0.055  Sum_probs=89.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ....++|+|||-|.+..++...+..+++-+|.|-.|++.++.. ..+++   .+....++-+.+++              
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i---~~~~~v~DEE~Ldf--------------  133 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI---ETSYFVGDEEFLDF--------------  133 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce---EEEEEecchhcccc--------------
Confidence            4568999999999999999888899999999999999998753 22332   23344445444432              


Q ss_pred             cccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                              .++++|+|++...+|+..   ..+.++...|||+|.++.+-++.+...+++-.++
T Consensus       134 --------~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slq  188 (325)
T KOG2940|consen  134 --------KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ  188 (325)
T ss_pred             --------cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhh
Confidence                    678999999998888754   4577888999999999998888888888876665

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.50  E-value=2e-07  Score=73.28  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=44.2

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP  117 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~  117 (225)
                      .|+|++||.|..++.+|+. ..+|+++|+++..++.|++|+...|+. +++.+...+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD   56 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGD   56 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCC
Confidence            6899999999999999988 466999999999999999999988875 566666654

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.49  E-value=8e-07  Score=76.20  Aligned_cols=85  Identities=28%  Similarity=0.404  Sum_probs=49.2

Q ss_pred             CCcEEEEccccc-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           59 GELFLDYGTGSG-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        59 ~~~vlDiGcGtG-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ..++||||||.. .+.+..++....+++|.|+++.+++.|++|+..| ++. +.+.+........      .+.+++   
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~------i~~~i~---  172 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDN------IFDGII---  172 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-S------STTTST---
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCccc------cchhhh---
Confidence            357999999986 4456555544678999999999999999999999 776 6777765543211      111111   


Q ss_pred             ccccccCCCCCCceeEEEeccchhH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                              ...+.||+.+||||++.
T Consensus       173 --------~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  173 --------QPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             --------T--S-EEEEEE-----S
T ss_pred             --------cccceeeEEecCCcccc
Confidence                    13468999999999865

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.49  E-value=6.6e-07  Score=82.94  Aligned_cols=47  Identities=23%  Similarity=0.097  Sum_probs=38.3

Q ss_pred             CCcEEEEcccccHHHHHHHhc-C--------CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           59 GELFLDYGTGSGILGIAAIKF-G--------AAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~-~--------~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ..+|+|.|||+|.+...++.. .        ...++|+|+++.++..|+.++...+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            458999999999998876542 1        1568999999999999999887554

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.47  E-value=1.3e-06  Score=72.97  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=66.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ...++||+|+|.|..+..++.. ..++++.|.|+.|....+    ..|+.     +.  +...+..              
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~----~kg~~-----vl--~~~~w~~--------------  147 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS----KKGFT-----VL--DIDDWQQ--------------  147 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH----hCCCe-----EE--ehhhhhc--------------
Confidence            4568999999999999998775 566999999999965443    34533     21  1111210              


Q ss_pred             cccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              .+.+||+|.|-..++   .+..+++.+++.|+|+|++++.
T Consensus       148 --------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  148 --------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             --------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence                    345799999955543   3677899999999999999873

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.46  E-value=1.6e-06  Score=72.36  Aligned_cols=94  Identities=21%  Similarity=0.325  Sum_probs=69.5

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ...+|+|+|+|+|.++..+++ ++..+++..|. |.+++.+++        .+++.+..++  .+..             
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd--~f~~-------------  155 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGD--FFDP-------------  155 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES---TTTC-------------
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------cccccccccc--HHhh-------------
Confidence            456899999999999998765 68889999998 889988887        1345555443  3210             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCC--eEEEEeccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPG--AVVGISGIL  185 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lkpg--G~l~~~~~~  185 (225)
                               .+. +|+++....++.     -..+++++++.|+||  |.|++.+..
T Consensus       156 ---------~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  156 ---------LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             ---------CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             ---------hcc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence                     233 999999777755     456899999999999  999987664

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.46  E-value=1.3e-06  Score=69.61  Aligned_cols=121  Identities=17%  Similarity=0.280  Sum_probs=69.9

Q ss_pred             CCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +.+++|+||++|.++..+++.+  ..+++|+|+.+.           ....+    .....++....+..+.+...+.  
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~----~~~i~~d~~~~~~~~~i~~~~~--   86 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN----VSFIQGDITNPENIKDIRKLLP--   86 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT----EEBTTGGGEEEEHSHHGGGSHG--
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc----eeeeecccchhhHHHhhhhhcc--
Confidence            4899999999999999999876  688999999885           11111    1111111110000011111100  


Q ss_pred             ccccccCCCCCCceeEEEeccch-----------hHH---HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhh
Q 041459          137 SSHEIRGISETEKYDVVIANILL-----------NPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLED  202 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~-----------~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  202 (225)
                              .....+|+|+++...           ...   ...+.-+...|+|||.+++..+......++...++..|..
T Consensus        87 --------~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~  158 (181)
T PF01728_consen   87 --------ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSK  158 (181)
T ss_dssp             --------TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHH
T ss_pred             --------ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeE
Confidence                    023689999998732           111   2234556678999999888766654445888777777654


Q ss_pred             hc
Q 041459          203 IL  204 (225)
Q Consensus       203 ~~  204 (225)
                      +.
T Consensus       159 v~  160 (181)
T PF01728_consen  159 VK  160 (181)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.46  E-value=3.7e-06  Score=72.29  Aligned_cols=48  Identities=25%  Similarity=0.287  Sum_probs=41.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHh
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +.++..++|.+||.|..+..+++..  ..+|+|+|.++.+++.|++++..
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            3577899999999999999988753  57899999999999999987643

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.43  E-value=4.3e-06  Score=67.90  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM  125 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (225)
                      ..++++|... .++..|.|+|||.+.++..+. . ...|...|+...           +.    .  +..-+....|-  
T Consensus        61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~-----------n~----~--Vtacdia~vPL--  118 (219)
T PF05148_consen   61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAP-----------NP----R--VTACDIANVPL--  118 (219)
T ss_dssp             HHHHHHHCTS--TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------ST----T--EEES-TTS-S---
T ss_pred             HHHHHHHHhc-CCCEEEEECCCchHHHHHhcc-c-CceEEEeeccCC-----------CC----C--EEEecCccCcC--
Confidence            3445555443 235799999999999985533 2 245888887551           11    1  22222222221  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-h
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-L  200 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~  200 (225)
                                          +++.+|+++++..+  ..+.+++.++.|.||+||.+.+.++..  .+...+.+.+... |
T Consensus       119 --------------------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF  178 (219)
T PF05148_consen  119 --------------------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGF  178 (219)
T ss_dssp             ---------------------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTE
T ss_pred             --------------------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCC
Confidence                                57789999887554  568899999999999999999977643  4666677777765 6


Q ss_pred             hhhcccccC-CceEEEeeeeccc
Q 041459          201 EDILLSEMD-DWTCVSGTKKRAK  222 (225)
Q Consensus       201 ~~~~~~~~~-~w~~~~~~k~~~~  222 (225)
                      ........+ -+..+.++|.+.+
T Consensus       179 ~~~~~d~~n~~F~~f~F~K~~~~  201 (219)
T PF05148_consen  179 KLKSKDESNKHFVLFEFKKIRKK  201 (219)
T ss_dssp             EEEEEE--STTEEEEEEEE-SSS
T ss_pred             eEEecccCCCeEEEEEEEEcCcc
Confidence            655544444 3577888877643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.43  E-value=2.2e-06  Score=73.26  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             CcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++||-+|.|.|..+..+++. +..+++.||+++.+++.|++-+....  ....++.+...|+..+           |.. 
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-----------v~~-  145 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-----------LRD-  145 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-----------HHh-
Confidence            69999999999999998875 57899999999999999998876433  1124556666555322           111 


Q ss_pred             ccccccCCCCCCceeEEEeccchh--H-----HHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLN--P-----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~--~-----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ..++||+|+++..-.  +     -.++.+.+.+.|+++|+++..
T Consensus       146 ---------~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         146 ---------CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             ---------CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence                     233899999964322  2     367899999999999999986

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.42  E-value=6.5e-06  Score=67.26  Aligned_cols=115  Identities=17%  Similarity=0.227  Sum_probs=79.1

Q ss_pred             EEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459           62 FLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE  140 (225)
Q Consensus        62 vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (225)
                      |+|+||.-|.++++|.+.+. .+++++|+++..++.|++++...++. +++.+..+++-.                    
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~--------------------   59 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLE--------------------   59 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGG--------------------
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCccc--------------------
Confidence            68999999999999998764 67999999999999999999999887 578888776521                    


Q ss_pred             ccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hh
Q 041459          141 IRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LE  201 (225)
Q Consensus       141 ~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~  201 (225)
                        .+.+.+..|+|+...+- ..+.++++.....++....+++.  .......+++.+.+. |.
T Consensus        60 --~l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILq--P~~~~~~LR~~L~~~gf~  118 (205)
T PF04816_consen   60 --VLKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQ--PNTHAYELRRWLYENGFE  118 (205)
T ss_dssp             --G--GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEE--ESS-HHHHHHHHHHTTEE
T ss_pred             --ccCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEe--CCCChHHHHHHHHHCCCE
Confidence              12233437877765554 55678888888777777677774  235677777777765 54

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.40  E-value=5.1e-07  Score=71.87  Aligned_cols=96  Identities=22%  Similarity=0.355  Sum_probs=76.1

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      .+.+.|+|+|+|.++..+++. +.++++++.+|.-.+.|.+|+..++..+  +.+..+++...                 
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n--~evv~gDA~~y-----------------   92 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN--WEVVVGDARDY-----------------   92 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc--eEEEecccccc-----------------
Confidence            478999999999999998888 7889999999999999999998777654  66666655443                 


Q ss_pred             ccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEE
Q 041459          139 HEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                             .-...|+|+|.+.-     +.....+..+...|+.++.++-
T Consensus        93 -------~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076          93 -------DFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             -------cccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence                   33567999985432     2345678888889999999875

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.38  E-value=2.3e-05  Score=66.64  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             CCCcEEEEcccccHHHHHHH-hcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAI-KFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~-~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ...+|+||+||.|...+.+. ..+  ..++...|+++..++..++.+...++.+ .+++...++  +..   +....   
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~-i~~f~~~dA--fd~---~~l~~---  205 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED-IARFEQGDA--FDR---DSLAA---  205 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-ceEEEecCC--CCH---hHhhc---
Confidence            34699999999998887654 444  3789999999999999999999999883 345665553  311   00000   


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEec
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                 .....++++++..++-      ....+..+..++.|||+++.++
T Consensus       206 -----------l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  206 -----------LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             -----------cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence                       2445788888776643      4457889999999999999975

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=5.1e-06  Score=72.50  Aligned_cols=146  Identities=18%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             cCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHH-hcCCCeEEEE
Q 041459            9 TKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAI-KFGAAMSVGV   87 (225)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~v   87 (225)
                      |+.++.+|.-.... ....++.++|.|.|   .+......+..+....  ..+|+|.-+|||.-++-.+ +.+..+++.-
T Consensus         9 G~~~i~vP~~~~~~-~~~~pVFYNP~m~~---NRDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lN   82 (380)
T COG1867           9 GSAKIYVPDPYKGG-SKRAPVFYNPAMEF---NRDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLN   82 (380)
T ss_pred             CceEEEcCCCCCCC-CCCCcceeCchhhh---ccchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEc
Confidence            55566666643332 34458889999998   4555555555553221  7899999999999999755 4566589999


Q ss_pred             eCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHH
Q 041459           88 DIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLAD  167 (225)
Q Consensus        88 Di~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~  167 (225)
                      |+||.+.+.++.|+..|...  .......|++.+       +..              ....||+|=.+| +..+..+++
T Consensus        83 Disp~Avelik~Nv~~N~~~--~~~v~n~DAN~l-------m~~--------------~~~~fd~IDiDP-FGSPaPFlD  138 (380)
T COG1867          83 DISPKAVELIKENVRLNSGE--DAEVINKDANAL-------LHE--------------LHRAFDVIDIDP-FGSPAPFLD  138 (380)
T ss_pred             cCCHHHHHHHHHHHHhcCcc--cceeecchHHHH-------HHh--------------cCCCccEEecCC-CCCCchHHH
Confidence            99999999999999988322  223333333222       000              236799997765 666778888


Q ss_pred             HHHHhccCCeEEEEecc
Q 041459          168 HIVSYAKPGAVVGISGI  184 (225)
Q Consensus       168 ~~~~~LkpgG~l~~~~~  184 (225)
                      .+.+.++.||+++++..
T Consensus       139 aA~~s~~~~G~l~vTAT  155 (380)
T COG1867         139 AALRSVRRGGLLCVTAT  155 (380)
T ss_pred             HHHHHhhcCCEEEEEec
Confidence            99999999999999643

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.32  E-value=4e-06  Score=67.38  Aligned_cols=96  Identities=20%  Similarity=0.171  Sum_probs=73.4

Q ss_pred             cEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459           61 LFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH  139 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (225)
                      +++|+|+|.|.-++.++- .+..+++.+|.+..-+...+......++.+  +.+...+.+..                  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n--v~v~~~R~E~~------------------  110 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN--VEVINGRAEEP------------------  110 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS--EEEEES-HHHT------------------
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC--EEEEEeeeccc------------------
Confidence            899999999999988764 577889999999999999988888888875  55555443321                  


Q ss_pred             cccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          140 EIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       140 ~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                           ....+||+|++... ..+..+++.+..++++||.+++.
T Consensus       111 -----~~~~~fd~v~aRAv-~~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  111 -----EYRESFDVVTARAV-APLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             -----TTTT-EEEEEEESS-SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -----ccCCCccEEEeehh-cCHHHHHHHHHHhcCCCCEEEEE
Confidence                 05678999998653 35667788888999999998874

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.31  E-value=3e-06  Score=71.10  Aligned_cols=80  Identities=19%  Similarity=0.313  Sum_probs=61.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +++++.|||+|.|||.++..+.+.+. +|+|+|++|.|+...+++....... .+.++..+|.-..              
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~--------------  119 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKT--------------  119 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccC--------------
Confidence            67889999999999999999999864 5999999999999998887644433 2344444333221              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                                +...||++++|.|+..
T Consensus       120 ----------d~P~fd~cVsNlPyqI  135 (315)
T KOG0820|consen  120 ----------DLPRFDGCVSNLPYQI  135 (315)
T ss_pred             ----------CCcccceeeccCCccc
Confidence                      3467999999998754

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.4e-05  Score=67.28  Aligned_cols=93  Identities=17%  Similarity=0.138  Sum_probs=68.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.+++.|||||+|.|.++..+++.+.. ++++|+++.++...++...    ..+++.+..+|.-....            
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~------------   90 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDF------------   90 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcc------------
Confidence            446789999999999999999998655 9999999999999887754    11346666666544311            


Q ss_pred             cccccccCCCCCC-ceeEEEeccchhHHHHHHHHHHHhccC
Q 041459          136 LSSHEIRGISETE-KYDVVIANILLNPLLQLADHIVSYAKP  175 (225)
Q Consensus       136 ~~~~~~~~~~~~~-~~DvIi~~~~~~~~~~~l~~~~~~Lkp  175 (225)
                                +.. .++.|++|.||+.-..++.++...-..
T Consensus        91 ----------~~l~~~~~vVaNlPY~Isspii~kll~~~~~  121 (259)
T COG0030          91 ----------PSLAQPYKVVANLPYNISSPILFKLLEEKFI  121 (259)
T ss_pred             ----------hhhcCCCEEEEcCCCcccHHHHHHHHhccCc
Confidence                      111 679999999998777776666555333

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=3.5e-06  Score=67.53  Aligned_cols=100  Identities=28%  Similarity=0.321  Sum_probs=71.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .|++|||+|+|+|..++.+++.|+.++++.|+.|-..+.++.|++.|++.   +.+...+.-.                 
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~---i~~~~~d~~g-----------------  138 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS---ILFTHADLIG-----------------  138 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce---eEEeeccccC-----------------
Confidence            58999999999999999999999999999999999999999999998865   2222221111                 


Q ss_pred             cccccCCCCCCceeEEEeccch-hH--HHHHHHHHHHhccCCeE-EEEeccCC
Q 041459          138 SHEIRGISETEKYDVVIANILL-NP--LLQLADHIVSYAKPGAV-VGISGILS  186 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~-~~--~~~~l~~~~~~LkpgG~-l~~~~~~~  186 (225)
                              ++..+|+++..-.+ ++  ...++. +...|+..|. +++.+..+
T Consensus       139 --------~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         139 --------SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             --------CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence                    46679999885443 22  234455 5555555554 55545544

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.25  E-value=9.6e-06  Score=63.49  Aligned_cols=106  Identities=14%  Similarity=0.169  Sum_probs=73.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ...|.-|||+|.|||.++..+.+.+  ...++++|.|+.......+......       +..+++-.+.    .-+..  
T Consensus        46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-------ii~gda~~l~----~~l~e--  112 (194)
T COG3963          46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-------IINGDAFDLR----TTLGE--  112 (194)
T ss_pred             cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------ccccchhhHH----HHHhh--
Confidence            4468899999999999999988764  4679999999998877765543221       2222221110    00111  


Q ss_pred             cccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                 .....||.|+|..|+     +-..++++.+...|..||.++-...+
T Consensus       113 -----------~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         113 -----------HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             -----------cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence                       146679999996654     44567899999999999999875444

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.24  E-value=8.5e-06  Score=69.85  Aligned_cols=139  Identities=17%  Similarity=0.175  Sum_probs=91.5

Q ss_pred             eecCCCCchHHHHHHHHH--hhccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcc
Q 041459           36 AFGTGEHATTKLCLLLLQ--SLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM  111 (225)
Q Consensus        36 ~f~~~~~~~~~~~~~~L~--~~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~  111 (225)
                      .|..|....+.....+..  -.+.++..|||++++.|+-+.+++..  ....+++.|+++.-+...+.++...|+.+  +
T Consensus        61 ~~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~--v  138 (283)
T PF01189_consen   61 EFKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN--V  138 (283)
T ss_dssp             HHHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS--E
T ss_pred             hhhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce--E
Confidence            344455544444333322  23567899999999999999888764  36789999999999999999999888764  3


Q ss_pred             eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------------------------HHHHHH
Q 041459          112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLA  166 (225)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l  166 (225)
                      .....+....       ....             ....||.|+.+.|..                         ...+++
T Consensus       139 ~~~~~D~~~~-------~~~~-------------~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL  198 (283)
T PF01189_consen  139 IVINADARKL-------DPKK-------------PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREIL  198 (283)
T ss_dssp             EEEESHHHHH-------HHHH-------------HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHH
T ss_pred             EEEeeccccc-------cccc-------------cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHH
Confidence            3333222111       0000             234699999987721                         034689


Q ss_pred             HHHHHhc----cCCeEEEEecc--CCCcHHHHHHHH
Q 041459          167 DHIVSYA----KPGAVVGISGI--LSEQLPHIINRY  196 (225)
Q Consensus       167 ~~~~~~L----kpgG~l~~~~~--~~~~~~~~~~~~  196 (225)
                      ..+.+++    ||||+++.++-  ..++.++..+.+
T Consensus       199 ~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~f  234 (283)
T PF01189_consen  199 DNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKF  234 (283)
T ss_dssp             HHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHH
T ss_pred             HHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHH
Confidence            9999999    99999887533  234444444433

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.21  E-value=6e-05  Score=61.61  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=95.4

Q ss_pred             HHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +..+..+++.+..++|+||--++++.++.+. ....++++|+++..++.|.+++..+++. +++....+++-        
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl--------   77 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGL--------   77 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCc--------
Confidence            3445566778888999999999999998875 6788999999999999999999999987 56777766652        


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchh-HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                    ..++.+..+|+++...+-. -+.+++++-.+-|+.--.+++.  .......+++.+...
T Consensus        78 --------------~~l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ--Pn~~~~~LR~~L~~~  134 (226)
T COG2384          78 --------------AVLELEDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ--PNIHTYELREWLSAN  134 (226)
T ss_pred             --------------cccCccCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC--CCCCHHHHHHHHHhC
Confidence                          1233566799888876654 4677888888887755556663  445667777777765

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.17  E-value=4.6e-05  Score=66.33  Aligned_cols=125  Identities=10%  Similarity=0.055  Sum_probs=73.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK----F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~----~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      +.++..++|+|||+|.-+..+.+    . ....|+++|+|..+|+.+..++....+..-.+....++-...        .
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~--------l  145 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG--------L  145 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH--------H
Confidence            44677899999999977655432    1 245799999999999999988873343321122222221110        0


Q ss_pred             ccccccccccccCCCCCCceeEEEe------ccchhHHHHHHHHHHH-hccCCeEEEEeccCCCcHHHHHHHH
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIA------NILLNPLLQLADHIVS-YAKPGAVVGISGILSEQLPHIINRY  196 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~------~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~~~~~~~~~~~~~  196 (225)
                      .++.        .-.......+++.      |+....-..++..+.+ .|+|||.+++.-....+...+...|
T Consensus       146 ~~l~--------~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY  210 (319)
T TIGR03439       146 AWLK--------RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY  210 (319)
T ss_pred             hhcc--------cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence            0000        0001122355544      3444455678899999 9999999988644444444444444

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.12  E-value=4.6e-05  Score=67.53  Aligned_cols=119  Identities=17%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+++.+|.-+.++|.  .....|+|.|.+..-+...+.|+...|+.+  ..+...++..++..         
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n--tiv~n~D~~ef~~~---------  307 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN--TIVSNYDGREFPEK---------  307 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc--eEEEccCccccccc---------
Confidence            56899999999999977777654  345679999999999999999999999875  33445555444210         


Q ss_pred             cccccccccCCCCCCceeEEEeccch-------------------------hHHHHHHHHHHHhccCCeEEEEecc--CC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGISGI--LS  186 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~--~~  186 (225)
                                ..+. +||-|..+.|.                         +-.++++..+.+++++||+++.|+-  ..
T Consensus       308 ----------~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~  376 (460)
T KOG1122|consen  308 ----------EFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV  376 (460)
T ss_pred             ----------ccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence                      0123 79999886552                         1135789999999999999998632  33


Q ss_pred             CcHHHHHHHH
Q 041459          187 EQLPHIINRY  196 (225)
Q Consensus       187 ~~~~~~~~~~  196 (225)
                      ++.+...+..
T Consensus       377 ~ENE~vV~ya  386 (460)
T KOG1122|consen  377 EENEAVVDYA  386 (460)
T ss_pred             hhhHHHHHHH
Confidence            4444444443

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.11  E-value=4.6e-05  Score=62.28  Aligned_cols=108  Identities=23%  Similarity=0.281  Sum_probs=58.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHH-------hcCCCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +.++..++|+|||.|...+.++ ..+..+.+|+|+.+...+.|+....       ..+....++.+.  .++.+..+...
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~--~gdfl~~~~~~  117 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI--HGDFLDPDFVK  117 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE--CS-TTTHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee--ccCccccHhHh
Confidence            5578899999999999888755 4578889999999998888765443       233333333333  44333111000


Q ss_pred             cccccccccccccccCCCCCCceeEEEecc-chh-HHHHHHHHHHHhccCCeEEEEe
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANI-LLN-PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~-~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                         .              .-...|+|++|. .++ .+...+......||+|..++-+
T Consensus       118 ---~--------------~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  118 ---D--------------IWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             ---H--------------HGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             ---h--------------hhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence               0              013469999964 443 3444566777789999887754

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK04148 hypothetical protein; Provisional

Probab=98.10  E-value=5e-05  Score=57.76  Aligned_cols=97  Identities=10%  Similarity=0.055  Sum_probs=60.8

Q ss_pred             CCCcEEEEcccccH-HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGI-LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~-~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+++|+|||+|. ++..+++.|. .|+++|+++.+++.++.+    +.     .....|.-...              
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~~-----~~v~dDlf~p~--------------   71 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----GL-----NAFVDDLFNPN--------------   71 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----CC-----eEEECcCCCCC--------------
Confidence            45789999999996 8888888764 699999999998888765    21     12222221110              


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                             ..--..+|+|.+..|...+...+-++.+.+  |.-+++.....+
T Consensus        72 -------~~~y~~a~liysirpp~el~~~~~~la~~~--~~~~~i~~l~~e  113 (134)
T PRK04148         72 -------LEIYKNAKLIYSIRPPRDLQPFILELAKKI--NVPLIIKPLSGE  113 (134)
T ss_pred             -------HHHHhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence                   002356899999655554554444555443  444555444443

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.10  E-value=1.4e-05  Score=65.56  Aligned_cols=115  Identities=18%  Similarity=0.178  Sum_probs=82.9

Q ss_pred             CCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +++++|+|+|.|.-++.++ ..+..+++-+|....-+...+......+++|  +++.....+.+.               
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n--v~i~~~RaE~~~---------------  130 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN--VEIVHGRAEEFG---------------  130 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC--eEEehhhHhhcc---------------
Confidence            5899999999999999877 5666779999999988888888888888765  667666665552               


Q ss_pred             cccccCCCCCCc-eeEEEeccchhHHHHHHHHHHHhccCCeEEEEe--ccCCCcHHHHHHHHHhh
Q 041459          138 SHEIRGISETEK-YDVVIANILLNPLLQLADHIVSYAKPGAVVGIS--GILSEQLPHIINRYSEF  199 (225)
Q Consensus       138 ~~~~~~~~~~~~-~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~  199 (225)
                              +... ||+|++.. +..+..+.+-+..++|+||.+++-  .-..++..+..+.....
T Consensus       131 --------~~~~~~D~vtsRA-va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~  186 (215)
T COG0357         131 --------QEKKQYDVVTSRA-VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPL  186 (215)
T ss_pred             --------cccccCcEEEeeh-ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhh
Confidence                    2233 99998744 445667777888999998886531  22344555555555443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.08  E-value=8.6e-06  Score=73.70  Aligned_cols=124  Identities=17%  Similarity=0.201  Sum_probs=73.4

Q ss_pred             ceecCCCCchHHHHHHHHHhhccCC--CcEEEEcccccHHHHHHHhcCCCeE--EEEeCCHHHHHHHHHHHHhcCCCCCc
Q 041459           35 LAFGTGEHATTKLCLLLLQSLIKGG--ELFLDYGTGSGILGIAAIKFGAAMS--VGVDIDPQAIKSAHQNAALNNIGPKK  110 (225)
Q Consensus        35 ~~f~~~~~~~~~~~~~~L~~~~~~~--~~vlDiGcGtG~~~~~l~~~~~~~v--~~vDi~~~~l~~a~~~~~~~~~~~~~  110 (225)
                      -.|..|-..+...+.+++......|  -++||+|||+|+++.+|...+...+  ..-|..+..++.|.+    .|+..  
T Consensus        92 t~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvpa--  165 (506)
T PF03141_consen   92 TMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVPA--  165 (506)
T ss_pred             ccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcch--
Confidence            4555555555555555554322233  2679999999999999888764322  112334444444432    23321  


Q ss_pred             ceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH----HHHHHHHHHhccCCeEEEEeccCC
Q 041459          111 MKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL----LQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                       .+-......+++                      +.+.||+|.|...+.+.    --++-++.|+|+|||+++++....
T Consensus       166 -~~~~~~s~rLPf----------------------p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  166 -MIGVLGSQRLPF----------------------PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             -hhhhhccccccC----------------------CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence             011111122222                      68899999996654321    135778899999999999987754


Q ss_pred             C
Q 041459          187 E  187 (225)
Q Consensus       187 ~  187 (225)
                      .
T Consensus       223 ~  223 (506)
T PF03141_consen  223 Y  223 (506)
T ss_pred             c
Confidence            3

; GO: 0008168 methyltransferase activity

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.07  E-value=3.4e-05  Score=67.35  Aligned_cols=173  Identities=17%  Similarity=0.255  Sum_probs=100.4

Q ss_pred             eeEEecccceecCCCC-chHH-HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHh
Q 041459           27 TNIILNPGLAFGTGEH-ATTK-LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~-~~~~-~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      ..+-+|-++.|+|... -+.. ++.-.+ +.++...++|-+|.|.|.....+.+++ ..+++-+|.+|.|++.++++...
T Consensus       257 ~rLYldG~LQfsTrDe~RYhEsLV~pal-s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl  335 (508)
T COG4262         257 LRLYLDGGLQFSTRDEYRYHESLVYPAL-SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL  335 (508)
T ss_pred             eEEEEcCceeeeechhhhhhheeeeccc-ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence            3444566677766322 1111 111111 223445789999999999999999987 78999999999999999966543


Q ss_pred             cCCCC---CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHh
Q 041459          104 NNIGP---KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSY  172 (225)
Q Consensus       104 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~  172 (225)
                      ..++.   ...++.....+         .+.|+..          ..+.||+||.+.+-..        -.++-.-+.+.
T Consensus       336 r~~N~~sf~dpRv~Vv~dD---------Af~wlr~----------a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~  396 (508)
T COG4262         336 RALNQGSFSDPRVTVVNDD---------AFQWLRT----------AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRH  396 (508)
T ss_pred             hhhccCCccCCeeEEEecc---------HHHHHHh----------hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHh
Confidence            32221   22333333222         2223211          3458999999765321        23455667789


Q ss_pred             ccCCeEEEEeccC----CCcHHHHHHHHHhh-hh----hhcccccCCceEEEeeee
Q 041459          173 AKPGAVVGISGIL----SEQLPHIINRYSEF-LE----DILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       173 LkpgG~l~~~~~~----~~~~~~~~~~~~~~-~~----~~~~~~~~~w~~~~~~k~  219 (225)
                      |+++|.+++..-.    .+-...+...++.. +.    .+-+-+-|+|--....+-
T Consensus       397 l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~  452 (508)
T COG4262         397 LAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPG  452 (508)
T ss_pred             cCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccc
Confidence            9999999984221    12222233333332 21    333456788865544443

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.07  E-value=6.9e-05  Score=62.66  Aligned_cols=120  Identities=16%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ....|.|+|||-+.++.    .-...|+..|+.+              .+ +.+...  +....|.              
T Consensus       180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~-~~V~~c--Dm~~vPl--------------  224 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VN-ERVIAC--DMRNVPL--------------  224 (325)
T ss_pred             CceEEEecccchhhhhh----ccccceeeeeeec--------------CC-Cceeec--cccCCcC--------------
Confidence            35689999999998776    2234578888643              11 112111  1111211              


Q ss_pred             cccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-hhhhcccccCC-c
Q 041459          138 SHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LEDILLSEMDD-W  211 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~-w  211 (225)
                              ++++.|+++++..+  ..+.+++.++++.||+||.+++.++..  .+...+.+.+... |+.......+. +
T Consensus       225 --------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F  296 (325)
T KOG3045|consen  225 --------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKYF  296 (325)
T ss_pred             --------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcceE
Confidence                    57889998886543  568899999999999999999987753  3445566666655 65444443433 5


Q ss_pred             eEEEeeeec
Q 041459          212 TCVSGTKKR  220 (225)
Q Consensus       212 ~~~~~~k~~  220 (225)
                      ..+.+.|.+
T Consensus       297 ~lfefkK~~  305 (325)
T KOG3045|consen  297 TLFEFKKTP  305 (325)
T ss_pred             EEEEEecCC
Confidence            677777765

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=9.8e-05  Score=62.14  Aligned_cols=103  Identities=18%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|+|-|+|+|.++-++++  .+..+++..|+-..-.+.|.+-.+.+++. +.+.+...|.-...+.       . 
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF~-------~-  173 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGFL-------I-  173 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCcc-------c-
Confidence            56899999999999999999887  36788999999999999999999999977 5666665543221110       0 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCe-EEEE
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGA-VVGI  181 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG-~l~~  181 (225)
                                  ....+|.|+.+.|-.+  ..+..+++.||.+| ++|.
T Consensus       174 ------------ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  174 ------------KSLKADAVFLDLPAPW--EAIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             ------------cccccceEEEcCCChh--hhhhhhHHHhhhcCceEEe
Confidence                        3678999998876553  34566667888876 4443

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=5.9e-05  Score=60.16  Aligned_cols=122  Identities=11%  Similarity=0.092  Sum_probs=78.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  132 (225)
                      ++++.+|||+||.+|..+..+.+  ++...+.|+|+-+-        .+-.|..     ...+ +....  .....+++.
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~Ga~-----~i~~~dvtdp--~~~~ki~e~  131 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEGAT-----IIQGNDVTDP--ETYRKIFEA  131 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCCcc-----cccccccCCH--HHHHHHHHh
Confidence            56899999999999999998775  47788999998541        1122221     1111 11111  011111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccch--------hHHH------HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILL--------NPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~--------~~~~------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                                  .+....|+|++++..        ++.+      ..+--....++|+|.+++..+..++...+.+.+..
T Consensus       132 ------------lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~  199 (232)
T KOG4589|consen  132 ------------LPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA  199 (232)
T ss_pred             ------------CCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence                        166789999997653        2221      22344557789999999988888899999999988


Q ss_pred             hhhhhc
Q 041459          199 FLEDIL  204 (225)
Q Consensus       199 ~~~~~~  204 (225)
                      .|..+.
T Consensus       200 ~f~~Vk  205 (232)
T KOG4589|consen  200 VFTNVK  205 (232)
T ss_pred             HhhhcE
Confidence            775444

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.01  E-value=0.00014  Score=62.08  Aligned_cols=116  Identities=19%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+.+|||+|||+|+.+..+...  ...+++++|.|+.|++.++..+.... .........    .+              
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-~~~~~~~~~----~~--------------   93 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-NNRNAEWRR----VL--------------   93 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-ccccchhhh----hh--------------
Confidence            4679999999999766555442  35679999999999999988654322 111000000    00              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                           .....+....|+|++...+..     ...+++.+.+.+++  .+++.+.++..........++.
T Consensus        94 -----~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~  155 (274)
T PF09243_consen   94 -----YRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQ  155 (274)
T ss_pred             -----hcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHH
Confidence                 000002233499999766533     34567777776655  8888888876666655555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.94  E-value=0.0002  Score=60.66  Aligned_cols=95  Identities=18%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++..|+|+|+|+|.++..+++.+ .+++++|+++...+..++...    ...++.+...|...+..  ..   .     
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~--~~---~-----   93 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDL--YD---L-----   93 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCG--GG---H-----
T ss_pred             CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh----hcccceeeecchhcccc--HH---h-----
Confidence            368999999999999999999887 889999999999988887654    22456677666554411  00   0     


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKP  175 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkp  175 (225)
                               .......|++|.|+..-..++.++...-+.
T Consensus        94 ---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~  123 (262)
T PF00398_consen   94 ---------LKNQPLLVVGNLPYNISSPILRKLLELYRF  123 (262)
T ss_dssp             ---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred             ---------hcCCceEEEEEecccchHHHHHHHhhcccc
Confidence                     123567899999997777777777764444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.93  E-value=5.3e-05  Score=63.87  Aligned_cols=126  Identities=19%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC---cceE-EEecCCCCCc-ccccccc--
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK---KMKL-HLVPDRTFPA-SMNERVD--  130 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~~~~~~~--  130 (225)
                      +|.++||+|||+-.+....+.....+|+..|..+...+..++=+...+ ..+   .+.. ....+..-.+ +..+.++  
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~-a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEG-AFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-T-S--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCC-CCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            467999999999777655555667889999999999987776654321 101   0000 0111111000 0001111  


Q ss_pred             --ccc--cccccccccC-CCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEecc
Q 041459          131 --GIV--EDLSSHEIRG-ISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       131 --~~~--~~~~~~~~~~-~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                        ..+  +=...+-+.. .....++|+|++.+.++       .+...+.++.++|||||.+++.+.
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence              111  0000000111 11233599999977764       477889999999999999998544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.93  E-value=0.00027  Score=61.02  Aligned_cols=48  Identities=31%  Similarity=0.423  Sum_probs=41.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      ++++..++|.-+|.|..+..+++. +..+++|+|.++.+++.|++++..
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            457789999999999999987764 458899999999999999988753

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.89  E-value=3.8e-05  Score=66.50  Aligned_cols=105  Identities=20%  Similarity=0.283  Sum_probs=75.2

Q ss_pred             hccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHH-------HHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           55 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIK-------SAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ++++|+.|.|-..|||.+.+.+++.|+- ++|.||+-.++.       ..+.|.++-+...-.+.+...|....+     
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa~-viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~-----  278 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGAY-VIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP-----  278 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcce-eeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc-----
Confidence            3778999999999999999999999765 999999988877       235555555544322333333332221     


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH------------------------------------HHHHHHHHHH
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------------------------------LLQLADHIVS  171 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------------------------------~~~~l~~~~~  171 (225)
                                      ++....||.|+|+||+.-                                    +-+++.-.++
T Consensus       279 ----------------~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~  342 (421)
T KOG2671|consen  279 ----------------LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSR  342 (421)
T ss_pred             ----------------hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHh
Confidence                            124668999999999632                                    1356778889


Q ss_pred             hccCCeEEEE
Q 041459          172 YAKPGAVVGI  181 (225)
Q Consensus       172 ~LkpgG~l~~  181 (225)
                      .|..||++++
T Consensus       343 ~L~~ggrlv~  352 (421)
T KOG2671|consen  343 RLVDGGRLVF  352 (421)
T ss_pred             hhhcCceEEE
Confidence            9999999887

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.76  E-value=0.00038  Score=64.17  Aligned_cols=123  Identities=24%  Similarity=0.311  Sum_probs=84.4

Q ss_pred             CCCchHHHHHHHHHhhcc--CCCcEEEEcccccHHHHHHHhc----C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459           40 GEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF----G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK  112 (225)
Q Consensus        40 ~~~~~~~~~~~~L~~~~~--~~~~vlDiGcGtG~~~~~l~~~----~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~  112 (225)
                      |++-|.+.+.+++...+.  +..+|+|..||+|.+.+.+.+.    . ...++|.|+++.....|+.|+..+++.. .+.
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~  244 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DAN  244 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-ccc
Confidence            677788888887776644  5679999999999887765542    1 2569999999999999999999999863 222


Q ss_pred             EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----------------------------HHH
Q 041459          113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----------------------------LLQ  164 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------------------------~~~  164 (225)
                      ....+....+.  -.               .-....+||.|++|||+..                            ...
T Consensus       245 i~~~dtl~~~~--~~---------------~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  307 (489)
T COG0286         245 IRHGDTLSNPK--HD---------------DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA  307 (489)
T ss_pred             ccccccccCCc--cc---------------ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence            22222111100  00               0003467999999999740                            124


Q ss_pred             HHHHHHHhccCCeEEE
Q 041459          165 LADHIVSYAKPGAVVG  180 (225)
Q Consensus       165 ~l~~~~~~LkpgG~l~  180 (225)
                      .+.++...|+|||...
T Consensus       308 f~~h~~~~l~~~g~aa  323 (489)
T COG0286         308 FLQHILYKLKPGGRAA  323 (489)
T ss_pred             HHHHHHHhcCCCceEE
Confidence            5889999999977433

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.72  E-value=0.0001  Score=56.04  Aligned_cols=47  Identities=23%  Similarity=0.330  Sum_probs=41.3

Q ss_pred             cEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459           61 LFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIG  107 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~  107 (225)
                      +++|+|||.|.++..+++.+. .+++++|.++.+.+.+++++..+++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~   48 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP   48 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence            489999999999998887643 48999999999999999999888765

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.70  E-value=7.6e-05  Score=60.99  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             EEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 041459           29 IILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP  108 (225)
Q Consensus        29 ~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~  108 (225)
                      +-++-...|+....+....+........ ....|+|..||.|+.++..+..+.. |+++|++|.-|..|++|++.-|+..
T Consensus        66 i~md~e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI~~  143 (263)
T KOG2730|consen   66 IYMDREGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGVPD  143 (263)
T ss_pred             eeecccceEEeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecCCc
Confidence            4444455554433333333222222222 4568999999999888877766544 8999999999999999999999984


Q ss_pred             CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch
Q 041459          109 KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL  159 (225)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~  159 (225)
                       ++.+.+++.-       +....+ ++          ....+|+++..+|.
T Consensus       144 -rItFI~GD~l-------d~~~~l-q~----------~K~~~~~vf~sppw  175 (263)
T KOG2730|consen  144 -RITFICGDFL-------DLASKL-KA----------DKIKYDCVFLSPPW  175 (263)
T ss_pred             -eeEEEechHH-------HHHHHH-hh----------hhheeeeeecCCCC
Confidence             7777665431       222222 11          23348899988774

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.69  E-value=0.0012  Score=48.56  Aligned_cols=99  Identities=27%  Similarity=0.469  Sum_probs=61.9

Q ss_pred             EEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC--CCccccccccccccccc
Q 041459           62 FLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT--FPASMNERVDGIVEDLS  137 (225)
Q Consensus        62 vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  137 (225)
                      ++|+|||+|... .+.....  ..++++|+++.++..++.........  .+.....+...  .+.              
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------  114 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG--LVDFVVADALGGVLPF--------------  114 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC--ceEEEEeccccCCCCC--------------
Confidence            999999999876 4333322  36899999999999855444321111  02333333221  110              


Q ss_pred             cccccCCCCC-CceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEeccC
Q 041459          138 SHEIRGISET-EKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       138 ~~~~~~~~~~-~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                              .. ..||++.+....+.  ....+..+.+.++|+|.+++....
T Consensus       115 --------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         115 --------EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             --------CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence                    22 47999943333322  467889999999999999886554

>PRK10742 putative methyltransferase; Provisional

Probab=97.69  E-value=0.00011  Score=61.45  Aligned_cols=48  Identities=19%  Similarity=0.160  Sum_probs=42.9

Q ss_pred             ccCCC--cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           56 IKGGE--LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        56 ~~~~~--~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      +++|.  +|||+.+|+|..++.++..|+. |+++|.++.+....+.++...
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra  133 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARG  133 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHh
Confidence            35666  8999999999999999999887 999999999999999988763

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.69  E-value=0.0005  Score=58.57  Aligned_cols=100  Identities=25%  Similarity=0.324  Sum_probs=62.5

Q ss_pred             CcEEEEccccc-HHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHH-hcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           60 ELFLDYGTGSG-ILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAA-LNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        60 ~~vlDiGcGtG-~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+|+=+|||+= ..++.+++. + ...++++|+++.+.+.+++-+. ..++. .++.+...+....+.            
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~------------  188 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTY------------  188 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-G------------
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhcccc------------
Confidence            59999999986 445566653 3 4568999999999999998777 44554 556666655433211            


Q ss_pred             cccccccCCCCCCceeEEEeccchh----HHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN----PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~----~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                ....||+|+......    +-.+++.++.+.++||+.+++.
T Consensus       189 ----------dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  189 ----------DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             ----------G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             ----------ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence                      346799999877665    6778999999999999999884

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.68  E-value=0.0011  Score=54.28  Aligned_cols=104  Identities=16%  Similarity=0.239  Sum_probs=73.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..+|.+||++|-|-|.+.-.+-+.+..+=+.+|-.|.+++.-+...-...   +++....  +..     .+.+..+   
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek---~nViil~--g~W-----eDvl~~L---  165 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK---ENVIILE--GRW-----EDVLNTL---  165 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc---cceEEEe--cch-----Hhhhccc---
Confidence            45799999999999999888888777667899999999977765532211   2232222  211     1222222   


Q ss_pred             cccccccCCCCCCceeEEEecc---chhHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANI---LLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~---~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                +++.||-|+-+.   .++....+.+.+.++|||+|++-+.
T Consensus       166 ----------~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  166 ----------PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             ----------cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence                      667799998753   3455677889999999999998774

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.66  E-value=0.0012  Score=50.54  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--
Q 041459           83 MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--  160 (225)
Q Consensus        83 ~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--  160 (225)
                      +|+|.||.+++++.+++++...++. +++.+....-+.+        ..+           + +.+++|.++.|..+-  
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l--------~~~-----------i-~~~~v~~~iFNLGYLPg   59 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENL--------DEY-----------I-PEGPVDAAIFNLGYLPG   59 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGG--------GGT--------------S--EEEEEEEESB-CT
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHH--------Hhh-----------C-ccCCcCEEEEECCcCCC
Confidence            5899999999999999999988876 3566665443222        111           1 235899999987652  


Q ss_pred             ----------HHHHHHHHHHHhccCCeEEEEeccCCCcH
Q 041459          161 ----------PLLQLADHIVSYAKPGAVVGISGILSEQL  189 (225)
Q Consensus       161 ----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  189 (225)
                                .-...++.+.++|+|||.+.+.....+..
T Consensus        60 gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~g   98 (140)
T PF06962_consen   60 GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPG   98 (140)
T ss_dssp             S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCC
Confidence                      13467899999999999999987765443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.66  E-value=5.6e-05  Score=54.78  Aligned_cols=99  Identities=15%  Similarity=0.171  Sum_probs=40.7

Q ss_pred             EEEcccccHHHHHHHhc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           63 LDYGTGSGILGIAAIKF----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        63 lDiGcGtG~~~~~l~~~----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      ||+|+..|..+..+++.    +..+++++|..+. .+.+++.++..++. ..+.+...+..       +.+..+      
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~-------~~l~~~------   65 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSP-------DFLPSL------   65 (106)
T ss_dssp             --------------------------EEEESS-------------GGG--BTEEEEES-TH-------HHHHHH------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcH-------HHHHHc------
Confidence            68999999888776642    2247999999995 33344444434443 34555544331       111122      


Q ss_pred             ccccCCCCCCceeEEEeccc--hhHHHHHHHHHHHhccCCeEEEEec
Q 041459          139 HEIRGISETEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                             ...++|+++.+..  +......++.+.+.|+|||++++.+
T Consensus        66 -------~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   66 -------PDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -------HH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             -------CCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence                   2468999999764  4556677889999999999999864

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.64  E-value=0.00023  Score=54.60  Aligned_cols=49  Identities=24%  Similarity=0.295  Sum_probs=42.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-----cCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-----FGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-----~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      .+...|+|+|||.|+++..++.     .+..+++++|.++..++.+++.....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            3578999999999999999888     566789999999999999988887665

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.64  E-value=0.0003  Score=61.19  Aligned_cols=93  Identities=16%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSH  139 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (225)
                      ...+|+|.|.|.++-.+.. ...++-+++++...+..++.... .++.     -..  ++-+.                 
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV~-----~v~--gdmfq-----------------  232 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PGVE-----HVA--GDMFQ-----------------  232 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CCcc-----eec--ccccc-----------------
Confidence            6889999999999988766 34558899999988888877664 4432     222  21110                 


Q ss_pred             cccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          140 EIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       140 ~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                            ...+-|+|++.+.+++     ...+++++++.|+|||.+++.+.
T Consensus       233 ------~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  233 ------DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ------cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence                  1233569999887765     56799999999999999998766

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.59  E-value=0.00043  Score=56.04  Aligned_cols=47  Identities=19%  Similarity=0.247  Sum_probs=40.4

Q ss_pred             CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ...+.|||||-|.+.+.++- .+..-++|.||...+.+..+.++...+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            35689999999999999885 577889999999999999988887555

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.58  E-value=0.00016  Score=59.56  Aligned_cols=88  Identities=23%  Similarity=0.307  Sum_probs=57.7

Q ss_pred             CCCcEEEEcccccHH-HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGIL-GIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~-~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.++||+|.|.-.+ .+.-.+....+++|.|+++.+++.|+.++..|.--...+++.......      ..+.+.+   
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~------~if~gii---  148 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD------AIFNGII---  148 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc------ccccccc---
Confidence            456889999887644 332223334569999999999999999999884222455555433211      1111111   


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL  162 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~  162 (225)
                              -..++||++.||||++..
T Consensus       149 --------g~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         149 --------GKNERYDATLCNPPFHDS  166 (292)
T ss_pred             --------cccceeeeEecCCCcchh
Confidence                    136789999999999764

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.57  E-value=0.00067  Score=59.30  Aligned_cols=87  Identities=16%  Similarity=0.258  Sum_probs=56.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+|++++|+||++|.++..+.+.|. +|+|||..+ +   +. .+...    .++.....++-.+.              
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l---~~-~L~~~----~~V~h~~~d~fr~~--------------  265 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-M---AQ-SLMDT----GQVEHLRADGFKFR--------------  265 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-c---CH-hhhCC----CCEEEEeccCcccC--------------
Confidence            4789999999999999999999987 799999655 2   11 11111    22333333321110              


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG  176 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg  176 (225)
                              ...+.+|+++|+..-.+ ..+++-+.++|..|
T Consensus       266 --------p~~~~vDwvVcDmve~P-~rva~lm~~Wl~~g  296 (357)
T PRK11760        266 --------PPRKNVDWLVCDMVEKP-ARVAELMAQWLVNG  296 (357)
T ss_pred             --------CCCCCCCEEEEecccCH-HHHHHHHHHHHhcC
Confidence                    02567999999876544 35556677777666

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.55  E-value=0.0023  Score=52.62  Aligned_cols=104  Identities=20%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+||-+|+++|+..-+++..  +...|+|||+++...+..-..+....    ++-....|+....     .-..  
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----NIiPIl~DAr~P~-----~Y~~--  139 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----NIIPILEDARHPE-----KYRM--  139 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----TEEEEES-TTSGG-----GGTT--
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----ceeeeeccCCChH-----Hhhc--
Confidence            568899999999999999888873  36789999999977665543333221    2333444443321     0000  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (225)
                                  .-+.+|+|+++....... -++.++...||+||.++++
T Consensus       140 ------------lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  140 ------------LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             ------------TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence                        235899999987765544 4577788899999998874

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.45  E-value=0.00067  Score=58.55  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             CcceeEEecccceecC--CCCchHHHHHHHHHhhccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459           24 VQATNIILNPGLAFGT--GEHATTKLCLLLLQSLIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~--~~~~~~~~~~~~L~~~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      .+++++.++...+|.-  -..|........-...++.|.+||=+|+|+ |..+...++ .|+++|+.+|+++.-++.|++
T Consensus       133 ~~dfc~KLPd~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  133 PADFCYKLPDNVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             chHheeeCCCCCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            4456666666654422  222322222222223467899999999998 777776555 799999999999999999987


Q ss_pred             HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEE
Q 041459          100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV  179 (225)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l  179 (225)
                       +   |.+.    +........+    +.+.+.++..        -....+|+.|.+.-.+   ..++.+...++.||++
T Consensus       213 -~---Ga~~----~~~~~~~~~~----~~~~~~v~~~--------~g~~~~d~~~dCsG~~---~~~~aai~a~r~gGt~  269 (354)
T KOG0024|consen  213 -F---GATV----TDPSSHKSSP----QELAELVEKA--------LGKKQPDVTFDCSGAE---VTIRAAIKATRSGGTV  269 (354)
T ss_pred             -h---CCeE----EeeccccccH----HHHHHHHHhh--------ccccCCCeEEEccCch---HHHHHHHHHhccCCEE
Confidence             3   3221    1111110000    2222222211        1334589888755443   3455667899999998


Q ss_pred             EEeccCC
Q 041459          180 GISGILS  186 (225)
Q Consensus       180 ~~~~~~~  186 (225)
                      ++.+++.
T Consensus       270 vlvg~g~  276 (354)
T KOG0024|consen  270 VLVGMGA  276 (354)
T ss_pred             EEeccCC
Confidence            8876553

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.42  E-value=0.015  Score=48.45  Aligned_cols=99  Identities=16%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  135 (225)
                      .|++||=+|=+. ..+++++. ....+|+.+|+++..++..++.+...++.   ++....+... +|.       .    
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---i~~~~~DlR~~LP~-------~----  108 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---IEAVHYDLRDPLPE-------E----  108 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---T-------T----
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---eEEEEecccccCCH-------H----
Confidence            588999887443 34444332 44678999999999999999999988876   5566555432 110       0    


Q ss_pred             cccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCe-EEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGA-VVGI  181 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG-~l~~  181 (225)
                                -.++||+++++||+.  .+.-++......||..| ..++
T Consensus       109 ----------~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~  147 (243)
T PF01861_consen  109 ----------LRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYF  147 (243)
T ss_dssp             ----------TSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred             ----------HhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence                      247899999999975  46778888888998876 4444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK11524 putative methyltransferase; Provisional

Probab=97.34  E-value=0.00085  Score=57.51  Aligned_cols=52  Identities=23%  Similarity=0.285  Sum_probs=43.9

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .++...-.+|+.|||.+||+|+.++++.+.+ .+++|+|++++.++.|++++.
T Consensus       200 rlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        200 RIILASSNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHhCCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHH
Confidence            3344445689999999999999999988886 449999999999999999875

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.002  Score=56.55  Aligned_cols=118  Identities=17%  Similarity=0.157  Sum_probs=75.2

Q ss_pred             HHhhccCCCcEEEEcccccHHHHHHHhc---C--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           52 LQSLIKGGELFLDYGTGSGILGIAAIKF---G--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        52 L~~~~~~~~~vlDiGcGtG~~~~~l~~~---~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      |.--++++.+|||+++.+|.-+..+.+.   .  ...+++-|+++.-+.+.++.+.+.+..+  ..+...+...++-...
T Consensus       149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~--~~v~~~~~~~~p~~~~  226 (375)
T KOG2198|consen  149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN--LLVTNHDASLFPNIYL  226 (375)
T ss_pred             hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc--eeeecccceecccccc
Confidence            3334679999999999999888776552   2  2379999999998888887775444332  2222222222211000


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccchhH--------------------------HHHHHHHHHHhccCCeEEE
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------------------LLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~  180 (225)
                      .....             .....||-|+++.|...                          ...++.+..++||+||.++
T Consensus       227 ~~~~~-------------~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV  293 (375)
T KOG2198|consen  227 KDGND-------------KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV  293 (375)
T ss_pred             ccCch-------------hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence            00000             03457999999766311                          2357888999999999999


Q ss_pred             Eecc
Q 041459          181 ISGI  184 (225)
Q Consensus       181 ~~~~  184 (225)
                      .|+-
T Consensus       294 YSTC  297 (375)
T KOG2198|consen  294 YSTC  297 (375)
T ss_pred             Eecc
Confidence            8744

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.33  E-value=0.00062  Score=55.40  Aligned_cols=52  Identities=29%  Similarity=0.436  Sum_probs=38.9

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      ++.+++...-.+|+.|||.+||+|+.+.++.+.+ .+++|+|+++...+.|++
T Consensus       180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHhhhccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence            3334444445689999999999999999888885 459999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.31  E-value=0.0086  Score=51.39  Aligned_cols=59  Identities=25%  Similarity=0.269  Sum_probs=45.7

Q ss_pred             HHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        47 ~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ++.+.+..+ ++++...+|.--|.|+.+..+++. + ..+++|+|.+|.+++.|++.+...+
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~   72 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD   72 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence            334444433 557789999999999999987664 3 4669999999999999999876433

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.00054  Score=53.56  Aligned_cols=119  Identities=15%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             CCCcEEEEccc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .|.+|+++|.| +|..++.+|. .+...|...|-++.+++..++....|... .-.++....-...     ...      
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s-~~tsc~vlrw~~~-----~aq------   96 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS-SLTSCCVLRWLIW-----GAQ------   96 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc-ccceehhhHHHHh-----hhH------
Confidence            47899999999 4666777665 47788999999999999988876655322 1111211110000     000      


Q ss_pred             cccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCC-CcHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILS-EQLPHIINR  195 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~  195 (225)
                             .......||+|++.-.+   ++...+++.+..+|+|.|.-+++...+ .....+.+.
T Consensus        97 -------sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de  153 (201)
T KOG3201|consen   97 -------SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDE  153 (201)
T ss_pred             -------HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHH
Confidence                   01145689999995442   446678899999999999977755543 333334333

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.15  E-value=0.0049  Score=53.37  Aligned_cols=47  Identities=26%  Similarity=0.441  Sum_probs=35.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+++..++|.--|.|+.+..+++ .+..+++|+|.++.+++.|++++.
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~   65 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK   65 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence            45788999999999999998775 466899999999999999987765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK13699 putative methylase; Provisional

Probab=97.12  E-value=0.0024  Score=53.06  Aligned_cols=53  Identities=26%  Similarity=0.352  Sum_probs=43.9

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .++.....+|+.|||.+||+|+.++.+.+.+. +++|+|+++...+.|.+++..
T Consensus       155 ~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        155 PLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence            34444456899999999999999998888765 489999999999999888764

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.06  E-value=0.0012  Score=59.13  Aligned_cols=55  Identities=24%  Similarity=0.389  Sum_probs=49.0

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV  116 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~  116 (225)
                      -|||+|+|||.+++.+.+.|+..++|+|+-..|.+.|++....++.. +++.+...
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInk  123 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINK  123 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeecc
Confidence            68999999999999999999999999999999999999999999987 55655543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.03  E-value=0.0094  Score=50.69  Aligned_cols=41  Identities=22%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      ..+||=-|||.|+++..+|..|.. +.|.|.|--|+-...-.
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fi   97 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFI   97 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHH
Confidence            569999999999999999999875 89999999998665543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.01  E-value=0.0012  Score=56.40  Aligned_cols=137  Identities=20%  Similarity=0.231  Sum_probs=89.1

Q ss_pred             CCCCCCCcceeEEecccc-eecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHH-HHHhcCCCeEEEEeCCHHHHH
Q 041459           18 WSTPPDVQATNIILNPGL-AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGI-AAIKFGAAMSVGVDIDPQAIK   95 (225)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~-~l~~~~~~~v~~vDi~~~~l~   95 (225)
                      |....+. ++.+..+|.. .|+.|.   .....+++ .....+..|+|+.+|-|++++ .+...|++.|+++|.+|.+++
T Consensus       158 WV~~v~N-GI~~~~d~t~~MFS~GN---~~EK~Rv~-~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svE  232 (351)
T KOG1227|consen  158 WVKHVQN-GITQIWDPTKTMFSRGN---IKEKKRVL-NTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVE  232 (351)
T ss_pred             ceeehhc-CeEEEechhhhhhhcCc---HHHHHHhh-hcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHH
Confidence            8877666 6888888883 444443   12222333 223357999999999999999 678889999999999999999


Q ss_pred             HHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccC
Q 041459           96 SAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKP  175 (225)
Q Consensus        96 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkp  175 (225)
                      ..++++..|++. +......++....                       .+....|-|..... ..-..-...+.++|||
T Consensus       233 aLrR~~~~N~V~-~r~~i~~gd~R~~-----------------------~~~~~AdrVnLGLl-PSse~~W~~A~k~Lk~  287 (351)
T KOG1227|consen  233 ALRRNAEANNVM-DRCRITEGDNRNP-----------------------KPRLRADRVNLGLL-PSSEQGWPTAIKALKP  287 (351)
T ss_pred             HHHHHHHhcchH-HHHHhhhcccccc-----------------------Cccccchheeeccc-cccccchHHHHHHhhh
Confidence            999999988765 2223333332221                       14556777765332 2223345566778888


Q ss_pred             CeE--EEEecc
Q 041459          176 GAV--VGISGI  184 (225)
Q Consensus       176 gG~--l~~~~~  184 (225)
                      .|-  +=+.++
T Consensus       288 eggsilHIHen  298 (351)
T KOG1227|consen  288 EGGSILHIHEN  298 (351)
T ss_pred             cCCcEEEEecc
Confidence            544  434433

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.01  E-value=0.0021  Score=56.97  Aligned_cols=104  Identities=23%  Similarity=0.201  Sum_probs=74.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+++..++|+|||-|....+.+......++|+|.++.-+..+........+.+. ..+...+...-+             
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k-~~~~~~~~~~~~-------------  173 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNK-CNFVVADFGKMP-------------  173 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhh-cceehhhhhcCC-------------
Confidence            557778999999999999999998878899999999888888776665555532 112222211111             


Q ss_pred             cccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               .++..||.+-+.-..   .......+++++.+||||+++..
T Consensus       174 ---------fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  174 ---------FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             ---------CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence                     157788887764332   23567889999999999999874

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.99  E-value=0.00041  Score=62.80  Aligned_cols=107  Identities=17%  Similarity=0.242  Sum_probs=78.9

Q ss_pred             CCCcEEEEcccccHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||.-|+||.-++..++ . +..++++-|.++++++..+.|+..|+.. +.+.....+++..          +++.
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~l----------M~~~  177 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVL----------MYEH  177 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHH----------HHhc
Confidence            456899999999999886554 3 5778999999999999999999988765 3444444443221          1111


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      .        .....||+|-.+| |.....+++.+.+.+..||++++++.
T Consensus       178 ~--------~~~~~FDvIDLDP-yGs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  178 P--------MVAKFFDVIDLDP-YGSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             c--------ccccccceEecCC-CCCccHHHHHHHHHhhcCCEEEEEec
Confidence            0        0247899998765 55567788999999999999999644

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.022  Score=46.26  Aligned_cols=104  Identities=24%  Similarity=0.262  Sum_probs=71.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +++|.+||=+|+.+|+..-+.+.. +...++++|+++.+....-..+....    ++--...|++..     +.-..   
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~----Ni~PIL~DA~~P-----~~Y~~---  141 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP----NIIPILEDARKP-----EKYRH---  141 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC----CceeeecccCCc-----HHhhh---
Confidence            567899999999999998888863 56779999999998776654443221    122334444332     11111   


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHH-HHHHHHHhccCCeEEEEe
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-~l~~~~~~LkpgG~l~~~  182 (225)
                                 --+..|+|+.+.......+ ++.++...||+||.++++
T Consensus       142 -----------~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         142 -----------LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             -----------hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence                       1356899999877655554 567788999999977763

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.013  Score=45.36  Aligned_cols=117  Identities=19%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           44 TTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        44 ~~~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      ++..+...|.-.. .+..+.+|+|+|.|.+-+.+++.+....+|+|++|-....++-..-++++. +..++...+.=.+ 
T Consensus        57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~RkdlwK~-  134 (199)
T KOG4058|consen   57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFRRKDLWKV-  134 (199)
T ss_pred             cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhhhhhhhhc-
Confidence            4444444443332 234689999999999999999988777899999999999998887777765 3333332221111 


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                             ....|..+++-..-..+.++-..+..-+..+..++..-+.
T Consensus       135 -----------------------dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFP  174 (199)
T KOG4058|consen  135 -----------------------DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFP  174 (199)
T ss_pred             -----------------------cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecC
Confidence                                   2222333332222233455566677677777777654443

>PHA01634 hypothetical protein

Probab=96.84  E-value=0.003  Score=47.50  Aligned_cols=49  Identities=18%  Similarity=0.104  Sum_probs=45.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      .+++|+|+|++.|..+++.+..|++.|++++.++...+..+.+.+.+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            6899999999999999999999999999999999999999998887654

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.84  E-value=0.0058  Score=50.07  Aligned_cols=141  Identities=14%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             chHHHHHHHHHhhcc------CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459           43 ATTKLCLLLLQSLIK------GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV  116 (225)
Q Consensus        43 ~~~~~~~~~L~~~~~------~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~  116 (225)
                      .+.+.+.+||.....      ...++|||||=+......  ..+.-.++.+|+++..          .++    ....+.
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~----------~~I----~qqDFm   93 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH----------PGI----LQQDFM   93 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC----------CCc----eeeccc
Confidence            477888899976522      125999999875543332  2344459999998711          111    112221


Q ss_pred             cCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeE-----EEEe---
Q 041459          117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAV-----VGIS---  182 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~-----l~~~---  182 (225)
                      .....                     . .+.++||+|.++.+++.      .-+.+..+.+.|+|+|.     +++.   
T Consensus        94 ~rplp---------------------~-~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen   94 ERPLP---------------------K-NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             cCCCC---------------------C-CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            11000                     0 04678999999766533      34679999999999999     7764   


Q ss_pred             -ccCCC---cHHHHHHHHHhh-hhhhcccccCCceEEEeeeecc
Q 041459          183 -GILSE---QLPHIINRYSEF-LEDILLSEMDDWTCVSGTKKRA  221 (225)
Q Consensus       183 -~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~~~  221 (225)
                       |+...   ....+...+... |..+.......-.+..++|...
T Consensus       152 ~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~~~  195 (219)
T PF11968_consen  152 PCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKSGK  195 (219)
T ss_pred             hHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeecCC
Confidence             33221   233444555544 6666655556666666666544

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.78  E-value=0.0044  Score=51.17  Aligned_cols=120  Identities=14%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--C------C--CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--G------A--AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~------~--~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      .-++++|+++.+|..+..+++.  .      .  .+|++||+.+           ..+++.  +.....+..... .+..
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~G--V~qlq~DIT~~s-tae~  106 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEG--VIQLQGDITSAS-TAEA  106 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCc--eEEeecccCCHh-HHHH
Confidence            4479999999999999998863  1      1  2499999977           344442  222233322210 1111


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccch-----hHHH---------HHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL-----NPLL---------QLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~---------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                      .+..+             ..++.|+|+|+...     |.+.         ..+.-....|||||.++..-+......-+-
T Consensus       107 Ii~hf-------------ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLy  173 (294)
T KOG1099|consen  107 IIEHF-------------GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLY  173 (294)
T ss_pred             HHHHh-------------CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHH
Confidence            22222             56789999997542     3322         235556688999999998777777777777


Q ss_pred             HHHHhhhhhhc
Q 041459          194 NRYSEFLEDIL  204 (225)
Q Consensus       194 ~~~~~~~~~~~  204 (225)
                      ..++.+|..+.
T Consensus       174 sql~~ff~kv~  184 (294)
T KOG1099|consen  174 SQLRKFFKKVT  184 (294)
T ss_pred             HHHHHHhhcee
Confidence            77777765444

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.70  E-value=0.003  Score=53.60  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=69.7

Q ss_pred             HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +.+++.... .+..++|+|||.|-....   ++...++|.|++...+..|++.-   + .    .....++...+.    
T Consensus        36 v~qfl~~~~-~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~---~-~----~~~~ad~l~~p~----   99 (293)
T KOG1331|consen   36 VRQFLDSQP-TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSG---G-D----NVCRADALKLPF----   99 (293)
T ss_pred             HHHHHhccC-CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCC---C-c----eeehhhhhcCCC----
Confidence            344554443 388999999999965442   35556899999998887776431   1 0    233334433322    


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhHH------HHHHHHHHHhccCCeEEEEecc
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                        ....||..++-...+++      ..+++++.+.++|||-..+...
T Consensus       100 ------------------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  100 ------------------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             ------------------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence                              56789999887777774      3579999999999999666433

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.68  E-value=0.014  Score=48.91  Aligned_cols=51  Identities=22%  Similarity=0.221  Sum_probs=38.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIG  107 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~  107 (225)
                      ....+|+|+|||.-=+++.... .+...|+|.||+..+++...+.+...+..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~  155 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP  155 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence            3578999999999988886444 45568999999999999999888877755

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.67  E-value=0.0042  Score=54.79  Aligned_cols=105  Identities=23%  Similarity=0.363  Sum_probs=68.8

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|+=+|||+ |.+++.+++ .|+.+++++|.++.-++.|++........+        .....   .....      
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~--------~~~~~---~~~~~------  230 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN--------PSEDD---AGAEI------  230 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec--------Ccccc---HHHHH------
Confidence            445899999998 888777665 689999999999999999987432111111        00000   00000      


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                            ........+|+++-...   ....+..+.+++++||.+.+.++....
T Consensus       231 ------~~~t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         231 ------LELTGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             ------HHHhCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence                  01112346999987554   334678888999999999987766444

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.64  E-value=0.0072  Score=51.58  Aligned_cols=42  Identities=21%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +++|++||.|.++..+.+.|...+.++|+++.+++..++|..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence            689999999999888888888889999999999998888764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.55  E-value=0.00035  Score=56.72  Aligned_cols=90  Identities=17%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .+.++||+|+|.|.++..++-. ..+|++.|.|..|....++.    +.+   + +..  .+..                
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~yn---V-l~~--~ew~----------------  164 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NYN---V-LTE--IEWL----------------  164 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CCc---e-eee--hhhh----------------
Confidence            3579999999999999876643 35589999999998877653    211   0 100  0110                


Q ss_pred             cccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccC-CeEEEE
Q 041459          138 SHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKP-GAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~Lkp-gG~l~~  181 (225)
                             ..+-+||+|.|-..++   ..-.+++.+..+|+| +|.+++
T Consensus       165 -------~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv  205 (288)
T KOG3987|consen  165 -------QTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV  205 (288)
T ss_pred             -------hcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence                   0345799998833332   245678999999999 788776

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.50  E-value=0.0027  Score=56.71  Aligned_cols=98  Identities=22%  Similarity=0.300  Sum_probs=72.2

Q ss_pred             CCCCCCCcceeEEecccceecCCCCchHHHH--HHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHH
Q 041459           18 WSTPPDVQATNIILNPGLAFGTGEHATTKLC--LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIK   95 (225)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~   95 (225)
                      .++.+++++..++.|-+    .++|- +++.  .+.+....++|..|.|++||-|-+++.++..+ .++++-|.++++++
T Consensus       212 ~vtevre~~~~Fk~Dfs----kVYWn-sRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik  285 (495)
T KOG2078|consen  212 LVTEVREGGERFKFDFS----KVYWN-SRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIK  285 (495)
T ss_pred             eEEEEecCCeeEEEecc----eEEee-ccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHH
Confidence            34456666666665554    33333 2222  23344556789999999999999999998887 67999999999999


Q ss_pred             HHHHHHHhcCCCCCcceEEEecCCCC
Q 041459           96 SAHQNAALNNIGPKKMKLHLVPDRTF  121 (225)
Q Consensus        96 ~a~~~~~~~~~~~~~~~~~~~~~~~~  121 (225)
                      +.+.|++.|.+....++....++..+
T Consensus       286 ~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  286 WLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             HHHHhccccccchhheeeecccHHHH
Confidence            99999999988866677777666443

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=96.49  E-value=0.072  Score=44.80  Aligned_cols=141  Identities=11%  Similarity=0.017  Sum_probs=70.9

Q ss_pred             CCcEEEEcccccHHHHHHHh----c--CCCeEEEEeCCH--------------------------HHHHHHHHHHHhcCC
Q 041459           59 GELFLDYGTGSGILGIAAIK----F--GAAMSVGVDIDP--------------------------QAIKSAHQNAALNNI  106 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~----~--~~~~v~~vDi~~--------------------------~~l~~a~~~~~~~~~  106 (225)
                      ...|+|+||-.|..++.++.    .  ...++++.|.-+                          ..++..++|+...++
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            35799999999977665432    2  245688888411                          234445555554444


Q ss_pred             CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccc-hhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                      ..+++.+..+...               .+    +... +..++-++..+.- +.+....++.++..|.|||++++-+..
T Consensus       155 ~~~~v~~vkG~F~---------------dT----Lp~~-p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~  214 (248)
T PF05711_consen  155 LDDNVRFVKGWFP---------------DT----LPDA-PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYG  214 (248)
T ss_dssp             SSTTEEEEES-HH---------------HH----CCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             CcccEEEECCcch---------------hh----hccC-CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            3344444332210               00    0000 3456666666543 456678899999999999999998776


Q ss_pred             CCcHHHHHHHHHhhhhhhcccccCCceEEEeeee
Q 041459          186 SEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~  219 (225)
                      ......-.+.+............-+|.++.++|.
T Consensus       215 ~~gcr~AvdeF~~~~gi~~~l~~id~~~v~w~k~  248 (248)
T PF05711_consen  215 HPGCRKAVDEFRAEHGITDPLHPIDWTGVYWRKE  248 (248)
T ss_dssp             THHHHHHHHHHHHHTT--S--EE-SSS-EEEE--
T ss_pred             ChHHHHHHHHHHHHcCCCCccEEecCceEEEecC
Confidence            6333333333332222333344567888888873

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.48  E-value=0.031  Score=47.87  Aligned_cols=106  Identities=22%  Similarity=0.220  Sum_probs=77.1

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH--hcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA--LNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++++=+|.|.|.......+ ....+++-+|++...++..++..+  ..+.+..++.+..+|+-.+       ....  
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f-------l~~~--  191 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF-------LEDL--  191 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH-------HHHh--
Confidence            367899999999988776443 446779999999999999988776  4456666777777765322       0111  


Q ss_pred             ccccccccCCCCCCceeEEEeccc--hh-----HHHHHHHHHHHhccCCeEEEEec
Q 041459          135 DLSSHEIRGISETEKYDVVIANIL--LN-----PLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~--~~-----~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                 ..+.||+|+....  ..     ....+...+.+.||+||+++...
T Consensus       192 -----------~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  192 -----------KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             -----------ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence                       4678999998432  21     14567888999999999998853

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.46  E-value=0.007  Score=49.52  Aligned_cols=46  Identities=28%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             CCCcEEEEcccccHHHHHH--Hh-cCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           58 GGELFLDYGTGSGILGIAA--IK-FGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l--~~-~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .+.+++|-+||+|++.-.+  +. ....+++|.|+++.+++.|++|+..
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            3469999999999875543  32 3457799999999999999999863

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.45  E-value=0.018  Score=50.48  Aligned_cols=96  Identities=17%  Similarity=0.241  Sum_probs=65.4

Q ss_pred             ccCCCcEEEEccc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++|+=+|+| .|.+++.+++ .+ .+|+++|.+++-++.|++.-....+       ...+.+..        ..  
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i-------~~~~~~~~--------~~--  225 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVI-------NSSDSDAL--------EA--  225 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEE-------EcCCchhh--------HH--
Confidence            5689999999998 2477777777 56 8899999999999999865332221       11111111        00  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                  -.+.+|+|+...+    ...++...+.|++||++++.+..
T Consensus       226 ------------~~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         226 ------------VKEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ------------hHhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence                        1223999988655    34466777899999999987666

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.43  E-value=0.032  Score=50.76  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=72.0

Q ss_pred             ccCCC-cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGE-LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~-~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..+-. +++-+|||.-.++..+-+.|...|+.+|+|+..++.......   .......+...+.....+           
T Consensus        45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~---~~~~~~~~~~~d~~~l~f-----------  110 (482)
T KOG2352|consen   45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA---KERPEMQMVEMDMDQLVF-----------  110 (482)
T ss_pred             hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc---cCCcceEEEEecchhccC-----------
Confidence            33445 899999999999999888899999999999999988765432   122233444444433322           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-------------HHHHHHHHHHhccCCeEEEE
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-------------LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------~~~~l~~~~~~LkpgG~l~~  181 (225)
                                 ++++||+|+--..++.             ....+.++.+.|++||+++.
T Consensus       111 -----------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  111 -----------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             -----------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence                       6778888887544332             23568899999999999664

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.36  E-value=0.043  Score=44.77  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=53.9

Q ss_pred             CCCcEEEEcccccHHHHHHHh----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK----F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~----~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++.|+|+|.-.|.-+++.|.    . +..+|+|+|++......  +....+++. .++++..++....     +.+...
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~-~rI~~i~Gds~d~-----~~~~~v  103 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMS-PRITFIQGDSIDP-----EIVDQV  103 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSST-----HHHHTS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcccc-CceEEEECCCCCH-----HHHHHH
Confidence            589999999999988776553    2 56789999996544322  223334443 5677776665443     111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccc--hhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +.........+|+-+..  ..+....++....++++|+++++.+.
T Consensus       104 ---------~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  104 ---------RELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             ---------GSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             ---------HHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence                     11112334456665432  34456667778899999999988543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.34  E-value=0.092  Score=44.54  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=60.9

Q ss_pred             CcEEEEcccccH--HHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc--cccccc
Q 041459           60 ELFLDYGTGSGI--LGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE--RVDGIV  133 (225)
Q Consensus        60 ~~vlDiGcGtG~--~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  133 (225)
                      ..+||+|||-=+  ..-..++  .+..+|+-+|.+|.++..++..+..+.-  ....+...|..... .+.+  .....|
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~-~iL~~p~~~~~l  146 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPE-AILAHPEVRGLL  146 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HH-HHHCSHHHHCC-
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHH-HHhcCHHHHhcC
Confidence            589999999432  1222333  5789999999999999988887664431  22445555543321 1111  111121


Q ss_pred             cccccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEEeccCCCcHHH
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGISGILSEQLPH  191 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  191 (225)
                      +           .+..+-++++ ..++      ....++..+...|.||.++.++....+..+.
T Consensus       147 D-----------~~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~  198 (267)
T PF04672_consen  147 D-----------FDRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE  198 (267)
T ss_dssp             ------------TTS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH
T ss_pred             C-----------CCCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH
Confidence            1           2344555544 3332      3678899999999999999998666554433

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.28  E-value=0.051  Score=47.00  Aligned_cols=134  Identities=18%  Similarity=0.168  Sum_probs=71.6

Q ss_pred             chHHHHHHHHHhhccC------CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE-E
Q 041459           43 ATTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH-L  115 (225)
Q Consensus        43 ~~~~~~~~~L~~~~~~------~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~-~  115 (225)
                      ++.+-+++.|..+..+      ..+||--|||.|.++..++..|.. +-|-|+|--|+-...-.+-.-...+ ++.+. +
T Consensus       129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~n-q~~IYPf  206 (369)
T KOG2798|consen  129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQEN-QFTIYPF  206 (369)
T ss_pred             hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCC-cEEEEee
Confidence            3444555555554332      568999999999999999998765 5677877767654433321111111 11111 1


Q ss_pred             e--cCCCCCcccccccccccccccccc-----------------ccCC---CCCCceeEEEeccch---hHHHHHHHHHH
Q 041459          116 V--PDRTFPASMNERVDGIVEDLSSHE-----------------IRGI---SETEKYDVVIANILL---NPLLQLADHIV  170 (225)
Q Consensus       116 ~--~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~---~~~~~~DvIi~~~~~---~~~~~~l~~~~  170 (225)
                      .  -.+.+..   +++-..|..++.+-                 ++..   ...+.||+|+.++-.   +...++++.+.
T Consensus       207 Ih~~sn~~~~---dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~  283 (369)
T KOG2798|consen  207 IHQYSNSLSR---DDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIY  283 (369)
T ss_pred             eecccccccc---ccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHH
Confidence            0  0111000   00001110000000                 0000   123469999887654   44678899999


Q ss_pred             HhccCCeEEEE
Q 041459          171 SYAKPGAVVGI  181 (225)
Q Consensus       171 ~~LkpgG~l~~  181 (225)
                      +.|||||+-+=
T Consensus       284 ~iLk~GGvWiN  294 (369)
T KOG2798|consen  284 KILKPGGVWIN  294 (369)
T ss_pred             HhccCCcEEEe
Confidence            99999998763

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.93  E-value=0.082  Score=45.51  Aligned_cols=87  Identities=18%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++++=+|||. |.+++.+++ .|...+.++|.++..++.|...   .-++.          ...              
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~----------~~~--------------  196 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDP----------EKD--------------  196 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccCh----------hhc--------------
Confidence            577888888875 666666665 5777788889988776655431   00100          000              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ....+|+|+-...-.   ..++.+.++++++|.+++.+.
T Consensus       197 ----------~~~g~Dvvid~~G~~---~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       197 ----------PRRDYRAIYDASGDP---SLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             ----------cCCCCCEEEECCCCH---HHHHHHHHhhhcCcEEEEEee
Confidence                      123589888654322   345677789999999997554

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.77  E-value=0.081  Score=45.42  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=37.4

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +++|++||.|.++.-+.+.|...+.++|+++.+.+.-+.|..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~   43 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP   43 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence            689999999999999999888889999999999988888865

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.71  E-value=0.024  Score=47.26  Aligned_cols=104  Identities=17%  Similarity=0.124  Sum_probs=64.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+||=+|+++|+.--+.+..  +...|+++|.++.+=...-. +.... .  ++--...|+....     .- .+ 
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~n-mAkkR-t--NiiPIiEDArhP~-----KY-Rm-  222 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLIN-MAKKR-T--NIIPIIEDARHPA-----KY-RM-  222 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHH-Hhhcc-C--CceeeeccCCCch-----he-ee-
Confidence            678999999999999887777653  55779999998854332221 11111 0  1112222222110     00 00 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (225)
                                  .-...|+||++.+..... .+.-++...||+||.++++
T Consensus       223 ------------lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  223 ------------LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             ------------eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence                        234689999987765544 4566788899999999885

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.39  E-value=0.19  Score=44.35  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++|||+|.|+|+-...+-.. + ...++.++.|+.. ...-..+..+-.. ........+          .....+  
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~tl~~nv~t-~~td~r~s~----------vt~dRl--  178 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGDTLAENVST-EKTDWRASD----------VTEDRL--  178 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHHHHHhhccc-ccCCCCCCc----------cchhcc--
Confidence            4678999999999776654442 2 2456778888743 3333333322211 111011100          000000  


Q ss_pred             cccccccCCCCCCceeEEEe-ccchh-----HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          136 LSSHEIRGISETEKYDVVIA-NILLN-----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~-~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                             .+-....|++++. +-.++     ++...++.+..++.|||.+++.+-++....++....++.
T Consensus       179 -------~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~  241 (484)
T COG5459         179 -------SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI  241 (484)
T ss_pred             -------CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence                   0113445776665 22221     244579999999999999999888776666655554443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.34  E-value=0.15  Score=44.52  Aligned_cols=98  Identities=23%  Similarity=0.283  Sum_probs=59.3

Q ss_pred             cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++++|+=.|||. |.+++.+++ .|..+++++|.++..++.+++    .+..    .........+        ...+ 
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~--------~~~~-  230 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDL--------DHYK-  230 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccH--------HHHh-
Confidence            3688898888864 566666665 467689999999988887764    2321    0111000000        0000 


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ...+.+|+++....-   ...+..+.++|++||.++..+.
T Consensus       231 ----------~~~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        231 ----------AEKGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             ----------ccCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence                      012358999865432   2345677789999999988654

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.14  E-value=0.17  Score=42.51  Aligned_cols=110  Identities=17%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC----cceEEEecCCCCCcccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK----KMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..+||++|+|+|..++.++..+..+|...|.-. .+...+.+...+.....    .+.+...+=...     ......  
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~-----~~~~~~--  158 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNA-----LDVSFR--  158 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCc-----ccHhhc--
Confidence            457999999999888888887777788888654 44444444332222211    122221111100     000000  


Q ss_pred             ccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEeccCCC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                                 ....+|+|+..-+.   +.+..+...+..+|..++++++....++
T Consensus       159 -----------~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  159 -----------LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             -----------cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence                       12228999885443   3356778888888888887766544443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.14  E-value=0.028  Score=51.37  Aligned_cols=95  Identities=16%  Similarity=0.093  Sum_probs=58.3

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE  140 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (225)
                      .|+|+.+|.|+++..|...+   ++..-+.|..-......+...|+-.    ...-=++.|+.                 
T Consensus       368 NVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLIG----~yhDWCE~fsT-----------------  423 (506)
T PF03141_consen  368 NVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLIG----VYHDWCEAFST-----------------  423 (506)
T ss_pred             eeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccch----hccchhhccCC-----------------
Confidence            79999999999999988765   3333333321111111222333321    11111222210                 


Q ss_pred             ccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEecc
Q 041459          141 IRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       141 ~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                           =+.+||+|.++..+..      +..++-++-|.|+|+|.+++.+.
T Consensus       424 -----YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  424 -----YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             -----CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence                 3678999999877654      45788999999999999999643

; GO: 0008168 methyltransferase activity

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.88  E-value=0.12  Score=45.07  Aligned_cols=94  Identities=15%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .++|++|+=+|||. |.+++.+++  .+..+++++|.++.-++.++.    .+..     .. .  +.+.          
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~-----~~-~--~~~~----------  218 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET-----YL-I--DDIP----------  218 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce-----ee-h--hhhh----------
Confidence            45689999999875 555555454  356789999999988777753    1111     00 0  0010          


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                   ....+|+|+-...-......+....++|+++|.+++.+.
T Consensus       219 -------------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         219 -------------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             -------------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence                         122489888644321123457778889999999987554

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.74  E-value=0.084  Score=43.96  Aligned_cols=80  Identities=16%  Similarity=0.251  Sum_probs=43.5

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-------CcceEEEecCCCCCccccccccccc
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP-------KKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +|||.-+|-|.=++.++..|. +|+++|.+|-+....+..+....-..       .++++...+...+            
T Consensus        78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~------------  144 (234)
T PF04445_consen   78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY------------  144 (234)
T ss_dssp             -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH------------
T ss_pred             EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH------------
Confidence            899999999999998888776 59999999987666655543221111       2445555444322            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHH
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPL  162 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~  162 (225)
                             +.  .+..+||+|..+|++...
T Consensus       145 -------L~--~~~~s~DVVY~DPMFp~~  164 (234)
T PF04445_consen  145 -------LR--QPDNSFDVVYFDPMFPER  164 (234)
T ss_dssp             -------CC--CHSS--SEEEE--S----
T ss_pred             -------Hh--hcCCCCCEEEECCCCCCc
Confidence                   01  156789999999998753

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.65  E-value=0.21  Score=46.30  Aligned_cols=69  Identities=26%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             CCCCchHHHHHHHHHhhcc----CCCcEEEEcccccHHHHHHHh---cC--CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459           39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIK---FG--AAMSVGVDIDPQAIKSAHQNAALNNIG  107 (225)
Q Consensus        39 ~~~~~~~~~~~~~L~~~~~----~~~~vlDiGcGtG~~~~~l~~---~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~  107 (225)
                      .|...+.+.+...+...+.    ++..+.|..||+|.+.....+   .+  ...++|.+..+.+...|+.|+..++..
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~  271 (501)
T TIGR00497       194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID  271 (501)
T ss_pred             CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence            3555666666666555422    346899999999988775432   12  256899999999999999998777654

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.59  E-value=0.075  Score=47.26  Aligned_cols=45  Identities=24%  Similarity=0.519  Sum_probs=35.7

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      +.++.+|+..|||+ |.+++.+++ .+..+++++|.++..++.++..
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            45688999999887 777777766 4655799999999988888754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.40  E-value=0.047  Score=39.82  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=38.7

Q ss_pred             eeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCC
Q 041459           15 VPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDID   90 (225)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~   90 (225)
                      ...|.+-++..++.++ |-+         .+.-++.+....  ..+....+|+|||+|.+.-.|.+.|.. =.|+|..
T Consensus        23 v~~W~E~TdP~K~VfE-Dla---------IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R   89 (112)
T PF07757_consen   23 VDNWPESTDPQKHVFE-DLA---------IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDAR   89 (112)
T ss_pred             HHhCcccCCchhhHHH-HHH---------HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCC-ccccccc
Confidence            3567776666666555 222         112222222222  123568999999999998888877654 2577753

; GO: 0008168 methyltransferase activity

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.15  E-value=1.4  Score=34.68  Aligned_cols=109  Identities=15%  Similarity=0.027  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc
Q 041459           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA  123 (225)
Q Consensus        44 ~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (225)
                      +...+...+.....++.+|+=+||=+-...+.-...+..+++..|++...-        ..+   .. .+.+.|.+... 
T Consensus        11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~~---~~-~F~fyD~~~p~-   77 (162)
T PF10237_consen   11 TAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QFG---GD-EFVFYDYNEPE-   77 (162)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hcC---Cc-ceEECCCCChh-
Confidence            444444444444445678999988775555543224566799999988442        211   11 23444443320 


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEe
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                          .+..           .  -.++||+|+++||+   +........+..++|+++.++++
T Consensus        78 ----~~~~-----------~--l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~  122 (162)
T PF10237_consen   78 ----ELPE-----------E--LKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC  122 (162)
T ss_pred             ----hhhh-----------h--cCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence                0000           0  24689999999998   23455667777778888888774

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.14  E-value=0.28  Score=42.66  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=35.9

Q ss_pred             EEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           62 FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        62 vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      |+|++||.|.++.-+.+.|..-+.++|+++.+.+.-+.|..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~   41 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG   41 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence            58999999999998888887778899999999988887754

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11524 putative methyltransferase; Provisional

Probab=94.13  E-value=0.073  Score=45.58  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             CCCceeEEEeccchhH-------------------HHHHHHHHHHhccCCeEEEEe
Q 041459          146 ETEKYDVVIANILLNP-------------------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      +++++|+|+++||+..                   +...+..+.++|||||.+++.
T Consensus        24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524         24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            5678999999999731                   245789999999999999985

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.07  E-value=0.27  Score=43.05  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=38.4

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      ..+++|++||.|.+..-+...|..-+.++|+++.+++.-+.|..
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~   46 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP   46 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence            45799999999999988888888889999999999888877755

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.88  E-value=0.37  Score=44.78  Aligned_cols=110  Identities=17%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC--------CCCccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR--------TFPASMNE  127 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  127 (225)
                      ++.+|+=+|||. |..++..++ .|+ .|+++|.++..++.+++.    |..  .+.+...+.+        ..+.+..+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~--~v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAE--FLELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCe--EEEeccccccccccchhhhcchhHHH
Confidence            688999999998 777777665 576 699999999999888752    311  0111111100        00000000


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      .....+.          +....+|++|.......   ...+.+++.+.+||||+++....
T Consensus       237 ~~~~~~~----------~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        237 AEMALFA----------EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHH----------hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0000000          01246999998654322   22335889999999999887543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.72  E-value=0.065  Score=39.22  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=26.3

Q ss_pred             ceeEEEeccch---------hHHHHHHHHHHHhccCCeEEEEe
Q 041459          149 KYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       149 ~~DvIi~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      +||+|+|-..-         +.+..++..+++.|+|||.+++.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            48999984432         33677899999999999999983

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=93.71  E-value=0.22  Score=46.07  Aligned_cols=115  Identities=18%  Similarity=0.207  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHhhccC-----CCcEEEEcccccHHHHH---HHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE
Q 041459           44 TTKLCLLLLQSLIKG-----GELFLDYGTGSGILGIA---AIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL  113 (225)
Q Consensus        44 ~~~~~~~~L~~~~~~-----~~~vlDiGcGtG~~~~~---l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~  113 (225)
                      ++..+...|.+.+.+     -.+|+=+|+|-|-+...   +++.  ..-+++++|.+|+++...+. ....... +++++
T Consensus       348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~-~~Vti  425 (649)
T KOG0822|consen  348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD-NRVTI  425 (649)
T ss_pred             HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc-CeeEE
Confidence            455666666555332     23678899999966554   3332  23458999999999988765 3444444 56777


Q ss_pred             EEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--h--H-HHHHHHHHHHhccCCeEEEEe
Q 041459          114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--N--P-LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~--~-~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ...|...+..                      +..+.|++++...-  .  . -.+.+..+-+.|||+|+.+-+
T Consensus       426 i~~DMR~w~a----------------------p~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  426 ISSDMRKWNA----------------------PREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             EeccccccCC----------------------chhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            7766665531                      34788999874321  1  1 246788888999999887653

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.70  E-value=0.35  Score=39.27  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=24.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEE
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGV   87 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~v   87 (225)
                      +++|.+|+|+-.|.|.++..++..  +...|++.
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~   79 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY   79 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEe
Confidence            568999999999999999887753  23345444

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=93.23  E-value=0.24  Score=43.10  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             EEEcccccHHHHHH-HhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccccccccccc
Q 041459           63 LDYGTGSGILGIAA-IKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGIVEDLSSHE  140 (225)
Q Consensus        63 lDiGcGtG~~~~~l-~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  140 (225)
                      +|||+|+-.+--.+ +........+.|++.-....|+.|+..+++. +.+.+..... ..+                  +
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~~ktl------------------l  167 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEPQKTL------------------L  167 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-cceeeEEecchhhc------------------c
Confidence            68877765443222 2333466899999999999999999999887 4455444322 111                  1


Q ss_pred             ccCCC--CCCceeEEEeccchh
Q 041459          141 IRGIS--ETEKYDVVIANILLN  160 (225)
Q Consensus       141 ~~~~~--~~~~~DvIi~~~~~~  160 (225)
                      ++...  ++..||...||||+.
T Consensus       168 ~d~~~~~~e~~ydFcMcNPPFf  189 (419)
T KOG2912|consen  168 MDALKEESEIIYDFCMCNPPFF  189 (419)
T ss_pred             hhhhccCccceeeEEecCCchh
Confidence            11111  345699999999973

>PRK13699 putative methylase; Provisional

Probab=93.06  E-value=0.13  Score=42.64  Aligned_cols=52  Identities=8%  Similarity=0.039  Sum_probs=36.1

Q ss_pred             CCCceeEEEeccchh------------------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          146 ETEKYDVVIANILLN------------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                      +++++|+|+.+||+.                  .+...+.+++++|||||.+++.+.. .....+...+.+
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~-~~~~~~~~al~~   86 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW-NRVDRFMAAWKN   86 (227)
T ss_pred             CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc-ccHHHHHHHHHH
Confidence            678899999999984                  2346788999999999998763222 223444444443

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.02  E-value=0.25  Score=43.26  Aligned_cols=103  Identities=20%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++++||=.|+|. |.+++.+++ .|..+++++|.++.-++.+++    .+.+    .+.......+    .+.+..  
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~----~~~i~~--  239 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT----HTVNSSGTDP----VEAIRA--  239 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcCCCcCH----HHHHHH--
Confidence            45788999888764 555566665 466679999999988877753    2321    0111111110    000000  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ......+|+++-...-   ...+....+++++||.+++.+..
T Consensus       240 ----------~~~~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       240 ----------LTGGFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             ----------HhCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECCC
Confidence                      1123458998864322   23456677899999999876543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=93.00  E-value=0.073  Score=45.34  Aligned_cols=54  Identities=22%  Similarity=0.285  Sum_probs=40.9

Q ss_pred             CchHHHHHHHHH-----hhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHH
Q 041459           42 HATTKLCLLLLQ-----SLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIK   95 (225)
Q Consensus        42 ~~~~~~~~~~L~-----~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~   95 (225)
                      ++.+-.+...+.     .....+++|||+|||+|.-++.+...+...+...|++...++
T Consensus        95 wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen   95 WECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             eecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            444444444444     223478999999999999999988888788999999988773

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=92.77  E-value=0.3  Score=45.90  Aligned_cols=122  Identities=19%  Similarity=0.179  Sum_probs=70.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++..|||+||.+|.....+++. |. .-|+|+|+.|-           ..+.+.  .-...+...-  ..+..+    
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c--~t~v~dIttd--~cr~~l----  102 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNC--DTLVEDITTD--ECRSKL----  102 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCcc--chhhhhhhHH--HHHHHH----
Confidence            668899999999999999988874 43 45899998772           122210  0001111000  000011    


Q ss_pred             cccccccccCCCCCCceeEEEeccch----hHH----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL----NPL----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~----~~~----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                              +.+....+.|+|+.+...    .+.          ...+.-+...|+.||.++--.+.......+...+.+.
T Consensus       103 --------~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qL  174 (780)
T KOG1098|consen  103 --------RKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQL  174 (780)
T ss_pred             --------HHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHH
Confidence                    111134456888885442    111          1235556678899999766566666777777777776


Q ss_pred             hhhhc
Q 041459          200 LEDIL  204 (225)
Q Consensus       200 ~~~~~  204 (225)
                      |..+.
T Consensus       175 f~kv~  179 (780)
T KOG1098|consen  175 FKKVE  179 (780)
T ss_pred             HHHHH
Confidence            65443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.62  E-value=0.55  Score=41.40  Aligned_cols=101  Identities=16%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++++|+=.|+|. |.++..+++ .|..+++++|.++.-++.+++    .+..    .........+    .+.+..  
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~----~~~i~~--  254 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT----ATVNAGDPNA----VEQVRE--  254 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc----eEeCCCchhH----HHHHHH--
Confidence            45788888888764 555555565 466679999999988887754    2321    0111110110    011111  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                . ..+.+|+++-....   ...+....+.++++|.++..+.
T Consensus       255 ----------~-~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         255 ----------L-TGGGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             ----------H-hCCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence                      1 12268999864322   2345667789999999887544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.59  E-value=0.27  Score=44.91  Aligned_cols=126  Identities=16%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             CCCcEEEEcccccHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+..++=+|-|.|.+..++. +.+..++++++++|.+++.|..+.....-  ++..++..++-.+       +.....  
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~~-------~~~~~k--  363 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLDF-------LQRTAK--  363 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchHH-------HHHHhh--
Confidence            34577888888899988765 46778899999999999999887653221  1222333333211       111000  


Q ss_pred             ccccccCCCCCCceeEEEeccc-----------hhHH-HHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhhh
Q 041459          137 SSHEIRGISETEKYDVVIANIL-----------LNPL-LQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEFL  200 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~-----------~~~~-~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~  200 (225)
                            .-..+.+||+++.+.-           .... ..++..+...|.|.|.+++.....  ....++...+++.|
T Consensus       364 ------~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf  435 (482)
T KOG2352|consen  364 ------SQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF  435 (482)
T ss_pred             ------ccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence                  0014567999988421           1112 346788889999999999865543  34455666666554

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.46  E-value=1.9  Score=37.32  Aligned_cols=91  Identities=19%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+||=.|+|. |.+++.+++ .|. ++++++.++.-++.+++    .+...    ..  +....            
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~----vi--~~~~~------------  219 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS----AG--GAYDT------------  219 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce----ec--ccccc------------
Confidence            55788999999764 445555555 454 59999999888777754    33220    10  00000            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ..+.+|+++.....   ...+....+.|++||++++.+.
T Consensus       220 ------------~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       220 ------------PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             ------------CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence                        12347765542222   2357778889999999988655

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=92.46  E-value=0.089  Score=38.89  Aligned_cols=91  Identities=20%  Similarity=0.325  Sum_probs=57.8

Q ss_pred             cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCC
Q 041459           68 GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE  146 (225)
Q Consensus        68 GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      |.|.+++.+++ .| .+++++|.++.-++.+++.    +..    .+.......+    .+.+...            ..
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~----~~~~~~~~~~----~~~i~~~------------~~   55 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD----HVIDYSDDDF----VEQIREL------------TG   55 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES----EEEETTTSSH----HHHHHHH------------TT
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc----cccccccccc----ccccccc------------cc
Confidence            45778887776 46 8899999999988888653    321    1222111111    1111111            13


Q ss_pred             CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                      ...+|+++-+..-   ...++...++|+++|.+++.+...
T Consensus        56 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   56 GRGVDVVIDCVGS---GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             TSSEEEEEESSSS---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             cccceEEEEecCc---HHHHHHHHHHhccCCEEEEEEccC
Confidence            4579999876542   346677888999999999976654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.46  E-value=1  Score=38.55  Aligned_cols=101  Identities=21%  Similarity=0.181  Sum_probs=67.5

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC-CCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR-TFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  135 (225)
                      .|+.|+=+| -.-..+++++- .-+.++..+||++..++...+.+...++++  +.....|.. .+|.+           
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~--ie~~~~Dlr~plpe~-----------  217 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN--IEAFVFDLRNPLPED-----------  217 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc--hhheeehhcccChHH-----------
Confidence            467788888 44455665443 335779999999999999999998888764  333322221 11100           


Q ss_pred             cccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCC---eEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPG---AVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~Lkpg---G~l~~~  182 (225)
                                -.++||+++.+||..  .++.++..-...||--   |++.++
T Consensus       218 ----------~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT  259 (354)
T COG1568         218 ----------LKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT  259 (354)
T ss_pred             ----------HHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence                      246899999999864  4566777766677765   666664

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.45  E-value=2.1  Score=36.96  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=66.8

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++|+=+|+|. | .++..|++.|. .|+.++-++..++..+++   .|+.     +.. .+..........         
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~-----i~~-~g~~~~~~~~~~---------   63 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLT-----LVE-QGQASLYAIPAE---------   63 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeE-----Eee-CCcceeeccCCC---------
Confidence            5688999997 5 45666777765 489999877666555432   1211     110 000000000000         


Q ss_pred             cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  196 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (225)
                           .....+.+|+|+...--.+....+..+...+.++..+++..++-...+.+.+.+
T Consensus        64 -----~~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~  117 (305)
T PRK05708         64 -----TADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARV  117 (305)
T ss_pred             -----CcccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence                 000235799998876666777888899999999998877656555555555443

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=92.45  E-value=1  Score=39.62  Aligned_cols=19  Identities=26%  Similarity=0.174  Sum_probs=13.5

Q ss_pred             CCCcEEEEcccccHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAA   76 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l   76 (225)
                      +..+|+|+||.+|..++.+
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~   34 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLA   34 (334)
T ss_dssp             TEEEEEEES--SSHHHHHH
T ss_pred             CceEEEecCCCCCccHHHH
Confidence            3469999999999887764

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=92.44  E-value=0.61  Score=39.64  Aligned_cols=54  Identities=30%  Similarity=0.469  Sum_probs=43.8

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      +.+......+..|+|..+|+|+.++.+...+.. ++|+|+++...+.+.+++...
T Consensus       214 r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~-~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         214 RLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRR-FIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHhcCCCCCEEeecCCCCChHHHHHHHcCCc-eEEEecCHHHHHHHHHHHHhh
Confidence            344444557899999999999999988777544 899999999999998887633

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=92.07  E-value=0.33  Score=42.56  Aligned_cols=51  Identities=27%  Similarity=0.498  Sum_probs=40.8

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      +++|.+|.=+|||. |..++.-++ .++.+++++|+++.-+++|++.-..+.+
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~v  235 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV  235 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceee
Confidence            66899999999997 776776554 6899999999999999999875444433

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=92.03  E-value=1.8  Score=38.75  Aligned_cols=18  Identities=28%  Similarity=0.172  Sum_probs=14.4

Q ss_pred             CCcEEEEcccccHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAA   76 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l   76 (225)
                      ..+|+|+|||+|..++.+
T Consensus        64 ~~~iaDlGcs~G~ntl~~   81 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHI   81 (386)
T ss_pred             ceeEEEecCCCCccHHHH
Confidence            458999999999776554

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.59  E-value=0.47  Score=40.07  Aligned_cols=99  Identities=22%  Similarity=0.212  Sum_probs=57.9

Q ss_pred             cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++++|+=+|+|+ |.++..+++ .|..+++++|.++.-++.+++.    +...    ...  .....    +....   
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~----~i~--~~~~~----~~~~~---  181 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATA----LAE--PEVLA----ERQGG---  181 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcE----ecC--chhhH----HHHHH---
Confidence            3678899888765 555555555 4666699999999887777642    3210    000  00000    00000   


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ......+|+++-...-   ...+..+.+.++++|.+++...
T Consensus       182 ---------~~~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       182 ---------LQNGRGVDVALEFSGA---TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             ---------HhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEecc
Confidence                     0123468998864321   2346677889999999987654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.54  E-value=0.75  Score=37.71  Aligned_cols=100  Identities=19%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             cCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|+..|+|+ |.....+++....++++++.++...+.++..    +..    ..........    .+.+.     
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~----~~~~~-----  195 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD----HVIDYKEEDL----EEELR-----  195 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc----eeccCCcCCH----HHHHH-----
Confidence            5788999999986 5555555554337799999998777666432    211    0110000000    00000     


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ......+|+++.+....   ..+..+.+.++++|.++....
T Consensus       196 --------~~~~~~~d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         196 --------LTGGGGADVVIDAVGGP---ETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             --------HhcCCCCCEEEECCCCH---HHHHHHHHhcccCCEEEEEcc
Confidence                    01345799998765431   345667788899999887543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.48  E-value=0.97  Score=34.32  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=38.0

Q ss_pred             CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459          147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  196 (225)
Q Consensus       147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (225)
                      ...+|+|+...--......++.+.+.+.++..+++..++-...+.+.+.+
T Consensus        65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF  114 (151)
T ss_dssp             HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred             cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence            56799999988777788899999999999988888666655555554444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=91.35  E-value=0.72  Score=41.13  Aligned_cols=43  Identities=16%  Similarity=0.129  Sum_probs=34.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      +-..++|+|+|.|.++..++-.....|.++|-|....+.|++.
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            4479999999999999998865456699999998777776543

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=91.34  E-value=3.6  Score=34.19  Aligned_cols=95  Identities=22%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+++-.|+|. |..++.+++ .+..++++++.++...+.+++.    +.. +.+ ... .....            
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-~~~-~~~-~~~~~------------  155 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-DPV-AAD-TADEI------------  155 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-ccc-ccc-chhhh------------
Confidence            45678888888765 555555555 4554599999988887766542    211 000 000 00000            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ....+|+++.....   ...+....+.++++|.++..+.
T Consensus       156 ------------~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         156 ------------GGRGADVVIEASGS---PSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             ------------cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEEEec
Confidence                        23468998864322   2345677788999999886443

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=91.07  E-value=0.74  Score=39.40  Aligned_cols=101  Identities=20%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +.++.+||..|+|. |..++.+++....++++++.++...+.+++    .+..    ..........    .... .   
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~----~~~~-~---  226 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSP----KDKK-A---  226 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCH----HHHH-H---
Confidence            45678888887763 666666666433459999999988777743    2322    0111111010    0000 0   


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ......+|+++.+...   ...+..+.+.|+++|.++..+.
T Consensus       227 ---------~~~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         227 ---------AGLGGGFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             ---------HhcCCCceEEEECCCC---HHHHHHHHHHhhcCCEEEEECC
Confidence                     0134569998864322   2456677899999999987543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.85  E-value=1.7  Score=37.95  Aligned_cols=96  Identities=16%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             cCCCcEEEEcccc-cHHHHHHHhc-CCCeEEEEeC---CHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           57 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGVDI---DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        57 ~~~~~vlDiGcGt-G~~~~~l~~~-~~~~v~~vDi---~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      +++.+|+=.|+|. |.++..+++. |. ++++++.   ++.-++.+++    .+..  .  +. ...+...    +    
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~--~--v~-~~~~~~~----~----  232 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT--Y--VN-SSKTPVA----E----  232 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE--E--ec-CCccchh----h----
Confidence            4688999988875 5666666664 55 6999987   5666665543    2321  0  11 0000000    0    


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                      .            .....+|+|+-...-.   ..+..+.+.|+++|.+++.+..
T Consensus       233 ~------------~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         233 V------------KLVGEFDLIIEATGVP---PLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             h------------hhcCCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEecC
Confidence            0            0234689988754322   2567788899999999875543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=90.72  E-value=0.99  Score=39.20  Aligned_cols=102  Identities=18%  Similarity=0.290  Sum_probs=57.3

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+|+=.|+|+ |.+++.+++ .|...+++++.++.-++.+++    .+..    ..........     +.+.   
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~-----~~~~---  221 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSA-----PQIQ---  221 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCH-----HHHH---
Confidence            44688898888765 555555555 466668999999988777643    2321    0110000000     0000   


Q ss_pred             cccccccccCCCCCCcee-EEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYD-VVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~D-vIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               .......+| +++-...-   ...+....++|++||.+++.+..
T Consensus       222 ---------~~~~~~~~d~~v~d~~G~---~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        222 ---------SVLRELRFDQLILETAGV---PQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             ---------HHhcCCCCCeEEEECCCC---HHHHHHHHHHhhcCCEEEEEccC
Confidence                     011234577 55543222   23566777899999999886553

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=90.22  E-value=0.7  Score=36.23  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHhhccCCCcEEEEcccccHHHHH-HHhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCC
Q 041459           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAA-MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  121 (225)
Q Consensus        44 ~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~-l~~~~~~-~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  121 (225)
                      ....+...|......|++|.=.|+|+...++. .+..... --..+|.+|.     ++....   ....+.+.  ..+.+
T Consensus        53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-----K~G~~~---PGt~ipI~--~p~~l  122 (160)
T PF08484_consen   53 SKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-----KQGKYL---PGTHIPIV--SPEEL  122 (160)
T ss_dssp             HHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-----GTTEE----TTT--EEE--EGGG-
T ss_pred             HHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-----hcCccc---CCCCCeEC--CHHHH
Confidence            33444455555555789999999999766653 4444222 3468898872     111111   11112222  11111


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                                              .....|.++. .+.....++++.+...++.||.+++
T Consensus       123 ------------------------~~~~pd~viv-law~y~~EI~~~~~~~~~~gg~fi~  157 (160)
T PF08484_consen  123 ------------------------KERKPDYVIV-LAWNYKDEIIEKLREYLERGGKFIV  157 (160)
T ss_dssp             -------------------------SS--SEEEE-S-GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred             ------------------------hhCCCCEEEE-cChhhHHHHHHHHHHHHhcCCEEEE
Confidence                                    2445677665 3345567888888899999999987

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.22  E-value=1.2  Score=38.50  Aligned_cols=101  Identities=17%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+||=.|+|. |.+++.+++ .|..++++++.++.-++.+++.    +..    .+........     +.+.   
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~----~~i~~~~~~~-----~~~~---  224 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD----FVINSGQDDV-----QEIR---  224 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC----EEEcCCcchH-----HHHH---
Confidence            45688898888754 445555555 4666699999998887776532    321    0111000000     0000   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               .......+|+++-...-.   ..+....+.|+++|.+++.+.
T Consensus       225 ---------~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         225 ---------ELTSGAGADVAIECSGNT---AARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             ---------HHhCCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEEcC
Confidence                     011334699998643322   234566788999999987544

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02740 Alcohol dehydrogenase-like

Probab=90.18  E-value=2.6  Score=37.35  Aligned_cols=44  Identities=25%  Similarity=0.540  Sum_probs=33.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      +++|++||=.|+|. |.+++.+++ .|..+++++|.++.-++.+++
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            55788999998865 555555565 466579999999988888754

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.07  E-value=2.7  Score=36.05  Aligned_cols=99  Identities=16%  Similarity=0.232  Sum_probs=57.3

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  132 (225)
                      +++|.+||=.|+ | .|.+++.+++....++++++.++...+.++.    .+.+    .+...+. ..+.    +...  
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~----~vi~~~~~~~~~----~~~~--  201 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD----VAFNYKTVKSLE----ETLK--  201 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeccccccHH----HHHH--
Confidence            557889988884 3 4677777776433468999988877776643    2322    1111111 1110    0000  


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                .. ..+.+|+++-...-    ..+....+.|+++|.++..+
T Consensus       202 ----------~~-~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       202 ----------KA-SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             ----------Hh-CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEec
Confidence                      11 23469999864332    23567788999999998643

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=89.85  E-value=0.81  Score=38.33  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             CCcEEEEcccccHHHHHHHhc---------CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           59 GELFLDYGTGSGILGIAAIKF---------GAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~---------~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      ..+|+|+|+|+|.++..+++.         ...+|+.+|+||.+.+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            369999999999998876542         135799999999888777777654

; PDB: 4F3N_A 1ZKD_B.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.44  E-value=1.3  Score=39.58  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      .++..+.-++.|.  +.++++||-| ++.|..++.++..+.++|++||+||..+...+-++
T Consensus        20 ~WEDp~vD~~aL~--i~~~d~vl~I-tSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   20 CWEDPRVDMEALN--IGPDDRVLTI-TSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             ccCCcHHHHHHhC--CCCCCeEEEE-ccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence            3555555556663  3478899999 55666666555555678999999999887765444

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.31  E-value=2.5  Score=37.96  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=30.9

Q ss_pred             CcEEEEcccc-cHHHHH-HHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           60 ELFLDYGTGS-GILGIA-AIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        60 ~~vlDiGcGt-G~~~~~-l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      ++||=+|||. |....+ +++.+..+|+.+|.+....+.+...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~   44 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL   44 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence            5789999975 544444 5677778899999998887777554

>PRK10458 DNA cytosine methylase; Provisional

Probab=88.93  E-value=1.8  Score=39.83  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=37.0

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+++|++||.|.+..-+-..|...+.++|+++.+.+.-+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            4599999999999999887778778899999998888777764

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.83  E-value=0.96  Score=39.42  Aligned_cols=48  Identities=29%  Similarity=0.397  Sum_probs=37.5

Q ss_pred             hccCCCcEEEEcccccHH-HHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           55 LIKGGELFLDYGTGSGIL-GIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~~-~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+++|.++.-+|+|.=.+ .+.-++ .|+++++|+|+++.-.+.|++.-.
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa  238 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA  238 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence            467899999999998444 444444 689999999999999999986543

>PLN02827 Alcohol dehydrogenase-like

Probab=88.81  E-value=2.8  Score=37.19  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  132 (225)
                      +++|.+||-.|+|+ |.+++.+++ .|...++++|.++...+.|++    .+...   .+...+. ..+    .+.+...
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~---~i~~~~~~~~~----~~~v~~~  259 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTD---FINPNDLSEPI----QQVIKRM  259 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE---EEcccccchHH----HHHHHHH
Confidence            45788999988765 555555555 576679999998887777643    23220   0110000 000    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEeccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  185 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  185 (225)
                                   ....+|+++-...-.   ..+....+.+++| |.+++.+..
T Consensus       260 -------------~~~g~d~vid~~G~~---~~~~~~l~~l~~g~G~iv~~G~~  297 (378)
T PLN02827        260 -------------TGGGADYSFECVGDT---GIATTALQSCSDGWGLTVTLGVP  297 (378)
T ss_pred             -------------hCCCCCEEEECCCCh---HHHHHHHHhhccCCCEEEEECCc
Confidence                         122689998643321   2355677788998 999875443

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=88.71  E-value=1.5  Score=38.15  Aligned_cols=102  Identities=20%  Similarity=0.266  Sum_probs=58.5

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+||-.|+|. |..++.+++ .|...++++|.++...+.+++    .+..    .+.......+.    +.     
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~----~~-----  226 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT----DIVDYKNGDVV----EQ-----  226 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc----eEecCCCCCHH----HH-----
Confidence            45688888887764 455555555 466679999999887777663    2321    01111111110    00     


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                             +........+|+++....-   ...+..+.+.|+++|.++..+.
T Consensus       227 -------i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         227 -------ILKLTGGKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             -------HHHHhCCCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence                   0111134568999864322   2356677888999999886544

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=88.20  E-value=2.2  Score=37.80  Aligned_cols=58  Identities=17%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             HHHHHHHhhccC-CCcEEEEcccccHHHHHHHhc---------CCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           47 LCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKF---------GAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        47 ~~~~~L~~~~~~-~~~vlDiGcGtG~~~~~l~~~---------~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      .+.+++.....+ ...++|+|+|+|.++..+++.         ...+|..+|+|++..+.-++++...
T Consensus        65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            334444444333 457999999999998765532         2578999999998887777766543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=88.13  E-value=7.7  Score=27.77  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=52.7

Q ss_pred             ccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccC
Q 041459           67 TGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRG  143 (225)
Q Consensus        67 cGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (225)
                      ||.|.++..+++   .....++.+|.+++.++.++..    +     +.+..++....     +.+...           
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~-----~~~i~gd~~~~-----~~l~~a-----------   58 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G-----VEVIYGDATDP-----EVLERA-----------   58 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T-----SEEEES-TTSH-----HHHHHT-----------
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c-----cccccccchhh-----hHHhhc-----------
Confidence            566666666543   2445799999999988777543    2     23555554332     111111           


Q ss_pred             CCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          144 ISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       144 ~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                        .-.+.+.+++...-+.....+....+.+.|...++..
T Consensus        59 --~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   59 --GIEKADAVVILTDDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             --TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             --CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence              3456888887665554444555566777788777764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=87.69  E-value=3.8  Score=35.30  Aligned_cols=100  Identities=27%  Similarity=0.400  Sum_probs=55.4

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+|+-.|+|. |..++.+++ .|...+++++-++...+.++.    .+..    .+........     +.+    
T Consensus       157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~----~~~~~~~~~~-----~~~----  219 (343)
T cd08236         157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD----DTINPKEEDV-----EKV----  219 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----EEecCccccH-----HHH----
Confidence            45678888887654 555555555 455558999888776665532    2321    1111100000     000    


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                              ........+|+++.+..-   ...+..+.+.|+++|.++..+
T Consensus       220 --------~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         220 --------RELTEGRGADLVIEAAGS---PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             --------HHHhCCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence                    001133459999865321   235667788899999987654

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=87.68  E-value=2  Score=37.06  Aligned_cols=100  Identities=22%  Similarity=0.364  Sum_probs=55.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+||-.|+|. |..++.+++ .+...+++++.++...+.+++.    +..    .+.......+.    +.     
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~----~~-----  227 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT----DIINPKNGDIV----EQ-----  227 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc----EEEcCCcchHH----HH-----
Confidence            45678888877653 555555555 4555788888888776665532    211    11111100010    00     


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                             +......+.+|+++......   ..+....+.|+++|.++..
T Consensus       228 -------i~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         228 -------ILELTGGRGVDCVIEAVGFE---ETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             -------HHHHcCCCCCcEEEEccCCH---HHHHHHHHHhhcCCEEEEE
Confidence                   01111345689998643221   3566777889999998754

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.67  E-value=5  Score=35.32  Aligned_cols=44  Identities=23%  Similarity=0.462  Sum_probs=33.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      ++++++||=.|+|. |.+++.+++ .|..+++++|.++..++.+++
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~  228 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK  228 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            45788999898865 555666665 466679999999988887754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=87.54  E-value=1.3  Score=42.34  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=26.0

Q ss_pred             CceeEEEecc--c-hh---HHHHHHHHHHHhccCCeEEEE
Q 041459          148 EKYDVVIANI--L-LN---PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       148 ~~~DvIi~~~--~-~~---~~~~~l~~~~~~LkpgG~l~~  181 (225)
                      ..+|+++.+.  | .+   +-.+++..+.++++|||++.-
T Consensus       165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence            4699999863  2 11   246789999999999999874

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=87.48  E-value=3  Score=37.77  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             cCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..|++|+=+|+|. |.....+++ .|+ +++++|.++.-+..|+.    .+..     ...  ...              
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~~-----~~~--~~e--------------  253 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGYE-----VMT--MEE--------------  253 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCCE-----Ecc--HHH--------------
Confidence            3689999999998 555554444 566 69999999987766653    2321     110  000              


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHH-HHHhccCCeEEEEeccC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADH-IVSYAKPGAVVGISGIL  185 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~  185 (225)
                                 .-...|+|+....-   ...+.. ..+.+|+||+++..+..
T Consensus       254 -----------~v~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         254 -----------AVKEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             -----------HHcCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeCCC
Confidence                       11347999875432   233443 47899999999876654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=87.20  E-value=8.2  Score=32.72  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             cEEEEcccc-cH-HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           61 LFLDYGTGS-GI-LGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        61 ~vlDiGcGt-G~-~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      +|.=+|+|. |. ++..+++.| .+|+.++.++..++..++    .++..+..... ......            +    
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~-~~~~~~------------~----   59 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNE----NGLRLEDGEIT-VPVLAA------------D----   59 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHH----cCCcccCCcee-ecccCC------------C----
Confidence            577788887 32 333455555 469999987766655443    23221000000 000000            0    


Q ss_pred             ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                          .......+|+|+...+......+++.+...+.++..++....+-.....+.
T Consensus        60 ----~~~~~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~  110 (304)
T PRK06522         60 ----DPAELGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELA  110 (304)
T ss_pred             ----ChhHcCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHH
Confidence                000125789999887766778888888888888877766444333333333

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=87.09  E-value=4.4  Score=34.98  Aligned_cols=50  Identities=18%  Similarity=0.005  Sum_probs=36.1

Q ss_pred             CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459          147 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  196 (225)
Q Consensus       147 ~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (225)
                      ...+|+|+...........++.+...+++++.++....+-...+.+.+.+
T Consensus        70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~  119 (313)
T PRK06249         70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREIL  119 (313)
T ss_pred             cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence            35689999877766667788888888999998877655555555555443

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=87.01  E-value=2  Score=37.65  Aligned_cols=101  Identities=15%  Similarity=0.134  Sum_probs=59.1

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec-CCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  132 (225)
                      +++|.+||=.|+ | .|.+++.+++.-..++++++.++...+.+++.   .+..    .+.... ...+.    +.+.  
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~----~vi~~~~~~~~~----~~i~--  222 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD----EAFNYKEEPDLD----AALK--  222 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC----EEEECCCcccHH----HHHH--
Confidence            567899999887 3 46777777764334689999888777666532   2322    111111 00110    0000  


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                .. ....+|+++-...-    ..+..+.+.|+++|.+++.+.
T Consensus       223 ----------~~-~~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        223 ----------RY-FPEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             ----------HH-CCCCcEEEEECCCH----HHHHHHHHHhccCCEEEEECc
Confidence                      11 12468999864431    356778889999999987544

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=86.86  E-value=4.1  Score=32.15  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP   91 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~   91 (225)
                      +++.+-+|...=-.-..+.++|+++++.+|.++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~   34 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNK   34 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecc
Confidence            566777776655555556678899999999866

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=86.83  E-value=1.9  Score=36.25  Aligned_cols=74  Identities=26%  Similarity=0.359  Sum_probs=48.0

Q ss_pred             HHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCcee
Q 041459           73 GIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYD  151 (225)
Q Consensus        73 ~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  151 (225)
                      +..+.+.+ ..+|+|.|.++..++.|.+    .++..    -...+.+                          .-..+|
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~----~~~~~~~--------------------------~~~~~D   47 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALE----LGIID----EASTDIE--------------------------AVEDAD   47 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSS----EEESHHH--------------------------HGGCCS
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCee----eccCCHh--------------------------HhcCCC
Confidence            44556655 5789999999999887753    23321    1110000                          123469


Q ss_pred             EEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459          152 VVIANILLNPLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       152 vIi~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (225)
                      +|+...|......+++++...+++|+++.
T Consensus        48 lvvlavP~~~~~~~l~~~~~~~~~~~iv~   76 (258)
T PF02153_consen   48 LVVLAVPVSAIEDVLEEIAPYLKPGAIVT   76 (258)
T ss_dssp             EEEE-S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred             EEEEcCCHHHHHHHHHHhhhhcCCCcEEE
Confidence            99999999999999999999999997664

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=86.81  E-value=1.1  Score=37.21  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=31.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +..+++|+.||+|.++..+.. ...+++.-|+++..+...+..+.
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence            578999999999999998765 45679999999988777764443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=86.57  E-value=3.3  Score=35.51  Aligned_cols=89  Identities=20%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             CcEEEEcccc--cHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGS--GILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGt--G~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+|+=+|.|-  |.++..+.+.|. ..+++.|.+...++.+..    .++..     ........               
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d-----~~~~~~~~---------------   59 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID-----ELTVAGLA---------------   59 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc-----ccccchhh---------------
Confidence            4677788775  355556666554 458999998877766652    23221     00000000               


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (225)
                              ......|+|+...|......+++++...|++|..+.
T Consensus        60 --------~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          60 --------EAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             --------hhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence                    034558999999999999999999999999996653

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=85.84  E-value=5.9  Score=34.35  Aligned_cols=113  Identities=13%  Similarity=0.089  Sum_probs=66.0

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++|+-+|+|. | .++..+++.| ..++.+-.++. ++..+++    |+.     +..........       ....   
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~-----i~~~~~~~~~~-------~~~~---   59 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLR-----IEDEGGNFTTP-------VVAA---   59 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeE-----EecCCCccccc-------cccc---
Confidence            3678899997 4 5566788888 55666665554 4444432    322     11111100000       0000   


Q ss_pred             cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                          ........+|+|+...--....+.++.+...+++...+++.-++-...+.+.....
T Consensus        60 ----~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~  115 (307)
T COG1893          60 ----TDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILP  115 (307)
T ss_pred             ----cChhhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCC
Confidence                00013457999998776677888999999999999988876555555554544443

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=85.83  E-value=15  Score=28.82  Aligned_cols=39  Identities=15%  Similarity=0.197  Sum_probs=30.6

Q ss_pred             CCCceeEEEeccchhH----------------HHHHHHHHHHhccCCeEEEEecc
Q 041459          146 ETEKYDVVIANILLNP----------------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ...+||.|+.|.|-..                +..++..+.++|+++|.+.++-.
T Consensus        72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~  126 (166)
T PF10354_consen   72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK  126 (166)
T ss_pred             cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            4678999999988422                34578889999999999998633

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=85.81  E-value=7.6  Score=33.04  Aligned_cols=46  Identities=15%  Similarity=0.049  Sum_probs=31.5

Q ss_pred             CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                      ..+|+|+...+-.....+++.+...+.++..++....+-.....+.
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~  112 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE  112 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH
Confidence            5689988877766677888888888888877665434433333333

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.75  E-value=3  Score=37.30  Aligned_cols=106  Identities=21%  Similarity=0.405  Sum_probs=59.9

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++++|+=.|+|. |.+++.+++ .|...++++|.++.-++.|++.    +..    .+.......+.    +.+.   
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~----~v~~~~~~~~~----~~v~---  247 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE----TVDLSKDATLP----EQIE---  247 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe----EEecCCcccHH----HHHH---
Confidence            45678887777765 555555555 5777677889888777777642    321    11111000110    0000   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               .......+|+++-......           ....++.+.+++++||.+++.+..
T Consensus       248 ---------~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       248 ---------QILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             ---------HHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence                     0112346899886433210           124677888899999999986654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=85.74  E-value=4.8  Score=35.01  Aligned_cols=43  Identities=33%  Similarity=0.589  Sum_probs=32.2

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      ++++.+|+=.|+|+ |..++.+++ .|. +++++|.++..++.+++
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            45688999999865 566666665 455 69999999988877754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=85.48  E-value=1.3  Score=41.30  Aligned_cols=41  Identities=24%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      ++.+++=+|+|. |..+..+++ .|+ .++++|.++..++.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            457999999997 566666555 565 49999999998777764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=85.38  E-value=6.2  Score=33.90  Aligned_cols=89  Identities=24%  Similarity=0.287  Sum_probs=55.2

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+|.=+|+|. | .++..+.+.+. .+++++|.++..++.+++    .+...   .. ..+...                
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~---~~-~~~~~~----------------   62 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD---RV-TTSAAE----------------   62 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc---ee-cCCHHH----------------
Confidence            5688888886 3 33334555554 479999999987766643    23210   00 000000                


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                               .....|+|+...|......++..+...++++.+++.
T Consensus        63 ---------~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         63 ---------AVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             ---------HhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence                     123579999988877777778888888899876543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=84.92  E-value=8.3  Score=32.78  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=56.4

Q ss_pred             ccCCCcEEEEcc--cccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGc--GtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+||=.|+  |.|..++.+++....++++++.++...+.+++    .+..    .+.......+.    +.+.   
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~----~vi~~~~~~~~----~~v~---  205 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD----AVFNYKTVSLE----EALK---  205 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHH----HHHH---
Confidence            457888888874  23666666666433468999988877777654    2322    11111111110    1110   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               .. ....+|+|+-...    ...+....+.|+++|.++..
T Consensus       206 ---------~~-~~~gvd~vld~~g----~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         206 ---------EA-APDGIDCYFDNVG----GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             ---------HH-CCCCcEEEEECCC----HHHHHHHHHhhccCCEEEEE
Confidence                     11 1256899985332    13467788899999998764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=84.51  E-value=2.7  Score=36.90  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=58.2

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC-CCCcccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR-TFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  132 (225)
                      ++++.+||=.|+|. |.+++.+++ .|..+++++|.++.-++.+++    .+..   ..+...+.+ .+    .+.+.. 
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~----~~~v~~-  251 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPI----QQVLVE-  251 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHH----HHHHHH-
Confidence            45788999888754 455555555 466579999999988877753    2322   111111000 00    011111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEeccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  185 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  185 (225)
                                 . ..+.+|+|+-...-   ...+..+.+.++++ |.++..+..
T Consensus       252 -----------~-~~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         252 -----------M-TDGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             -----------H-hCCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEccC
Confidence                       1 12368999864321   23566677889887 888875543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=83.84  E-value=9.8  Score=33.33  Aligned_cols=44  Identities=30%  Similarity=0.543  Sum_probs=31.4

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      ++++.+|+=.|+|. |.+++.+++ .|..+++++|.++.-++.+++
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~  227 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE  227 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            45788898888754 445555555 466679999999888777753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=83.47  E-value=33  Score=30.74  Aligned_cols=97  Identities=14%  Similarity=0.023  Sum_probs=63.1

Q ss_pred             cEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccccc
Q 041459           61 LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHE  140 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (225)
                      .|+-++=.-|.++..++..+..  ...|. -..-...++|+..+++..+.+...  +...-                   
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~~--~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~-------------------  102 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKPY--SIGDS-YISELATRENLRLNGIDESSVKFL--DSTAD-------------------  102 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCCC--eeehH-HHHHHHHHHHHHHcCCCcccceee--ccccc-------------------
Confidence            7899999999999988854332  22331 223334578888888764434333  11110                   


Q ss_pred             ccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          141 IRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       141 ~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                           ....+|+|+.-.|-.  .....+..+...|.||+.++..+...
T Consensus       103 -----~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k  145 (378)
T PRK15001        103 -----YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKAR  145 (378)
T ss_pred             -----ccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence                 245589999877753  45567888999999999988755443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.93  E-value=26  Score=29.65  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             cEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH-------hcC-CCCCcc-----eEEEecCCCCCccc
Q 041459           61 LFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA-------LNN-IGPKKM-----KLHLVPDRTFPASM  125 (225)
Q Consensus        61 ~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~-------~~~-~~~~~~-----~~~~~~~~~~~~~~  125 (225)
                      +|.=+|+|.  +.++..++..+. +++++|.+++.++.+++.+.       ..+ +.....     .+.....       
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~-------   76 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD-------   76 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC-------
Confidence            466778876  244445556654 69999999999877654332       122 110000     0000000       


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  196 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (225)
                                        .......|+|+...+-.  .-..++.++.+.++++.++ .+....-....+.+.+
T Consensus        77 ------------------~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~~la~~~  130 (282)
T PRK05808         77 ------------------LDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSITELAAAT  130 (282)
T ss_pred             ------------------HHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHHhh
Confidence                              00124579998876533  2357888888889988766 4444444444555444

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=82.81  E-value=12  Score=32.81  Aligned_cols=44  Identities=27%  Similarity=0.538  Sum_probs=31.5

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      +++|.+||=.|+|. |.+++.+++ .|..++++++.++..++.+++
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~  230 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK  230 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            55788998888754 444555555 466579999999988877753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=82.65  E-value=7.9  Score=32.81  Aligned_cols=84  Identities=20%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             cEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           61 LFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        61 ~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      +|.=+|+|.  |.++..+.+.+ .+|+++|.++..++.+...    +..    .....+.+                   
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~----g~~----~~~~~~~~-------------------   53 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIER----GLV----DEASTDLS-------------------   53 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHC----CCc----ccccCCHh-------------------
Confidence            455677775  24444555555 4699999999887776532    211    00000000                   


Q ss_pred             ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEE
Q 041459          139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV  179 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l  179 (225)
                             .....|+|+...|......+++.+...++++.++
T Consensus        54 -------~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         54 -------LLKDCDLVILALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             -------HhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence                   1235799999988887778888888888877544

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=82.65  E-value=14  Score=33.08  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=33.2

Q ss_pred             ccCCCcEEEEc-ccc-cHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHH
Q 041459           56 IKGGELFLDYG-TGS-GILGIAAIKF---GAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        56 ~~~~~~vlDiG-cGt-G~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      ++++.+|+=+| +|. |.+++.+++.   +..+++++|.++.-++.+++.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~  222 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL  222 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence            45678888886 453 6667666664   345799999999998888764

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=82.62  E-value=33  Score=31.04  Aligned_cols=49  Identities=12%  Similarity=0.071  Sum_probs=32.5

Q ss_pred             ceeEEEeccch----------hHHHHHHHHHHHhccCCeEEEEe-ccCCCcHHHHHHHHH
Q 041459          149 KYDVVIANILL----------NPLLQLADHIVSYAKPGAVVGIS-GILSEQLPHIINRYS  197 (225)
Q Consensus       149 ~~DvIi~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~  197 (225)
                      ..|+|+.+.+-          ......++.+.+.+++|.+++.. +........+...+.
T Consensus        75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~  134 (415)
T PRK11064         75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA  134 (415)
T ss_pred             cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            57888886554          34566778888999999887764 334445555554444

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=82.32  E-value=6.2  Score=33.88  Aligned_cols=95  Identities=21%  Similarity=0.258  Sum_probs=54.7

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+||-.|||. |..++.+++ .|...+++++.++...+.+++.    +..    .+.......+        ...   
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~----~vi~~~~~~~--------~~~---  225 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD----ETVNLARDPL--------AAY---  225 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC----EEEcCCchhh--------hhh---
Confidence            678888888764 555555555 4665799999888877755432    221    0110000000        000   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              ......+|+++.....   ...+..+.+.|+++|.++..
T Consensus       226 --------~~~~~~vd~vld~~g~---~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         226 --------AADKGDFDVVFEASGA---PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             --------hccCCCccEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence                    0022358999865432   23456778899999998864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.84  E-value=29  Score=29.36  Aligned_cols=90  Identities=18%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|+=.|+|. |..++.+++ .|.. +++++.+++..+.+++    .+...    ...... ..            
T Consensus       153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~-vi~~~~~~~~~~~~~~----~g~~~----~~~~~~-~~------------  210 (319)
T cd08242         153 ITPGDKVAVLGDGKLGLLIAQVLALTGPD-VVLVGRHSEKLALARR----LGVET----VLPDEA-ES------------  210 (319)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHH----cCCcE----EeCccc-cc------------
Confidence            45678888887543 333444444 4555 8999998888877764    23220    110000 00            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                  ....+|+++....-   ...+..+.+.|+++|.++..
T Consensus       211 ------------~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         211 ------------EGGGFDVVVEATGS---PSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             ------------cCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence                        34568999864321   23456667788999988763

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=81.80  E-value=4.5  Score=35.05  Aligned_cols=102  Identities=19%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|+=.|+|. |.+++.+++ .|..++++++.++...+.+++    .+..   . +.......+    .+.+... 
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~---~-~i~~~~~~~----~~~l~~~-  236 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT---I-VLDPTEVDV----VAEVRKL-  236 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---E-EECCCccCH----HHHHHHH-
Confidence            45678888887643 444444554 466579999988888777743    2321   0 111000011    0111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 .....+|+++-+...   ...+..+.+.|+++|.++..+.
T Consensus       237 -----------~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         237 -----------TGGGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             -----------hCCCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence                       123459999865432   2345677789999999886543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=81.75  E-value=4.7  Score=34.54  Aligned_cols=98  Identities=10%  Similarity=0.074  Sum_probs=50.6

Q ss_pred             CCCcEEEE--cccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDY--GTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDi--GcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+..++=+  |+|. |.+++.+++....++++++.++...+.+++    .+..    .+.......+.    +.+..   
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~----~~v~~---  206 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE----YVLNSSDPDFL----EDLKE---  206 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc----EEEECCCccHH----HHHHH---
Confidence            34455544  4433 555555666433468999999887777754    2322    11111111110    11111   


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                               ......+|+++....-.    .+....+.++++|.++...
T Consensus       207 ---------~~~~~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         207 ---------LIAKLNATIFFDAVGGG----LTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             ---------HhCCCCCcEEEECCCcH----HHHHHHHhhCCCCEEEEEE
Confidence                     11334689998643322    2344567789999987744

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=81.62  E-value=1.9  Score=34.62  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhccCCeEEEEecc
Q 041459          162 LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      +...+..+.++|||||.+++.+-
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~~~   57 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIFID   57 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             HHHHHHHHHhhcCCCeeEEEEec
Confidence            45678999999999999988643

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=80.91  E-value=2.4  Score=35.20  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=44.4

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      .+.|+++|.|.|.++..+...+..+...+|+++..+.-.+...+...   .++.++..|.
T Consensus        51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~  107 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDV  107 (326)
T ss_pred             cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEecccc
Confidence            46899999999999999999999999999999988877776555333   2345555443

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=80.85  E-value=11  Score=33.98  Aligned_cols=109  Identities=23%  Similarity=0.316  Sum_probs=64.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH-------hcCCCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +.+++...|+|.|-|.+...++. .+...-+|+++.+..-+.|..+..       ..|-.+..  .....+...+.   +
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~--~~~i~gsf~~~---~  264 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNK--IETIHGSFLDP---K  264 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCc--eeecccccCCH---H
Confidence            45788999999999988777555 456667899987776666655443       22222222  22222322221   1


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccc-hhH-HHHHHHHHHHhccCCeEEEEec
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANIL-LNP-LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-~~~-~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      ....              -....++|++|.. +++ +..-+..+..-+++|-.++=+.
T Consensus       265 ~v~e--------------I~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~  308 (419)
T KOG3924|consen  265 RVTE--------------IQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSK  308 (419)
T ss_pred             HHHH--------------HhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccc
Confidence            1111              1345788888644 443 2222557888889998887543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=80.80  E-value=10  Score=30.24  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=24.4

Q ss_pred             ceeEEEeccc----------hhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          149 KYDVVIANIL----------LNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       149 ~~DvIi~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ..|+++...+          +..+...++.+.+.++++.++++...
T Consensus        76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence            4687777433          23467789999999999988888433

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=80.63  E-value=11  Score=34.71  Aligned_cols=109  Identities=17%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             CCCcEEEEcccccH--HHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGI--LGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~--~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..+.++|+|.|.|.  .+...+ +.....++.||.+..|......+... +-.+..+.+..  ....     +....   
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~--~~~~-----r~~~p---  268 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRK--LVFH-----RQRLP---  268 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccc--cchh-----cccCC---
Confidence            45788888888663  333322 33467799999999999999888754 21111111111  0000     00000   


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHH------HH-HHHHHHHhccCCeEEEEeccCC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPL------LQ-LADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~-~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                               +.....||++++...+.+.      .. .-+...+...+|+.+++..-+.
T Consensus       269 ---------i~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  269 ---------IDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             ---------CCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence                     0034569999997665431      12 2344557788999988865544

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=80.60  E-value=35  Score=29.05  Aligned_cols=109  Identities=10%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHh----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK----F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~----~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      ..+..++|+|+|+..-+..+..    . ...+++.+|++...++...+.+......   +.+...-+ .+.    .-+  
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~---l~v~~l~~-~~~----~~L--  146 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG---LEVNALCG-DYE----LAL--  146 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC---CeEeehhh-hHH----HHH--
Confidence            3578999999999866655432    2 3478999999999888765555422211   22221111 100    000  


Q ss_pred             cccccccccccCCCCCCceeEEEe-----ccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIA-----NILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ......++==+++.     |.....-..++.++...+.||.++.+....
T Consensus       147 ----------a~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl  195 (321)
T COG4301         147 ----------AELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL  195 (321)
T ss_pred             ----------hcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence                      00001111111222     333444566889999999999999885433

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=80.54  E-value=4.7  Score=34.18  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc------CCCeEEEEeCCH
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF------GAAMSVGVDIDP   91 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~------~~~~v~~vDi~~   91 (225)
                      +.+...++|+|||.|.++.+++..      +...++.||...
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            456779999999999999987752      346799999855

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=80.50  E-value=16  Score=34.73  Aligned_cols=94  Identities=11%  Similarity=0.008  Sum_probs=51.9

Q ss_pred             CcEEEEcccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ..|+=+|+|  .++..+++   .....++.+|.|++.++.+++    .+     .....+|+...     +.+..-    
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~-----~~L~~a----  460 (601)
T PRK03659        401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQL-----ELLRAA----  460 (601)
T ss_pred             CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCH-----HHHHhc----
Confidence            356655555  44444332   223459999999998887753    23     23566665432     111111    


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               .-++.|.+++...-+.-...+....+.+.|...++..
T Consensus       461 ---------gi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        461 ---------GAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR  497 (601)
T ss_pred             ---------CCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence                     3456788777555443333344445556777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3grz_A	205	Crystal Structure Of Ribosomal Protein L11 Methylas		4e-18
1ufk_A	254	Crystal Structure Of Tt0836 Length = 254		2e-13
3cjt_A	254	Ribosomal Protein L11 Methyltransferase (prma) In C		2e-12

>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From Lactobacillus Delbrueckii Subsp. Bulgaricus Length = 205

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 3   FHPVEVTKGLWIVPEWST-PPDVQATNII-LNPGLAFGTGEHATTKXXXXXXXXXIKGGE 60
           +H + +++ L IVPEW    P  +   II L+PGLAFGTG H TT+         +    
Sbjct: 3   YHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPL 62
Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
              D GTGSGIL IAA K GA   +  DI  +++ +A +NAALN I    ++        
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQ-------- 114
Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
              S+   VDG                 K+D+++ANIL   LL L   + S+      V 
Sbjct: 115 -KTSLLADVDG-----------------KFDLIVANILAEILLDLIPQLDSHLNEDGQVI 156
Query: 181 ISGILSEQLPHIINRYSE 198
            SGI   QLP I    +E
Sbjct: 157 FSGIDYLQLPKIEQALAE 174

>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836 Length = 254

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 29  IILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVD 88
           +++ PG+AFGTG H TT+         ++ G+  LD GTGSG+L IAA K G   ++GVD
Sbjct: 91  LVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVD 149
Query: 89  IDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETE 148
           IDP  +  A  NA  N + P+ ++  L     F                           
Sbjct: 150 IDPMVLPQAEANAKRNGVRPRFLEGSLEAALPF--------------------------G 183
Query: 149 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHI 192
            +D+++AN+       LA        PG    ++GIL ++ P +
Sbjct: 184 PFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLV 227

>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Dimethylated Ribosomal Protein L11 Length = 254

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 29  IILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVD 88
           +++ PG+AFGTG   TT+         ++ G+  LD GTGSG+L IAA K G   ++GVD
Sbjct: 91  LVIEPGMAFGTGHAETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVD 149
Query: 89  IDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETE 148
           IDP  +  A  NA  N + P+ ++  L     F                           
Sbjct: 150 IDPMVLPQAEANAKRNGVRPRFLEGSLEAALPF--------------------------G 183
Query: 149 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHI 192
            +D+++AN+       LA        PG    ++GIL ++ P +
Sbjct: 184 PFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLV 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	3e-78
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	8e-70
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	9e-25
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	1e-14
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	6e-12
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	7e-10
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	6e-09
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-08
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	2e-08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	2e-08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	6e-08
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	1e-07
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	2e-07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	2e-07
3lpm_A	259	Putative methyltransferase; structural genomics, p	4e-07
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	5e-07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	6e-07
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	6e-07
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	6e-07
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	2e-06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	3e-06
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	3e-06
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-06
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	5e-06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	6e-06
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	6e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	8e-06
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	2e-05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	2e-05
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	2e-05
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	3e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	3e-05
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-05
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	4e-05
2h00_A	254	Methyltransferase 10 domain containing protein; st	4e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	6e-05
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	6e-05
2b3t_A	276	Protein methyltransferase HEMK; translation termin	6e-05
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	7e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	8e-05
2frn_A	278	Hypothetical protein PH0793; structural genomics,	8e-05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	1e-04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	1e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-04
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	1e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	1e-04
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	2e-04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	2e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	3e-04
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	3e-04
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	4e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	4e-04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	6e-04
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	6e-04
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	7e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	8e-04
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	9e-04

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score =  232 bits (595), Expect = 3e-78
 Identities = 69/226 (30%), Positives = 101/226 (44%), Gaps = 29/226 (12%)

Query: 3   FHPVEVTKGLWIVPEW--STPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
           +H + +++ L IVPEW    P       I L+PGLAFGTG H TT+L +L ++  +    
Sbjct: 3   YHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPL 62

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
              D GTGSGIL IAA K GA   +  DI  +++ +A +NAALN I    ++   +    
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA-- 120

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
                                       K+D+++ANIL   LL L   + S+      V 
Sbjct: 121 ------------------------DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVI 156

Query: 181 ISGILSEQLPHIINRYSE-FLEDILLSEMDDWTCVSGTKKRAKEDH 225
            SGI   QLP I    +E   +  L      W  ++ ++K     H
Sbjct: 157 FSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRKHEGHHH 202

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score =  213 bits (544), Expect = 8e-70
 Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 30/219 (13%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
               P        ++  W T        +++ PG+AFGTG H TT+L L  L   ++ G+
Sbjct: 65  RDLKPALAPP-FVVLAPWHTWEG-AEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGD 122

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             LD GTGSG+L IAA K G   ++GVDIDP  +  A  NA  N           V  R 
Sbjct: 123 KVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEANAKRNG----------VRPRF 171

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
              S+   +                    +D+++AN+       LA        PG    
Sbjct: 172 LEGSLEAAL----------------PFGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

Query: 181 ISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTK 218
           ++GIL ++ P +    +      +  +   +W  ++  +
Sbjct: 216 LTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 95.9 bits (238), Expect = 9e-25
 Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 33/163 (20%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS 96
           + T         + +      GG   +D GTG+GIL   +   GA      DIDP AI++
Sbjct: 30  YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 89

Query: 97  AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
           A +N    N                       +   V ++S           KYD  I N
Sbjct: 90  AKRNCGGVNF----------------------MVADVSEIS----------GKYDTWIMN 117

Query: 157 ILLNPLLQLAD-HIVSYAKPGAVVGISGILSEQLPHIINRYSE 198
                +++ +D   +  A   ++   S   ++    +   +S 
Sbjct: 118 PPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSA 160

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 69.3 bits (169), Expect = 1e-14
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 31/170 (18%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS 96
           + T  +A ++L  L        G++  D G G+G+L   A+  GA   + V++D +A+  
Sbjct: 28  YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV 87

Query: 97  AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
             +N         K K+ +     F                           + D+VI N
Sbjct: 88  LIENLGEFKG---KFKVFIGDVSEFN-------------------------SRVDIVIMN 119

Query: 157 ILLNPLLQLAD--HIVSYAKPGAVV-GISGILSEQLPHIINRYSEFLEDI 203
                  + AD   ++   +   VV  I     E    I     E    +
Sbjct: 120 PPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVV 169

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 61.2 bits (149), Expect = 6e-12
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 26/152 (17%)

Query: 47  LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
           L + L +      ++ +D G G+G + +        +   +D +P+AI +   N   + +
Sbjct: 24  LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRRV-YAIDRNPEAISTTEMNLQRHGL 80

Query: 107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLA 166
           G     + L+                           + +    D+ +       L ++ 
Sbjct: 81  GDN---VTLMEGDA--------------------PEALCKIPDIDIAVVGGSGGELQEIL 117

Query: 167 DHIVSYAKPGAVVGISGILSEQLPHIINRYSE 198
             I    KPG  + ++ IL E     +    +
Sbjct: 118 RIIKDKLKPGGRIIVTAILLETKFEAMECLRD 149

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 56.0 bits (136), Expect = 7e-10
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG 107
            + L++ ++GGE+ L+ GTG   +    A KF        ++D +  + A +N   NN  
Sbjct: 46  YIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSN 105

Query: 108 PKKMKLHLVPDRTFPASMNERVDGIV 133
              ++L           +    D I 
Sbjct: 106 ---VRLVKSNGGIIKGVVEGTFDVIF 128

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 50  LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP 108
           +L++++ +   +  LD G G G++GIA      +     DI+ +AIK A +N  LNN+  
Sbjct: 43  ILVENVVVDKDDDILDLGCGYGVIGIALADEVKST-TMADINRRAIKLAKENIKLNNLDN 101

Query: 109 KKMKLHL------VPDRTF 121
             +++        V DR +
Sbjct: 102 YDIRVVHSDLYENVKDRKY 120

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 15/157 (9%), Positives = 42/157 (26%), Gaps = 10/157 (6%)

Query: 56  IKGGELFLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH 114
                   D G G+G  G+A A +   A     +   +  + A ++  L +      ++ 
Sbjct: 34  DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93

Query: 115 LV--------PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLA 166
           ++          R      +E    ++ +   ++       +        +         
Sbjct: 94  VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWI 153

Query: 167 DHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDI 203
               +    G  + +     + +  II         +
Sbjct: 154 RTASAIMVSGGQLSLI-SRPQSVAEIIAACGSRFGGL 189

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIG 107
           L  + S I   E   D G+    L   A+K   A      ++     +SA +    + + 
Sbjct: 12  LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT 71

Query: 108 PKKMKLHLVPDRTFPASMNERVDGIV 133
            +++ +    +        + +D IV
Sbjct: 72  -EQIDVRKG-NGLAVIEKKDAIDTIV 95

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIG 107
           L  + + +  G   LD G+    L I  ++ G        ++     +SA +N + + + 
Sbjct: 12  LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT 71

Query: 108 PK 109
            K
Sbjct: 72  SK 73

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIG 107
           L L+ S +  G + LD G+    L I  ++ G   S    ++     +SA +N   + + 
Sbjct: 6   LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK 65

Query: 108 PK 109
            K
Sbjct: 66  EK 67

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
           L  +  ++     L+  + +G   ++A+  G +  V VD   +A+  A QN  LN +   
Sbjct: 213 LATRRYVENKR-VLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL- 270

Query: 110 KMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVI 154
                             + + + +D+           EK+DV++
Sbjct: 271 -----------------SKAEFVRDDVFKLLRTYRDRGEKFDVIV 298

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG 107
           L +L+     G   LD G   G L ++ A K+G +  VG+DID + I SA QN       
Sbjct: 37  LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSE 96

Query: 108 PKKMKLHLVPDRTFPASMN 126
             ++    +          
Sbjct: 97  ELRLPPQTLEGDPGAEGEE 115

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
            L+  ++ G+  LD  T +G   I A   GA   +G+D  P+AI++A +NA LN +  +
Sbjct: 210 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDR 268

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           +D  +G+GI+ +       A  VGV+I  +    A ++ A N +  +   +     +   
Sbjct: 54  IDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD 113

Query: 123 ASMNERVDGIV 133
               ER D + 
Sbjct: 114 LIPKERADIVT 124

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 17  EWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL----FLDYGTGSGIL 72
            +S             PG+         + L L  LQ  +    +     LD G G G L
Sbjct: 188 AFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGAL 247

Query: 73  GIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
            +   + GA + VGV+ D  ++ S  +    N +
Sbjct: 248 TLPLARMGAEV-VGVEDDLASVLSLQKGLEANAL 280

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 25/123 (20%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
           +D G G G L    +K      + GVD+  ++++ A +      +   +           
Sbjct: 34  IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ----------- 82

Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPG 176
                ER+  I   L+  + R       YD      ++       L      +  +A+P 
Sbjct: 83  ----WERLQLIQGALTYQDKRF----HGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK 134

Query: 177 AVV 179
            V+
Sbjct: 135 IVI 137

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 25/123 (20%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 121
           +D G G G L    +K  +   + GVD+    ++ A              K  L  DR  
Sbjct: 34  IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA--------------KDRLKIDR-L 78

Query: 122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPG 176
           P    +R+      L   +         YD      ++       L      +  + +P 
Sbjct: 79  PEMQRKRISLFQSSLVYRD----KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ 134

Query: 177 AVV 179
            V+
Sbjct: 135 TVI 137

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 50  LLLQSLIKG-GELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNI 106
           LLL +L        LD G G+G+L +A  +    + +   D+   A++++    A N +
Sbjct: 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV 245

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 33/108 (30%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK 110
           L +++++ GE  LD  +  G   + A + GA  ++ VD D +A+    Q A    +    
Sbjct: 207 LFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL---- 261

Query: 111 MKLHLVPDRTFPASMNERVDGIVED----LSSHEIRGISETEKYDVVI 154
                            RVD    +    L   E         +  V+
Sbjct: 262 -----------------RVDIRHGEALPTLRGLE-------GPFHHVL 285

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 26/148 (17%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS 96
            G G    T   L  + +L +   +  D G G+G   +           G+D     I  
Sbjct: 26  QGPGSPEVTLKALSFIDNLTEKSLI-ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDI 84

Query: 97  AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
            ++NA  +           + +R         + G ++DL           E+ D++ + 
Sbjct: 85  FNRNARQSG----------LQNRV------TGIVGSMDDLP-------FRNEELDLIWSE 121

Query: 157 -ILLNPLLQLA-DHIVSYAKPGAVVGIS 182
             + N   +   +    Y K G  + +S
Sbjct: 122 GAIYNIGFERGLNEWRKYLKKGGYLAVS 149

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 51  LLQSLIKGGELFLD---YGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG 107
           L+     G    L+   Y T +    +AA   GA  +  VD+  ++   +  +   N++ 
Sbjct: 206 LINGSAAGKT-VLNLFSY-TAA--FSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD 261

Query: 108 PKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVI 154
                                   +V D+  +          YD++I
Sbjct: 262 M------------------ANHQLVVMDVFDYFKYARRHHLTYDIII 290

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 33/173 (19%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP 108
           +L    ++K G+  LD G G+G   +     G  +    D +  +I +  +  ++ N+  
Sbjct: 24  VLEAVKVVKPGKT-LDLGCGNGRNSLYLAANGYDV-DAWDKNAMSIANVERIKSIENL-- 79

Query: 109 KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLL 163
                             + +   V DL++          +YD +++ ++L       + 
Sbjct: 80  ------------------DNLHTRVVDLNNLTF-----DRQYDFILSTVVLMFLEAKTIP 116

Query: 164 QLADHIVSYAKPGAVVGISGILS-EQLPHIINRYSEFLEDILLSEMDDWTCVS 215
            L  ++    KPG    I   +     P  +     F E  L    + W  V 
Sbjct: 117 GLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVK 169

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 45.6 bits (107), Expect = 5e-06
 Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 18/128 (14%)

Query: 56  IKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH 114
           +   +LF+D G+G G ++   A         GV+      K A           K MK +
Sbjct: 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFR---KWMKWY 227

Query: 115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVV-IANILLNPLL--QLADHIVS 171
                               D  S E R         V+ + N    P +  QL +   +
Sbjct: 228 GKKHA--------EYTLERGDFLSEEWR--ERIANTSVIFVNNFAFGPEVDHQLKERFAN 277

Query: 172 YAKPGAVV 179
             K G  +
Sbjct: 278 M-KEGGRI 284

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
               ++ +D   G G   I     G  + + +DIDP  I  A  NA +  I
Sbjct: 76  SFKCDVVVDAFCGVGGNTIQFALTGMRV-IAIDIDPVKIALARNNAEVYGI 125

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 62  FLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
             D GTGSG +G++  KF  A+    D+  +A++ A +NA  + +
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV 171

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 25/124 (20%)

Query: 63  LDYGTGSGILGIAAIKFGAAMS--VGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
           +D+G GSG L  + + +  ++   +GVDI P+ +  A +               L     
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK--------------MLHVKLN 771

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKP 175
             A   +        +   + R        D+     ++         +  + ++S   P
Sbjct: 772 KEACNVKSATLYDGSILEFDSRL----HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP 827

Query: 176 GAVV 179
             ++
Sbjct: 828 KLLI 831

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 22/96 (22%)

Query: 62  FLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
            +D GTGSG + ++ A+         VD+   A+  A +NA                   
Sbjct: 34  VIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------------- 79

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
                   VD    D     I        +  +++N
Sbjct: 80  -------VVDWAAADGIEWLIERAERGRPWHAIVSN 108

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 50  LLLQSLIKG-GELFLDYGTGSGILGIAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIG 107
             +Q L +      +D G G+G++G+  +       V  VD  P A+ S+  N   N   
Sbjct: 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 272

Query: 108 PKKMKLHLVPDRTFPASMNERVDGIV 133
               +   + +         R + ++
Sbjct: 273 ALD-RCEFMINNALSGVEPFRFNAVL 297

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 45  TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN 104
           T   +  L+      ++ LD GT +G++     K      V  D++ +A++S      + 
Sbjct: 10  TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRK--RNTVVSTDLNIRALESHRGGNLVR 67

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 14  IVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILG 73
           IVPE           +  NP +           L L  L   +       D  + SGI  
Sbjct: 12  IVPEIPKTVSSDMP-VFYNPRMRV---NRDLAVLGLEYLCKKLGRPVKVADPLSASGIRA 67

Query: 74  I-AAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGPKKMKLH 114
           I   ++          DI  +AI+   +N  LNNI   + ++H
Sbjct: 68  IRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIH 110

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 44  TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL 103
              +    L  ++    + +D   G+G    A +   +      D+  QA+    Q  + 
Sbjct: 8   PIHMSHDFLAEVLDDESIVVDATMGNGND-TAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66

Query: 104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL 136
              G +  +L L         + E +   + +L
Sbjct: 67  L--GIENTELILDGHENLDHYVREPIRAAIFNL 97

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 32/153 (20%)

Query: 40  GEHATTKLCLLLLQSLIKGGELFLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSA 97
                       LQ  ++ G +      G    +L +          VG+D DP+A+  A
Sbjct: 100 ATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGA 159

Query: 98  HQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANI 157
            + AA +                    +  ++    +D        +   E YD++ +N 
Sbjct: 160 TRLAAGHA-------------------LAGQITLHRQD-----AWKLDTREGYDLLTSNG 195

Query: 158 LLN------PLLQLADHIVSYAKPGAVVGISGI 184
           L         + +L        KPG  +  S +
Sbjct: 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGILGI--AAIKFGAAMSVGVDIDPQAIKSAHQ 99
                  LL L +  + G   LD  TGSG + +  A+     +     D+D + +  A +
Sbjct: 188 TPVLAQALLRL-ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246

Query: 100 NAA---LNNIGPKKMKLHLVPDRTFPASMNERVDGIV 133
            A    L+ I   +     +P           VD I+
Sbjct: 247 AALASGLSWIRFLRADARHLPRFF------PEVDRIL 277

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 18/97 (18%)

Query: 61  LFLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 119
             +D GTG+  +             +  ++D      A +N   NN+    +K+  VP +
Sbjct: 68  RGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQK 126

Query: 120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
           T         D + E+              YD  + N
Sbjct: 127 TLLM------DALKEE----------SEIIYDFCMCN 147

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102
           LL   +K     LD   G G        +G  + VGVDI    I+ A + A 
Sbjct: 31  LLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEV-VGVDISEDMIRKAREYAK 81

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 26/174 (14%)

Query: 56  IKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA-----LNNIGPK 109
           +K G+ F+D G+G G  +  AA++ G A+S G +I   A                  G +
Sbjct: 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 299

Query: 110 KMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLAD 167
              +     ++F    N RV  ++                 DV++ N  L    L +  +
Sbjct: 300 LNNVEFSLKKSF--VDNNRVAELIPQ--------------CDVILVNNFLFDEDLNKKVE 343

Query: 168 HIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWT--CVSGTKK 219
            I+  AK G  +     L      I     E + + L  +  D     VS T  
Sbjct: 344 KILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHS 397

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 63  LDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
           LD GTG+G + +A A +      + VD  P A+  A +NA    I
Sbjct: 114 LDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI 158

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 13/76 (17%)

Query: 56  IKGGELFLDYGTGSGILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG------- 107
           +   ++ +D G GSG + +  A +        +D    AI+   QN A  NI        
Sbjct: 33  LNKDDVVVDVGCGSGGMTVEIAKRCKFV--YAIDYLDGAIEVTKQNLAKFNIKNCQIIKG 90

Query: 108 --PKKMKLHLVPDRTF 121
                +   L  ++ F
Sbjct: 91  RAEDVLD-KLEFNKAF 105

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101
           H    +   LL+ + K  +  LD G  SG LG A  + G  +  G++  P+A + A +  
Sbjct: 16  HYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRV-SGIEAFPEAAEQAKEKL 74

Query: 102 ALNNIGPKKMKLHLVPDRTF 121
               +G  +       +  F
Sbjct: 75  DHVVLGDIETMDMPYEEEQF 94

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 25/139 (17%)

Query: 52  LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM 111
           +  + K  EL +D   G G L +    +G A  + ++ DP   K   +N  LN +     
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----- 173

Query: 112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS 171
                          +R+     D      R        D ++    +    +     +S
Sbjct: 174 --------------EDRMSAYNMD-----NRDFPGENIADRILMG-YVVRTHEFIPKALS 213

Query: 172 YAKPGAVVGISGILSEQLP 190
            AK GA++     + E+L 
Sbjct: 214 IAKDGAIIHYHNTVPEKLM 232

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 6/158 (3%)

Query: 21  PPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG 80
           P     +++ +   L+    E ++  +        I+ G   +D   G GI  IA +   
Sbjct: 59  PQWAGISSLYIPSRLSL---EQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKA 115

Query: 81  AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN-ERVDGIVEDLSSH 139
           +   + ++ + +   +A  N  L     K + +     + +   +     D I  D +  
Sbjct: 116 SQG-IYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARR 174

Query: 140 EIRGISETEKYDVVIANI-LLNPLLQLADHIVSYAKPG 176
                      D     I L   LL     I++   P 
Sbjct: 175 SGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPM 212

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 21/96 (21%)

Query: 59  GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118
           GE  LD  + +G   +     G    V VD   +A++ A +NA LN +G           
Sbjct: 210 GERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG----------- 257

Query: 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVI 154
                     V  +  +      R   E E++D+V+
Sbjct: 258 ---------NVRVLEANAFDLLRRLEKEGERFDLVV 284

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 12/142 (8%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGIL-GIAAIKFGAAMSV-GVDIDPQAIKSAHQ 99
             +       ++  +K G+  +D   G+G      A   G    V G DI  +AI +  +
Sbjct: 6   KNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK 65

Query: 100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL 159
                N+   ++ L     +     ++  V  ++ +L        S + + +  I  +  
Sbjct: 66  KLTDLNL-IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQAL-- 122

Query: 160 NPLLQLADHIVSYAKPGAVVGI 181
                     +     G ++ +
Sbjct: 123 -------SKAMELLVTGGIITV 137

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 41  EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN 100
           +  +    +   +  +K     LD G G G       + G    VGVDI    I+   + 
Sbjct: 36  DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKA-VGVDISEVMIQKGKER 94

Query: 101 AALNNI 106
               ++
Sbjct: 95  GEGPDL 100

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 56  IKGGELFLDYGTGSGILG-IAAIKFGAAMSV-GVDIDPQAIKSAHQNAALNNIGPKKMKL 113
              G   LD G G+G    +A+   G    V GVD+    ++ A +    +    K    
Sbjct: 81  SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYH--AEKFFGS 138

Query: 114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN---PLLQLADHIV 170
               +  F       + G +E+L++ E  G+ +    D+VI+N + N     L L   I 
Sbjct: 139 PSRSNVRF-------LKGFIENLATAEPEGVPD-SSVDIVISNCVCNLSTNKLALFKEIH 190

Query: 171 SYAKPGAVVGISGILS 186
              + G  +  S + +
Sbjct: 191 RVLRDGGELYFSDVYA 206

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%)

Query: 49  LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
            L   +     +  LD G G  +  ++        + G++I    +K A   +  NN 
Sbjct: 14  FLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF 71

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
            L         + +DYG G+G      ++F   +   +DI+  A+K   +    +++   
Sbjct: 9   YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKL-YCIDINVIALKEVKEK--FDSVITL 65

Query: 110 KMKLHLVPDRTF 121
                + PD + 
Sbjct: 66  SDPKEI-PDNSV 76

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 34/166 (20%)

Query: 55  LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH 114
           +I   ++ LD G G G   +     G  +    D +  +I   ++     N+        
Sbjct: 118 IISPCKV-LDLGCGQGRNSLYLSLLGYDV-TSWDHNENSIAFLNETKEKENL-------- 167

Query: 115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHI 169
                         +   + D+++  I      E YD +++ ++   L       +  ++
Sbjct: 168 -------------NISTALYDINAANI-----QENYDFIVSTVVFMFLNRERVPSIIKNM 209

Query: 170 VSYAKPGAVVGI-SGILSEQLPHIINRYSEFLEDILLSEMDDWTCV 214
             +   G    I + + ++ +P  +     F E+ L     DW  +
Sbjct: 210 KEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFL 255

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 29/126 (23%)

Query: 56  IKGGELFLDYGTGSGILG--IAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL 113
            + GE  +  G G   L   + +  +G  +   V+I+P   + + +      +       
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRV-NVVEIEPDIAELSRKVIEGLGV------- 171

Query: 114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA 173
                        + V+ I  D +        +  ++DV++   L  P  ++  +I  Y 
Sbjct: 172 -------------DGVNVITGDETV------IDGLEFDVLMVAALAEPKRRVFRNIHRYV 212

Query: 174 KPGAVV 179
                +
Sbjct: 213 DTETRI 218

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 35/145 (24%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101
                  +       + G L L+ G+  G       +    +   V+   +AI  A    
Sbjct: 27  DVMHPFMVRAFTPFFRPGNL-LELGSFKGDFTSRLQEHFNDI-TCVEASEEAISHAQGRL 84

Query: 102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-- 159
                                      +    ED             +YD ++   +L  
Sbjct: 85  KDG---------------------ITYIHSRFEDA--------QLPRRYDNIVLTHVLEH 115

Query: 160 --NPLLQLADHIVSYAKPGAVVGIS 182
             +P+  L      +   G  + + 
Sbjct: 116 IDDPVALLKRINDDWLAEGGRLFLV 140

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           LD G GSGIL   A + GA     V+    A   A      NN+     ++ ++P +   
Sbjct: 55  LDVGCGSGILSFFAAQAGARKIYAVEASTMAQH-AEVLVKSNNLTD---RIVVIPGKVEE 110

Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP 161
            S+ E+VD I+ +   +     +E      + A   L P
Sbjct: 111 VSLPEQVDIIISEPMGYM--LFNERMLESYLHAKKYLKP 147

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 26/147 (17%)

Query: 38  GTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSA 97
           G G    T+  +  +  L    ++  D G G+G   +    +      G+D+ P  I+  
Sbjct: 27  GPGSPEATRKAVSFINELTDDAKI-ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIF 85

Query: 98  HQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN- 156
           ++NA   N                     +RV GI   + +       + E+ D++ +  
Sbjct: 86  NENAVKAN-------------------CADRVKGITGSMDNLPF----QNEELDLIWSEG 122

Query: 157 ILLNPLLQLA-DHIVSYAKPGAVVGIS 182
            + N   +   +    Y K G  + +S
Sbjct: 123 AIYNIGFERGMNEWSKYLKKGGFIAVS 149

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 30/123 (24%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           LD G G G   I A + GA   +G+D+  + +  A +      +                
Sbjct: 49  LDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVV---------------- 92

Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVV 179
                     +ED++        E + Y+VV++++ L+       +   +    K     
Sbjct: 93  ----CYEQKAIEDIA-------IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSF 141

Query: 180 GIS 182
             S
Sbjct: 142 IFS 144

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 52  LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
           +   +   ++ +D   G G   IA     A     +DI+P AI+   +N  LN +  K
Sbjct: 189 IMKKVSLNDVVVDMFAGVGPFSIACKN--AKKIYAIDINPHAIELLKKNIKLNKLEHK 244

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           LD G GSGIL   A + GA     V+    A   A      NN+     ++ ++P +   
Sbjct: 163 LDVGCGSGILSFFAAQAGARKIYAVEASTMAQH-AEVLVKSNNLTD---RIVVIPGKVEE 218

Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP 161
            S+ E+VD I+ +   +     +E      + A   L P
Sbjct: 219 VSLPEQVDIIISEPMGYM--LFNERMLESYLHAKKYLKP 255

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 16/139 (11%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           L    G+G           A+ V  D D  AI   ++     N G K         +   
Sbjct: 53  LAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQET- 111

Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADH------IVSYAKPG 176
                    I  D     +R +    K++++     ++       +      +      G
Sbjct: 112 ---------IRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG 162

Query: 177 AVVGISGILSEQLPHIINR 195
             V I+ +  ++L  + ++
Sbjct: 163 GKVLITTMDGDKLSKLTDK 181

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK 109
            L++   K G+  LD G G G   +   + G     GVDI   +I  A   A       K
Sbjct: 56  CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 115

Query: 110 KM 111
             
Sbjct: 116 VF 117

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK 110
           LL+  ++  +  L  G G+  L       G      VD     + +     A       +
Sbjct: 35  LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA----HVPQ 90

Query: 111 MKLHL--VPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADH 168
           ++     V    FP   +   D ++E  +      +   E+    +++  ++ + Q+   
Sbjct: 91  LRWETMDVRKLDFP---SASFDVVLEKGTLD---ALLAGERDPWTVSSEGVHTVDQVLSE 144

Query: 169 IVSYAKPGAVVGISGILSEQLPHIINRY 196
           +     PG   G    ++   PH   R+
Sbjct: 145 VSRVLVPG---GRFISMTSAAPHFRTRH 169

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 63  LDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           LD GTGSGIL I + + GA     V+    A   A      NN+      + ++      
Sbjct: 68  LDVGTGSGILAIWSAQAGARKVYAVEATKMADH-ARALVKANNLDH---IVEVIEGSVED 123

Query: 123 ASMNERVDGIVEDLSSHEI 141
            S+ E+VD I+ +   + +
Sbjct: 124 ISLPEKVDVIISEWMGYFL 142

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 57  KGGELFLD-YGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI 106
             GE  LD Y +G G  GI   K       G D +  AI+ A +N  +NN+
Sbjct: 289 VEGEKILDMY-SGVGTFGIYLAK-RGFNVKGFDSNEFAIEMARRNVEINNV 337

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 51  LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA 102
           L+ ++   G   LD G G G +G    K G  + +G D+DP  I  A Q+  
Sbjct: 39  LIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDV-LGTDLDPILIDYAKQDFP 89

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 60  ELFLDYGTGSGILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 118
           ++ LD  + +GI GI  A++  A      DI   A +   +N  LN  G  +        
Sbjct: 49  KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRES-----K 103

Query: 119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAV 178
                   + +    +D +            +  +  +   +P+  L D  +  AK   +
Sbjct: 104 GRAILKGEKTIVINHDDANRLM---AERHRYFHFIDLDPFGSPMEFL-DTALRSAKRRGI 159

Query: 179 VGISG 183
           +G++ 
Sbjct: 160 LGVTA 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.96
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.95
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.74
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.72
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.71
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.71
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.69
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.69
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.69
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.68
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.67
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.67
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.66
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.65
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.65
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.65
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.65
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.65
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.64
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.64
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.64
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.63
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.63
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.62
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.62
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.62
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.62
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.62
3ocj_A	305	Putative exported protein; structural genomics, PS	99.62
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.61
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.61
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.61
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.61
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.61
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.61
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.6
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.6
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.6
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.6
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.6
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.59
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.59
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.59
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.59
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.59
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.59
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.58
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.57
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.57
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.57
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.57
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.57
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.57
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.56
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.56
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.56
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.56
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.56
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.55
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.55
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.55
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.55
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.55
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.55
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.55
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.55
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.54
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.54
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.54
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.54
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.54
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.54
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.53
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.53
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.53
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.53
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.53
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.53
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.53
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.53
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.52
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.52
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.52
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.52
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.52
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.52
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.52
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.52
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.52
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.51
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.51
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.51
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.51
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.51
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.51
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.51
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.51
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.51
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.5
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.5
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.5
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.5
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.49
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.49
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.49
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.49
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.49
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.49
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.49
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.49
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.49
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.48
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.48
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.48
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.48
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.48
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.48
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.48
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.47
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.47
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.47
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.47
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.47
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.47
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.47
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.47
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.46
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.46
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.46
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.46
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.46
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.46
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.45
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.45
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.45
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.45
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.45
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.45
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.45
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.45
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.45
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.45
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.45
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.44
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.44
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.44
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.44
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.43
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.43
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.43
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.43
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.43
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.43
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.43
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.42
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.42
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.42
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.42
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.42
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.42
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.42
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.41
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.41
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.41
2o07_A	304	Spermidine synthase; structural genomics, structur	99.41
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.4
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.4
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.4
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.4
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.4
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.4
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.4
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.4
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.39
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.39
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.39
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.39
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.38
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.38
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.38
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.38
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.38
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.38
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.37
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.37
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.37
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.36
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.36
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.35
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.35
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.34
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.34
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.34
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.34
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.34
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.34
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.33
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.33
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.33
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.33
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.33
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.33
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.33
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.32
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.32
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.32
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.31
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.31
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.31
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.31
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.31
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.31
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.31
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.31
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.31
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.3
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.29
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.28
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.26
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.26
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.25
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.25
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.24
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.24
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.23
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.23
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.23
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.21
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.2
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.2
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.18
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.17
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.16
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.15
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.13
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.12
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.09
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.07
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.07
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.04
3lkd_A	542	Type I restriction-modification system methyltrans	99.03
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.01
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.0
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.0
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.99
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.99
3khk_A	544	Type I restriction-modification system methylation	98.94
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.93
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.92
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.92
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.92
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.91
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.9
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.88
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.87
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.86
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.85
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.85
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.85
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.84
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.8
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.79
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.74
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.72
3ufb_A	530	Type I restriction-modification system methyltran	98.7
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.69
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.67
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.66
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.64
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.56
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.56
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.44
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.34
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.21
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.14
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.09
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.06
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.03
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.01
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.97
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.97
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.93
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.86
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.86
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.84
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.71
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.6
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.37
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.17
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.14
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.11
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.98
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.89
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.71
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.64
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.6
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.43
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.27
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.25
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.1
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.02
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.77
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.73
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.73
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.72
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.68
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.66
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.34
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.23
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.18
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.17
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.15
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.14
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.11
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.08
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.02
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.91
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.89
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.88
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.77
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.74
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.72
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.49
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.47
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.46
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.45
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.42
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.39
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.38
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.18
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.17
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.84
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.84
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.75
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.62
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.45
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.44
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.3
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.29
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.17
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.08
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	93.03
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.03
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	92.97
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	92.94
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	92.79
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.74
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.74
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	92.71
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.59
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.49
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.21
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.21
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.13
3me5_A	482	Cytosine-specific methyltransferase; structural ge	92.04
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.02
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	91.93
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.86
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.78
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.69
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.67
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	91.59
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	91.54
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	91.48
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	91.24
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	90.55
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	89.77
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.69
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	89.26
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.94
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	88.61
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	88.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.9
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	87.88
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	87.56
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	87.29
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	87.16
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	87.13
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	86.73
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	86.63
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	86.17
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	85.94
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	85.89
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.87
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	85.76
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	85.24
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	84.5
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	83.97
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	83.9
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	83.78
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	83.72
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	83.67
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	83.56
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	82.87
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	82.77
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	82.62
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	82.31
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	82.19
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	81.31
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	81.09
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	80.93
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	80.23

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.96  E-value=3.2e-27  Score=190.28  Aligned_cols=197  Identities=35%  Similarity=0.464  Sum_probs=166.0

Q ss_pred             CCCCceeecCceEEeeCCCCCCC--CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHh
Q 041459            1 ESFHPVEVTKGLWIVPEWSTPPD--VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK   78 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~   78 (225)
                      ++|+||.+++..++.|.|.++..  .+...+.++|++.|+++.+++...+...+.....++.+|||+|||+|.++..+++
T Consensus         1 ~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~   80 (205)
T 3grz_A            1 KYYHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHK   80 (205)
T ss_dssp             CCCCCEEEETTEEEEETTCCCCCSSTTCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCcEEECCcEEEeccccccccCCCCceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH
Confidence            58999999999999999998644  6778889999999999999999999999988777899999999999999999988


Q ss_pred             cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccc
Q 041459           79 FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL  158 (225)
Q Consensus        79 ~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~  158 (225)
                      .+..+++|+|+++.+++.|++++..+++.+  +.+...+....                        ..++||+|+++++
T Consensus        81 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~------------------------~~~~fD~i~~~~~  134 (205)
T 3grz_A           81 LGAKSVLATDISDESMTAAEENAALNGIYD--IALQKTSLLAD------------------------VDGKFDLIVANIL  134 (205)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHHHHHTTCCC--CEEEESSTTTT------------------------CCSCEEEEEEESC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCc--eEEEecccccc------------------------CCCCceEEEECCc
Confidence            888899999999999999999998888763  66666554332                        4578999999999


Q ss_pred             hhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeeeecccc
Q 041459          159 LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTKKRAKE  223 (225)
Q Consensus       159 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~~~~~  223 (225)
                      ++.+..+++.+.++|||||.++++++.......+.+.+.+. |..+.....+.|.++...++..+.
T Consensus       135 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~~~~~  200 (205)
T 3grz_A          135 AEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRKHEGH  200 (205)
T ss_dssp             HHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECC---
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEEecccccc
Confidence            99999999999999999999999888888888888888876 877888888999999998887553

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.95  E-value=1.3e-27  Score=199.80  Aligned_cols=188  Identities=28%  Similarity=0.477  Sum_probs=158.6

Q ss_pred             CCCceeecCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCC
Q 041459            2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGA   81 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~   81 (225)
                      +|+|+.++. .++.|+|... ......+.++|++.|+++.++++..+++++....+++.+|||+|||+|.+++.+++.+.
T Consensus        66 ~~~p~~~~~-~~i~~~w~~~-~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~  143 (254)
T 2nxc_A           66 DLKPALAPP-FVVLAPWHTW-EGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG  143 (254)
T ss_dssp             HCCCEEETT-EEEECTTCCC-CSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             hCCCEEEec-EEEeCCCCCC-CCCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC
Confidence            689999999 9999999984 67778899999999999999999999999987777889999999999999999988877


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH
Q 041459           82 AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus        82 ~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                       +++|+|+++.+++.|++|+..+++.   +.+...+...          .+             +.++||+|++|.+.+.
T Consensus       144 -~v~gvDi~~~~v~~a~~n~~~~~~~---v~~~~~d~~~----------~~-------------~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          144 -KALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSLEA----------AL-------------PFGPFDLLVANLYAEL  196 (254)
T ss_dssp             -EEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCHHH----------HG-------------GGCCEEEEEEECCHHH
T ss_pred             -eEEEEECCHHHHHHHHHHHHHcCCc---EEEEECChhh----------cC-------------cCCCCCEEEECCcHHH
Confidence             8999999999999999999888764   4444432211          00             3567999999999988


Q ss_pred             HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeee
Q 041459          162 LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTK  218 (225)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k  218 (225)
                      +..++..+.+.|||||.++++++......++.+.+++. |..+.....++|.++.++|
T Consensus       197 ~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~k  254 (254)
T 2nxc_A          197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCeEEEEEEC
Confidence            89999999999999999999988888889999988876 8888888899999999875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.74  E-value=4.7e-17  Score=136.42  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=90.3

Q ss_pred             HHHHHHhhccCCCcEEEEcccccHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcc
Q 041459           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPAS  124 (225)
Q Consensus        48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (225)
                      +..++...+++|.+|||+|||+|.++..+++.   +..+|+|+|+|+.|++.|++++...+.. .++.+...+...+   
T Consensus        60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~-~~v~~~~~D~~~~---  135 (261)
T 4gek_A           60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRDI---  135 (261)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCTTTC---
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC-ceEEEeecccccc---
Confidence            33344455778999999999999999998874   3458999999999999999998876654 4566776666554   


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                           +.+.||+|+++..+++     ...+++++++.|||||.+++++...
T Consensus       136 ---------------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          136 ---------------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             ---------------------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ---------------------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence                                 4567999999888764     3467999999999999999976654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.72  E-value=2.6e-16  Score=138.63  Aligned_cols=167  Identities=17%  Similarity=0.207  Sum_probs=122.5

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc----cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI----KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~----~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      +..+...|+..+..+.++....+++.+....    .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++
T Consensus       197 ~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~  275 (381)
T 3dmg_A          197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGL  275 (381)
T ss_dssp             EEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHH
T ss_pred             eEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHH
Confidence            3466677887777777888888888876544    267899999999999999998885 48999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhc
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYA  173 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~L  173 (225)
                      ..+++.   +.+...+......                      ..++||+|++|++++.        ...++..+.+.|
T Consensus       276 ~~~~~~---v~~~~~D~~~~~~----------------------~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~L  330 (381)
T 3dmg_A          276 EANALK---AQALHSDVDEALT----------------------EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARL  330 (381)
T ss_dssp             HHTTCC---CEEEECSTTTTSC----------------------TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHE
T ss_pred             HHcCCC---eEEEEcchhhccc----------------------cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhc
Confidence            988764   5566655544311                      3478999999988764        457899999999


Q ss_pred             cCCeEEEEeccCCCcHHHHHHHHHhhhhhhcccccCCceEEEeeeecc
Q 041459          174 KPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMDDWTCVSGTKKRA  221 (225)
Q Consensus       174 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~~~  221 (225)
                      ||||.+++++........   .+.+.|...+......|.-+...+...
T Consensus       331 kpGG~l~iv~n~~l~~~~---~l~~~f~~v~~l~~~gF~Vl~a~~~~~  375 (381)
T 3dmg_A          331 RPGGVFFLVSNPFLKYEP---LLEEKFGAFQTLKVAEYKVLFAEKRGR  375 (381)
T ss_dssp             EEEEEEEEEECTTSCHHH---HHHHHHSCCEEEEESSSEEEEEECC--
T ss_pred             CcCcEEEEEEcCCCChHH---HHHHhhccEEEEeCCCEEEEEEEEecc
Confidence            999999997665543333   333334444433556677666665543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.71  E-value=1.5e-16  Score=129.71  Aligned_cols=150  Identities=21%  Similarity=0.314  Sum_probs=103.8

Q ss_pred             HHhhccCCCcEEEEccc-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           52 LQSLIKGGELFLDYGTG-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        52 L~~~~~~~~~vlDiGcG-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      +....+++.+|||+||| +|.++..+++....+++|+|+++.+++.|++++..+++   .+.+...+...+.        
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~--------  117 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS---NVRLVKSNGGIIK--------  117 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEEECSSCSST--------
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEeCCchhhh--------
Confidence            34456688999999999 99999998876467799999999999999999998886   3566665543221        


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchhH----------------------HHHHHHHHHHhccCCeEEEEeccCC-C
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLNP----------------------LLQLADHIVSYAKPGAVVGISGILS-E  187 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~-~  187 (225)
                                  .+ +.++||+|++|+|+.+                      +..+++.+.++|||||.+++..... .
T Consensus       118 ------------~~-~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  184 (230)
T 3evz_A          118 ------------GV-VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK  184 (230)
T ss_dssp             ------------TT-CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH
T ss_pred             ------------hc-ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh
Confidence                        00 3578999999988743                      3678999999999999999854332 4


Q ss_pred             cHHHHHHHHHhh-hh--hhcccccCCc-eEEEeeeecccccC
Q 041459          188 QLPHIINRYSEF-LE--DILLSEMDDW-TCVSGTKKRAKEDH  225 (225)
Q Consensus       188 ~~~~~~~~~~~~-~~--~~~~~~~~~w-~~~~~~k~~~~~~~  225 (225)
                      ....+.+.+.+. +.  .+.......| ..+.++|.....+|
T Consensus       185 ~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~~~~~~  226 (230)
T 3evz_A          185 LLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGISEGHH  226 (230)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC-----
T ss_pred             HHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEecccccccc
Confidence            556666666654 42  2222223333 46677776666554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.71  E-value=7.1e-16  Score=121.40  Aligned_cols=138  Identities=18%  Similarity=0.233  Sum_probs=106.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++...+++.+.++.+...+.....              
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------------  115 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--------------  115 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--------------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc--------------
Confidence            36789999999999999998887 678999999999999999999887765323666655543220              


Q ss_pred             ccccccCCCCCCceeEEEeccchhH----HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhhhhcc-cccCCc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILL-SEMDDW  211 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w  211 (225)
                               ..++||+|++++++++    ...+++.+.+.|+|||.+++.+.......++.+.+++.+..++. ...+.|
T Consensus       116 ---------~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  186 (194)
T 1dus_A          116 ---------KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGY  186 (194)
T ss_dssp             ---------TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTE
T ss_pred             ---------ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCcE
Confidence                     3568999999998653    56789999999999999999888776777777887777654443 334567


Q ss_pred             eEEEeee
Q 041459          212 TCVSGTK  218 (225)
Q Consensus       212 ~~~~~~k  218 (225)
                      ..+..+|
T Consensus       187 ~~~~~~k  193 (194)
T 1dus_A          187 RVLKSKK  193 (194)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEee
Confidence            6666554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=2.4e-16  Score=125.04  Aligned_cols=133  Identities=22%  Similarity=0.229  Sum_probs=94.7

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc-----cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI-----KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~-----~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      +..+.+++ ..    .+++...+.+.+...+     .++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|+++
T Consensus        12 g~~l~~~~-~~----~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~   86 (189)
T 3p9n_A           12 GRRIAVPP-RG----TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARN   86 (189)
T ss_dssp             TCEEECCS-CC----C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred             CcEecCCC-CC----CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHH
Confidence            34555554 32    3444444444332221     46889999999999999988888888899999999999999999


Q ss_pred             HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----HHHHHHHHHH--hcc
Q 041459          101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----LLQLADHIVS--YAK  174 (225)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~--~Lk  174 (225)
                      +..+++.  .+.+...+...+       ....             ..++||+|+++++++.    +...+..+.+  +||
T Consensus        87 ~~~~~~~--~v~~~~~d~~~~-------~~~~-------------~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~  144 (189)
T 3p9n_A           87 IEALGLS--GATLRRGAVAAV-------VAAG-------------TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTR  144 (189)
T ss_dssp             HHHHTCS--CEEEEESCHHHH-------HHHC-------------CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHcCCC--ceEEEEccHHHH-------Hhhc-------------cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccC
Confidence            9988873  355655443221       0000             3578999999998865    5678889988  999


Q ss_pred             CCeEEEEeccC
Q 041459          175 PGAVVGISGIL  185 (225)
Q Consensus       175 pgG~l~~~~~~  185 (225)
                      |||.+++....
T Consensus       145 pgG~l~~~~~~  155 (189)
T 3p9n_A          145 EGTVAVVERAT  155 (189)
T ss_dssp             TTCEEEEEEET
T ss_pred             CCeEEEEEecC
Confidence            99999996543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.69  E-value=8.2e-16  Score=135.96  Aligned_cols=153  Identities=17%  Similarity=0.149  Sum_probs=117.7

Q ss_pred             CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+.++.+.+++...+.+|.+..++....++....++|++|||+|||+|.+++.+++.+.. |+++|+|+.+++.|++|+
T Consensus       178 v~E~g~~f~vd~~~~~~tG~f~dqr~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~  256 (393)
T 4dmg_A          178 VEEDGLRFPIPLALAQKTGYYLDQRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAA  256 (393)
T ss_dssp             EEETTEEEEEETTTCCTTSSCGGGHHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH
T ss_pred             EEECCEEEEEechhccccCcCCCHHHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHH
Confidence            4467788889998888999999999988888877777999999999999999999988766 999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHH
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHI  169 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~  169 (225)
                      ..+++..   .+...+..           .++        ..  ..+.||+|++++|.            ..+..++..+
T Consensus       257 ~~ng~~~---~~~~~D~~-----------~~l--------~~--~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a  312 (393)
T 4dmg_A          257 LRLGLRV---DIRHGEAL-----------PTL--------RG--LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREA  312 (393)
T ss_dssp             HHHTCCC---EEEESCHH-----------HHH--------HT--CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHH
T ss_pred             HHhCCCC---cEEEccHH-----------HHH--------HH--hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9998762   23332221           110        01  12349999999985            3456789999


Q ss_pred             HHhccCCeEEEE-eccCCCcHHHHHHHHHhh
Q 041459          170 VSYAKPGAVVGI-SGILSEQLPHIINRYSEF  199 (225)
Q Consensus       170 ~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~~  199 (225)
                      .++|||||.+++ +|........+.+.+...
T Consensus       313 ~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a  343 (393)
T 4dmg_A          313 LRLLAEEGFLWLSSCSYHLRLEDLLEVARRA  343 (393)
T ss_dssp             HHTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            999999999984 555555555555555443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.69  E-value=9.9e-16  Score=120.73  Aligned_cols=119  Identities=16%  Similarity=0.155  Sum_probs=89.4

Q ss_pred             chHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        43 ~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      ........++...++++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++.  ++.+...+...+ 
T Consensus         7 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~~~~~l-   82 (185)
T 3mti_A            7 RPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIE--NTELILDGHENL-   82 (185)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCC--CEEEEESCGGGG-
T ss_pred             hHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCcHHHH-
Confidence            3455566667666778999999999999999999988 678999999999999999999888874  355554322211 


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                             ..+             .+++||+|++++++            ......++.+.+.|||||.+++.++.
T Consensus        83 -------~~~-------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           83 -------DHY-------------VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             -------GGT-------------CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             -------Hhh-------------ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence                   001             35689999998533            22346789999999999999987664

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.68  E-value=5.8e-16  Score=130.72  Aligned_cols=148  Identities=19%  Similarity=0.245  Sum_probs=107.1

Q ss_pred             CCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+.+..+.+++..   ++-++........+....+++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++|+.
T Consensus        93 ~e~g~~f~~d~~~---~~f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~  169 (278)
T 2frn_A           93 VENGIKYKLDVAK---IMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH  169 (278)
T ss_dssp             EETTEEEEEETTT---SCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHH
T ss_pred             EECCEEEEEEccc---eeEcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH
Confidence            3556666666542   1123333344455555667799999999999999999998876689999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      .+++. +.+.+...+...+.                       ...+||+|+++++... ..++..+.+.|||||.+++.
T Consensus       170 ~n~~~-~~v~~~~~D~~~~~-----------------------~~~~fD~Vi~~~p~~~-~~~l~~~~~~LkpgG~l~~~  224 (278)
T 2frn_A          170 LNKVE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVRT-HEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             HTTCT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEEEE
T ss_pred             HcCCC-ceEEEEECCHHHhc-----------------------ccCCccEEEECCchhH-HHHHHHHHHHCCCCeEEEEE
Confidence            99886 34666666554431                       3568999999988543 56788899999999999986


Q ss_pred             ccC------CCcHHHHHHHHHh
Q 041459          183 GIL------SEQLPHIINRYSE  198 (225)
Q Consensus       183 ~~~------~~~~~~~~~~~~~  198 (225)
                      +..      ......+.+.+.+
T Consensus       225 ~~~~~~~~~~~~~~~i~~~~~~  246 (278)
T 2frn_A          225 NTVPEKLMPREPFETFKRITKE  246 (278)
T ss_dssp             EEEEGGGTTTTTHHHHHHHHHH
T ss_pred             EeeccccccccHHHHHHHHHHH
Confidence            554      2344455544443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.67  E-value=9.5e-16  Score=132.73  Aligned_cols=157  Identities=14%  Similarity=0.100  Sum_probs=113.6

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhhcc---CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~---~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      +.+..+.+++...+.+|.++.++....++...+.   ++.+|||+|||+|.+++.+++.+. +++++|+|+.+++.|++|
T Consensus       116 e~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n  194 (332)
T 2igt_A          116 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKEN  194 (332)
T ss_dssp             ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             ECCEEEEEecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHH
Confidence            4567777888877788888888877666655543   578999999999999999998877 899999999999999999


Q ss_pred             HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-------------hHHHHHHH
Q 041459          101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-------------NPLLQLAD  167 (225)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------------~~~~~~l~  167 (225)
                      +..+++.+..+.+...+...+       .....           ....+||+|++|+|.             ..+..++.
T Consensus       195 ~~~~gl~~~~v~~i~~D~~~~-------l~~~~-----------~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~  256 (332)
T 2igt_A          195 QVLAGLEQAPIRWICEDAMKF-------IQREE-----------RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  256 (332)
T ss_dssp             HHHHTCTTSCEEEECSCHHHH-------HHHHH-----------HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             HHHcCCCccceEEEECcHHHH-------HHHHH-----------hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHH
Confidence            998887643355554433211       00000           014689999999884             13567899


Q ss_pred             HHHHhccCCeEEEEeccC--CCcHHHHHHHHHhh
Q 041459          168 HIVSYAKPGAVVGISGIL--SEQLPHIINRYSEF  199 (225)
Q Consensus       168 ~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~  199 (225)
                      .+.++|||||.+++.+..  ......+.+.+++.
T Consensus       257 ~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a  290 (332)
T 2igt_A          257 ICREILSPKALGLVLTAYSIRASFYSMHELMRET  290 (332)
T ss_dssp             HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            999999999997775433  22445555555533

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.67  E-value=2.8e-15  Score=120.15  Aligned_cols=120  Identities=14%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+++.  ++.+...+.....            
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~------------  103 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR--NVTLVEAFAPEGL------------  103 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT--TEEEEECCTTTTC------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeCChhhhh------------
Confidence            457889999999999999998876 4678999999999999999999888763  3666665543220            


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                .....||+|+++.+.+.+..+++.+.+.|||||.+++.+........+.+.+++.
T Consensus       104 ----------~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          104 ----------DDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH  158 (204)
T ss_dssp             ----------TTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred             ----------hcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence                      0236799999998888888999999999999999999877666666776666654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.66  E-value=3.7e-15  Score=120.14  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|++++..+++. +.+.+...+....              
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~--------------  116 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS-PRMRAVQGTAPAA--------------  116 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCTTGG--------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEeCchhhh--------------
Confidence            456889999999999999999888 678999999999999999999888875 2466666554331              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                              +.....||+|+++.... .. +++.+.++|||||.++++....+....+.+.+++.
T Consensus       117 --------~~~~~~~D~v~~~~~~~-~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  170 (204)
T 3njr_A          117 --------LADLPLPEAVFIGGGGS-QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH  170 (204)
T ss_dssp             --------GTTSCCCSEEEECSCCC-HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             --------cccCCCCCEEEECCccc-HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence                    00235799999987664 34 89999999999999999887777777777776654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.65  E-value=2e-15  Score=125.78  Aligned_cols=120  Identities=22%  Similarity=0.251  Sum_probs=93.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++++..+++. +++.+...+...+.       ..+     
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~~v~~~~~D~~~~~-------~~~-----  115 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE-DQIEIIEYDLKKIT-------DLI-----  115 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT-TTEEEECSCGGGGG-------GTS-----
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc-ccEEEEECcHHHhh-------hhh-----
Confidence            68899999999999999999876668999999999999999999988876 34666655443221       001     


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIIN  194 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (225)
                              +.++||+|++|+|+..                       +..++..+.++|||||.+++. .......++..
T Consensus       116 --------~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~  186 (259)
T 3lpm_A          116 --------PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV-HRPERLLDIID  186 (259)
T ss_dssp             --------CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE-ECTTTHHHHHH
T ss_pred             --------ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE-EcHHHHHHHHH
Confidence                    3678999999998733                       346889999999999999984 45567777777


Q ss_pred             HHHhh
Q 041459          195 RYSEF  199 (225)
Q Consensus       195 ~~~~~  199 (225)
                      .+.+.
T Consensus       187 ~l~~~  191 (259)
T 3lpm_A          187 IMRKY  191 (259)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            77654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.65  E-value=2e-15  Score=121.17  Aligned_cols=103  Identities=20%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      +.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++. .++.+...+...++.               
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~---------------  107 (219)
T 3dlc_A           44 AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN-DRIQIVQGDVHNIPI---------------  107 (219)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECBTTBCSS---------------
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc-CceEEEEcCHHHCCC---------------
Confidence            3499999999999999988876668999999999999999999887765 356666666544321               


Q ss_pred             ccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          139 HEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                             +.++||+|+++..+++   ...+++++.+.|||||.+++++.
T Consensus       108 -------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          108 -------EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             -------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -------CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence                   4678999999988765   47789999999999999999753

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.65  E-value=2e-15  Score=127.95  Aligned_cols=144  Identities=22%  Similarity=0.322  Sum_probs=101.8

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +..+.++++..+   .++.+..+.+.+....  .++.+|||+|||+|.+++.+++.+..+++|+|+|+.+++.|++|+..
T Consensus        92 ~~~~~v~~~~li---pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~  168 (284)
T 1nv8_A           92 GLSFLVEEGVFV---PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER  168 (284)
T ss_dssp             TEEEECCTTSCC---CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCcee---cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            455666666433   3444544444443322  36789999999999999998876667899999999999999999998


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCce---eEEEeccchhHH------------------
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKY---DVVIANILLNPL------------------  162 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---DvIi~~~~~~~~------------------  162 (225)
                      +++. +++.+...+....                        ..++|   |+|++|+|+...                  
T Consensus       169 ~~l~-~~v~~~~~D~~~~------------------------~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~  223 (284)
T 1nv8_A          169 HGVS-DRFFVRKGEFLEP------------------------FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFG  223 (284)
T ss_dssp             TTCT-TSEEEEESSTTGG------------------------GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBC
T ss_pred             cCCC-CceEEEECcchhh------------------------cccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcC
Confidence            8875 2455655543221                        12467   999999887421                  


Q ss_pred             ----HHHHHHHH-HhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          163 ----LQLADHIV-SYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       163 ----~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                          ..++..+. +.|+|||.+++. +...+...+.+.+++
T Consensus       224 ~~dgl~~~~~i~~~~l~pgG~l~~e-~~~~q~~~v~~~~~~  263 (284)
T 1nv8_A          224 GEDGLDFYREFFGRYDTSGKIVLME-IGEDQVEELKKIVSD  263 (284)
T ss_dssp             TTTSCHHHHHHHHHCCCTTCEEEEE-CCTTCHHHHTTTSTT
T ss_pred             CCcHHHHHHHHHHhcCCCCCEEEEE-ECchHHHHHHHHHHh
Confidence                15788899 999999999984 555666666655544

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.65  E-value=5e-15  Score=117.78  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCC
Q 041459           44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  121 (225)
Q Consensus        44 ~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  121 (225)
                      .......++...++++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|++++..+++. .++.+...+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~   86 (197)
T 3eey_A            8 SLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-DRVTLIKDGHQNM   86 (197)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-GGEEEECSCGGGG
T ss_pred             HHHHHHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHH
Confidence            334444445555678899999999999999998875  4568999999999999999999887763 3455555443222


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchh------------HHHHHHHHHHHhccCCeEEEEeccC
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN------------PLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                      .        ..             ..++||+|++++++-            ....+++.+.++|||||.+++.++.
T Consensus        87 ~--------~~-------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           87 D--------KY-------------IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             G--------GT-------------CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             h--------hh-------------ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            1        00             347899999998661            2456899999999999999987653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.65  E-value=3.6e-15  Score=131.55  Aligned_cols=157  Identities=11%  Similarity=0.051  Sum_probs=113.0

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +.+..+.+++.....++-+..++....++.....++.+|||+|||+|.+++.+++.++.+++++|+++.+++.|++|+..
T Consensus       178 e~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~  257 (385)
T 2b78_A          178 ENGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA  257 (385)
T ss_dssp             ETTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH
T ss_pred             ECCEEEEEeccccccCCcCCcHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            36788888888655666665666666666555356889999999999999999988888999999999999999999999


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh------------HHHHHHHHHHH
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN------------PLLQLADHIVS  171 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~------------~~~~~l~~~~~  171 (225)
                      +++....+.+...+...+       +..+.           ....+||+|++++|..            .+..++..+.+
T Consensus       258 n~~~~~~v~~~~~D~~~~-------l~~~~-----------~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~  319 (385)
T 2b78_A          258 NHLDMANHQLVVMDVFDY-------FKYAR-----------RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLE  319 (385)
T ss_dssp             TTCCCTTEEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHH
T ss_pred             cCCCccceEEEECCHHHH-------HHHHH-----------HhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence            987622466655443211       11110           0245899999998872            24557788899


Q ss_pred             hccCCeEEEEeccCCCc-HHHHHHHHHh
Q 041459          172 YAKPGAVVGISGILSEQ-LPHIINRYSE  198 (225)
Q Consensus       172 ~LkpgG~l~~~~~~~~~-~~~~~~~~~~  198 (225)
                      .|+|||++++++..... ...+.+.+.+
T Consensus       320 ~L~pgG~l~~~~~~~~~~~~~~~~~i~~  347 (385)
T 2b78_A          320 ILSENGLIIASTNAANMTVSQFKKQIEK  347 (385)
T ss_dssp             TEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             hcCCCcEEEEEeCCCcCCHHHHHHHHHH
Confidence            99999999998765433 3444444443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.64  E-value=1.1e-15  Score=129.24  Aligned_cols=136  Identities=20%  Similarity=0.289  Sum_probs=105.8

Q ss_pred             CCCCcceeEEecccc-eecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459           21 PPDVQATNIILNPGL-AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        21 ~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      .+.+.++.+.+|+.. .|.++.    ..-...+...+++|.+|||+|||+|.+++.+++.+..+|+++|++|.+++.+++
T Consensus        91 ~~~E~G~~~~~D~~k~~f~~~~----~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~  166 (278)
T 3k6r_A           91 VHVENGIKYKLDVAKIMFSPAN----VKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE  166 (278)
T ss_dssp             EEEETTEEEEEETTTSCCCGGG----HHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHH
T ss_pred             EEEECCEEEEEeccceEEcCCc----HHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence            346788889999873 443332    222334556677899999999999999999999888899999999999999999


Q ss_pred             HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEE
Q 041459          100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVV  179 (225)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l  179 (225)
                      |+..|++. +.+.+...|...+.                       ..+.||.|++|+|... ..++..+.++||+||++
T Consensus       167 N~~~N~v~-~~v~~~~~D~~~~~-----------------------~~~~~D~Vi~~~p~~~-~~~l~~a~~~lk~gG~i  221 (278)
T 3k6r_A          167 NIHLNKVE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVRT-HEFIPKALSIAKDGAII  221 (278)
T ss_dssp             HHHHTTCT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEE
T ss_pred             HHHHcCCC-CcEEEEeCcHHHhc-----------------------cccCCCEEEECCCCcH-HHHHHHHHHHcCCCCEE
Confidence            99999987 46777776665442                       4578999999987643 35667788999999998


Q ss_pred             EEeccC
Q 041459          180 GISGIL  185 (225)
Q Consensus       180 ~~~~~~  185 (225)
                      .+.++.
T Consensus       222 h~~~~~  227 (278)
T 3k6r_A          222 HYHNTV  227 (278)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            776553

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.64  E-value=8e-16  Score=123.70  Aligned_cols=110  Identities=17%  Similarity=0.172  Sum_probs=82.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.+++.++..+..+++|+|+|+.+++.|++++..+++....+.+...+...+.       ...     
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~-------~~~-----  120 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-------KQP-----  120 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-------TSC-----
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH-------Hhh-----
Confidence            67899999999999999877777778999999999999999999888863123555544322110       000     


Q ss_pred             cccccCCCCCCc-eeEEEeccchh--HHHHHHHHH--HHhccCCeEEEEeccCCC
Q 041459          138 SHEIRGISETEK-YDVVIANILLN--PLLQLADHI--VSYAKPGAVVGISGILSE  187 (225)
Q Consensus       138 ~~~~~~~~~~~~-~DvIi~~~~~~--~~~~~l~~~--~~~LkpgG~l~~~~~~~~  187 (225)
                              ..++ ||+|++++++.  ....++..+  .++|||||.+++++....
T Consensus       121 --------~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          121 --------QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             --------CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             --------ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence                    2467 99999999853  456677777  567999999999765443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.64  E-value=1.7e-14  Score=121.23  Aligned_cols=149  Identities=14%  Similarity=0.166  Sum_probs=104.4

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      ..+.++++...   .++.+..+.+.+.... .++.+|||+|||+|.+++.+++ .+..+++|+|+|+.+++.|++|+..+
T Consensus        80 ~~~~~~~~~~i---pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~  156 (276)
T 2b3t_A           80 LPLFVSPATLI---PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL  156 (276)
T ss_dssp             EEEECCTTSCC---CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEeCCCCcc---cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            34455555332   3444444444443333 4678999999999999999885 56778999999999999999999888


Q ss_pred             CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-------------------------
Q 041459          105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-------------------------  159 (225)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------------------------  159 (225)
                      ++.  ++.+...+....          .             +.++||+|++|+|+                         
T Consensus       157 ~~~--~v~~~~~d~~~~----------~-------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~  211 (276)
T 2b3t_A          157 AIK--NIHILQSDWFSA----------L-------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAAD  211 (276)
T ss_dssp             TCC--SEEEECCSTTGG----------G-------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHH
T ss_pred             CCC--ceEEEEcchhhh----------c-------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCC
Confidence            765  245544433211          0             35689999999876                         


Q ss_pred             ---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459          160 ---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  204 (225)
Q Consensus       160 ---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (225)
                         ..+..++..+.++|||||.+++. ....+..++.+.+++. |..+.
T Consensus       212 ~g~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~l~~~Gf~~v~  259 (276)
T 2b3t_A          212 SGMADIVHIIEQSRNALVSGGFLLLE-HGWQQGEAVRQAFILAGYHDVE  259 (276)
T ss_dssp             HHTHHHHHHHHHHGGGEEEEEEEEEE-CCSSCHHHHHHHHHHTTCTTCC
T ss_pred             cHHHHHHHHHHHHHHhcCCCCEEEEE-ECchHHHHHHHHHHHCCCcEEE
Confidence               23467889999999999999985 4455666777777654 54443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.63  E-value=2.1e-15  Score=133.37  Aligned_cols=143  Identities=15%  Similarity=0.143  Sum_probs=111.8

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +.+..+.+++...+.+|.+..++....++... .++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++|+..
T Consensus       187 ~~g~~f~v~~~~~~~tgff~~~~~~~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~  265 (396)
T 3c0k_A          187 EHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL  265 (396)
T ss_dssp             ETTEEEEECTTTSSTTSSCGGGHHHHHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEeccccccCCcCcCHHHHHHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45677888888777788888877777777665 47889999999999999999998878999999999999999999999


Q ss_pred             cCC-CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHH
Q 041459          104 NNI-GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIV  170 (225)
Q Consensus       104 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~  170 (225)
                      +++ . +++.+...+...+       ...+.           ....+||+|++++|.            ..+..++..+.
T Consensus       266 ngl~~-~~v~~~~~D~~~~-------~~~~~-----------~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~  326 (396)
T 3c0k_A          266 NKLDL-SKAEFVRDDVFKL-------LRTYR-----------DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAI  326 (396)
T ss_dssp             TTCCG-GGEEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHH
T ss_pred             cCCCc-cceEEEECCHHHH-------HHHHH-----------hcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence            887 4 2455555443211       11100           014689999999987            56778899999


Q ss_pred             HhccCCeEEEEeccCC
Q 041459          171 SYAKPGAVVGISGILS  186 (225)
Q Consensus       171 ~~LkpgG~l~~~~~~~  186 (225)
                      +.|+|||++++++...
T Consensus       327 ~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          327 QLLNEGGILLTFSCSG  342 (396)
T ss_dssp             HTEEEEEEEEEEECCT
T ss_pred             HhcCCCcEEEEEeCCC
Confidence            9999999999976654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.63  E-value=1e-14  Score=128.26  Aligned_cols=164  Identities=15%  Similarity=0.170  Sum_probs=108.6

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      +..+...|+.....+.....+.++..+..  .++.+|||+|||+|.+++.+++. +..+++++|+++.+++.|++|+..+
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~--~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n  269 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN  269 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHHHHHTCCC--SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHHHHHhCcc--cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc
Confidence            35555666654444555555555444422  24589999999999999998875 4678999999999999999999988


Q ss_pred             CCCC-CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccC
Q 041459          105 NIGP-KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKP  175 (225)
Q Consensus       105 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~Lkp  175 (225)
                      ++.. ..+.+...+....                       .+.++||+|++|+|++.        ...++..+.+.|||
T Consensus       270 gl~~~~~v~~~~~D~~~~-----------------------~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp  326 (375)
T 4dcm_A          270 MPEALDRCEFMINNALSG-----------------------VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI  326 (375)
T ss_dssp             CGGGGGGEEEEECSTTTT-----------------------CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE
T ss_pred             CCCcCceEEEEechhhcc-----------------------CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC
Confidence            8652 1244454443221                       04568999999999864        23578999999999


Q ss_pred             CeEEEEeccCCCcHHHHHHHHHhhhhhhcc-cccCCceEEEee
Q 041459          176 GAVVGISGILSEQLPHIINRYSEFLEDILL-SEMDDWTCVSGT  217 (225)
Q Consensus       176 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~  217 (225)
                      ||.+++++........   .+.+.|...+. .....|+-+...
T Consensus       327 gG~l~iv~n~~~~~~~---~l~~~fg~~~~~a~~~~F~V~~~~  366 (375)
T 4dcm_A          327 NGELYIVANRHLDYFH---KLKKIFGNCTTIATNNKFVVLKAV  366 (375)
T ss_dssp             EEEEEEEEETTSCHHH---HHHHHHSCCEEEEECSSEEEEEEE
T ss_pred             CcEEEEEEECCcCHHH---HHHHhcCCEEEEeeCCCEEEEEEc
Confidence            9999997665443332   33333433332 333445444433

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=3.1e-15  Score=124.73  Aligned_cols=106  Identities=16%  Similarity=0.197  Sum_probs=88.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++. .++.+...+...++.            
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------  110 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGSMDDLPF------------  110 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCC------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC-cCcEEEEcChhhCCC------------
Confidence            3568999999999999999999887778999999999999999999888875 356777766654421            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                +.++||+|+++.++++  ...+++.+.++|||||.+++++.
T Consensus       111 ----------~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          111 ----------RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             ----------CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ----------CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence                      4678999999888765  46789999999999999998754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.62  E-value=5.3e-15  Score=130.68  Aligned_cols=141  Identities=23%  Similarity=0.286  Sum_probs=107.0

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      .+..+.+++ ..+.+|.+..++....++....+++.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|++|+..+
T Consensus       185 ~g~~~~~~~-~~~~tg~f~~~~~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n  263 (396)
T 2as0_A          185 GRAKFIVDM-RGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN  263 (396)
T ss_dssp             TTEEEEEES-SSSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEec-cccccCccCCHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            567777888 5566677776766667776665578999999999999999999888889999999999999999999998


Q ss_pred             CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHHh
Q 041459          105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVSY  172 (225)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~~  172 (225)
                      ++. +.+.+...+...+       ...+.           ....+||+|++++|.            ..+..++..+.++
T Consensus       264 ~~~-~~v~~~~~d~~~~-------~~~~~-----------~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (396)
T 2as0_A          264 GVE-DRMKFIVGSAFEE-------MEKLQ-----------KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL  324 (396)
T ss_dssp             TCG-GGEEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT
T ss_pred             CCC-ccceEEECCHHHH-------HHHHH-----------hhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            875 2455555443211       00000           024689999999986            4467788999999


Q ss_pred             ccCCeEEEEeccC
Q 041459          173 AKPGAVVGISGIL  185 (225)
Q Consensus       173 LkpgG~l~~~~~~  185 (225)
                      |+|||.+++++..
T Consensus       325 LkpgG~lv~~~~~  337 (396)
T 2as0_A          325 VKDGGILVTCSCS  337 (396)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             cCCCcEEEEEECC
Confidence            9999988776443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.62  E-value=4.9e-15  Score=139.71  Aligned_cols=142  Identities=17%  Similarity=0.185  Sum_probs=114.9

Q ss_pred             CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+.+..+.+++...+++|.+..++....++.... +|++|||+|||||.+++.+++.++.+|+++|+|+.+++.|++|+
T Consensus       504 v~E~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~~-~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~  582 (703)
T 3v97_A          504 VTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMS-KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNL  582 (703)
T ss_dssp             EEETTEEEEECSSSSSSCSCCGGGHHHHHHHHHHC-TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred             EEECCEEEEEeccccccCCCcccHHHHHHHHHHhc-CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence            34567788888888889999999998888887654 68999999999999999999888888999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--------------hHHHHHHH
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--------------NPLLQLAD  167 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--------------~~~~~~l~  167 (225)
                      ..+++..+++.+...+...+           +.        .  ..++||+|++++|.              ..+..++.
T Consensus       583 ~~ngl~~~~v~~i~~D~~~~-----------l~--------~--~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~  641 (703)
T 3v97_A          583 RLNGLTGRAHRLIQADCLAW-----------LR--------E--ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMK  641 (703)
T ss_dssp             HHTTCCSTTEEEEESCHHHH-----------HH--------H--CCCCEEEEEECCCSBC-------CCBHHHHHHHHHH
T ss_pred             HHcCCCccceEEEecCHHHH-----------HH--------h--cCCCccEEEECCccccCCccchhHHHHHHHHHHHHH
Confidence            99998644566665443211           00        0  34689999999984              23567899


Q ss_pred             HHHHhccCCeEEEEeccC
Q 041459          168 HIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       168 ~~~~~LkpgG~l~~~~~~  185 (225)
                      .+.++|+|||++++++..
T Consensus       642 ~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          642 DLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             HHHHHEEEEEEEEEEECC
T ss_pred             HHHHhcCCCcEEEEEECC
Confidence            999999999999998765

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.62  E-value=1.3e-14  Score=117.01  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=106.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|++++...++.  .+.+...+...++.          
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~----------  102 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK--NVEVLKSEENKIPL----------  102 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECBTTBCSS----------
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEecccccCCC----------
Confidence            446889999999999999998875  3568999999999999999999887765  36666665544321          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCC------------CcHHHHHHHHHh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILS------------EQLPHIINRYSE  198 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~~~~  198 (225)
                                  +.++||+|+++..+++   ...+++++.++|||||.+++.++..            ....++...+++
T Consensus       103 ------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          103 ------------PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             ------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             ------------CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence                        4678999999888765   4778999999999999999975432            234667777776


Q ss_pred             h-hhhhcccc-cCCceEEEeeeecc
Q 041459          199 F-LEDILLSE-MDDWTCVSGTKKRA  221 (225)
Q Consensus       199 ~-~~~~~~~~-~~~w~~~~~~k~~~  221 (225)
                      . |+.+.... .+.|..+.++|+..
T Consensus       171 ~Gf~~~~~~~~~~~~~~~~~~k~~~  195 (219)
T 3dh0_A          171 AGIRVGRVVEVGKYCFGVYAMIVKQ  195 (219)
T ss_dssp             TTCEEEEEEEETTTEEEEEEECC--
T ss_pred             CCCEEEEEEeeCCceEEEEEEeccc
Confidence            5 76555433 34567777777654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.62  E-value=1.3e-15  Score=119.16  Aligned_cols=109  Identities=18%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. .++.+...+....       ...     
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~-------~~~-----   96 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERA-------IDC-----   96 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHH-------HHH-----
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcHHHh-------HHh-----
Confidence            367899999999999999988887789999999999999999999877764 2344544332110       000     


Q ss_pred             ccccccCCCCCCceeEEEeccchh--HHHHHHHHHH--HhccCCeEEEEeccCCC
Q 041459          137 SSHEIRGISETEKYDVVIANILLN--PLLQLADHIV--SYAKPGAVVGISGILSE  187 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~--~~LkpgG~l~~~~~~~~  187 (225)
                               ....||+|++++++.  .....+..+.  ++|||||.+++.+....
T Consensus        97 ---------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           97 ---------LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             ---------BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             ---------hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence                     235699999999873  3456667776  89999999999766543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.62  E-value=8e-15  Score=124.50  Aligned_cols=106  Identities=10%  Similarity=0.077  Sum_probs=87.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++..+++. + .+++|+|+|+.+++.|+++....++. +++.+...+...              
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~--------------  133 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVRIQGWEE--------------  133 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCS-SCEEEEECCGGG--------------
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECCHHH--------------
Confidence            457889999999999999998876 6 77999999999999999999888765 345565544322              


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHH------------HHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPL------------LQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                 .+++||+|+++.++++.            ..++.++.++|||||.+++.++....
T Consensus       134 -----------~~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  188 (302)
T 3hem_A          134 -----------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD  188 (302)
T ss_dssp             -----------CCCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred             -----------cCCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence                       15689999998887666            78899999999999999997765443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.62  E-value=3.8e-15  Score=124.42  Aligned_cols=131  Identities=12%  Similarity=0.018  Sum_probs=88.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC---------------------------
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK---------------------------  109 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~---------------------------  109 (225)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..+....+                           
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            46789999999999888887777777899999999999999988754321100                           


Q ss_pred             cce-EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-------HHHHHHHHHhccCCeEEEE
Q 041459          110 KMK-LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       110 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-------~~~l~~~~~~LkpgG~l~~  181 (225)
                      .+. +...+.....        .         +.. ...++||+|+++..+++.       ..++.+++++|||||.+++
T Consensus       134 ~i~~~~~~D~~~~~--------~---------~~~-~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~  195 (263)
T 2a14_A          134 AVKRVLKCDVHLGN--------P---------LAP-AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT  195 (263)
T ss_dssp             HEEEEEECCTTSSS--------T---------TTT-CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhheEEeccccCCC--------C---------CCc-cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            011 2222221100        0         000 024589999999887653       5689999999999999999


Q ss_pred             eccCCC---------------cHHHHHHHHHhh-hhhhcc
Q 041459          182 SGILSE---------------QLPHIINRYSEF-LEDILL  205 (225)
Q Consensus       182 ~~~~~~---------------~~~~~~~~~~~~-~~~~~~  205 (225)
                      ++....               ...++.+.+.+. |..+..
T Consensus       196 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~  235 (263)
T 2a14_A          196 TVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL  235 (263)
T ss_dssp             EEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEE
Confidence            854321               455677777764 654444

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.62  E-value=6.9e-15  Score=125.21  Aligned_cols=146  Identities=21%  Similarity=0.190  Sum_probs=106.2

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHH--hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAI--KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~--~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ..+...+.++.+|||+|||+|.++..++  ..+..+++|+|+++.+++.|+++....++. +++.+...+....+     
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----  183 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-GQITLHRQDAWKLD-----  183 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEECCGGGCC-----
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECchhcCC-----
Confidence            3333445678999999999999999874  456778999999999999999999877765 34666665544332     


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEeccCC---------------
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISGILS---------------  186 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~---------------  186 (225)
                                        ..+.||+|+++.++++      ...+++.+.+.|||||.++++++..               
T Consensus       184 ------------------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~  245 (305)
T 3ocj_A          184 ------------------TREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAI  245 (305)
T ss_dssp             ------------------CCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGS
T ss_pred             ------------------ccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeecc
Confidence                              2378999999887754      2347999999999999999876431               


Q ss_pred             -----------------------CcHHHHHHHHHhh-hhhhccc--ccCCceEEEeeee
Q 041459          187 -----------------------EQLPHIINRYSEF-LEDILLS--EMDDWTCVSGTKK  219 (225)
Q Consensus       187 -----------------------~~~~~~~~~~~~~-~~~~~~~--~~~~w~~~~~~k~  219 (225)
                                             ....++.+.+++. |..+...  ..+.|..+.++|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          246 DPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             ccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence                                   1345566666654 6554443  4456778888775

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.61  E-value=7.8e-15  Score=127.28  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=107.3

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ..+...|++............++..+.  ..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|++++..++
T Consensus       167 ~~~~~~~gvf~~~~~d~~~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~  244 (343)
T 2pjd_A          167 LTVKTLPGVFSRDGLDVGSQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG  244 (343)
T ss_dssp             EEEEECTTCTTSSSCCHHHHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT
T ss_pred             eEEEecCCccCCCCCcHHHHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence            344445554322222333444444442  2356799999999999999988764 4589999999999999999998877


Q ss_pred             CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccCCe
Q 041459          106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKPGA  177 (225)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~LkpgG  177 (225)
                      +.   ..+...+....                        ..++||+|++|++++.        ...++..+.+.|||||
T Consensus       245 ~~---~~~~~~d~~~~------------------------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG  297 (343)
T 2pjd_A          245 VE---GEVFASNVFSE------------------------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGG  297 (343)
T ss_dssp             CC---CEEEECSTTTT------------------------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEE
T ss_pred             CC---CEEEEcccccc------------------------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCc
Confidence            64   23444333221                        3568999999998753        4568999999999999


Q ss_pred             EEEEeccCCCcHHHHHHHHHhhhhhhc-ccccCCceEEEeeeecccc
Q 041459          178 VVGISGILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTKKRAKE  223 (225)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~  223 (225)
                      .+++..........   .+...+.... ......+.-+..+|.+.+.
T Consensus       298 ~l~i~~~~~~~~~~---~l~~~f~~~~~~~~~~gf~v~~~~k~r~~~  341 (343)
T 2pjd_A          298 ELRIVANAFLPYPD---VLDETFGFHEVIAQTGRFKVYRAIMTRQAK  341 (343)
T ss_dssp             EEEEEEETTSSHHH---HHHHHHSCCEEEEECSSEEEEEEEC-----
T ss_pred             EEEEEEcCCCCcHH---HHHHhcCceEEEeeCCCEEEEEEEeCCCcc
Confidence            99997554433333   2333333223 3455677777777776654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.61  E-value=8.6e-15  Score=120.00  Aligned_cols=145  Identities=13%  Similarity=0.174  Sum_probs=107.1

Q ss_pred             HHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ++.+...++++.+|+|+|||+|.+++.+++.+ ..+++|+|+++.+++.|++|+..+++. +++.+...++-.       
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~i~~~~~d~l~-------   77 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK-EKIQVRLANGLA-------   77 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGG-------
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEECchhh-------
Confidence            45666778889999999999999999999875 578999999999999999999999987 456776655411       


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL  205 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (225)
                                     .+.+..+||+|++..+. ..+..+++.....|+++|.++++..  .....+++.+.+. |..++.
T Consensus        78 ---------------~l~~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           78 ---------------AFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             ---------------GCCGGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHTTEEEEEE
T ss_pred             ---------------hcccCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHCCCEEEEE
Confidence                           11122369988765443 4478899999999999999999765  4677787777765 544433


Q ss_pred             ---cccCCceEEEeee
Q 041459          206 ---SEMDDWTCVSGTK  218 (225)
Q Consensus       206 ---~~~~~w~~~~~~k  218 (225)
                         .+.+.|..+...+
T Consensus       141 ~lv~e~~~~Yeii~~~  156 (225)
T 3kr9_A          141 SILEEAGKFYEILVVE  156 (225)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEEEECCEEEEEEEEE
Confidence               2344454444333

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=5e-15  Score=124.62  Aligned_cols=133  Identities=15%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .+..+.++|...|......+...  ..+ ..+.++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++|+..
T Consensus        89 ~g~~f~~~~~~~f~~~~~~~e~~--~~~-~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~  165 (272)
T 3a27_A           89 YGCLFKLDVAKIMWSQGNIEERK--RMA-FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL  165 (272)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHH--HHH-TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCEEEEEechhEEECCCchHHHH--HHH-HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            56677778775433222222222  222 33567899999999999999998876 567899999999999999999999


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +++.+  +.+...+...+ .                      ...+||+|++++|. ....++..+.+.|||||+++++|
T Consensus       166 n~l~~--~~~~~~d~~~~-~----------------------~~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~  219 (272)
T 3a27_A          166 NKLNN--VIPILADNRDV-E----------------------LKDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHE  219 (272)
T ss_dssp             TTCSS--EEEEESCGGGC-C----------------------CTTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCC--EEEEECChHHc-C----------------------ccCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEE
Confidence            98764  44555443222 0                      24579999999987 45667888899999999999998


Q ss_pred             cCC
Q 041459          184 ILS  186 (225)
Q Consensus       184 ~~~  186 (225)
                      +..
T Consensus       220 ~~~  222 (272)
T 3a27_A          220 TVA  222 (272)
T ss_dssp             EEE
T ss_pred             cCc
Confidence            865

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.61  E-value=6.9e-15  Score=129.46  Aligned_cols=140  Identities=17%  Similarity=0.207  Sum_probs=108.3

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +.+..+.+++...+.+|.+..++....++...  ++.+|||+|||+|.+++.+++. ..+++++|+++.+++.|++|+..
T Consensus       177 e~g~~f~i~~~~~~~~g~f~~~~~~~~~~~~~--~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~  253 (382)
T 1wxx_A          177 EGRVRYLVDLRAGQKTGAYLDQRENRLYMERF--RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARL  253 (382)
T ss_dssp             ETTEEEEEECSTTSCCCCCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEEchhcccCccccchHHHHHHHHhc--CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH
Confidence            35677788888777778877777777777666  6889999999999999998887 67899999999999999999999


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHH
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVS  171 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~  171 (225)
                      +++.+  +.+...+...+       ...+.           ....+||+|++++|.            ..+..++..+.+
T Consensus       254 n~~~~--~~~~~~d~~~~-------~~~~~-----------~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~  313 (382)
T 1wxx_A          254 NGLGN--VRVLEANAFDL-------LRRLE-----------KEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIK  313 (382)
T ss_dssp             TTCTT--EEEEESCHHHH-------HHHHH-----------HTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCC--ceEEECCHHHH-------HHHHH-----------hcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            98764  55555443211       11000           025689999999986            446678999999


Q ss_pred             hccCCeEEEEeccCC
Q 041459          172 YAKPGAVVGISGILS  186 (225)
Q Consensus       172 ~LkpgG~l~~~~~~~  186 (225)
                      +|+|||.+++++...
T Consensus       314 ~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          314 LLKEGGILATASCSH  328 (382)
T ss_dssp             TEEEEEEEEEEECCT
T ss_pred             hcCCCCEEEEEECCC
Confidence            999999999976543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.61  E-value=8.5e-15  Score=114.95  Aligned_cols=133  Identities=17%  Similarity=0.211  Sum_probs=99.5

Q ss_pred             chHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459           43 ATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  120 (225)
Q Consensus        43 ~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  120 (225)
                      ++...+...+...  ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++..+++. ..+.+...+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~   93 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPE   93 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecCHHH
Confidence            3344444443332  4568899999999999999998877 78999999999999999999887763 234444433211


Q ss_pred             CCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                .+            .....||+|+++.+++++..+++.+.++|+|||.+++..........+.+.+++.
T Consensus        94 ----------~~------------~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~  150 (192)
T 1l3i_A           94 ----------AL------------CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL  150 (192)
T ss_dssp             ----------HH------------TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred             ----------hc------------ccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHC
Confidence                      00            0225799999999888889999999999999999999877666666677676654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.61  E-value=7.6e-15  Score=114.92  Aligned_cols=127  Identities=19%  Similarity=0.135  Sum_probs=94.7

Q ss_pred             CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459           41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  120 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  120 (225)
                      +.+.+..+.+.+.....++.+|||+|||+|.++..+++.+  +++|+|+++.+++.      .     ..+.+...+...
T Consensus         6 P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~-----~~~~~~~~d~~~   72 (170)
T 3q87_B            6 PGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H-----RGGNLVRADLLC   72 (170)
T ss_dssp             CCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C-----SSSCEEECSTTT
T ss_pred             cCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c-----cCCeEEECChhh
Confidence            3455666666665433467899999999999999999887  89999999999977      1     234566655433


Q ss_pred             CCccccccccccccccccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                      . .                      +.++||+|++|+++.+            ....+..+.+.+ |||.+++.+.....
T Consensus        73 ~-~----------------------~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~  128 (170)
T 3q87_B           73 S-I----------------------NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR  128 (170)
T ss_dssp             T-B----------------------CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC
T ss_pred             h-c----------------------ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC
Confidence            2 0                      3478999999999863            345777888888 99999998777778


Q ss_pred             HHHHHHHHHhh-hhhhc
Q 041459          189 LPHIINRYSEF-LEDIL  204 (225)
Q Consensus       189 ~~~~~~~~~~~-~~~~~  204 (225)
                      ..++.+.+++. |....
T Consensus       129 ~~~l~~~l~~~gf~~~~  145 (170)
T 3q87_B          129 PKEVLARLEERGYGTRI  145 (170)
T ss_dssp             HHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHCCCcEEE
Confidence            88888888765 54333

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.60  E-value=3.3e-15  Score=120.16  Aligned_cols=134  Identities=16%  Similarity=0.143  Sum_probs=89.7

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +..+..+++..    .+++...+.+.+...+   .++.+|||+|||+|.+++.+++.+..+|+++|+++.+++.|++++.
T Consensus        23 g~~l~~~~~~~----~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~   98 (202)
T 2fpo_A           23 GRKLPVPDSPG----LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLA   98 (202)
T ss_dssp             TCEEECCCC----------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred             CcEecCCCCCC----CCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence            34555544432    3444444444332221   1678999999999999998877777789999999999999999998


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHH--hccCCeE
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVS--YAKPGAV  178 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~--~LkpgG~  178 (225)
                      .+++.  .+.+...+...+           +        .  ...++||+|+++++++  ....+++.+.+  +|+|||+
T Consensus        99 ~~~~~--~v~~~~~D~~~~-----------~--------~--~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~  155 (202)
T 2fpo_A           99 TLKAG--NARVVNSNAMSF-----------L--------A--QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEAL  155 (202)
T ss_dssp             HTTCC--SEEEECSCHHHH-----------H--------S--SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             HcCCC--cEEEEECCHHHH-----------H--------h--hcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcE
Confidence            88763  355554432111           0        0  0346899999999854  35566777765  5999999


Q ss_pred             EEEeccCC
Q 041459          179 VGISGILS  186 (225)
Q Consensus       179 l~~~~~~~  186 (225)
                      +++++...
T Consensus       156 l~i~~~~~  163 (202)
T 2fpo_A          156 IYVESEVE  163 (202)
T ss_dssp             EEEEEEGG
T ss_pred             EEEEECCC
Confidence            99976543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.60  E-value=1.3e-14  Score=120.32  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=84.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|++++...++.  .+.+...+...++.             
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~l~~-------------   99 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPF-------------   99 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCS-------------
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEecHHhCCC-------------
Confidence            4688999999999999999888754 8999999999999999998877754  36666666554422             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               ++++||+|+++..+++   ...++.++.++|||||.+++.+..
T Consensus       100 ---------~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          100 ---------TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             ---------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ---------CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence                     4678999999987765   467899999999999999996543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.60  E-value=1.1e-14  Score=120.22  Aligned_cols=106  Identities=18%  Similarity=0.250  Sum_probs=88.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. +++.+...+...++.            
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------  110 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGITGSMDNLPF------------  110 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCSS------------
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCC------------
Confidence            3467899999999999999988875558999999999999999999888876 356777766655422            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                +.++||+|+++..+++  ...++..+.++|||||.+++++.
T Consensus       111 ----------~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          111 ----------QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             ----------CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ----------CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                      4678999999877765  67789999999999999999753

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.60  E-value=6.5e-16  Score=123.69  Aligned_cols=158  Identities=13%  Similarity=0.078  Sum_probs=86.8

Q ss_pred             CchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459           42 HATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP  117 (225)
Q Consensus        42 ~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~  117 (225)
                      ++.+..+.+.+....   .++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|++++..++.   .+.+...+
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d   87 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA---VVDWAAAD   87 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC---ceEEEEcc
Confidence            344455555444332   568899999999999999988764 45899999999999999999876654   12232222


Q ss_pred             CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----------------------------HHHHHHH
Q 041459          118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----------------------------LLQLADH  168 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------------------------~~~~l~~  168 (225)
                      ...          .+ ..       .....++||+|++|+|+..                             +..+++.
T Consensus        88 ~~~----------~~-~~-------~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (215)
T 4dzr_A           88 GIE----------WL-IE-------RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL  149 (215)
T ss_dssp             HHH----------HH-HH-------HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC
T ss_pred             hHh----------hh-hh-------hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH
Confidence            110          00 00       0001378999999988632                             1567788


Q ss_pred             HHHhccCCeEEEEeccCCCcHHHHHHHHH--hh-hhhhccc--ccCCceEEEeeeec
Q 041459          169 IVSYAKPGAVVGISGILSEQLPHIINRYS--EF-LEDILLS--EMDDWTCVSGTKKR  220 (225)
Q Consensus       169 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~--~~~~w~~~~~~k~~  220 (225)
                      +.++|||||.+++..........+.+.+.  +. |..+...  ..+..+.+.++|+.
T Consensus       150 ~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~  206 (215)
T 4dzr_A          150 PPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP  206 (215)
T ss_dssp             CGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred             HHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence            89999999995454566667777777776  43 5433332  22333455555443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.60  E-value=2.4e-14  Score=117.53  Aligned_cols=119  Identities=13%  Similarity=0.236  Sum_probs=91.5

Q ss_pred             CCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459           41 EHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  120 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  120 (225)
                      .++........+.  ++++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++..+++.  .+.+...+...
T Consensus         6 ~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~   80 (239)
T 1xxl_A            6 HHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAES   80 (239)
T ss_dssp             CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC--SEEEEECBTTB
T ss_pred             cCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEeccccc
Confidence            3444444444442  4578999999999999999988875 47999999999999999998877765  35666655544


Q ss_pred             CCccccccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                      ++.                      ++++||+|+++..+++   ...++.++.++|||||.+++.+...
T Consensus        81 ~~~----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           81 LPF----------------------PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             CCS----------------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CCC----------------------CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            321                      4678999999877754   5678999999999999999976544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.59  E-value=1.2e-14  Score=121.50  Aligned_cols=127  Identities=15%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh---cCCCCCcceEEEecCCCCCcccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL---NNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++|+..   +++. +++.+...+...+..   ...   
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-~~v~~~~~D~~~~~~---~~~---  107 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS-ARIEVLEADVTLRAK---ARV---  107 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-GGEEEEECCTTCCHH---HHH---
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-ceEEEEeCCHHHHhh---hhh---
Confidence            35789999999999999998875 457899999999999999999987   6664 346666665543200   000   


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEeccCCCcHHH
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISGILSEQLPH  191 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  191 (225)
                               ......++||+|++|+|+..                     +..++..+.++|||||.+++. .......+
T Consensus       108 ---------~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~  177 (260)
T 2ozv_A          108 ---------EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI-SRPQSVAE  177 (260)
T ss_dssp             ---------HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE-ECGGGHHH
T ss_pred             ---------hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE-EcHHHHHH
Confidence                     00003568999999988753                     456789999999999999884 44556677


Q ss_pred             HHHHHHhhh
Q 041459          192 IINRYSEFL  200 (225)
Q Consensus       192 ~~~~~~~~~  200 (225)
                      +.+.+++.|
T Consensus       178 ~~~~l~~~~  186 (260)
T 2ozv_A          178 IIAACGSRF  186 (260)
T ss_dssp             HHHHHTTTE
T ss_pred             HHHHHHhcC
Confidence            777776543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.59  E-value=1.2e-14  Score=113.34  Aligned_cols=120  Identities=15%  Similarity=0.111  Sum_probs=91.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+++. ..+ ....+....          + .
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~-~~~~d~~~~----------~-~   89 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS-DRI-AVQQGAPRA----------F-D   89 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT-TSE-EEECCTTGG----------G-G
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC-CCE-EEecchHhh----------h-h
Confidence            446789999999999999998875 5678999999999999999999887765 234 333332110          0 0


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                              .  ..++||+|+++.++++ ..+++.+.+.|||||.+++.+........+...++..
T Consensus        90 --------~--~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  143 (178)
T 3hm2_A           90 --------D--VPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQF  143 (178)
T ss_dssp             --------G--CCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             --------c--cCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHc
Confidence                    0  1278999999988876 7789999999999999999877666666666666554

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.59  E-value=4.6e-15  Score=116.56  Aligned_cols=127  Identities=19%  Similarity=0.226  Sum_probs=89.3

Q ss_pred             CCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEec
Q 041459           41 EHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVP  117 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~  117 (225)
                      .+++...+.+.+...+   .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++. .++.+...+
T Consensus        24 ~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d  102 (187)
T 2fhp_A           24 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMD  102 (187)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESC
T ss_pred             cCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cceEEEECc
Confidence            3455555544443332   367899999999999999888877788999999999999999999887764 245555443


Q ss_pred             CCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHH--HHhccCCeEEEEeccCC
Q 041459          118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHI--VSYAKPGAVVGISGILS  186 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~--~~~LkpgG~l~~~~~~~  186 (225)
                      ....       ...+ .          ....+||+|++++++.  .....+..+  .++|||||.+++.....
T Consensus       103 ~~~~-------~~~~-~----------~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          103 ANRA-------LEQF-Y----------EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HHHH-------HHHH-H----------HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHH-------HHHH-H----------hcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            3211       0000 0          0256899999999864  345566666  78899999999865543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.59  E-value=2.1e-14  Score=117.92  Aligned_cols=143  Identities=13%  Similarity=0.147  Sum_probs=105.3

Q ss_pred             HHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ++.+...++++.+|+|+|||+|.+++.+++.+ ..+++|+|+++.+++.|++|+..+++. +++.+...++...      
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~-~~I~~~~gD~l~~------   84 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT-SKIDVRLANGLSA------   84 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGG------
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhc------
Confidence            35667778889999999999999999999875 568999999999999999999999986 4677776654221      


Q ss_pred             cccccccccccccccCCCCCCceeEEEe-ccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcc
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILL  205 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (225)
                                      +.+...||+|++ +..-+-+.++++.....|+++|.++++.+.  ....+++.+.+. |..++.
T Consensus        85 ----------------~~~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A           85 ----------------FEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             ----------------CCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHTTEEEEEE
T ss_pred             ----------------cccccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHHHCCCEEEEE
Confidence                            112337998765 444456788999999999999999998653  477777777765 543332


Q ss_pred             c---ccCCceEEEe
Q 041459          206 S---EMDDWTCVSG  216 (225)
Q Consensus       206 ~---~~~~w~~~~~  216 (225)
                      .   +.+.|..+..
T Consensus       147 ~lv~e~~~~Yeii~  160 (230)
T 3lec_A          147 DILTENDKRYEILV  160 (230)
T ss_dssp             EEEEC--CEEEEEE
T ss_pred             EEEEECCEEEEEEE
Confidence            2   3444544433

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=4.7e-14  Score=114.05  Aligned_cols=110  Identities=23%  Similarity=0.218  Sum_probs=85.0

Q ss_pred             HHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccc
Q 041459           49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNER  128 (225)
Q Consensus        49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (225)
                      ...+.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.|+++...++   ..+.+...+...++.     
T Consensus        29 ~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~-----   99 (227)
T 1ve3_A           29 EPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSF-----   99 (227)
T ss_dssp             HHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCS-----
T ss_pred             HHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCC-----
Confidence            344444455688999999999999999888765 89999999999999999987665   235666665543311     


Q ss_pred             ccccccccccccccCCCCCCceeEEEeccc--hh---HHHHHHHHHHHhccCCeEEEEecc
Q 041459          129 VDGIVEDLSSHEIRGISETEKYDVVIANIL--LN---PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~--~~---~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                       +.++||+|+++.+  +.   ....++..+.+.|||||.+++...
T Consensus       100 -----------------~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          100 -----------------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             -----------------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------------CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence                             4568999999887  43   346789999999999999988644

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.59  E-value=2.7e-14  Score=115.33  Aligned_cols=120  Identities=13%  Similarity=0.123  Sum_probs=89.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.  ++.+...+...++             
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~-------------  104 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDLT-------------  104 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCGG-------------
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC--CEEEEeCCHHHHH-------------
Confidence            35789999999999999998875 5678999999999999999999888764  3666665554321             


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                             ...+.+.||+|+++++..+           ...++..+.++|||||.+++.+........+.+.+.+
T Consensus       105 -------~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  171 (214)
T 1yzh_A          105 -------DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ  171 (214)
T ss_dssp             -------GTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             -------hhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence                   0014568999999977531           2578999999999999999975443334444444443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.58  E-value=2.8e-14  Score=114.20  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM  125 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (225)
                      ..+...+...+.++.+|||+|||+|.++..+++.+..+++++|+++.+++.|+++...  .  ..+.+...+...++.  
T Consensus        30 ~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~--~~i~~~~~d~~~~~~--  103 (215)
T 2pxx_A           30 SSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V--PQLRWETMDVRKLDF--  103 (215)
T ss_dssp             HHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C--TTCEEEECCTTSCCS--
T ss_pred             HHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C--CCcEEEEcchhcCCC--
Confidence            3455666666678899999999999999999888766899999999999999988753  1  235566655543321  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccchhH------------------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------------LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                          +.++||+|+++.+++.                  ...+++.+.++|||||.+++.++..
T Consensus       104 --------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          104 --------------------PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             --------------------CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             --------------------CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence                                4578999999877643                  3568999999999999999976654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.57  E-value=7.1e-15  Score=119.90  Aligned_cols=121  Identities=12%  Similarity=0.129  Sum_probs=89.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++ .+..+++|+|+++.+++.|++++..+++.+  +.+...+...       .+..    
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n--v~~~~~Da~~-------~l~~----   99 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN--LRVMCHDAVE-------VLHK----   99 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS--EEEECSCHHH-------HHHH----
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc--EEEEECCHHH-------HHHH----
Confidence            3678999999999999999886 456789999999999999999998888764  5555443321       1110    


Q ss_pred             cccccccCCCCCCceeEEEeccchh-----HH------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN-----PL------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~-----~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                              ..++++||.|+++.+..     +.      ..+++.+.+.|||||.+++.+........+.+.+..
T Consensus       100 --------~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~  165 (218)
T 3dxy_A          100 --------MIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS  165 (218)
T ss_dssp             --------HSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             --------HcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence                    01567899999984422     11      258999999999999999987665555556655554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.57  E-value=1.7e-14  Score=115.99  Aligned_cols=109  Identities=10%  Similarity=-0.001  Sum_probs=78.9

Q ss_pred             HHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC----------CCCCcceEEEecC
Q 041459           50 LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN----------IGPKKMKLHLVPD  118 (225)
Q Consensus        50 ~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~----------~~~~~~~~~~~~~  118 (225)
                      .++... +.++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++.....          .....+.+...+.
T Consensus        13 ~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~   91 (203)
T 1pjz_A           13 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   91 (203)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence            344333 34688999999999999999998865 79999999999999988754210          0013466666666


Q ss_pred             CCCCccccccccccccccccccccCCCCC-CceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEE
Q 041459          119 RTFPASMNERVDGIVEDLSSHEIRGISET-EKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~  181 (225)
                      ..++.                      .. ++||+|+++..+++     ...+++++.++|||||.+++
T Consensus        92 ~~l~~----------------------~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           92 FALTA----------------------RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             SSSTH----------------------HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             ccCCc----------------------ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            54421                      22 67999998766543     34578999999999998444

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.57  E-value=4.4e-15  Score=114.94  Aligned_cols=110  Identities=21%  Similarity=0.296  Sum_probs=80.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+.. ++|+|+++.+++.|++++..+++   ++.+...+....       .... .   
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~-------~~~~-~---  105 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL---GARVVALPVEVF-------LPEA-K---  105 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC---CCEEECSCHHHH-------HHHH-H---
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC---ceEEEeccHHHH-------HHhh-h---
Confidence            6889999999999999999887655 99999999999999999987775   244444332110       0000 0   


Q ss_pred             cccccCCCCCCceeEEEeccchh-HHHHHHHHHH--HhccCCeEEEEeccCCCcH
Q 041459          138 SHEIRGISETEKYDVVIANILLN-PLLQLADHIV--SYAKPGAVVGISGILSEQL  189 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~--~~LkpgG~l~~~~~~~~~~  189 (225)
                             ...++||+|+++++++ .....++.+.  ++|||||.+++++......
T Consensus       106 -------~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~  153 (171)
T 1ws6_A          106 -------AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL  153 (171)
T ss_dssp             -------HTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred             -------ccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence                   0134799999998873 3445566666  9999999999976655443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.57  E-value=3.6e-14  Score=117.06  Aligned_cols=104  Identities=19%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+...+...++             
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------------   99 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGYV-------------   99 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTCC-------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECChHhCC-------------
Confidence            4578899999999999999988754557999999999999999999887765 34666666654431             


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                .+++||+|++...+++   ...++.++.++|||||.+++.+
T Consensus       100 ----------~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          100 ----------ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             ----------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----------cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence                      2567999999877655   4678999999999999999864

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.57  E-value=1.9e-14  Score=124.61  Aligned_cols=144  Identities=19%  Similarity=0.235  Sum_probs=103.8

Q ss_pred             CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+.++.+.+++...|......+.+.   .+.....++.+|||+|||+|.+++. ++ +..+++|+|+++.+++.|++|+
T Consensus       162 ~~e~g~~f~~d~~~~~~~~~~~~er~---~i~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~  236 (336)
T 2yx1_A          162 HKENGYRLWVDIAKVYFSPRLGGERA---RIMKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNI  236 (336)
T ss_dssp             EEETTEEEEEETTTSCCCGGGHHHHH---HHHHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHH
T ss_pred             EEECCEEEEEehHHhccCCccHHHHH---HHHHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHH
Confidence            33467778888875443322222222   3334455789999999999999999 87 6788999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                      ..+++. .++.+...+...+                        . .+||+|++++|... ..++..+.++|+|||.+++
T Consensus       237 ~~n~l~-~~v~~~~~D~~~~------------------------~-~~fD~Vi~dpP~~~-~~~l~~~~~~L~~gG~l~~  289 (336)
T 2yx1_A          237 KLNKLE-HKIIPILSDVREV------------------------D-VKGNRVIMNLPKFA-HKFIDKALDIVEEGGVIHY  289 (336)
T ss_dssp             HHTTCT-TTEEEEESCGGGC------------------------C-CCEEEEEECCTTTG-GGGHHHHHHHEEEEEEEEE
T ss_pred             HHcCCC-CcEEEEECChHHh------------------------c-CCCcEEEECCcHhH-HHHHHHHHHHcCCCCEEEE
Confidence            999875 2456665544322                        2 67999999987543 3778889999999999988


Q ss_pred             eccCCCcHHHHHHHHHh
Q 041459          182 SGILSEQLPHIINRYSE  198 (225)
Q Consensus       182 ~~~~~~~~~~~~~~~~~  198 (225)
                      .++... .....+.+.+
T Consensus       290 ~~~~~~-~~~~~~~l~~  305 (336)
T 2yx1_A          290 YTIGKD-FDKAIKLFEK  305 (336)
T ss_dssp             EEEESS-SHHHHHHHHH
T ss_pred             EEeecC-chHHHHHHHH
Confidence            766554 4444444443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.57  E-value=5.2e-14  Score=116.57  Aligned_cols=129  Identities=11%  Similarity=0.056  Sum_probs=100.2

Q ss_pred             HHHHHhhccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           49 LLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        49 ~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ++.+...++++.+|+|+|||+|.+++.+++.+ ..+++|+|+++.+++.|++|+..+++. +++.+...++...      
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~I~v~~gD~l~~------   84 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-EQIDVRKGNGLAV------   84 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGG------
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEecchhhc------
Confidence            35666778889999999999999999999875 568999999999999999999999986 4567766554221      


Q ss_pred             cccccccccccccccCCCCCCceeEEEec-cchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhh
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIAN-ILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LED  202 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~  202 (225)
                                      +.+..+||+|++. ..-.-+..+++.....|++++.++++..  .....+++.+.+. |..
T Consensus        85 ----------------~~~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~--~~~~~lr~~L~~~Gf~i  143 (244)
T 3gnl_A           85 ----------------IEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN--IAAWQLREWSEQNNWLI  143 (244)
T ss_dssp             ----------------CCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES--SCHHHHHHHHHHHTEEE
T ss_pred             ----------------cCccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC--CChHHHHHHHHHCCCEE
Confidence                            1123359987754 4445678899999999999999999865  3577777777765 543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.57  E-value=6.2e-14  Score=112.59  Aligned_cols=135  Identities=20%  Similarity=0.203  Sum_probs=95.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.   ++     .+...+...+              
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~---~~-----~~~~~d~~~~--------------   97 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRL---GR-----PVRTMLFHQL--------------   97 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---TS-----CCEECCGGGC--------------
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhc---CC-----ceEEeeeccC--------------
Confidence            4468899999999999999988875 47999999999999999886   22     2333332222              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC--------------CcHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS--------------EQLPHIINRY  196 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~~  196 (225)
                               ...++||+|+++..+++     ...++..+.+.|||||.++++....              ....++.+.+
T Consensus        98 ---------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (211)
T 3e23_A           98 ---------DAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARY  168 (211)
T ss_dssp             ---------CCCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHH
T ss_pred             ---------CCCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHH
Confidence                     14678999999887754     4578999999999999999864432              2456666666


Q ss_pred             Hh-h-hhhhccccc---------CCceEEEeeeeccc
Q 041459          197 SE-F-LEDILLSEM---------DDWTCVSGTKKRAK  222 (225)
Q Consensus       197 ~~-~-~~~~~~~~~---------~~w~~~~~~k~~~~  222 (225)
                      ++ . |..+.....         ..|..+...++..-
T Consensus       169 ~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~  205 (211)
T 3e23_A          169 AEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPELE  205 (211)
T ss_dssp             HHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC-
T ss_pred             HhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCccc
Confidence            64 3 544433211         23777777776543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.56  E-value=2.6e-14  Score=117.65  Aligned_cols=142  Identities=17%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.+++.++. .+..+++|+|+++.+++.|++++..+++.+  +.+...+...++.            
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~------------  134 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN--TTFCHDRAETFGQ------------  134 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--EEEEESCHHHHTT------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEeccHHHhcc------------
Confidence            3678999999999999998886 456789999999999999999998888753  6666554322210            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC--CCcHHHHHHHHHhh-hhhhccc------
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL--SEQLPHIINRYSEF-LEDILLS------  206 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~~------  206 (225)
                             .....++||+|+++. ...+..+++.+.++|||||.+++..-.  .++...+.+.++.. +......      
T Consensus       135 -------~~~~~~~fD~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  206 (240)
T 1xdz_A          135 -------RKDVRESYDIVTARA-VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPI  206 (240)
T ss_dssp             -------CTTTTTCEEEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTT
T ss_pred             -------cccccCCccEEEEec-cCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCC
Confidence                   000146899999977 456788999999999999999885321  22333444444443 3222221      


Q ss_pred             ccCCceEEEeeeec
Q 041459          207 EMDDWTCVSGTKKR  220 (225)
Q Consensus       207 ~~~~w~~~~~~k~~  220 (225)
                      ..+.|..+.++|++
T Consensus       207 ~~~~~~l~~~~k~~  220 (240)
T 1xdz_A          207 EESDRNIMVIRKIK  220 (240)
T ss_dssp             TCCEEEEEEEEECS
T ss_pred             CCCceEEEEEEecC
Confidence            12446666666554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.56  E-value=5.8e-14  Score=116.99  Aligned_cols=107  Identities=19%  Similarity=0.322  Sum_probs=87.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....++. +++.+...+...++.            
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~------------  125 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMDLPF------------  125 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCS------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECccccCCC------------
Confidence            3468899999999999999988754578999999999999999998877765 356676666544421            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ++++||+|+++.++++   ...++.++.++|||||.++++++.
T Consensus       126 ----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          126 ----------EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             ----------CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             ----------CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence                      4678999999887764   567899999999999999987653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.56  E-value=2.4e-14  Score=117.50  Aligned_cols=125  Identities=16%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+..+++++|+++.+++.|+++....+.  ..+.+...+...++.              
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~--------------  142 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTP--------------  142 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCC--------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC--ceEEEEEcChhhcCC--------------
Confidence            4789999999999999998877667899999999999999998876531  234455444322211              


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC--------------cHHHHHHHHHh
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE--------------QLPHIINRYSE  198 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~~~  198 (225)
                              ..++||+|+++..+++     +..++..+.++|||||.+++.+....              ...++.+.+.+
T Consensus       143 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  214 (241)
T 2ex4_A          143 --------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICS  214 (241)
T ss_dssp             --------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHH
T ss_pred             --------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHH
Confidence                    3458999999877654     44789999999999999999654221              45667777765


Q ss_pred             h-hhhhccc
Q 041459          199 F-LEDILLS  206 (225)
Q Consensus       199 ~-~~~~~~~  206 (225)
                      . |..+...
T Consensus       215 aGf~~~~~~  223 (241)
T 2ex4_A          215 AGLSLLAEE  223 (241)
T ss_dssp             TTCCEEEEE
T ss_pred             cCCeEEEee
Confidence            5 6555443

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.56  E-value=8.4e-14  Score=112.41  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=81.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CcceEEEecCCCCCcccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGP---KKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++..   .++.+...+....+.         
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---------   98 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK---------   98 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG---------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc---------
Confidence            36789999999999999998886 44789999999999999999987666541   145666655433211         


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                   ..++||+|+++..+++     ...+++.+.++|||||+++++.
T Consensus        99 -------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           99 -------------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             -------------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             -------------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence                         3468999999887763     4678999999999999877753

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.56  E-value=1.6e-14  Score=120.81  Aligned_cols=109  Identities=21%  Similarity=0.218  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM  125 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (225)
                      ..+.++|......+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++        .++.+...+.+.++.  
T Consensus        27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~~--------~~v~~~~~~~e~~~~--   95 (257)
T 4hg2_A           27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALRH--------PRVTYAVAPAEDTGL--   95 (257)
T ss_dssp             HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCCC--------TTEEEEECCTTCCCC--
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhhc--------CCceeehhhhhhhcc--
Confidence            44556666665567899999999999999998876 5799999999999877531        236677777665533  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEeccC
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                          ++++||+|++...+++  ....+.++.++|||||++++.+..
T Consensus        96 --------------------~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A           96 --------------------PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             --------------------CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --------------------cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECC
Confidence                                6789999999877765  567899999999999999886554

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=6.1e-14  Score=109.35  Aligned_cols=129  Identities=16%  Similarity=0.148  Sum_probs=96.3

Q ss_pred             CchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC
Q 041459           42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR  119 (225)
Q Consensus        42 ~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  119 (225)
                      .+....+...+...  ..++.+|||+|||+|.++..+++ +..+++|+|+++.+++.|++++..+++.  .+.+...+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~   93 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK--NCQIIKGRAE   93 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC--SEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEECCcc
Confidence            34444444444333  34678999999999999999888 6778999999999999999999888764  3555444321


Q ss_pred             CCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                      .          .+             +.+.||+|+++.+ .....++..+.+.  |||.+++.........++.+.+++.
T Consensus        94 ~----------~~-------------~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~  147 (183)
T 2yxd_A           94 D----------VL-------------DKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESR  147 (183)
T ss_dssp             H----------HG-------------GGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             c----------cc-------------cCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHc
Confidence            1          01             3468999999988 7778888888888  9999999877666666777666654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.55  E-value=4e-14  Score=124.51  Aligned_cols=114  Identities=19%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhc-----C-CCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALN-----N-IGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ..++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|++++..+     + ....++.+...+...+..    
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~----  156 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT----  156 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG----
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhh----
Confidence            346889999999999999998874  4568999999999999999988754     3 322346666665543300    


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                       ..           ..-.++++||+|+++.++++   ...++.++.++|||||.++++++.
T Consensus       157 -~~-----------~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  205 (383)
T 4fsd_A          157 -AE-----------PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY  205 (383)
T ss_dssp             -CB-----------SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -cc-----------cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence             00           00015678999999988765   578899999999999999997543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.55  E-value=1.5e-13  Score=114.04  Aligned_cols=106  Identities=15%  Similarity=0.156  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM  125 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (225)
                      ..+...+.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..       .+.+...+...++   
T Consensus        38 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~---  106 (263)
T 3pfg_A           38 ADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP-------DAVLHHGDMRDFS---  106 (263)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTCC---
T ss_pred             HHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-------CCEEEECChHHCC---
Confidence            34444555455567899999999999999998875 479999999999999998753       2456666554431   


Q ss_pred             cccccccccccccccccCCCCCCceeEEEecc-chhH------HHHHHHHHHHhccCCeEEEEe
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANI-LLNP------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~~------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                          ..++||+|+++. ++++      ...+++++.++|||||.+++.
T Consensus       107 --------------------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          107 --------------------LGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             --------------------CSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             --------------------ccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                                357899999986 6544      346799999999999999995

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.55  E-value=1.1e-13  Score=111.71  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCC---CcceEEEec
Q 041459           44 TTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGP---KKMKLHLVP  117 (225)
Q Consensus        44 ~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~---~~~~~~~~~  117 (225)
                      ......+.+...  ..++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|++++..+++..   ..+.+...+
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            334444444333  2367899999999999999988864 4789999999999999999987666541   145666655


Q ss_pred             CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459          118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ....+.                      ..++||+|+++..+++     ...+++.+.+.|||||+++..
T Consensus        93 ~~~~~~----------------------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           93 LVYRDK----------------------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             SSSCCG----------------------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             cccccc----------------------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            433211                      3568999999877654     357899999999999977764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.55  E-value=2.3e-14  Score=121.73  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             ccCCCcEEEEcccccHHH-HHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILG-IAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~-~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++ +.+++....+|+|+|+++.+++.|++++...++  +++.+..+++..+             
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl--~~v~~v~gDa~~l-------------  184 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV--DGVNVITGDETVI-------------  184 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC--CSEEEEESCGGGG-------------
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEEEECchhhC-------------
Confidence            568999999999998765 556666667899999999999999999988887  3566766655333             


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                 +++.||+|++.........+++++.+.|||||++++..
T Consensus       185 -----------~d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          185 -----------DGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             -----------GGCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             -----------CCCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence                       45789999987766677889999999999999999864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.55  E-value=7e-14  Score=115.33  Aligned_cols=98  Identities=19%  Similarity=0.290  Sum_probs=80.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++..     ...+.+...+...++.              
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~--------------  104 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAIEDIAI--------------  104 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCGGGCCC--------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcchhhCCC--------------
Confidence            678999999999999999998877689999999999999998765     1335566555433321              


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              +.++||+|+++..+++   ...+++.+.++|||||.++++
T Consensus       105 --------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          105 --------EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             --------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence                    4678999999888765   578899999999999999986

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.55  E-value=1.6e-13  Score=110.65  Aligned_cols=98  Identities=13%  Similarity=0.175  Sum_probs=77.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..      ..+.+...+...++.              
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~--------------  103 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEV--------------  103 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCC--------------
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCC--------------
Confidence            68899999999999999988874 579999999999999998764      124455555444321              


Q ss_pred             cccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccC
Q 041459          138 SHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                              + ++||+|+++..+++.     ..++.++.+.|||||.+++.+..
T Consensus       104 --------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          104 --------P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             --------C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             --------C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence                    3 789999998887652     23899999999999999997543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.54  E-value=8.2e-14  Score=117.65  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=85.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....++. ..+.+...+...++.             
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~-------------  146 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPC-------------  146 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSS-------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEEcCcccCCC-------------
Confidence            467899999999999999988752347999999999999999998877765 356676666554422             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ++++||+|+++..+++   ...++.++.++|||||.+++.+.
T Consensus       147 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          147 ---------EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             ---------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                     4678999999877755   57889999999999999998754

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.54  E-value=6.6e-14  Score=117.67  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=85.8

Q ss_pred             HHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      ++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++...++. ..+.+...+...++        
T Consensus        61 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--------  130 (285)
T 4htf_A           61 VLAEMGPQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVS-DNMQFIHCAAQDVA--------  130 (285)
T ss_dssp             HHHHTCSSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCG-GGEEEEESCGGGTG--------
T ss_pred             HHHhcCCCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEEcCHHHhh--------
Confidence            344444457899999999999999998884 47999999999999999998877764 34566665543331        


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ..             ..++||+|+++.++++   ...++..+.++|||||.+++...
T Consensus       131 ~~-------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          131 SH-------------LETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             GG-------------CSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hh-------------cCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            00             4678999999888764   56789999999999999998654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.54  E-value=1.1e-13  Score=109.47  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=79.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++...+++.+  +.+...+....+               
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~~~~~---------------   93 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN--LHTRVVDLNNLT---------------   93 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTT--EEEEECCGGGCC---------------
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCC--cEEEEcchhhCC---------------
Confidence            57899999999999999988875 479999999999999999988777642  555554433221               


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                              ..++||+|+++.++++     ...+++.+.+.|||||.+++.+
T Consensus        94 --------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           94 --------FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             --------CCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------CCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence                    2567999999877653     5678999999999999987643

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=1.5e-13  Score=109.62  Aligned_cols=124  Identities=14%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .+.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++..       .+.+...+...++.              
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~--------------   98 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP-------SVTFHHGTITDLSD--------------   98 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT-------TSEEECCCGGGGGG--------------
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC-------CCeEEeCccccccc--------------
Confidence            488999999999999999988755 79999999999999987732       24455444332211              


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC---------------cHHHHHHHHH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE---------------QLPHIINRYS  197 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~~  197 (225)
                              +.++||+|+++..+++     ...+++.+.++|||||.++++.....               ...++.+.+.
T Consensus        99 --------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (203)
T 3h2b_A           99 --------SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALE  170 (203)
T ss_dssp             --------SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHH
T ss_pred             --------CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHH
Confidence                    4678999999876644     56789999999999999998764432               3567777777


Q ss_pred             hh-hhhhcccccCCc
Q 041459          198 EF-LEDILLSEMDDW  211 (225)
Q Consensus       198 ~~-~~~~~~~~~~~w  211 (225)
                      +. |+.+........
T Consensus       171 ~~Gf~~~~~~~~~~~  185 (203)
T 3h2b_A          171 TAGFQVTSSHWDPRF  185 (203)
T ss_dssp             HTTEEEEEEEECTTS
T ss_pred             HCCCcEEEEEecCCC
Confidence            65 665554433333

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=2.9e-13  Score=106.33  Aligned_cols=122  Identities=18%  Similarity=0.166  Sum_probs=89.4

Q ss_pred             HHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      ++...+.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++..       .+.+...+....+.       
T Consensus        39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~d~~~~~~-------  103 (195)
T 3cgg_A           39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP-------EARWVVGDLSVDQI-------  103 (195)
T ss_dssp             HHHHHSCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTSCC-------
T ss_pred             HHHHhccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC-------CCcEEEcccccCCC-------
Confidence            444446678999999999999999988875 579999999999999988752       14455555433311       


Q ss_pred             ccccccccccccCCCCCCceeEEEec-cchhH-----HHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-hh
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIAN-ILLNP-----LLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LE  201 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~-~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~~  201 (225)
                                     +.+.||+|+++ ..+++     ...++..+.+.|+|||.+++.....  ....++.+.+.+. |.
T Consensus       104 ---------------~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~  168 (195)
T 3cgg_A          104 ---------------SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLE  168 (195)
T ss_dssp             ---------------CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEE
T ss_pred             ---------------CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCE
Confidence                           45789999998 34433     4678999999999999999864433  3566677666654 54


Q ss_pred             h
Q 041459          202 D  202 (225)
Q Consensus       202 ~  202 (225)
                      .
T Consensus       169 ~  169 (195)
T 3cgg_A          169 L  169 (195)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.54  E-value=6.2e-14  Score=119.69  Aligned_cols=105  Identities=14%  Similarity=0.049  Sum_probs=86.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++..+++. .++.+...+...++.             
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------------  181 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID-DHVRSRVCNMLDTPF-------------  181 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCC-------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhcCCC-------------
Confidence            467899999999999999988763467999999999999999999988876 356777766654421             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +.+.||+|+++..+++  ...++..+.++|||||.+++.+.
T Consensus       182 ---------~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          182 ---------DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             ---------CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                     4678999999877655  57789999999999999998654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.53  E-value=2.1e-13  Score=111.02  Aligned_cols=106  Identities=21%  Similarity=0.236  Sum_probs=83.7

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++....+    .+.+...+...++             
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~-------------  105 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYD-------------  105 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCC-------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccC-------------
Confidence            46789999999999999998875 46789999999999999998875443    3566666655442             


Q ss_pred             cccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccCCCcH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSEQL  189 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~~~~  189 (225)
                                ..++||+|+++.++++.     ..+++++.+.|||||.+++++......
T Consensus       106 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  154 (234)
T 3dtn_A          106 ----------FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGET  154 (234)
T ss_dssp             ----------CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred             ----------CCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence                      23789999998887653     358999999999999999987654433

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.53  E-value=2.5e-14  Score=117.26  Aligned_cols=106  Identities=13%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....+   .++.+...+...+       ...+   
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~-------~~~~---  124 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDV-------APTL---  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHH-------GGGS---
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHh-------hccc---
Confidence            45688999999999999999988766689999999999999999877655   2345544433211       0011   


Q ss_pred             cccccccCCCCCCceeEEEe-ccch-------hHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIA-NILL-------NPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~-~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ++++||+|++ ....       .....++.++.++|||||++++.+.
T Consensus       125 ----------~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          125 ----------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             ----------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             ----------CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence                      4678999999 3321       1234678999999999999998543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.53  E-value=8e-14  Score=113.02  Aligned_cols=111  Identities=19%  Similarity=0.356  Sum_probs=86.2

Q ss_pred             HHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CcceEEEecCCCCCcccccc
Q 041459           52 LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP---KKMKLHLVPDRTFPASMNER  128 (225)
Q Consensus        52 L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  128 (225)
                      +...++++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....++..   ..+.+...+...++.     
T Consensus        24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----   97 (235)
T 3sm3_A           24 IHNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-----   97 (235)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----
T ss_pred             HHHhCCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----
Confidence            33445578999999999999999988875 479999999999999999987766532   235555555544321     


Q ss_pred             ccccccccccccccCCCCCCceeEEEeccchhHH------HHHHHHHHHhccCCeEEEEeccC
Q 041459          129 VDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                       +.++||+|+++..+++.      ..+++.+.++|||||.+++.++.
T Consensus        98 -----------------~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A           98 -----------------HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             -----------------CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -----------------CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence                             46789999998877542      27899999999999999997654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.53  E-value=6.6e-14  Score=115.21  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=93.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+..+++++|+++.+++.|+++....    ..+.+...+...++.             
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~-------------  154 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATL-------------  154 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCC-------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCC-------------
Confidence            357899999999999999988766678999999999999999886543    234555544432211             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC---------------CcHHHHHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS---------------EQLPHIINRY  196 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~  196 (225)
                               +.++||+|+++..+++     ...++.++.++|||||.+++.+...               ....++.+.+
T Consensus       155 ---------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  225 (254)
T 1xtp_A          155 ---------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             ---------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHH
T ss_pred             ---------CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHH
Confidence                     4568999999887755     4678999999999999999976411               1235666666


Q ss_pred             Hhh-hhhhcccccCCc
Q 041459          197 SEF-LEDILLSEMDDW  211 (225)
Q Consensus       197 ~~~-~~~~~~~~~~~w  211 (225)
                      ++. |..+.......|
T Consensus       226 ~~aGf~~~~~~~~~~~  241 (254)
T 1xtp_A          226 NESGVRVVKEAFQEEW  241 (254)
T ss_dssp             HHHTCCEEEEEECTTC
T ss_pred             HHCCCEEEEeeecCCC
Confidence            654 655554443333

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.53  E-value=1.7e-13  Score=112.31  Aligned_cols=107  Identities=12%  Similarity=0.148  Sum_probs=86.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...++. +++.+...+....       ....   
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~---  138 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRIIEGNALEQ-------FENV---  138 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCGGGC-------HHHH---
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHH-------HHhh---
Confidence            36889999999999999998874 4678999999999999999999888875 3566666554221       0000   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ..++||+|+++.....+..+++.+.++|||||++++..+
T Consensus       139 ----------~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          139 ----------NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             ----------TTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             ----------ccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence                      256899999998888888999999999999999998544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.53  E-value=1.2e-13  Score=112.89  Aligned_cols=133  Identities=15%  Similarity=0.097  Sum_probs=95.1

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      .+..++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.. .++.+...+...++    
T Consensus        55 ~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----  128 (235)
T 3lcc_A           55 LIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKA-EYFSFVKEDVFTWR----  128 (235)
T ss_dssp             HHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGG-GGEEEECCCTTTCC----
T ss_pred             HHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCC-cceEEEECchhcCC----
Confidence            3344444333345699999999999999988754 56999999999999999988754432 34566655554431    


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEeccCC----------CcHHH
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILS----------EQLPH  191 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~  191 (225)
                                         +..+||+|+++..++     ....+++.+.++|||||.+++.++..          ....+
T Consensus       129 -------------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  189 (235)
T 3lcc_A          129 -------------------PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVST  189 (235)
T ss_dssp             -------------------CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHH
T ss_pred             -------------------CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHH
Confidence                               355899999987664     45678999999999999999865432          23566


Q ss_pred             HHHHHHhh-hhhhc
Q 041459          192 IINRYSEF-LEDIL  204 (225)
Q Consensus       192 ~~~~~~~~-~~~~~  204 (225)
                      +.+.+.+. |+.+.
T Consensus       190 ~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          190 FEEVLVPIGFKAVS  203 (235)
T ss_dssp             HHHHHGGGTEEEEE
T ss_pred             HHHHHHHcCCeEEE
Confidence            77777664 54433

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.53  E-value=8.7e-14  Score=124.41  Aligned_cols=154  Identities=16%  Similarity=0.123  Sum_probs=104.4

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .+..+.++|+..|......+......++... ..++.+|||+|||+|.+++.+++. ..+++|+|+++.+++.|++|+..
T Consensus       252 ~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~  330 (433)
T 1uwv_A          252 NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARL  330 (433)
T ss_dssp             TTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHH
Confidence            3567777777655433222333333333332 346789999999999999999987 57899999999999999999998


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +++.  ++.+...+....-..     ..+             ..++||+|++|+|+....+++..+. .++|+++++++|
T Consensus       331 ~~~~--~v~f~~~d~~~~l~~-----~~~-------------~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          331 NGLQ--NVTFYHENLEEDVTK-----QPW-------------AKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSC  389 (433)
T ss_dssp             TTCC--SEEEEECCTTSCCSS-----SGG-------------GTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEES
T ss_pred             cCCC--ceEEEECCHHHHhhh-----hhh-------------hcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEEC
Confidence            8875  366666655331000     000             3457999999999876556666555 479999999998


Q ss_pred             cCCCcHHHHHHHHHhhh
Q 041459          184 ILSEQLPHIINRYSEFL  200 (225)
Q Consensus       184 ~~~~~~~~~~~~~~~~~  200 (225)
                      ....-..++.......|
T Consensus       390 ~p~tlard~~~l~~~Gy  406 (433)
T 1uwv_A          390 NPATLARDSEALLKAGY  406 (433)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHhhHHHHHHCCc
Confidence            76655555544433333

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.53  E-value=7.7e-14  Score=113.08  Aligned_cols=119  Identities=15%  Similarity=0.125  Sum_probs=86.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++.+  +.+...+...+        ...    
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n--v~~~~~d~~~l--------~~~----  103 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN--VKLLNIDADTL--------TDV----  103 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS--EEEECCCGGGH--------HHH----
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC--EEEEeCCHHHH--------Hhh----
Confidence            5789999999999999998874 56789999999999999999998887653  55554433221        000    


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                              .+.+.||.|+++.+..+           ...+++.+.+.|||||.+++.+..........+.+.+
T Consensus       104 --------~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  168 (213)
T 2fca_A          104 --------FEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE  168 (213)
T ss_dssp             --------CCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             --------cCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence                    14567999998765321           3578999999999999999976444334444444443

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.52  E-value=1.6e-13  Score=115.36  Aligned_cols=109  Identities=14%  Similarity=0.138  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccc
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASM  125 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (225)
                      ..++..+...  ++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|++++..+++   .+.+...+....+   
T Consensus       110 ~~~~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~---  180 (286)
T 3m70_A          110 GDVVDAAKII--SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL---NISTALYDINAAN---  180 (286)
T ss_dssp             HHHHHHHHHS--CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCGGGCC---
T ss_pred             HHHHHHhhcc--CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC---ceEEEEecccccc---
Confidence            4444444332  688999999999999999998865 799999999999999999988775   2555555443321   


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                          ..++||+|+++.++++     ...+++.+.+.|||||.+++.+
T Consensus       181 --------------------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          181 --------------------IQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             --------------------CCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------------------ccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                                3578999999887754     4578999999999999977743

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.52  E-value=9.3e-14  Score=123.98  Aligned_cols=131  Identities=24%  Similarity=0.329  Sum_probs=94.2

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      .+..+.++|+..|.... .....+...+.. ..++.+|||+|||+|.+++.+++. ..+++|+|+++.+++.|++|+..+
T Consensus       259 ~g~~f~~~~~~F~q~n~-~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~n  335 (425)
T 2jjq_A          259 DDVDYLIHPNSFFQTNS-YQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEIN  335 (425)
T ss_dssp             TTEEEEECTTSCCCSBH-HHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEccccccccCH-HHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            45677777775544322 233333333333 567889999999999999999887 457999999999999999999988


Q ss_pred             CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHH-HHHHHHHhccCCeEEEEec
Q 041459          105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-~l~~~~~~LkpgG~l~~~~  183 (225)
                      ++.   +.+...+...+                        ...+||+|++++|...... +++.+. .|+|+|+++++|
T Consensus       336 gl~---v~~~~~d~~~~------------------------~~~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          336 NVD---AEFEVASDREV------------------------SVKGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             TCC---EEEEECCTTTC------------------------CCTTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEES
T ss_pred             CCc---EEEEECChHHc------------------------CccCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEEC
Confidence            864   56666555433                        1227999999999754333 444443 589999999998


Q ss_pred             cCC
Q 041459          184 ILS  186 (225)
Q Consensus       184 ~~~  186 (225)
                      ...
T Consensus       388 ~p~  390 (425)
T 2jjq_A          388 NPE  390 (425)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.52  E-value=8.1e-14  Score=117.49  Aligned_cols=141  Identities=17%  Similarity=0.167  Sum_probs=101.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  ++...++++...++..+           +.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-----------l~  143 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-----------IA  143 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-----------HH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----------Hh
Confidence            5789999999999999998886 6789999999999999999987542  34334567776654221           00


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLEDI  203 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~~  203 (225)
                              .  ..++||+|+++.+...       ..++++.+.+.|||||++++.....    .....+.+.+++.|..+
T Consensus       144 --------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v  213 (275)
T 1iy9_A          144 --------K--SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPIT  213 (275)
T ss_dssp             --------T--CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred             --------h--CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCe
Confidence                    0  2468999999876421       2578999999999999999964321    22345555666556544


Q ss_pred             ccc-------ccCCceEEEeeee
Q 041459          204 LLS-------EMDDWTCVSGTKK  219 (225)
Q Consensus       204 ~~~-------~~~~w~~~~~~k~  219 (225)
                      ...       ..+.|..+.++|+
T Consensus       214 ~~~~~~vp~~~~g~w~~~~ask~  236 (275)
T 1iy9_A          214 KLYTANIPTYPSGLWTFTIGSKK  236 (275)
T ss_dssp             EEEEECCTTSGGGCEEEEEEESS
T ss_pred             EEEEEecCcccCcceEEEEeeCC
Confidence            432       2678998888775

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.52  E-value=4.8e-14  Score=116.56  Aligned_cols=104  Identities=17%  Similarity=0.161  Sum_probs=82.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++....    ..+.+...+....+.            
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~------------  116 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEF------------  116 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCC------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCC------------
Confidence            4467899999999999999988753467999999999999999876543    245666666544321            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                +.++||+|+++..+++     ...++.++.++|||||.+++.++.
T Consensus       117 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          117 ----------PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             ----------CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ----------CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                      4678999999877655     456899999999999999997653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.52  E-value=1.9e-13  Score=114.83  Aligned_cols=104  Identities=16%  Similarity=0.190  Sum_probs=82.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++.+|||+|||+|.++..+++ .+. +++|+|+++.+++.|++++...++. ..+.+...+...+             
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~-------------  126 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGWEQF-------------  126 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCGGGC-------------
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCC-CCeEEEECChhhC-------------
Confidence            45678999999999999999884 554 8999999999999999998877654 3455555443222             


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                 + ++||+|++..++++     ...+++++.++|||||.+++.++..
T Consensus       127 -----------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          127 -----------D-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             -----------C-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             -----------C-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence                       3 78999999877755     4678999999999999999976643

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.52  E-value=6.2e-14  Score=121.94  Aligned_cols=105  Identities=19%  Similarity=0.225  Sum_probs=84.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..++.+|||+|||+|.+++.++..  +..+++|+|+++.+++.|++|+..+++.  .+.+...+...++.          
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~--~i~~~~~D~~~~~~----------  268 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS--WIRFLRADARHLPR----------  268 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT--TCEEEECCGGGGGG----------
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC--ceEEEeCChhhCcc----------
Confidence            346789999999999999998874  4578999999999999999999988875  46676665543321          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  +...||+|++|+|+..           +..+++.+.+.|||||.+++.+.
T Consensus       269 ------------~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          269 ------------FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             ------------TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             ------------ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                        3456899999999732           36688999999999999998644

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.52  E-value=1e-13  Score=107.48  Aligned_cols=131  Identities=14%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++     .  .++.+...+   .+.            
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~--~~v~~~~~d---~~~------------   71 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F--DSVITLSDP---KEI------------   71 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C--TTSEEESSG---GGS------------
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C--CCcEEEeCC---CCC------------
Confidence            34678999999999999999988764 899999999999999887     1  234455443   211            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCC------------cHHHHHHHHHhhh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSE------------QLPHIINRYSEFL  200 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~~~~~~~  200 (225)
                                +.++||+|+++..+++   ...+++++.+.|||||.+++.++...            ...++.+.+. .|
T Consensus        72 ----------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf  140 (170)
T 3i9f_A           72 ----------PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NF  140 (170)
T ss_dssp             ----------CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TE
T ss_pred             ----------CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-Cc
Confidence                      5678999999887764   57789999999999999999755322            2456666666 66


Q ss_pred             hhhcccccCCc-eEEEeeeec
Q 041459          201 EDILLSEMDDW-TCVSGTKKR  220 (225)
Q Consensus       201 ~~~~~~~~~~w-~~~~~~k~~  220 (225)
                      +.+.....+.+ ..+.++++.
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~  161 (170)
T 3i9f_A          141 VVEKRFNPTPYHFGLVLKRKT  161 (170)
T ss_dssp             EEEEEECSSTTEEEEEEEECC
T ss_pred             EEEEccCCCCceEEEEEecCC
Confidence            66655555543 345555543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.52  E-value=1.5e-13  Score=113.83  Aligned_cols=109  Identities=15%  Similarity=0.238  Sum_probs=87.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+....             
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~-------------  127 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGPALQS-------------  127 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHH-------------
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------------
Confidence            36899999999999999998874 4 678999999999999999999988876 3566666543211             


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                            +......++||+|+++.....+..+++.+.++|||||++++.+..
T Consensus       128 ------l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          128 ------LESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             ------HHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             ------HHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence                  011112458999999988888888999999999999999986554

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.9e-13  Score=114.62  Aligned_cols=118  Identities=14%  Similarity=0.196  Sum_probs=87.2

Q ss_pred             HHHHHHhh-ccCCCcEEEEcccccHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCc
Q 041459           48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPA  123 (225)
Q Consensus        48 ~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~--~~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~  123 (225)
                      +.+.+... ..++.+|||+|||+|.++..+++  .+..+++|+|+++.+++.|++++... +.. .++.+...+...++.
T Consensus        25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~v~~~~~d~~~~~~  103 (299)
T 3g5t_A           25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY-KNVSFKISSSDDFKF  103 (299)
T ss_dssp             HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC-TTEEEEECCTTCCGG
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC-CceEEEEcCHHhCCc
Confidence            34444443 34788999999999999999886  36788999999999999999998776 222 456777776655421


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCeEEEEe
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      .   .....             ..++||+|+++..+++  +..++..+.+.|||||.+++.
T Consensus       104 ~---~~~~~-------------~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          104 L---GADSV-------------DKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             G---CTTTT-------------TSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c---ccccc-------------cCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence            0   00000             1278999999887765  567899999999999999883

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.52  E-value=3.4e-13  Score=110.23  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=77.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +.++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+    .++.+...+.....        .+  
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~--------~~--  137 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQ--------EY--  137 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGG--------GG--
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcc--------cc--
Confidence            446789999999999999998875 6678999999999999999887544    23555555544310        00  


Q ss_pred             ccccccccCCCCCCceeEEEeccchh-HHHHHHHHHHHhccCCeEEEEe
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ......||+|+.+.+.. ....++..+.+.|||||.++++
T Consensus       138 ---------~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          138 ---------ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             ---------TTTSCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cccCccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence                     00126799999765432 3466799999999999999985

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.51  E-value=1.5e-13  Score=112.25  Aligned_cols=110  Identities=20%  Similarity=0.239  Sum_probs=85.4

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      .+...+...+.++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++...     ..+.+...+...++.   
T Consensus        42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~---  112 (242)
T 3l8d_A           42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG-----PDLSFIKGDLSSLPF---  112 (242)
T ss_dssp             THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCB-----TTEEEEECBTTBCSS---
T ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhccc-----CCceEEEcchhcCCC---
Confidence            34455555566789999999999999999988854 799999999999999876421     235566655544321   


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                         +.++||+|+++..+++   ...++..+.+.|||||.++++..
T Consensus       113 -------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          113 -------------------ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             -------------------CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------------CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence                               4678999999887764   56789999999999999999753

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.51  E-value=9.1e-14  Score=118.39  Aligned_cols=141  Identities=13%  Similarity=0.098  Sum_probs=97.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .++...++.+...++..+           +.
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----------l~  158 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-----------VR  158 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----------GG
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----------Hh
Confidence            5689999999999999999886 678999999999999999998754  333224566665543211           00


Q ss_pred             ccccccccCCCCCCceeEEEeccchh--------HHHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhhhhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLN--------PLLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLED  202 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~~  202 (225)
                              .  ..++||+|+++++..        ....+++.+.+.|||||++++....    ......+.+.+++.|..
T Consensus       159 --------~--~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  228 (296)
T 1inl_A          159 --------K--FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPI  228 (296)
T ss_dssp             --------G--CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSE
T ss_pred             --------h--CCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCc
Confidence                    0  246799999987543        1267889999999999999996332    12344555566655554


Q ss_pred             hccc-------ccCCceEEEeeee
Q 041459          203 ILLS-------EMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~~-------~~~~w~~~~~~k~  219 (225)
                      +...       ..+.|.-+.++|+
T Consensus       229 v~~~~~~vp~~p~g~~~f~~as~~  252 (296)
T 1inl_A          229 TRVYLGFMTTYPSGMWSYTFASKG  252 (296)
T ss_dssp             EEEEEEECTTSTTSEEEEEEEESS
T ss_pred             eEEEEeecCccCCCceEEEEecCC
Confidence            4332       2577888777765

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.51  E-value=2.4e-13  Score=110.38  Aligned_cols=123  Identities=13%  Similarity=0.242  Sum_probs=90.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..++.+++.  +..+++++|+++.+++.|++++..+++. +++.+...+....       +...   
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------l~~~---  126 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTILNGASQDL-------IPQL---  126 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHH-------GGGT---
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CceEEEECCHHHH-------HHHH---
Confidence            6789999999999999998874  3578999999999999999999988875 3566666543211       0000   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                            ..-...++||+|+++...+.+.   .++..+ ++|||||++++.+........+.+.++.
T Consensus       127 ------~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~  185 (221)
T 3u81_A          127 ------KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG  185 (221)
T ss_dssp             ------TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH
T ss_pred             ------HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh
Confidence                  0000126899999988766554   355555 9999999999987776666666666654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.51  E-value=4.9e-14  Score=116.00  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=78.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..+|.+|||||||+|..+..+++....+++++|+++.+++.|+++....+.   .+.+...+....       ....   
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~---~~~~~~~~a~~~-------~~~~---  124 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH---KVIPLKGLWEDV-------APTL---  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS---EEEEEESCHHHH-------GGGS---
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC---ceEEEeehHHhh-------cccc---
Confidence            457899999999999999999887667899999999999999998876653   244444432111       1111   


Q ss_pred             cccccccCCCCCCceeEEEeccch--------hHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILL--------NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                +++.||.|+.+...        .....+++++.++|||||++++.
T Consensus       125 ----------~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          125 ----------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             ----------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ----------cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence                      56789999875432        23567899999999999999884

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.51  E-value=1.7e-13  Score=110.35  Aligned_cols=98  Identities=17%  Similarity=0.195  Sum_probs=79.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+    .+.+...+...++               
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~---------------  110 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS----HISWAATDILQFS---------------  110 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS----SEEEEECCTTTCC---------------
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCC----CeEEEEcchhhCC---------------
Confidence            56799999999999999998875 479999999999999998876432    3566666654431               


Q ss_pred             cccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEEec
Q 041459          138 SHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                              +.++||+|+++..+++      ...++..+.++|||||.++++.
T Consensus       111 --------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          111 --------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             --------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence                    4678999999877754      2467999999999999999964

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.51  E-value=1.2e-13  Score=110.53  Aligned_cols=112  Identities=18%  Similarity=0.116  Sum_probs=86.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.++..++.. +..+++++|+++.+++.|++++..+++.+  +.+...+.....              
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~--------------  128 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN--IEPVQSRVEEFP--------------  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS--EEEEECCTTTSC--------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--eEEEecchhhCC--------------
Confidence            4789999999999999988874 66789999999999999999998887653  566655554331              


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  196 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (225)
                               +.++||+|+++. +.++..++..+.++|+|||.+++.. ......++.+..
T Consensus       129 ---------~~~~~D~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~  177 (207)
T 1jsx_A          129 ---------SEPPFDGVISRA-FASLNDMVSWCHHLPGEQGRFYALK-GQMPEDEIALLP  177 (207)
T ss_dssp             ---------CCSCEEEEECSC-SSSHHHHHHHHTTSEEEEEEEEEEE-SSCCHHHHHTSC
T ss_pred             ---------ccCCcCEEEEec-cCCHHHHHHHHHHhcCCCcEEEEEe-CCCchHHHHHHh
Confidence                     346899999875 4567889999999999999998853 333444444433

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.51  E-value=2e-13  Score=112.81  Aligned_cols=131  Identities=14%  Similarity=0.111  Sum_probs=89.7

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---------------------------C
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP---------------------------K  109 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~---------------------------~  109 (225)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...+...                           .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            3568999999999999998887766689999999999999998875433100                           0


Q ss_pred             cc-eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEE
Q 041459          110 KM-KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~  181 (225)
                      .+ .+...+......        .          .-...++||+|+++..++       .+..++.++.++|||||.+++
T Consensus       135 ~v~~~~~~d~~~~~~--------~----------~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~  196 (265)
T 2i62_A          135 AIKQVLKCDVTQSQP--------L----------GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM  196 (265)
T ss_dssp             HEEEEEECCTTSSST--------T----------TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hheeEEEeeeccCCC--------C----------CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Confidence            13 444444332210        0          000227899999988876       466789999999999999998


Q ss_pred             eccCC---------------CcHHHHHHHHHhh-hhhhcc
Q 041459          182 SGILS---------------EQLPHIINRYSEF-LEDILL  205 (225)
Q Consensus       182 ~~~~~---------------~~~~~~~~~~~~~-~~~~~~  205 (225)
                      .+...               -...++.+.+.+. |..+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  236 (265)
T 2i62_A          197 VDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQF  236 (265)
T ss_dssp             EEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             EecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEE
Confidence            65321               1344666777654 654443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.51  E-value=3.1e-13  Score=113.61  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=84.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....+.. ..+.+...+....+.            
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------  128 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHM------------  128 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCC------------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ccEEEEECCcccccc------------
Confidence            4678999999999999999888877778999999999999999998876653 345566655543311            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ...++||+|+++..+++       ...++..+.++|||||.+++...
T Consensus       129 ---------~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          129 ---------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             ---------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ---------CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                     03568999999876643       46789999999999999998654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.51  E-value=1.2e-13  Score=112.85  Aligned_cols=122  Identities=13%  Similarity=0.196  Sum_probs=90.6

Q ss_pred             chHHHHHHHHHhhcc--CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           43 ATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        43 ~~~~~~~~~L~~~~~--~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      +....++..+.....  ++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++..+++.+...+.
T Consensus        39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda  118 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP  118 (221)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence            344444444443322  2349999999999999998873 3 57899999999999999999998887533566665443


Q ss_pred             CCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          119 RTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ...       ...+             ..++||+|+++.....+..+++.+.++|||||++++.+.
T Consensus       119 ~~~-------l~~~-------------~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          119 LDV-------MSRL-------------ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             HHH-------GGGS-------------CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             HHH-------HHHh-------------cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            211       1011             257899999998888888899999999999999999544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.50  E-value=1e-13  Score=121.63  Aligned_cols=99  Identities=21%  Similarity=0.297  Sum_probs=82.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +|++|||+|||+|.+++.+++.|+.+|+|+|.++ +++.|++++..|++. +++.+...+.+.+.               
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~-~~i~~i~~~~~~~~---------------  145 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE-DRVHVLPGPVETVE---------------  145 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT-TTEEEEESCTTTCC---------------
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC-ceEEEEeeeeeeec---------------
Confidence            6899999999999999999999999999999996 889999999999987 56777776665442               


Q ss_pred             cccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEE
Q 041459          138 SHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~  181 (225)
                              .++++|+|++.+...      .+..++....++|||||.++.
T Consensus       146 --------lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          146 --------LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             --------CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             --------CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence                    357899999965421      256677778899999999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.50  E-value=3.3e-13  Score=110.11  Aligned_cols=98  Identities=17%  Similarity=0.156  Sum_probs=77.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.   .+.+...+...++               
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~---------------   97 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLN---------------   97 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCC---------------
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC---CeEEEecccccCC---------------
Confidence            67899999999999999988875 4699999999999999999876654   2445544432221               


Q ss_pred             cccccCCCCCCceeEEEecc-chhH------HHHHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANI-LLNP------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~-~~~~------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              ..++||+|+++. .+++      ...++..+.++|||||.+++.
T Consensus        98 --------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 --------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             --------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --------ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                    236899999987 6544      467899999999999999984

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.50  E-value=2.5e-13  Score=112.23  Aligned_cols=118  Identities=23%  Similarity=0.300  Sum_probs=91.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..+++. +.+.+...+....            
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------------  157 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-DRVTIKLKDIYEG------------  157 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-TTEEEECSCGGGC------------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-CceEEEECchhhc------------
Confidence            457889999999999999998875 4 678999999999999999999888875 3355554443211            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                 .+..+||+|+++++..  ..+++++.+.|||||.+++.+...+...++.+.+++.
T Consensus       158 -----------~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  210 (255)
T 3mb5_A          158 -----------IEEENVDHVILDLPQP--ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREF  210 (255)
T ss_dssp             -----------CCCCSEEEEEECSSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             -----------cCCCCcCEEEECCCCH--HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence                       1456799999987643  5678899999999999999876666666666666543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.50  E-value=1.8e-13  Score=114.03  Aligned_cols=104  Identities=18%  Similarity=0.112  Sum_probs=76.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh----------cCC-----CCCcceEEEecCCCC
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL----------NNI-----GPKKMKLHLVPDRTF  121 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~----------~~~-----~~~~~~~~~~~~~~~  121 (225)
                      .++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|+++...          .+.     ....+.+...+...+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4678999999999999999999876 799999999999999766431          000     112456666555443


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      +.                     ...++||+|+++..+.     ....++..+.++|||||.+++.
T Consensus       146 ~~---------------------~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          146 PR---------------------ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GG---------------------GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             Cc---------------------ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            21                     0137899999876553     2457899999999999998753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.49  E-value=4.5e-13  Score=114.36  Aligned_cols=106  Identities=15%  Similarity=0.159  Sum_probs=83.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +.++.+|||+|||+|.++..+++. +. +++|+|+++.+++.|+++....++. ..+.+...+...+             
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------------  152 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTN-RSRQVLLQGWEDF-------------  152 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCGGGC-------------
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChHHC-------------
Confidence            346889999999999999998875 54 7999999999999999998877765 3455555443221             


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                  +++||+|+++.++++     +..++..+.++|||||.+++.++....
T Consensus       153 ------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          153 ------------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             ------------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             ------------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence                        367999999877654     477899999999999999997665433

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.49  E-value=1.6e-13  Score=111.20  Aligned_cols=111  Identities=15%  Similarity=0.212  Sum_probs=85.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+....       .... . 
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~-~-  133 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPAKDT-------LAEL-I-  133 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHH-------HHHH-H-
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeCCHHHH-------HHHh-h-
Confidence            6789999999999999998874 3 678999999999999999999888876 3466665443111       0000 0 


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                             .-...++||+|+++.+...+..+++.+.++|||||++++.+..
T Consensus       134 -------~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          134 -------HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             -------TTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             -------hccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence                   0001168999999998888889999999999999999996554

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.49  E-value=4.3e-13  Score=106.81  Aligned_cols=101  Identities=19%  Similarity=0.191  Sum_probs=79.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++ +|||+|||+|.++..+++.+. +++|+|+++.+++.|+++....+.   .+.+...+....+.             
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~-------------   90 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFDI-------------   90 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBSC-------------
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcCC-------------
Confidence            356 999999999999999888754 799999999999999999877664   24455544433311             


Q ss_pred             ccccccCCCCCCceeEEEeccch---hHHHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +.+.||+|+++...   .....++..+.++|||||.+++.++
T Consensus        91 ---------~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A           91 ---------VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             ---------CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             ---------CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                     45789999996543   3467789999999999999999754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.49  E-value=3.2e-13  Score=107.87  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..++.....+++|+|+++.+++.|++++...+.   .+.+...+...++.            
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~------------   85 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF---KLNISKGDIRKLPF------------   85 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC---CCCEEECCTTSCCS------------
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEECchhhCCC------------
Confidence            346789999999999885543333345799999999999999998876552   25566655544321            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                +.++||+|+++.++++     ...+++++.+.|||||.+++..+.
T Consensus        86 ----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           86 ----------KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             ----------CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ----------CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence                      4678999999766543     467899999999999999987543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.49  E-value=3.3e-13  Score=112.68  Aligned_cols=104  Identities=21%  Similarity=0.311  Sum_probs=84.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++.+  +.+...+...++.           
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~~~~~~-----------  101 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN--VKFLQANIFSLPF-----------  101 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCGGGCCS-----------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC--cEEEEcccccCCC-----------
Confidence            357889999999999999998875 46789999999999999999998877653  5555554433311           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                 +.++||+|+++..+++   ...++..+.++|||||.+++.+
T Consensus       102 -----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          102 -----------EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             -----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----------CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                       4678999999887755   4678999999999999999864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.49  E-value=3.2e-13  Score=111.27  Aligned_cols=119  Identities=10%  Similarity=0.054  Sum_probs=82.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh------cCCCCCcceEEEecCCCCCccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL------NNIGPKKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      .++.+|||+|||+|.++..+++. +...++|+|+++.+++.|++++..      .+..  ++.+...+....       +
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~--nv~~~~~d~~~~-------l  115 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ--NIACLRSNAMKH-------L  115 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT--TEEEEECCTTTC-------H
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC--eEEEEECcHHHh-------h
Confidence            35678999999999999998875 567899999999999999988753      2333  366666555331       0


Q ss_pred             cccccccccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHH
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  196 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  196 (225)
                                  +...+.+.||.|+++.+..+.           ..+++.+.++|||||.+++............+.+
T Consensus       116 ------------~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l  181 (235)
T 3ckk_A          116 ------------PNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHF  181 (235)
T ss_dssp             ------------HHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred             ------------hhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHH
Confidence                        000146789999988765432           3689999999999999998654433333333333

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.49  E-value=3.9e-13  Score=109.64  Aligned_cols=109  Identities=12%  Similarity=0.054  Sum_probs=82.5

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      .+.+.+... .++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++...      .+.+...+....     
T Consensus        32 ~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~~~~-----   98 (250)
T 2p7i_A           32 FMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD------GITYIHSRFEDA-----   98 (250)
T ss_dssp             HHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS------CEEEEESCGGGC-----
T ss_pred             HHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC------CeEEEEccHHHc-----
Confidence            334444332 3578999999999999999988765 699999999999999987542      244554443221     


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHH-HhccCCeEEEEeccCC
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIV-SYAKPGAVVGISGILS  186 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~-~~LkpgG~l~~~~~~~  186 (225)
                                        .++++||+|+++..+++   ...++.++. +.|||||.+++++...
T Consensus        99 ------------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A           99 ------------------QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             ------------------CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ------------------CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence                              14678999999888765   567899999 9999999999976543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.49  E-value=3.4e-13  Score=108.10  Aligned_cols=109  Identities=18%  Similarity=0.203  Sum_probs=82.9

Q ss_pred             HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ...++.....++.+|||+|||+|.++..+   +..+++|+|+++.+++.|+++.       ..+.+...+...++.    
T Consensus        26 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~----   91 (211)
T 2gs9_A           26 EERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPF----   91 (211)
T ss_dssp             HHHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCS----
T ss_pred             HHHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCC----
Confidence            33455555557889999999999998877   4448999999999999998875       124455544443321    


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                        ++++||+|+++..+++   ...++.++.+.|||||.++++.+....
T Consensus        92 ------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A           92 ------------------PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             ------------------CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             ------------------CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence                              4568999999887755   577899999999999999998765543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.49  E-value=2.2e-13  Score=118.53  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=84.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++++|||+|||+|.++..+++.+..+++|+|+++ +++.|++++..+++. +++.+...+...++.            
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~------------  129 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD-HVVTIIKGKVEEVEL------------  129 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCCC------------
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCC-CcEEEEECcHHHccC------------
Confidence            347899999999999999999998888999999995 999999999988876 457777776655421            


Q ss_pred             cccccccCCCCCCceeEEEeccch------hHHHHHHHHHHHhccCCeEEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~------~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                                +.++||+|+++++.      ..+..++..+.++|||||.+++
T Consensus       130 ----------~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          130 ----------PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             ----------SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ----------CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence                      45789999997642      2356788999999999999874

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.48  E-value=9.5e-14  Score=114.86  Aligned_cols=111  Identities=18%  Similarity=0.253  Sum_probs=86.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++. +++.+...+....       .......
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~-------l~~~~~~  131 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-HKIKLRLGPALDT-------LHSLLNE  131 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-TTEEEEESCHHHH-------HHHHHHH
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------HHHHhhc
Confidence            6789999999999999998874 3 578999999999999999999988876 4566666553211       0000000


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               ...++||+|+++.....+..+++.+.++|||||++++.++.
T Consensus       132 ---------~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          132 ---------GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             ---------HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             ---------cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence                     01468999999988888888999999999999999996543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.48  E-value=2.1e-13  Score=115.20  Aligned_cols=140  Identities=14%  Similarity=0.166  Sum_probs=96.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc--CC-------CCCcceEEEecCCCCCccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN--NI-------GPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ..+.+|||+|||+|.++..+++.+..+++++|+++.+++.|++++ ..  ++       ...++.+...++..+      
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~------  146 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF------  146 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH------
Confidence            357899999999999999988777789999999999999999987 33  22       223456655443211      


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchh-----H--HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHH
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----P--LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRY  196 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~--~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~  196 (225)
                           +        .   ..++||+|+++.+..     .  ..++++.+.+.|+|||++++....    ......+.+.+
T Consensus       147 -----l--------~---~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l  210 (281)
T 1mjf_A          147 -----I--------K---NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEM  210 (281)
T ss_dssp             -----H--------H---HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHH
T ss_pred             -----h--------c---ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH
Confidence                 0        0   146799999987642     1  267889999999999999985321    12234444555


Q ss_pred             Hhhhhhhccc------ccCCceEEEeeee
Q 041459          197 SEFLEDILLS------EMDDWTCVSGTKK  219 (225)
Q Consensus       197 ~~~~~~~~~~------~~~~w~~~~~~k~  219 (225)
                      +..|......      ..+.|.-+.++|+
T Consensus       211 ~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          211 KKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            5445433322      1478998888875

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.48  E-value=1.2e-13  Score=114.82  Aligned_cols=119  Identities=17%  Similarity=0.209  Sum_probs=87.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.+++.++.. +..+++++|+++.+++.|++++..+++.+  +.+...+...++.             
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~--v~~~~~d~~~~~~-------------  144 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG--ARALWGRAEVLAR-------------  144 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--EEEEECCHHHHTT-------------
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc--eEEEECcHHHhhc-------------
Confidence            5789999999999999998864 67889999999999999999999888763  6666655432210             


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc--CCCcHHHHHHHHHh
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI--LSEQLPHIINRYSE  198 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~  198 (225)
                            .....++||+|+++.. ..+..+++.+.++|||||.+++..-  ..++..++...+..
T Consensus       145 ------~~~~~~~fD~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~  201 (249)
T 3g89_A          145 ------EAGHREAYARAVARAV-APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALER  201 (249)
T ss_dssp             ------STTTTTCEEEEEEESS-CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHH
T ss_pred             ------ccccCCCceEEEECCc-CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHH
Confidence                  0002468999999754 3457889999999999999887422  12333444444444

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.48  E-value=2.9e-13  Score=109.62  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=85.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+....       ...+..
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~~~  128 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGLALDS-------LQQIEN  128 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHH-------HHHHHH
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------HHHHHh
Confidence            36889999999999999998875 3 568999999999999999999888875 3466665543211       001000


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ....+||+|+++.+...+..+++.+.++|||||++++.+..
T Consensus       129 ----------~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          129 ----------EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             ----------TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             ----------cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence                      01257999999998888889999999999999999986554

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.48  E-value=1.9e-13  Score=109.63  Aligned_cols=102  Identities=11%  Similarity=0.045  Sum_probs=79.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++..+++.+  +.+...+.....             
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~-------------  138 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHN--VSTRHGDGWQGW-------------  138 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGCC-------------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCc--eEEEECCcccCC-------------
Confidence            457889999999999999998887 5789999999999999999998877653  555555442211             


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               ...++||+|+++..++++.   +.+.+.|||||.+++....
T Consensus       139 ---------~~~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          139 ---------QARAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ---------GGGCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEEECS
T ss_pred             ---------ccCCCccEEEEccchhhhh---HHHHHhcccCcEEEEEEcC
Confidence                     1356899999987665443   3678999999999996443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=6.4e-13  Score=111.38  Aligned_cols=105  Identities=24%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++ ...+++|+|+++.+++.|+++.       ..+.+...+...++              
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~--------------  113 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFR--------------  113 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCC--------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCC--------------
Confidence            4678999999999999999888 4568999999999999998764       12446665554442              


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHI  192 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (225)
                               ..++||+|+++..+++   ...++.++.+.|||||.+++..........+
T Consensus       114 ---------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  163 (279)
T 3ccf_A          114 ---------VDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI  163 (279)
T ss_dssp             ---------CSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred             ---------cCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHH
Confidence                     2468999999988765   5678999999999999999976654443333

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.48  E-value=3e-13  Score=114.60  Aligned_cols=48  Identities=35%  Similarity=0.412  Sum_probs=40.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      ++++|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence            5889999999999999998874 67789999999999999999876543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.47  E-value=3.7e-13  Score=111.11  Aligned_cols=101  Identities=20%  Similarity=0.271  Sum_probs=80.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++ ....  ..+.+...+...++.            
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~~--~~~~~~~~d~~~~~~------------  100 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGVD--RKVQVVQADARAIPL------------  100 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTSC--TTEEEEESCTTSCCS------------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hccC--CceEEEEcccccCCC------------
Confidence            4568899999999999999988874 57999999999999999887 2222  346666665544321            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                ++++||+|+++..+++   ...++.++.+.|||||.+++.
T Consensus       101 ----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          101 ----------PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ----------CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----------CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence                      4678999999888765   467899999999999999986

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=2.5e-13  Score=111.49  Aligned_cols=110  Identities=10%  Similarity=0.075  Sum_probs=81.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++...     ..+.+...+...++.     ...+   
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~-----~~~~---  119 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-----ANISYRLLDGLVPEQ-----AAQI---  119 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-----TTEEEEECCTTCHHH-----HHHH---
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-----cCceEEECccccccc-----cccc---
Confidence            55788999999999999999988765 799999999999999987621     235566555543210     0000   


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                               .....||+|+++..+++     ...++.++.++|||||.+++.++....
T Consensus       120 ---------~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  168 (245)
T 3ggd_A          120 ---------HSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC  168 (245)
T ss_dssp             ---------HHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred             ---------ccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence                     01124899999877654     568899999999999999887776544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.47  E-value=4.9e-13  Score=114.24  Aligned_cols=143  Identities=16%  Similarity=0.163  Sum_probs=98.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .+....++.+...++..+.       ... 
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~-------~~~-  165 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV-------RQT-  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH-------HSS-
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH-------Hhc-
Confidence            45789999999999999998876 567899999999999999998742  1222234666655432210       000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHH-------HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhh-hh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEF-LE  201 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~-~~  201 (225)
                                  ..++||+|+++.+....       ..+++.+.+.|||||++++.....    .....+.+.+++. |.
T Consensus       166 ------------~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~  233 (304)
T 3bwc_A          166 ------------PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFA  233 (304)
T ss_dssp             ------------CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCS
T ss_pred             ------------cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCC
Confidence                        25689999998765331       578999999999999999853321    2345566666665 65


Q ss_pred             hhccc-------ccCCceEEEeeee
Q 041459          202 DILLS-------EMDDWTCVSGTKK  219 (225)
Q Consensus       202 ~~~~~-------~~~~w~~~~~~k~  219 (225)
                      .+...       ..+.|.-+.+.|+
T Consensus       234 ~v~~~~~~vP~yp~g~w~f~~as~~  258 (304)
T 3bwc_A          234 SVQYALMHVPTYPCGSIGTLVCSKK  258 (304)
T ss_dssp             EEEEEECCCTTSTTSCCEEEEEESS
T ss_pred             cEEEEEeecccccCcceEEEEEeCC
Confidence            44322       3578988888775

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.47  E-value=6.4e-13  Score=115.19  Aligned_cols=101  Identities=29%  Similarity=0.315  Sum_probs=82.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+..+++|+|+++ +++.|++++..+++. +++.+...+...++.            
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~------------  127 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE-DTITLIKGKIEEVHL------------  127 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCC------------
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC-CcEEEEEeeHHHhcC------------
Confidence            346889999999999999999988877999999997 999999999888874 356777666554421            


Q ss_pred             cccccccCCCCCCceeEEEeccc---h---hHHHHHHHHHHHhccCCeEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANIL---L---NPLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~---~---~~~~~~l~~~~~~LkpgG~l~  180 (225)
                                +.++||+|+++++   +   ..+..++..+.++|||||.++
T Consensus       128 ----------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 ----------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ----------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence                      4578999999873   2   235678899999999999997

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.47  E-value=7.1e-13  Score=110.99  Aligned_cols=104  Identities=18%  Similarity=0.163  Sum_probs=78.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  134 (225)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++++..+.     +.....+... ...           
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~~-----------  105 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAEIPK-----------  105 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSCCCG-----------
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcc-----ceeeeeeccccccc-----------
Confidence            4568899999999999999999876 479999999999999999876441     2333333221 000           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                                ...++||+|+++..+++     ....+..+.++| |||.+++++....
T Consensus       106 ----------~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~  152 (261)
T 3iv6_A          106 ----------ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF  152 (261)
T ss_dssp             ----------GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred             ----------ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence                      02568999999887653     456889999999 9999999866543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.47  E-value=2.2e-12  Score=103.42  Aligned_cols=99  Identities=14%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++    .+..  .+.+...+...+              
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~----~~~~--~~~~~~~d~~~~--------------  102 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR----HGLD--NVEFRQQDLFDW--------------  102 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG----GCCT--TEEEEECCTTSC--------------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh----cCCC--CeEEEecccccC--------------
Confidence            3457899999999999999988874 479999999999999986    3322  355665554332              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               .+.++||+|+++..+++     ...+++++.+.|||||.+++.+.
T Consensus       103 ---------~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          103 ---------TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             ---------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                     15778999999887755     36789999999999999998755

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.47  E-value=2.7e-13  Score=115.80  Aligned_cols=113  Identities=17%  Similarity=0.126  Sum_probs=76.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC----cceEEEecCCCCCccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK----KMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+....    .+.+...+...-..   .  .   
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~---~--~---  119 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF---V--S---  119 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH---H--H---
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchh---h--h---
Confidence            3789999999999866666666667899999999999999998765543210    12233332211000   0  0   


Q ss_pred             cccccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                            .++...+.++||+|+|...++      +...++.++.++|||||.++++..
T Consensus       120 ------~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          120 ------SVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             ------HHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------hhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence                  000011456899999977654      357889999999999999998755

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.47  E-value=1.3e-13  Score=114.07  Aligned_cols=111  Identities=18%  Similarity=0.195  Sum_probs=77.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHhc---CCCCC----------------------
Q 041459           58 GGELFLDYGTGSGILGIAAIKF---GAAMSVGVDIDPQAIKSAHQNAALN---NIGPK----------------------  109 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~~~~~---~~~~~----------------------  109 (225)
                      ++.+|||+|||+|.+++.+++.   +..+++|+|+|+.+++.|++++..+   ++.+.                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4679999999999999988764   4568999999999999999988755   33210                      


Q ss_pred             --cce-------------EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------------H
Q 041459          110 --KMK-------------LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------L  162 (225)
Q Consensus       110 --~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~  162 (225)
                        .+.             +...+.....       ...          ......+||+|++|+|+..            +
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~-------~~~----------~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~  193 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPR-------ALS----------AVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV  193 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGG-------GHH----------HHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred             hhhhhhhccccccccccceeeccccccc-------ccc----------cccCCCCceEEEeCCCeeccccccccccccHH
Confidence              033             4433322110       000          0001237999999988643            3


Q ss_pred             HHHHHHHHHhccCCeEEEEeccC
Q 041459          163 LQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       163 ~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                      ..++..+.++|||||++++++..
T Consensus       194 ~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          194 AGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEESS
T ss_pred             HHHHHHHHHhcCCCcEEEEeCcc
Confidence            47899999999999999985443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.46  E-value=4.9e-13  Score=114.06  Aligned_cols=113  Identities=15%  Similarity=0.009  Sum_probs=82.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCcceEEEecCCCCCccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI-----GPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....+.     ....+.+...+....+.     .. 
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~-  106 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELL-----ID-  106 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCS-----TT-
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccch-----hh-
Confidence            36789999999999999988877777899999999999999998765421     11235566665544310     00 


Q ss_pred             cccccccccccCCC-CCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC
Q 041459          132 IVEDLSSHEIRGIS-ETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       132 ~~~~~~~~~~~~~~-~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                 .+. +.++||+|+++..+++       ...++.++.++|||||.++++....
T Consensus       107 -----------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          107 -----------KFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             -----------TCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             -----------hcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence                       000 2358999999887744       3578999999999999999976643

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.46  E-value=4e-13  Score=115.93  Aligned_cols=143  Identities=18%  Similarity=0.236  Sum_probs=94.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhc-------CCC--CCcceEEEecCCCCCcc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALN-------NIG--PKKMKLHLVPDRTFPAS  124 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~  124 (225)
                      +.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.|++++...       ++.  ...+.+...+...... 
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-  181 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-  181 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-
Confidence            457899999999999999998875 44 78999999999999999998743       221  1245666655433210 


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh---h-
Q 041459          125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF---L-  200 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---~-  200 (225)
                            .+             +.+.||+|+++.+..  ..++..+.+.|||||.+++......+...+.+.+++.   + 
T Consensus       182 ------~~-------------~~~~fD~V~~~~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~  240 (336)
T 2b25_A          182 ------DI-------------KSLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALS  240 (336)
T ss_dssp             -------------------------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEE
T ss_pred             ------cc-------------CCCCeeEEEECCCCH--HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcc
Confidence                  00             345799999986543  2368899999999999998766555666666655542   1 


Q ss_pred             -hhhcccccCCceEEEeeeec
Q 041459          201 -EDILLSEMDDWTCVSGTKKR  220 (225)
Q Consensus       201 -~~~~~~~~~~w~~~~~~k~~  220 (225)
                       ..+.......|..+.++|+.
T Consensus       241 ~~~~~~~~~~~w~~~~~~~~~  261 (336)
T 2b25_A          241 CEKISEVIVRDWLVCLAKQKN  261 (336)
T ss_dssp             EEEEECCCCCCEEECC-----
T ss_pred             cceEEEecccceEEEeecccc
Confidence             11223345679887666544

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.46  E-value=4.3e-13  Score=115.51  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=97.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  +++...++++...++..+           +.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~-----------l~  184 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----------LE  184 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----------HH
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH-----------Hh
Confidence            5689999999999999998886 578899999999999999998765  233223456665443211           00


Q ss_pred             ccccccccCCCCCCceeEEEeccc--hhH----H-HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANIL--LNP----L-LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLEDI  203 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~--~~~----~-~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~~  203 (225)
                              .  ..++||+|+++++  ..+    + ..+++.+.+.|||||++++.....    +....+.+.+++.|..+
T Consensus       185 --------~--~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v  254 (321)
T 2pt6_A          185 --------N--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKV  254 (321)
T ss_dssp             --------H--CCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred             --------h--cCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCe
Confidence                    0  2467999999873  211    1 688999999999999999853221    23344555555555443


Q ss_pred             ccc-------ccCCceEEEeeee
Q 041459          204 LLS-------EMDDWTCVSGTKK  219 (225)
Q Consensus       204 ~~~-------~~~~w~~~~~~k~  219 (225)
                      ...       ..|.|.-+.++|+
T Consensus       255 ~~~~~~vp~~~~g~w~f~~as~~  277 (321)
T 2pt6_A          255 EYANISIPTYPCGCIGILCCSKT  277 (321)
T ss_dssp             EEEEEECTTSGGGEEEEEEEESS
T ss_pred             EEEEEEeccccCceEEEEEeeCC
Confidence            322       3468887777765

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.46  E-value=8.3e-13  Score=113.86  Aligned_cols=101  Identities=25%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+..+++|+|++ .+++.|++++..+++. +++.+...+....+.             
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~-------------  101 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS-DKITLLRGKLEDVHL-------------  101 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT-TTEEEEESCTTTSCC-------------
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC-CCEEEEECchhhccC-------------
Confidence            4788999999999999999998888899999999 5999999999888875 456676666544321             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH------HHHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~------~~~~l~~~~~~LkpgG~l~~  181 (225)
                               +.++||+|+++++.+.      +..++..+.++|||||.++.
T Consensus       102 ---------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          102 ---------PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ---------SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ---------CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence                     3478999999865322      56788889999999999974

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.46  E-value=7.9e-13  Score=116.00  Aligned_cols=139  Identities=16%  Similarity=0.086  Sum_probs=95.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++.+|||+|||+|.+++.++..+. .+++|+|+++.+++.|++|+..+++. +.+.+...+...++.           
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~-~~i~~~~~D~~~~~~-----------  282 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL-DKIKFIQGDATQLSQ-----------  282 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG-GGCEEEECCGGGGGG-----------
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCc-----------
Confidence            45788999999999999999988754 47999999999999999999988874 356677665543321           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LED  202 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~  202 (225)
                                 +.++||+|++|+|+..           +..+++.+.+.| .|+.+++++    +...+.+.+.+. +..
T Consensus       283 -----------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~----~~~~~~~~~~~~G~~~  346 (373)
T 3tm4_A          283 -----------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT----EKKAIEEAIAENGFEI  346 (373)
T ss_dssp             -----------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEES----CHHHHHHHHHHTTEEE
T ss_pred             -----------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC----CHHHHHHHHHHcCCEE
Confidence                       3578999999999642           356788888888 444444432    344444555442 332


Q ss_pred             ---hcccccCCceEEEeeeeccc
Q 041459          203 ---ILLSEMDDWTCVSGTKKRAK  222 (225)
Q Consensus       203 ---~~~~~~~~w~~~~~~k~~~~  222 (225)
                         ......+-++.+...++..+
T Consensus       347 ~~~~~~~nG~l~~~~~~~~~~~~  369 (373)
T 3tm4_A          347 IHHRVIGHGGLMVHLYVVKLEHH  369 (373)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTC
T ss_pred             EEEEEEEcCCEEEEEEeccCccC
Confidence               22334444556655555443

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.46  E-value=5.5e-13  Score=108.85  Aligned_cols=99  Identities=18%  Similarity=0.276  Sum_probs=78.6

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|+++....     .+.+...+...++.              
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~d~~~~~~--------------  103 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT-----GITYERADLDKLHL--------------  103 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS-----SEEEEECCGGGCCC--------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC-----CceEEEcChhhccC--------------
Confidence            67899999999999999998887668999999999999998875432     24455544332211              


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                              +.++||+|+++.++++   ...++..+.+.|||||.++++.
T Consensus       104 --------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 --------PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             --------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence                    4678999999887765   5778999999999999999864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.46  E-value=3.9e-13  Score=118.07  Aligned_cols=101  Identities=26%  Similarity=0.256  Sum_probs=82.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|++++..+++. +++.+...+...++              
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--------------  125 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD-HIVEVIEGSVEDIS--------------  125 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT-TTEEEEESCGGGCC--------------
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC-CeEEEEECchhhcC--------------
Confidence            4688999999999999999999888899999999 9999999999988876 45667666554331              


Q ss_pred             ccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ..++||+|+++++.+      .+..++..+.++|||||.++++
T Consensus       126 ---------~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          126 ---------LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             ---------CSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             ---------cCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence                     237899999977432      2566889999999999999874

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.45  E-value=1.3e-12  Score=110.26  Aligned_cols=159  Identities=16%  Similarity=0.050  Sum_probs=93.5

Q ss_pred             cCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeC-CHHHHHHHHHHHHhc-----CCCC-
Q 041459           38 GTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDI-DPQAIKSAHQNAALN-----NIGP-  108 (225)
Q Consensus        38 ~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi-~~~~l~~a~~~~~~~-----~~~~-  108 (225)
                      +...++....+.+++....  .++.+|||+|||+|.+++.+++.+..+|+++|+ ++.+++.|++|+..|     ++.. 
T Consensus        57 g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~  136 (281)
T 3bzb_A           57 TSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETV  136 (281)
T ss_dssp             -----CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC--------
T ss_pred             CceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccC
Confidence            4344555666666665543  468899999999999999999888778999999 899999999999433     3210 


Q ss_pred             --CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccc-hh--HHHHHHHHHHHhcc---C--CeE
Q 041459          109 --KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANIL-LN--PLLQLADHIVSYAK---P--GAV  178 (225)
Q Consensus       109 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~-~~--~~~~~l~~~~~~Lk---p--gG~  178 (225)
                        ..+.+...+......   .....+             ...+||+|++..+ ++  .+..+++.+.++|+   |  ||.
T Consensus       137 ~~~~v~~~~~~~~~~~~---~~~~~~-------------~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~  200 (281)
T 3bzb_A          137 KRASPKVVPYRWGDSPD---SLQRCT-------------GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAV  200 (281)
T ss_dssp             --CCCEEEECCTTSCTH---HHHHHH-------------SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCE
T ss_pred             CCCCeEEEEecCCCccH---HHHhhc-------------cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCE
Confidence              123333222111000   000000             2467999998443 32  36788999999999   9  998


Q ss_pred             EEEeccCC-----CcHHHHHHHHHh-h-hhhhcccccCCce
Q 041459          179 VGISGILS-----EQLPHIINRYSE-F-LEDILLSEMDDWT  212 (225)
Q Consensus       179 l~~~~~~~-----~~~~~~~~~~~~-~-~~~~~~~~~~~w~  212 (225)
                      +++.....     .....+.+.+.+ . |..........|.
T Consensus       201 l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~  241 (281)
T 3bzb_A          201 ALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMD  241 (281)
T ss_dssp             EEEEECC--------CTHHHHHHHHSTTEEEEEEECCC---
T ss_pred             EEEEEEeeecccchhHHHHHHHHHhcCCEEEEEeccccccc
Confidence            76642221     123344444443 3 4444444556664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=1.4e-12  Score=107.53  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=82.4

Q ss_pred             HHHHHhh-ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        49 ~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      ..++... ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++.       ..+.+...+...++    
T Consensus        23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~----   91 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------PNTNFGKADLATWK----   91 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------TTSEEEECCTTTCC----
T ss_pred             HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------CCcEEEECChhhcC----
Confidence            3444433 346789999999999999988764 4567999999999999998771       23556665554431    


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                         ..++||+|+++..+++   ...++.++.+.|||||.++++...
T Consensus        92 -------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           92 -------------------PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             -------------------CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             -------------------ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence                               3568999999988765   467899999999999999997643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.45  E-value=2.7e-13  Score=113.86  Aligned_cols=117  Identities=25%  Similarity=0.259  Sum_probs=89.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ..++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++..+ +..  .+.+...+....           
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~--~v~~~~~d~~~~-----------  174 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG--NVRTSRSDIADF-----------  174 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT--TEEEECSCTTTC-----------
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC--cEEEEECchhcc-----------
Confidence            456889999999999999998875  4678999999999999999998877 643  355555444321           


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                  .+.+.||+|+++++-  ...+++.+.+.|||||.+++.+.......++.+.+.+.
T Consensus       175 ------------~~~~~fD~Vi~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~  227 (275)
T 1yb2_A          175 ------------ISDQMYDAVIADIPD--PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSAS  227 (275)
T ss_dssp             ------------CCSCCEEEEEECCSC--GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGG
T ss_pred             ------------CcCCCccEEEEcCcC--HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence                        045689999997653  35678899999999999999876655555665555543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.45  E-value=5.4e-13  Score=108.93  Aligned_cols=108  Identities=15%  Similarity=0.223  Sum_probs=84.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...++. ..+.+...+....       ....   
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~~~~---  121 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELLFGDALQL-------GEKL---  121 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCGGGS-------HHHH---
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHH-------HHhc---
Confidence            36889999999999999998875 4678999999999999999999888764 2455554433211       0000   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ...+.||+|+++.+...+..+++.+.+.|||||.+++.++
T Consensus       122 ---------~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          122 ---------ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             ---------TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             ---------ccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence                     0146899999999888888999999999999999999754

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.45  E-value=4.7e-13  Score=112.67  Aligned_cols=108  Identities=20%  Similarity=0.226  Sum_probs=78.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC--CcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP--KKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++....+...  ..+.+...+...++.           
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------  123 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-----------  123 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-----------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc-----------
Confidence            3678999999999999999988865 89999999999999998875433221  123333333222100           


Q ss_pred             ccccccccCCCCCCceeEEEec-cchhH----------HHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISETEKYDVVIAN-ILLNP----------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~-~~~~~----------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              .+...++||+|+++ ..+++          ...+++++.++|||||.+++...
T Consensus       124 --------~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          124 --------DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             --------HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --------ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                    00146789999997 55533          56789999999999999998644

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.45  E-value=1.2e-12  Score=106.72  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=82.5

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      ...+.+...+.++.+|||+|||+|.++..+++.  .+++|+|+++.+++.|+++...++.   .+.+...+....+    
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~----   92 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNR---HVDFWVQDMRELE----   92 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTC---CCEEEECCGGGCC----
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCC---ceEEEEcChhhcC----
Confidence            334445555667899999999999999998877  7899999999999999999876552   2455554433221    


Q ss_pred             ccccccccccccccccCCCCCCceeEEEecc-chh------HHHHHHHHHHHhccCCeEEEEec
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~------~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                         ..++||+|+++. .++      ....+++.+.++|||||.+++..
T Consensus        93 -------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           93 -------------------LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             -------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------------------CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence                               236899999865 443      34678999999999999999853

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.45  E-value=3.8e-13  Score=115.43  Aligned_cols=142  Identities=18%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cC-CCCCcceEEEecCCCCCcccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NN-IGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  .+ +...++.+...++..+           
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-----------  144 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-----------  144 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-----------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-----------
Confidence            35689999999999999998876 567899999999999999998764  12 2224566666544221           


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH----------HHHHHHHHHHhccCCeEEEEeccC-----CCcHHHHHHHHH
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP----------LLQLADHIVSYAKPGAVVGISGIL-----SEQLPHIINRYS  197 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~~  197 (225)
                      +.        .  ..++||+|+++.+.+.          ...+++.+.+.|||||++++....     .+....+.+.++
T Consensus       145 l~--------~--~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~  214 (314)
T 1uir_A          145 LE--------R--TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR  214 (314)
T ss_dssp             HH--------H--CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred             HH--------h--cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHH
Confidence            00        0  3568999999876533          367899999999999999985321     233455666666


Q ss_pred             hhhhhhccc------ccCCceEEEeeee
Q 041459          198 EFLEDILLS------EMDDWTCVSGTKK  219 (225)
Q Consensus       198 ~~~~~~~~~------~~~~w~~~~~~k~  219 (225)
                      +.|..+...      ..+.|.-+.++|+
T Consensus       215 ~~F~~v~~~~~~vP~~~g~~~~~~as~~  242 (314)
T 1uir_A          215 EAFRYVRSYKNHIPGFFLNFGFLLASDA  242 (314)
T ss_dssp             TTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             HHCCceEEEEEecCCCCCeEEEEEEECC
Confidence            655443322      2467887777765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.45  E-value=8.5e-13  Score=108.96  Aligned_cols=106  Identities=15%  Similarity=0.068  Sum_probs=79.3

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhc--------CCCCCcceEEEecCCCCCccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALN--------NIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      .++.+|||+|||+|.+++.+++.+ ..+++|+|+++.+++.|++++..+        ++.  ++.+...+....      
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--nv~~~~~D~~~~------  119 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ--NINVLRGNAMKF------  119 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT--TEEEEECCTTSC------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC--cEEEEeccHHHH------
Confidence            367899999999999999988764 458999999999999999998765        553  355665554321      


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEec
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                   ++...+...+|.|+++.+..+.           ..++..+.++|||||.+++.+
T Consensus       120 -------------l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          120 -------------LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             -------------GGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------------HHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence                         0111146789999876554332           478999999999999999853

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.45  E-value=6.8e-13  Score=108.43  Aligned_cols=106  Identities=16%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.+.+++..+    ..+.+...+.....     .. .. 
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~-----~~-~~-  143 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPH-----KY-RM-  143 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGG-----GG-GG-
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChh-----hh-cc-
Confidence            456889999999999999998875  4578999999999988888777654    23555554443310     00 00 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ..++||+|+++++... ...++.++.+.|||||.+++++.
T Consensus       144 ------------~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          144 ------------LIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             ------------GCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------cCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence                        3568999999887433 34568889999999999999644

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.45  E-value=6.9e-13  Score=117.14  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=81.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHH-------HhcCCCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNA-------ALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +.++.+|||+|||+|.+++.++. .+..+++|+|+++.+++.|++++       ..+++...++.+..++....+..   
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~---  247 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR---  247 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHH---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccc---
Confidence            56789999999999999998875 56667999999999999998765       33455334566666655443110   


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                        .               ....+|+|++|.++  ......+.++++.|||||.|++++..
T Consensus       248 --d---------------~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          248 --E---------------RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             --H---------------HHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             --c---------------ccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence              0               01369999998765  34556778899999999999987554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.45  E-value=8.4e-13  Score=108.91  Aligned_cols=118  Identities=18%  Similarity=0.223  Sum_probs=89.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ..++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..+ +.  ..+.+...+....+.         
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~~~~---------  162 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAEL---------  162 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--CCEEEEESCGGGCCC---------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCEEEEECchhhcCC---------
Confidence            457889999999999999998875 4 578999999999999999998876 62  345555544322110         


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                   +.+.||+|+++++..  ..+++.+.++|||||.+++.+.......++.+.+++.
T Consensus       163 -------------~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  214 (258)
T 2pwy_A          163 -------------EEAAYDGVALDLMEP--WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAH  214 (258)
T ss_dssp             -------------CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTT
T ss_pred             -------------CCCCcCEEEECCcCH--HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence                         456899999976533  4678899999999999999776655556666666543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.45  E-value=3.9e-13  Score=109.49  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcc
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPAS  124 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~  124 (225)
                      ..+..++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++.       ..+.+...+. +.++. 
T Consensus        36 ~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~-  106 (226)
T 3m33_A           36 LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANA-------PHADVYEWNGKGELPA-  106 (226)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHC-------TTSEEEECCSCSSCCT-
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhC-------CCceEEEcchhhccCC-
Confidence            34444555556678999999999999999999885 57999999999999999871       2355666555 22211 


Q ss_pred             ccccccccccccccccccCCCC-CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          125 MNERVDGIVEDLSSHEIRGISE-TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                                           . +++||+|+++.   ....++.++.+.|||||.++.. ........+.+.+.+
T Consensus       107 ---------------------~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~l~~  156 (226)
T 3m33_A          107 ---------------------GLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFLYV-GPRLNVPEVPERLAA  156 (226)
T ss_dssp             ---------------------TCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEEEE-ESSSCCTHHHHHHHH
T ss_pred             ---------------------cCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEEEe-CCcCCHHHHHHHHHH
Confidence                                 3 67899999973   3456677899999999999832 222234455555554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.45  E-value=4.6e-13  Score=110.26  Aligned_cols=104  Identities=14%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+|||+|.++..+++.  +..+|+|+|+++.|++.+++++...+    ++.....+.....     . ..  
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~~~p~-----~-~~--  142 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDARFPE-----K-YR--  142 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCTTCGG-----G-GT--
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEeccCcc-----c-cc--
Confidence            678999999999999999999974  56889999999999999988865432    2334444332210     0 00  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                 .....+|+|+++.+... ...++.++.+.|||||.++++
T Consensus       143 -----------~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          143 -----------HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             -----------TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------cccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence                       04568999999877654 456789999999999999986

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.44  E-value=1.9e-13  Score=115.01  Aligned_cols=108  Identities=14%  Similarity=0.103  Sum_probs=81.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|..+..+++.  +..+++|+|+++.+++.+++++..+++.  .+.+...+...+.       ..+ 
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~-------~~~-  150 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL--NTIIINADMRKYK-------DYL-  150 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCHHHHH-------HHH-
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC--cEEEEeCChHhcc-------hhh-
Confidence            457889999999999999998873  4478999999999999999999988875  3555554432210       000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      .          ...+.||+|++++|...                     ...+++.+.++|||||.+++++
T Consensus       151 ~----------~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          151 L----------KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             H----------HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h----------hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            0          01467999999977522                     3678999999999999998863

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.44  E-value=6.5e-13  Score=108.86  Aligned_cols=102  Identities=22%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++          +.+...+...       ....+   
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~-------~~~~~---   97 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK----------FNVVKSDAIE-------YLKSL---   97 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT----------SEEECSCHHH-------HHHTS---
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh----------cceeeccHHH-------Hhhhc---
Confidence            34678999999999999999888755 599999999999999866          1232222111       00011   


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                ++++||+|+++..+++     +..++.++.++|||||.+++.......
T Consensus        98 ----------~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  145 (240)
T 3dli_A           98 ----------PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS  145 (240)
T ss_dssp             ----------CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred             ----------CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence                      4678999999887754     467899999999999999997665433

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.44  E-value=9.4e-13  Score=110.86  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.|+++....+.   ++.+...+...++            
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~------------   85 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIE------------   85 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS---EEEEEESCTTTCC------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcchhhcC------------
Confidence            46789999999999999998875 4 47899999999999999999876553   3566666654432            


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                 ..++||+|+++..+++   ...++.++.+.|||||.+++.+..
T Consensus        86 -----------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           86 -----------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             -----------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -----------cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence                       2458999999887765   478899999999999999986544

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.44  E-value=6.8e-13  Score=111.83  Aligned_cols=128  Identities=13%  Similarity=0.116  Sum_probs=82.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC----------------------------
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPK----------------------------  109 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~----------------------------  109 (225)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++.......+                            
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            5789999999999966555554556899999999999999886543210000                            


Q ss_pred             cceEEEecCCC-CCccccccccccccccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEE
Q 041459          110 KMKLHLVPDRT-FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       110 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~  181 (225)
                      .+.+...+... .+..                 ....+.++||+|+++..+++       +..++.++.++|||||.+++
T Consensus       151 ~~~~~~~D~~~~~~~~-----------------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~  213 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLG-----------------AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  213 (289)
T ss_dssp             EEEEECCCTTSSSTTC-----------------SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hceEEecccCCCCCcc-----------------ccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            01111222221 1000                 00013467999999988766       45689999999999999998


Q ss_pred             eccC---------------CCcHHHHHHHHHhh-hhh
Q 041459          182 SGIL---------------SEQLPHIINRYSEF-LED  202 (225)
Q Consensus       182 ~~~~---------------~~~~~~~~~~~~~~-~~~  202 (225)
                      ....               .-...++.+.+.+. |..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~  250 (289)
T 2g72_A          214 IGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV  250 (289)
T ss_dssp             EEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             EEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence            5321               12456677777654 543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.43  E-value=8.9e-13  Score=113.15  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=80.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|..+..+++.  +..+++|+|+++.+++.+++++..+++.+  +.+...+...++.          
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~--v~~~~~D~~~~~~----------  183 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN--VILFHSSSLHIGE----------  183 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS--EEEESSCGGGGGG----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe--EEEEECChhhccc----------
Confidence            457889999999999999998874  34789999999999999999999888753  5555444322210          


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                  ..+.||+|++++|..                         ....+++.+.++|||||.+++++
T Consensus       184 ------------~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          184 ------------LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             ------------GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                        245799999987631                         02478999999999999998853

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.43  E-value=1.9e-12  Score=105.24  Aligned_cols=104  Identities=19%  Similarity=0.225  Sum_probs=77.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.+++++..+    ..+.+...+.....     ...   
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~-----~~~---  138 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPE-----EYR---  138 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGG-----GGT---
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcc-----hhh---
Confidence            456889999999999999998864 3 478999999999999999887644    23556655543310     000   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHH-HHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~-~~l~~~~~~LkpgG~l~~~  182 (225)
                                 ...++||+|+++.+..... .++..+.++|||||.+++.
T Consensus       139 -----------~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          139 -----------ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             -----------TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------cccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence                       0235799999988754443 4499999999999999886

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.43  E-value=7e-13  Score=106.62  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. +++.+...+....       .      
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-------~------  121 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDPLGI-------A------  121 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-GGEEEEESCHHHH-------H------
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-ceEEEEEecHHHH-------h------
Confidence            6789999999999999998875 3 578999999999999999999877764 3455655443111       0      


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                            ..  ..+ ||+|+++.....+..+++.+.++|||||++++.+.
T Consensus       122 ------~~--~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          122 ------AG--QRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             ------TT--CCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             ------cc--CCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence                  00  235 99999988777788899999999999999998644

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.43  E-value=8.4e-13  Score=114.71  Aligned_cols=101  Identities=23%  Similarity=0.248  Sum_probs=81.3

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++ +++.|++++..+++. +++.+...+....+              
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~--------------  112 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVS--------------  112 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCC--------------
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC-CcEEEEEcchhhCC--------------
Confidence            46889999999999999999988888999999997 889999999888875 35667666554431              


Q ss_pred             ccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ..++||+|+++++.+     .+...+..+.++|||||.++++
T Consensus       113 ---------~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          113 ---------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             ---------CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ---------CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence                     236799999987653     2456777889999999999863

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.43  E-value=1e-12  Score=104.71  Aligned_cols=102  Identities=20%  Similarity=0.128  Sum_probs=80.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +.+..+|||+|||+|.+++.++.. +..+|+|+|+|+.|++.+++++..++... ++.+  .+...          ..  
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~-~v~~--~d~~~----------~~--  111 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI-KYRF--LNKES----------DV--  111 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSS-EEEE--ECCHH----------HH--
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc-cEEE--ecccc----------cC--
Confidence            556889999999999999998764 55699999999999999999999888762 2333  32211          11  


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHH---HHHHHHHhccCCeEEEEec
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQ---LADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~---~l~~~~~~LkpgG~l~~~~  183 (225)
                                 +.+.||+|+..-.++.+.+   .+..+.+.|+|||+++-..
T Consensus       112 -----------~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          112 -----------YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             -----------TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             -----------CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence                       5778999999988888743   4668999999999987643

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.43  E-value=1.4e-14  Score=118.84  Aligned_cols=100  Identities=21%  Similarity=0.122  Sum_probs=78.6

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++..+++. ..+.+...+...++               
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~---------------  140 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIA-DKIEFICGDFLLLA---------------  140 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHG---------------
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCC-cCeEEEECChHHhc---------------
Confidence            68999999999999999999886 78999999999999999999888764 24556555432221               


Q ss_pred             cccccCCCCCCceeEEEeccchhHHH---HHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~---~~l~~~~~~LkpgG~l~~~  182 (225)
                              ..++||+|++++++++..   ..+..+.++|+|||.+++.
T Consensus       141 --------~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          141 --------SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             --------GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             --------ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence                    356899999999886533   2455678899999986653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.43  E-value=2e-12  Score=107.38  Aligned_cols=107  Identities=16%  Similarity=0.102  Sum_probs=80.6

Q ss_pred             HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +..++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..    .+    +...+...++.    
T Consensus        44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~----~~----~~~~d~~~~~~----  110 (260)
T 2avn_A           44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV----KN----VVEAKAEDLPF----  110 (260)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC----SC----EEECCTTSCCS----
T ss_pred             HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcC----CC----EEECcHHHCCC----
Confidence            344455544578899999999999999988875 479999999999999988753    11    44444433321    


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                        +.++||+|++...+.+    ...++.++.+.|||||.+++....
T Consensus       111 ------------------~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          111 ------------------PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             ------------------CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ------------------CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                              4678999999765433    567899999999999999987553

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.43  E-value=3e-12  Score=105.27  Aligned_cols=99  Identities=20%  Similarity=0.270  Sum_probs=76.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+..   +.+...+...++              
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~~--------------  101 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLK---IEFLQGDVLEIA--------------  101 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCC---CEEEESCGGGCC--------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCCc---eEEEECChhhcc--------------
Confidence            357899999999999999988875 47999999999999999998776642   455554443221              


Q ss_pred             ccccccCCCCCCceeEEEeccc---h---hHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANIL---L---NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~---~---~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ..++||+|++...   +   .....++..+.+.|||||.+++.
T Consensus       102 ---------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          102 ---------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             ---------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                     2467999997532   1   23567899999999999999874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.42  E-value=1.3e-12  Score=109.39  Aligned_cols=118  Identities=17%  Similarity=0.191  Sum_probs=89.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhc-C-CCCCcceEEEecCCCCCccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALN-N-IGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      +.++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++..+ + +. ..+.+...+....+         
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-~~v~~~~~d~~~~~---------  166 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-DNWRLVVSDLADSE---------  166 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC-TTEEEECSCGGGCC---------
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC-CcEEEEECchHhcC---------
Confidence            457889999999999999998874  4678999999999999999998776 4 22 23555544432211         


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                                   .+.+.||+|+++.+.  ...++..+.++|+|||.+++.+...+...++...+++
T Consensus       167 -------------~~~~~~D~v~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~  218 (280)
T 1i9g_A          167 -------------LPDGSVDRAVLDMLA--PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA  218 (280)
T ss_dssp             -------------CCTTCEEEEEEESSC--GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             -------------CCCCceeEEEECCcC--HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence                         035679999997753  3467889999999999999987766666666666664

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.42  E-value=1.5e-12  Score=105.46  Aligned_cols=104  Identities=15%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+.+.+...  .  ++.....+.....        .+  
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~--~v~~~~~d~~~~~--------~~--  120 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--N--NIIPLLFDASKPW--------KY--  120 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--S--SEEEECSCTTCGG--------GT--
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--C--CeEEEEcCCCCch--------hh--
Confidence            457889999999999999988874 4568999999999887766555432  1  2344433332210        00  


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-HHHHHHHHHHhccCCeEEEEe
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ....++||+|+++...+. ...++.++.+.|||||.++++
T Consensus       121 ---------~~~~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          121 ---------SGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             ---------TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cccccceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence                     002368999999865443 334589999999999999986

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.42  E-value=1.1e-12  Score=110.06  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=89.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..+++. ..+.+...+....            
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------------  176 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISEG------------  176 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGGC------------
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHc------------
Confidence            446889999999999999998875 4 678999999999999999999877753 2344444332111            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                                 .+.+.||+|+++++..  ..+++.+.++|+|||.+++.+....+..++.+.+++.
T Consensus       177 -----------~~~~~~D~V~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~  229 (277)
T 1o54_A          177 -----------FDEKDVDALFLDVPDP--WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQEL  229 (277)
T ss_dssp             -----------CSCCSEEEEEECCSCG--GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred             -----------ccCCccCEEEECCcCH--HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence                       1456899999987643  4678889999999999999776555566666666543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.42  E-value=1e-12  Score=107.78  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=86.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++...+++. ..+.+...+.....             
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-------------  153 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG-KNVKFFNVDFKDAE-------------  153 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC-TTEEEECSCTTTSC-------------
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-CcEEEEEcChhhcc-------------
Confidence            346889999999999999998887 678999999999999999999877764 23455444332210             


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                               .....||+|+++++  ....+++.+.++|+|||.+++.....+...++.+.++
T Consensus       154 ---------~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~  204 (248)
T 2yvl_A          154 ---------VPEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIE  204 (248)
T ss_dssp             ---------CCTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHST
T ss_pred             ---------cCCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence                     02457999999876  2346688899999999999997665545555555544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.42  E-value=1.8e-12  Score=105.41  Aligned_cols=107  Identities=19%  Similarity=0.180  Sum_probs=79.9

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      .+..++.....++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++..       .+.+...+...++    
T Consensus        29 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-------~~~~~~~d~~~~~----   96 (239)
T 3bxo_A           29 DIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-------DATLHQGDMRDFR----   96 (239)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-------TCEEEECCTTTCC----
T ss_pred             HHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-------CCEEEECCHHHcc----
Confidence            34455555455788999999999999999887654 79999999999999987641       2455555544331    


Q ss_pred             ccccccccccccccccCCCCCCceeEEEecc-chh------HHHHHHHHHHHhccCCeEEEEecc
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~------~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                         ..++||+|+|.. .++      ....+++.+.+.|||||.+++...
T Consensus        97 -------------------~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           97 -------------------LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             -------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             -------------------cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence                               246799999633 333      346789999999999999999754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.42  E-value=2.3e-12  Score=109.06  Aligned_cols=115  Identities=13%  Similarity=0.119  Sum_probs=84.1

Q ss_pred             HHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCcceEEEecCCCCCcccc
Q 041459           48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-PKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        48 ~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  126 (225)
                      ...++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....++. ..++.+...+...++    
T Consensus        72 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~----  146 (299)
T 3g2m_A           72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA----  146 (299)
T ss_dssp             HHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC----
T ss_pred             HHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC----
Confidence            333444443445699999999999999998885 46999999999999999998765521 023566666654432    


Q ss_pred             ccccccccccccccccCCCCCCceeEEEec-cchh-----HHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIAN-ILLN-----PLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~-~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                         ..++||+|++. ..++     ....++.++.++|||||.+++.....
T Consensus       147 -------------------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          147 -------------------LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             -------------------CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             -------------------cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence                               35789988864 2222     24678999999999999999975543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.42  E-value=8.5e-13  Score=109.43  Aligned_cols=110  Identities=15%  Similarity=0.253  Sum_probs=83.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++. +++.+...+....       ...+...
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~-------l~~l~~~  150 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPV-------LDEMIKD  150 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHH-------HHHHHHS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHH-------HHHHHhc
Confidence            5789999999999999998874 3 578999999999999999999888764 4566665543211       0000000


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                             . ...++||+|+++.....+..+++.+.++|||||++++..
T Consensus       151 -------~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          151 -------E-KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             -------G-GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             -------c-CCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence                   0 014689999998877778899999999999999999854

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.42  E-value=9.8e-13  Score=107.98  Aligned_cols=120  Identities=13%  Similarity=0.125  Sum_probs=84.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++.+...+....       ......
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~-------~~~~~~  130 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-NKIFLKLGSALET-------LQVLID  130 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHH-------HHHHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHH-------HHHHHh
Confidence            36889999999999999998875 3 578999999999999999999877764 3455555433110       000000


Q ss_pred             ccccccccCCCCC--CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISET--EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~--~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ....-......+.  ++||+|+++.....+..+++.+.+.|+|||++++..+
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             hcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence            0000000000022  7899999998888888999999999999999999653

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.42  E-value=2.7e-14  Score=121.20  Aligned_cols=108  Identities=11%  Similarity=0.061  Sum_probs=76.6

Q ss_pred             HHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE-EEecCCCCCccc
Q 041459           49 LLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL-HLVPDRTFPASM  125 (225)
Q Consensus        49 ~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  125 (225)
                      ...|..+  ..++.+|||+|||||.++..+++.++.+|+|+|+++.|++.+.++..       ++.. ...+...+..  
T Consensus        74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~-------rv~~~~~~ni~~l~~--  144 (291)
T 3hp7_A           74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD-------RVRSMEQYNFRYAEP--  144 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT-------TEEEECSCCGGGCCG--
T ss_pred             HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------ccceecccCceecch--
Confidence            3444443  22578999999999999999999888899999999999998654311       1111 1011111100  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          126 NERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                          ..+             +...||+|+++..+..+..++..+.++|||||.+++.
T Consensus       145 ----~~l-------------~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          145 ----VDF-------------TEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             ----GGC-------------TTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             ----hhC-------------CCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence                000             3345999999998888888999999999999999885

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.41  E-value=4.6e-12  Score=104.29  Aligned_cols=104  Identities=18%  Similarity=0.139  Sum_probs=73.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+|||+|..+..+++.  +..+|+|+|+++.+++...+.+...  .  ++.....+......     .    
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~--nv~~i~~Da~~~~~-----~----  140 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--P--NIFPLLADARFPQS-----Y----  140 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--T--TEEEEECCTTCGGG-----T----
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--C--CeEEEEcccccchh-----h----
Confidence            568999999999999999998874  4678999999999876554443322  1  25555555433200     0    


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHH-HHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l-~~~~~~LkpgG~l~~~  182 (225)
                                ....++||+|+++.+......++ ..+.++|||||.++++
T Consensus       141 ----------~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          141 ----------KSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             ----------TTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----------hccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence                      00245899999998876555554 4556699999999986

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.41  E-value=2.1e-12  Score=111.80  Aligned_cols=143  Identities=14%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  ++...++.+...++..+       +... 
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-------l~~~-  190 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-------LKNA-  190 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-------HHTS-
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-------HHhc-
Confidence            35789999999999999999876 4678999999999999999988642  44323566665543211       0000 


Q ss_pred             cccccccccCCCCCCceeEEEeccch--h---H--HHHHHHHHHHhccCCeEEEEec-cCCCc---HHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL--N---P--LLQLADHIVSYAKPGAVVGISG-ILSEQ---LPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~--~---~--~~~~l~~~~~~LkpgG~l~~~~-~~~~~---~~~~~~~~~~~~~~  202 (225)
                                  ..++||+|+++.+.  .   .  ...+++.+.++|+|||++++.. .....   .....+.+++.|..
T Consensus       191 ------------~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  258 (334)
T 1xj5_A          191 ------------AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG  258 (334)
T ss_dssp             ------------CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred             ------------cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCcc
Confidence                        34689999997652  1   1  3678999999999999999952 22122   22334444444441


Q ss_pred             --------hcccccCCceEEEeeee
Q 041459          203 --------ILLSEMDDWTCVSGTKK  219 (225)
Q Consensus       203 --------~~~~~~~~w~~~~~~k~  219 (225)
                              +.....+.|.-+.+.|+
T Consensus       259 ~~~~~~~~vP~y~~g~~gf~~as~~  283 (334)
T 1xj5_A          259 SVNYAWTSVPTYPSGVIGFMLCSTE  283 (334)
T ss_dssp             CEEEEEEECTTSGGGEEEEEEEECS
T ss_pred             ccceEEEeCCcccCCceEEEEcccC
Confidence                    22223467876666665

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.41  E-value=4.4e-13  Score=109.73  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=77.2

Q ss_pred             HhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCC-HHHHHHH---HHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           53 QSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDID-PQAIKSA---HQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        53 ~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~-~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ....+++.+|||+|||+|.++..+++ .+..+++|+|+| +.+++.|   ++++...++.+  +.+...+...++.    
T Consensus        19 ~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~--v~~~~~d~~~l~~----   92 (225)
T 3p2e_A           19 EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN--VVFVIAAAESLPF----   92 (225)
T ss_dssp             HHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS--EEEECCBTTBCCG----
T ss_pred             HHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC--eEEEEcCHHHhhh----
Confidence            33345788999999999999999885 456789999999 7777666   77766666543  5565555544311    


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhHH--------HHHHHHHHHhccCCeEEEE
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL--------LQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~--------~~~l~~~~~~LkpgG~l~~  181 (225)
                         .              ..+.+|.+.++++....        ..++.++.++|||||.+++
T Consensus        93 ---~--------------~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           93 ---E--------------LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             ---G--------------GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             ---h--------------ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence               0              13568888888765432        3578999999999999988

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.41  E-value=1.7e-12  Score=110.88  Aligned_cols=142  Identities=14%  Similarity=0.127  Sum_probs=95.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..  +++...++.+...++..+           +
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-----------l  162 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-----------M  162 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----------H
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-----------H
Confidence            35789999999999999999886 567899999999999999998764  344334566665543211           0


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccC--C--CcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGIL--S--EQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~--~--~~~~~~~~~~~~~~~~  202 (225)
                      .        .  ..++||+|+++.+...       ...+++.+.++|+|||++++....  .  .....+.+.+++.|..
T Consensus       163 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          163 K--------Q--NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV  232 (304)
T ss_dssp             H--------T--CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred             h--------h--CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCC
Confidence            0        0  3568999999876531       246799999999999999986422  1  1234444555555543


Q ss_pred             hcc-------cccCCceEEEeeee
Q 041459          203 ILL-------SEMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~-------~~~~~w~~~~~~k~  219 (225)
                      ...       ...+.|.-+...|+
T Consensus       233 v~~~~~~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          233 VAYAYCTIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceeEEEEeccccCcceEEEEEeCC
Confidence            322       23466776666654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.40  E-value=3e-12  Score=120.97  Aligned_cols=130  Identities=16%  Similarity=0.196  Sum_probs=92.3

Q ss_pred             cccceecCCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHHhcCC-
Q 041459           32 NPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAALNNI-  106 (225)
Q Consensus        32 ~~~~~f~~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~~~~~-  106 (225)
                      .+.+..++...+......+.+...+  .++.+|||+|||+|.++..+++.+.  .+++|+|+++.+++.|++++..... 
T Consensus       693 ~p~me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA  772 (950)
T 3htx_A          693 EERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK  772 (950)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT
T ss_pred             hhHHhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch
Confidence            3345544445566555555444332  3788999999999999999998753  6899999999999999987653211 


Q ss_pred             ---CCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeE
Q 041459          107 ---GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAV  178 (225)
Q Consensus       107 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~  178 (225)
                         ....+.+...+...++.                      ..+.||+|+++..++++     ..++..+.+.|||| .
T Consensus       773 kr~gl~nVefiqGDa~dLp~----------------------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~  829 (950)
T 3htx_A          773 EACNVKSATLYDGSILEFDS----------------------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-L  829 (950)
T ss_dssp             TCSSCSEEEEEESCTTSCCT----------------------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-E
T ss_pred             hhcCCCceEEEECchHhCCc----------------------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-E
Confidence               11246666666655432                      45789999998887663     34789999999999 7


Q ss_pred             EEEecc
Q 041459          179 VGISGI  184 (225)
Q Consensus       179 l~~~~~  184 (225)
                      ++++..
T Consensus       830 LIISTP  835 (950)
T 3htx_A          830 LIVSTP  835 (950)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            777544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.40  E-value=1.2e-12  Score=106.47  Aligned_cols=99  Identities=22%  Similarity=0.209  Sum_probs=76.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++....+    .+.+...+....              
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~--------------  128 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLG--------------  128 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGC--------------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCcccc--------------
Confidence            4567899999999999999988876 789999999999999999887554    245554443221              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ....++||+|+++.++++..   +.+.+.|||||.+++...
T Consensus       129 --------~~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          129 --------YEEEKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             --------CGGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred             --------cccCCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEEc
Confidence                    00346799999988776543   468899999999998754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=9.7e-13  Score=109.38  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=75.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|+++.        ++.+...+...++.             
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~-------------   90 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLAL-------------   90 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT--------TEEEECCCTTSCCS-------------
T ss_pred             CCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc--------CCEEEECchhhCCC-------------
Confidence            56889999999999999999884 468999999999998776543        24555555544321             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +.++||+|+++..+++   ...+++++.+.|| ||.+++.++
T Consensus        91 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           91 ---------PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             ---------CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             ---------CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence                     4678999999988765   5778999999999 997777544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.40  E-value=3.4e-12  Score=106.27  Aligned_cols=110  Identities=21%  Similarity=0.265  Sum_probs=79.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHH------HHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQ------AIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~------~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ++++.+|||+|||+|.++..+++. +. .+++|+|+++.      +++.|++++...++. .++.+...+ +....    
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-~~v~~~~~d-~~~~~----  114 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-DRLTVHFNT-NLSDD----  114 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-GGEEEECSC-CTTTC----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-CceEEEECC-hhhhc----
Confidence            457889999999999999998875 33 78999999997      999999998876653 345555544 11100    


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                       ...+             +.++||+|+++.++++   ...+++.+.++++|||.+++.++.
T Consensus       115 -~~~~-------------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          115 -LGPI-------------ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             -CGGG-------------TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             -cCCC-------------CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence             0000             4578999999888765   344666677777779999997654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.40  E-value=2.9e-12  Score=102.48  Aligned_cols=96  Identities=22%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++..+++   .+.+...+...+               
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~---------------  109 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSEF---------------  109 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGGC---------------
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC---CEEEEECchHHc---------------
Confidence            36789999999999999999988777899999999999999999887775   245555443222               


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEec
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                ..+||+|++|+|++.     ...+++.+.+.+  |+ +++.+
T Consensus       110 ----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~~  148 (207)
T 1wy7_A          110 ----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DV-VYSIH  148 (207)
T ss_dssp             ----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SE-EEEEE
T ss_pred             ----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--Cc-EEEEE
Confidence                      247999999999754     246778888887  54 55545

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.40  E-value=2.6e-12  Score=116.26  Aligned_cols=100  Identities=23%  Similarity=0.240  Sum_probs=81.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.+++.+++.+..+++|+|+++ +++.|++++..+++. +++.+...+...++              
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~-~~v~~~~~d~~~~~--------------  220 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVS--------------  220 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT-TTEEEEESCTTTCC--------------
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC-CcEEEEECchhhCc--------------
Confidence            36789999999999999999988888999999998 999999999988875 45677766554331              


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~  181 (225)
                               ..++||+|+++++.++     ....+..+.++|||||.+++
T Consensus       221 ---------~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          221 ---------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             ---------CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             ---------cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence                     2357999999988543     34566778899999999985

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.40  E-value=1.7e-12  Score=113.61  Aligned_cols=154  Identities=11%  Similarity=0.070  Sum_probs=90.4

Q ss_pred             eeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        27 ~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      ..+.++|+..|.+...........++......+.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+++
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~  260 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI  260 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            56777787666654433333333333332224678999999999999998874 56899999999999999999999887


Q ss_pred             CCCcceEEEecCCCCCccccccccccccccccccccCCC-CCCceeEEEeccchhHHHHHHHHHHHhccCCeE-EEEecc
Q 041459          107 GPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGIS-ETEKYDVVIANILLNPLLQLADHIVSYAKPGAV-VGISGI  184 (225)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~-l~~~~~  184 (225)
                      .+  +.+...+...+       ...+.....-..+.... ....||+|+++||....   ...+.+.|+++|. ++++|.
T Consensus       261 ~~--v~~~~~d~~~~-------~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          261 DN--VQIIRMAAEEF-------TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             CS--EEEECCCSHHH-------HHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEESC
T ss_pred             Cc--eEEEECCHHHH-------HHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEECC
Confidence            53  55554443211       00000000000000000 01379999999987532   2334445556555 555665


Q ss_pred             CCCcHHHHH
Q 041459          185 LSEQLPHII  193 (225)
Q Consensus       185 ~~~~~~~~~  193 (225)
                      ......++.
T Consensus       329 p~t~ard~~  337 (369)
T 3bt7_A          329 PETLCKNLE  337 (369)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            443333433

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.40  E-value=1.9e-12  Score=106.54  Aligned_cols=111  Identities=12%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++. +++.+...+....       +..+.. 
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~-------l~~l~~-  140 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-HKINFIESDAMLA-------LDNLLQ-  140 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHH-------HHHHHH-
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH-------HHHHHh-
Confidence            5789999999999999998874 4 578999999999999999999888874 4566665543211       011100 


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                             .-...++||+|+++.....+..+++.+.++|+|||++++...
T Consensus       141 -------~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          141 -------GQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             -------STTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             -------ccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecC
Confidence                   000146899999998877888999999999999999998643

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.40  E-value=2.2e-12  Score=110.82  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...  ++...++.+...++..+           +
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-----------l  175 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-----------L  175 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-----------H
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-----------H
Confidence            35689999999999999998876 5688999999999999999987643  33223455555443211           0


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-----H-H-HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-----P-L-LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~-~-~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~  202 (225)
                      .        .  ..++||+|+++.+..     . + ..+++.+.+.|+|||++++.....    .....+.+.+++.|..
T Consensus       176 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~  245 (314)
T 2b2c_A          176 K--------N--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA  245 (314)
T ss_dssp             H--------H--CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSE
T ss_pred             H--------h--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence            0        0  356899999987432     1 2 678999999999999999964211    1233445555555543


Q ss_pred             hcc-------cccCCceEEEeeee
Q 041459          203 ILL-------SEMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~-------~~~~~w~~~~~~k~  219 (225)
                      ...       ...|.|.-+.+.|+
T Consensus       246 v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          246 VTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceEEEEEecCcCCCceEEEEEeCC
Confidence            322       22366776666665

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=1.6e-12  Score=104.51  Aligned_cols=102  Identities=14%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..++.+|||+|||+|.++..+++..  ..+++++|+++.+++.|+++....++.+  +.+...+....            
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~------------  140 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN--VIVIVGDGTLG------------  140 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT--EEEEESCGGGC------------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--eEEEECCcccC------------
Confidence            4568899999999999999988753  2689999999999999999988777653  55554443111            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ......||+|+++.++++..   +.+.+.|||||.+++...
T Consensus       141 ----------~~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          141 ----------YEPLAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             ----------CGGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEES
T ss_pred             ----------CCCCCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEEC
Confidence                      00246799999988776543   478899999999998754

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.39  E-value=1.8e-12  Score=105.29  Aligned_cols=111  Identities=17%  Similarity=0.239  Sum_probs=84.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++..+++. .++.+...+...       ....+..
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~-------~~~~~~~  139 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALE-------TLDELLA  139 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHH-------HHHHHHH
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CeEEEEEcCHHH-------HHHHHHh
Confidence            36789999999999999998874 3 578999999999999999999888764 345555543211       1001100


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              . ...++||+|+++.+...+..+++.+.++|+|||++++.+.
T Consensus       140 --------~-~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          140 --------A-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             --------T-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             --------c-CCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence                    0 0016899999998888888999999999999999999644

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.39  E-value=7.1e-12  Score=111.79  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=80.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHH-------HHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSA-------HQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +.++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|       ++++...++...++.+...+.......   
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~---  316 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR---  316 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH---
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc---
Confidence            457889999999999999998874 777899999999999999       888887774323455554432110000   


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEecc
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                       ...              ....||+|+++..+  ......+..+.+.|||||.+++.+.
T Consensus       317 -~~~--------------~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          317 -VAE--------------LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             -HHH--------------HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             -ccc--------------ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeec
Confidence             000              13579999997443  4466678999999999999999743

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.39  E-value=1.1e-12  Score=106.39  Aligned_cols=117  Identities=17%  Similarity=0.169  Sum_probs=82.4

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcC------CCeEEEEeCCHHHHHHHHHHHHhcCC---CCCcceEEEec
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG------AAMSVGVDIDPQAIKSAHQNAALNNI---GPKKMKLHLVP  117 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~------~~~v~~vDi~~~~l~~a~~~~~~~~~---~~~~~~~~~~~  117 (225)
                      .+++.+...++++.+|||+|||+|.++..+++..      ..+++++|+++.+++.|++++..+++   ....+.+...+
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            3444443345678999999999999999988753      35899999999999999999887762   01235555544


Q ss_pred             CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ......   .  ..             ....+||+|+++.+.+.   +++.+.+.|||||.+++...
T Consensus       149 ~~~~~~---~--~~-------------~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          149 IYQVNE---E--EK-------------KELGLFDAIHVGASASE---LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             GGGCCH---H--HH-------------HHHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEEEE
T ss_pred             hHhccc---c--cC-------------ccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEc
Confidence            322100   0  00             03467999999887764   35778899999999998644

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.38  E-value=1.1e-12  Score=101.21  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=84.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc-c
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG-I  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  132 (225)
                      .+++.+|||+|||+|.++..+++. + ..+++++|+++ +++.            ..+.+...+....+  ..+.+.. +
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~--~~~~~~~~~   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDEL--VMKALLERV   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHH--HHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccch--hhhhhhccC
Confidence            457889999999999999998875 4 47899999999 6532            22445544443221  0000000 1


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH--------------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP--------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                                   +.++||+|+++.+++.              ...++..+.++|+|||.++++.+.......+.+.+..
T Consensus        85 -------------~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  151 (180)
T 1ej0_A           85 -------------GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             -------------TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             -------------CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH
Confidence                         4568999999877532              1578999999999999999988877777777777776


Q ss_pred             hhhhhc
Q 041459          199 FLEDIL  204 (225)
Q Consensus       199 ~~~~~~  204 (225)
                      .+..+.
T Consensus       152 ~~~~~~  157 (180)
T 1ej0_A          152 LFTKVK  157 (180)
T ss_dssp             HEEEEE
T ss_pred             hhhhEE
Confidence            654433

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.38  E-value=6.4e-12  Score=100.23  Aligned_cols=124  Identities=13%  Similarity=0.193  Sum_probs=83.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++.+|||+|||+|.++..+++. ..+|+|+|+++..           ..  ..+.+...+......  ...+...+..
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~--~~v~~~~~D~~~~~~--~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI--AGVRFIRCDIFKETI--FDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC--TTCEEEECCTTSSSH--HHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC--CCeEEEEccccCHHH--HHHHHHHhhc
Confidence            567899999999999999999888 6789999999841           12  235555555443210  0000000000


Q ss_pred             cccccccCCCCCCceeEEEeccch--------hH------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhhh
Q 041459          136 LSSHEIRGISETEKYDVVIANILL--------NP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLE  201 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~--------~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  201 (225)
                      .         ..++||+|+++++.        ++      ...++..+.++|||||.+++..+.......+...++..|.
T Consensus        87 ~---------~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~  157 (191)
T 3dou_A           87 E---------GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFS  157 (191)
T ss_dssp             H---------TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEE
T ss_pred             c---------cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcC
Confidence            0         01489999998643        11      2356788899999999999988877777788888877665


Q ss_pred             hhc
Q 041459          202 DIL  204 (225)
Q Consensus       202 ~~~  204 (225)
                      .+.
T Consensus       158 ~v~  160 (191)
T 3dou_A          158 SYK  160 (191)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.38  E-value=2.4e-12  Score=105.40  Aligned_cols=103  Identities=18%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++....+++++|+++.+++.|++++...++.+  +.+...+.. .+             
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~-~~-------------  152 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN--VHVILGDGS-KG-------------  152 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGG-GC-------------
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEECCcc-cC-------------
Confidence            45688999999999999999887532789999999999999999998877653  555554431 10             


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                              +.....||+|+++.+++.+.   +.+.+.|||||.++++...
T Consensus       153 --------~~~~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          153 --------FPPKAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             --------CGGGCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEECS
T ss_pred             --------CCCCCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEEec
Confidence                    00234599999987765433   3678899999999997553

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.38  E-value=2.1e-12  Score=105.81  Aligned_cols=109  Identities=17%  Similarity=0.254  Sum_probs=84.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++. .++.+...+...       ....+.  
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~-------~l~~l~--  141 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPALA-------TLEQLT--  141 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHH-------HHHHHH--
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHH-------HHHHHH--
Confidence            6789999999999999998874 3 468999999999999999999887764 345565543211       001100  


Q ss_pred             cccccccCCCCC--CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISET--EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~--~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               ...  ++||+|+++.....+..+++.+.++|+|||++++....
T Consensus       142 ---------~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          142 ---------QGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             ---------TSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             ---------hcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence                     012  68999999988778889999999999999999996443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.38  E-value=1.7e-12  Score=111.26  Aligned_cols=103  Identities=18%  Similarity=0.205  Sum_probs=80.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.|++++..+++.+  +.+...+.....           
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~--v~~~~~d~~~~~-----------  139 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN--VIFVCGDGYYGV-----------  139 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGCC-----------
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC--eEEEECChhhcc-----------
Confidence            457899999999999999998875 3 3579999999999999999998888753  556555443210           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                 ...++||+|+++.++++..   +.+.+.|||||.+++++..
T Consensus       140 -----------~~~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          140 -----------PEFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             -----------GGGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEBCB
T ss_pred             -----------ccCCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEECC
Confidence                       0246799999998876544   5678899999999997543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=3.3e-12  Score=109.61  Aligned_cols=143  Identities=10%  Similarity=0.147  Sum_probs=97.4

Q ss_pred             CCchHHHHHHHHHh---hccCCC--cEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE
Q 041459           41 EHATTKLCLLLLQS---LIKGGE--LFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH  114 (225)
Q Consensus        41 ~~~~~~~~~~~L~~---~~~~~~--~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~  114 (225)
                      ...+.+.+...+..   ....++  +|||+|||+|.++..+++ .+..+++++|+++.+++.|++++....  ..++++.
T Consensus        67 e~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~  144 (317)
T 3gjy_A           67 EFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR--APRVKIR  144 (317)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEE
T ss_pred             hhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEE
Confidence            45566666665543   122334  999999999999999887 566689999999999999999875432  2356666


Q ss_pred             EecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-----H--HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459          115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----P--LLQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~--~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                      ..++..+       +...             ..++||+|+++....     +  ..++++.+.+.|+|||++++......
T Consensus       145 ~~Da~~~-------l~~~-------------~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~  204 (317)
T 3gjy_A          145 VDDARMV-------AESF-------------TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHS  204 (317)
T ss_dssp             ESCHHHH-------HHTC-------------CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred             ECcHHHH-------Hhhc-------------cCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            6554221       0000             357899999975322     1  26789999999999999998654222


Q ss_pred             c---HHHHHHHHHhhhhhhcc
Q 041459          188 Q---LPHIINRYSEFLEDILL  205 (225)
Q Consensus       188 ~---~~~~~~~~~~~~~~~~~  205 (225)
                      .   ...+...+++.|..+..
T Consensus       205 ~~~~~~~~~~tL~~vF~~v~~  225 (317)
T 3gjy_A          205 DLRGAKSELAGMMEVFEHVAV  225 (317)
T ss_dssp             TCHHHHHHHHHHHHHCSEEEE
T ss_pred             chHHHHHHHHHHHHHCCceEE
Confidence            2   34566666666654443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.37  E-value=9.7e-13  Score=108.78  Aligned_cols=83  Identities=22%  Similarity=0.239  Sum_probs=62.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++..+++. +++.+...+... +.       .     
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~-----  131 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLM-------D-----  131 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSST-------T-----
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC-ccEEEEEcchhhhhh-------h-----
Confidence            4679999999999999887764 4578999999999999999999988875 346666665432 10       0     


Q ss_pred             cccccccCCCC--CCceeEEEeccchh
Q 041459          136 LSSHEIRGISE--TEKYDVVIANILLN  160 (225)
Q Consensus       136 ~~~~~~~~~~~--~~~~DvIi~~~~~~  160 (225)
                             .+..  +.+||+|++|+|+.
T Consensus       132 -------~~~~~~~~~fD~i~~npp~~  151 (254)
T 2h00_A          132 -------ALKEESEIIYDFCMCNPPFF  151 (254)
T ss_dssp             -------TSTTCCSCCBSEEEECCCCC
T ss_pred             -------hhhcccCCcccEEEECCCCc
Confidence                   0001  25799999998865

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.37  E-value=8.3e-12  Score=99.43  Aligned_cols=92  Identities=28%  Similarity=0.425  Sum_probs=69.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++.       .+.+...+...+               
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~---------------  107 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEI---------------  107 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGC---------------
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHC---------------
Confidence            3678999999999999999988877789999999999999998865       244555443222               


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEec
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                .++||+|++|+|+++.     ..++..+.+.+   |.+++.+
T Consensus       108 ----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~  146 (200)
T 1ne2_A          108 ----------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIG  146 (200)
T ss_dssp             ----------CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEE
T ss_pred             ----------CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEE
Confidence                      2679999999998764     35677888887   4555544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.37  E-value=1.5e-12  Score=105.57  Aligned_cols=113  Identities=21%  Similarity=0.299  Sum_probs=81.5

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC---CCCcceEEEecCCCC
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNI---GPKKMKLHLVPDRTF  121 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~  121 (225)
                      .+++.+...++++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++..++.   ....+.+...+....
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            344444433567899999999999999998875 3 35899999999999999999887653   012355555443211


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      .                      .....||+|+++.+...   +++.+.+.|||||.++++..
T Consensus       146 ~----------------------~~~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          146 Y----------------------AEEAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             C----------------------GGGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEES
T ss_pred             c----------------------ccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEe
Confidence            0                      03467999999877653   34678899999999998643

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.36  E-value=2.7e-11  Score=103.84  Aligned_cols=104  Identities=20%  Similarity=0.217  Sum_probs=81.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .+++.|++++...++. +++.+...+....+             
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-------------  228 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA-SRYHTIAGSAFEVD-------------  228 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG-GGEEEEESCTTTSC-------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC-cceEEEecccccCC-------------
Confidence            56789999999999999988764 56789999999 9999999998877764 34666655543321             


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ....||+|++...+++     ...+++++.+.|+|||.+++.+..
T Consensus       229 ----------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          229 ----------YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             ----------CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ----------CCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence                      2334999999777654     357899999999999998886554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.36  E-value=5.2e-12  Score=105.07  Aligned_cols=115  Identities=19%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhc-cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc
Q 041459           46 KLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA  123 (225)
Q Consensus        46 ~~~~~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (225)
                      ..+...+.... .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++..       .+.+...+...++.
T Consensus        72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~  144 (269)
T 1p91_A           72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-------QVTFCVASSHRLPF  144 (269)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTSCSB
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-------CcEEEEcchhhCCC
Confidence            33444444333 46889999999999999998875 45689999999999999987641       24455555443321


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                                            ..++||+|+++....    .+.++.++|||||.+++.........++.
T Consensus       145 ----------------------~~~~fD~v~~~~~~~----~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  188 (269)
T 1p91_A          145 ----------------------SDTSMDAIIRIYAPC----KAEELARVVKPGGWVITATPGPRHLMELK  188 (269)
T ss_dssp             ----------------------CTTCEEEEEEESCCC----CHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred             ----------------------CCCceeEEEEeCChh----hHHHHHHhcCCCcEEEEEEcCHHHHHHHH
Confidence                                  456899999976543    46788999999999999877665554443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.35  E-value=2.6e-11  Score=104.89  Aligned_cols=103  Identities=17%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|+++....++. +++.+...+....+.        .     
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--------~-----  244 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG-GRVEFFEKNLLDARN--------F-----  244 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG-GGEEEEECCTTCGGG--------G-----
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC-CceEEEeCCcccCcc--------c-----
Confidence            78999999999999998776 46678999999 88999999998877764 346665554432210        0     


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ....||+|++...+++     ...+++++.+.|||||.+++.+.
T Consensus       245 --------~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          245 --------EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             --------TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --------CCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                    2346999999877764     36789999999999999998653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.35  E-value=9.4e-12  Score=109.06  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=80.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+| |+|.+++.+++.+. .+++++|+++.+++.|++++..+++.  ++.+...+... ++.            
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~l~~------------  236 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE--DIEIFTFDLRKPLPD------------  236 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC--CEEEECCCTTSCCCT------------
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEEChhhhhchh------------
Confidence            578999999 99999999887754 78999999999999999999988864  36666655543 210            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH--HHHHHHHHHHhccCCe-EEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSYAKPGA-VVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~~LkpgG-~l~~~~~  184 (225)
                               ...++||+|++|+|+..  ...++..+.+.||||| .+++++.
T Consensus       237 ---------~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          237 ---------YALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             ---------TTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             ---------hccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence                     01357999999998743  4678899999999999 4455544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.34  E-value=9.9e-12  Score=100.11  Aligned_cols=102  Identities=25%  Similarity=0.277  Sum_probs=77.3

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++..         .+...+......       .+    
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~---------~~~~~d~~~~~~-------~~----   89 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD---------HVVLGDIETMDM-------PY----   89 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS---------EEEESCTTTCCC-------CS----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC---------cEEEcchhhcCC-------CC----
Confidence            467899999999999999988875 789999999999999886531         233433322100       00    


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                               ++++||+|+++..+++   ...++..+.+.|+|||.++++......
T Consensus        90 ---------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  135 (230)
T 3cc8_A           90 ---------EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSH  135 (230)
T ss_dssp             ---------CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTS
T ss_pred             ---------CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcch
Confidence                     4578999999887755   467899999999999999997554333

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.34  E-value=4.9e-12  Score=105.91  Aligned_cols=134  Identities=10%  Similarity=-0.048  Sum_probs=90.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh--cCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++..  .++...++.+...++..+              
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~--------------  136 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD--------------  136 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC--------------
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH--------------
Confidence            46899999999999999888776 8999999999999999887643  122223456665544322              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC-C---cHHHHHHHHHhhhhhhcccc----
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS-E---QLPHIINRYSEFLEDILLSE----  207 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~----  207 (225)
                                . ++||+|+++..-.  ..+++.+.+.|||||++++..... .   ....+.+.++..|.......    
T Consensus       137 ----------~-~~fD~Ii~d~~dp--~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP  203 (262)
T 2cmg_A          137 ----------I-KKYDLIFCLQEPD--IHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLR  203 (262)
T ss_dssp             ----------C-CCEEEEEESSCCC--HHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTC
T ss_pred             ----------H-hhCCEEEECCCCh--HHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccC
Confidence                      2 6799999985432  247889999999999999852211 1   23334444444443332221    


Q ss_pred             -cCCceEEEeeee
Q 041459          208 -MDDWTCVSGTKK  219 (225)
Q Consensus       208 -~~~w~~~~~~k~  219 (225)
                       .|.|.-+.++|+
T Consensus       204 ~~g~~~~~~as~~  216 (262)
T 2cmg_A          204 ILSNKGYIYASFK  216 (262)
T ss_dssp             TTCCEEEEEEESS
T ss_pred             CCcccEEEEeeCC
Confidence             467776666664

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.34  E-value=3.5e-13  Score=110.90  Aligned_cols=100  Identities=12%  Similarity=0.145  Sum_probs=66.6

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||||.++..+++.+..+++|+|+++.|++.|+++....... ....+.......+                
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~-~~~~~~~~~~~~~----------------   99 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM-EQFNFRNAVLADF----------------   99 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE-CSCCGGGCCGGGC----------------
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc-ccceEEEeCHhHc----------------
Confidence            46799999999999999999888779999999999999987654321100 0000000000000                


Q ss_pred             cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              ....+|.+.++..+..+..++..+.++|||||.+++.
T Consensus       100 --------~~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          100 --------EQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             --------CSCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             --------CcCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence                    1112344444444444577899999999999999885

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.34  E-value=1.1e-11  Score=98.53  Aligned_cols=132  Identities=13%  Similarity=0.180  Sum_probs=79.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++.+|||+|||+|.++..+++. +  ..+++|+|+++..           ..  ..+.+...+.......... ...+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~--~~v~~~~~d~~~~~~~~~~-~~~~   85 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI--PNVYFIQGEIGKDNMNNIK-NINY   85 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC--TTCEEEECCTTTTSSCCC------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC--CCceEEEccccchhhhhhc-cccc
Confidence            457889999999999999998864 4  4789999999931           11  2244555444332100000 0000


Q ss_pred             cccccc----ccccCCCCCCceeEEEeccchhH--------H------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459          133 VEDLSS----HEIRGISETEKYDVVIANILLNP--------L------LQLADHIVSYAKPGAVVGISGILSEQLPHIIN  194 (225)
Q Consensus       133 ~~~~~~----~~~~~~~~~~~~DvIi~~~~~~~--------~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (225)
                      ++....    ..+....+..+||+|+++..++.        .      ..++..+.++|||||.+++..+......++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~  165 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKT  165 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHH
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHH
Confidence            000000    00000003568999999865321        1      23688899999999999997777667777777


Q ss_pred             HHHhhhh
Q 041459          195 RYSEFLE  201 (225)
Q Consensus       195 ~~~~~~~  201 (225)
                      .+...|.
T Consensus       166 ~l~~~f~  172 (201)
T 2plw_A          166 YLKGMFQ  172 (201)
T ss_dssp             HHHTTEE
T ss_pred             HHHHHHh
Confidence            7766543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.34  E-value=3.1e-11  Score=105.12  Aligned_cols=102  Identities=17%  Similarity=0.083  Sum_probs=80.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++.+...+....              
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--------------  244 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFKP--------------  244 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSC--------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCCc--------------
Confidence            35789999999999999998874 4668999999 99999999999877765 3466665543221              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ....||+|+++..+++     ...+++++.+.|||||.+++.+.
T Consensus       245 ----------~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          245 ----------LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             ----------CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ----------CCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                      1234999999887754     24789999999999999998766

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.34  E-value=3.7e-12  Score=102.74  Aligned_cols=102  Identities=16%  Similarity=0.232  Sum_probs=72.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHH----HhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNA----ALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      .+++.+|||+|||+|.++..+++. +..+++|+|+++.+++.+.+++    ...++.  ++.+...+...++.       
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~--~v~~~~~d~~~l~~-------   95 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP--NLLYLWATAERLPP-------   95 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT--TEEEEECCSTTCCS-------
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC--ceEEEecchhhCCC-------
Confidence            446889999999999999998875 4678999999999888643333    233332  46666666655432       


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchhH-----H---HHHHHHHHHhccCCeEEEEe
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLNP-----L---LQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~---~~~l~~~~~~LkpgG~l~~~  182 (225)
                                     ..+. |.+++..+...     .   ..++.++.++|||||.++++
T Consensus        96 ---------------~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           96 ---------------LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             ---------------CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             ---------------CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence                           2334 66665443322     2   67899999999999999985

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.33  E-value=6.2e-12  Score=108.91  Aligned_cols=116  Identities=20%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CC-----CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GA-----AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~-----~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      ++.+|||+|||+|.++..+++. +.     .+++|+|+++.+++.|+.++..+++.   +.+...+....          
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~---~~i~~~D~l~~----------  196 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK---MTLLHQDGLAN----------  196 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC---CEEEESCTTSC----------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC---ceEEECCCCCc----------
Confidence            4679999999999999987764 21     67999999999999999999887763   44544433211          


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHhccCCeEEEEec----cCC
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISG----ILS  186 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~----~~~  186 (225)
                                   ....+||+|++|+|+..                     ...++..+.+.|||||.+++..    +..
T Consensus       197 -------------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~  263 (344)
T 2f8l_A          197 -------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT  263 (344)
T ss_dssp             -------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred             -------------cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCC
Confidence                         03468999999999532                     1257899999999999988864    233


Q ss_pred             CcHHHHHHHHHhh
Q 041459          187 EQLPHIINRYSEF  199 (225)
Q Consensus       187 ~~~~~~~~~~~~~  199 (225)
                      .....+++.+.+.
T Consensus       264 ~~~~~ir~~l~~~  276 (344)
T 2f8l_A          264 SDFAKVDKFIKKN  276 (344)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhC
Confidence            4556666666553

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.33  E-value=5.6e-12  Score=101.38  Aligned_cols=101  Identities=26%  Similarity=0.381  Sum_probs=73.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++   ..     +.+...+...+       ...     
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~-----~~~~~~~~~~~-------~~~-----  109 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---GA-----GEVHLASYAQL-------AEA-----  109 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---CS-----SCEEECCHHHH-------HTT-----
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---cc-----cccchhhHHhh-------ccc-----
Confidence            3678999999999999999988854 799999999999999876   11     22333222111       000     


Q ss_pred             ccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                            ......+||+|+++..++  ....++..+.+.|||||.+++++.
T Consensus       110 ------~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          110 ------KVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             ------CSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ------ccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence                  001345699999987765  346789999999999999999754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.33  E-value=2.7e-12  Score=108.49  Aligned_cols=111  Identities=15%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             CCCcEEEEcccccHHHHHHH-----hcCCCe--EEEEeCCHHHHHHHHHHHHhc-CCCCCcceEEEecCCCCCccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAI-----KFGAAM--SVGVDIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~-----~~~~~~--v~~vDi~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      ++.+|||+|||+|.++..++     +.+...  ++|+|.|+.|++.|++++... ++.  .+.+.+......     +..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~--~v~~~~~~~~~~-----~~~  124 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAWHKETSS-----EYQ  124 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT--TEEEEEECSCHH-----HHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC--cceEEEEecchh-----hhh
Confidence            46799999999998765322     223443  499999999999999887643 333  244443333211     000


Q ss_pred             cccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ..+.         +-.++++||+|+++..+++   +...+.++.++|||||.+++...
T Consensus       125 ~~~~---------~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          125 SRML---------EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             HHHH---------TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhc---------cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            0000         0003678999999988876   56789999999999999998644

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.33  E-value=3.3e-11  Score=104.67  Aligned_cols=102  Identities=21%  Similarity=0.219  Sum_probs=80.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++.+...+....              
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--------------  252 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKE--------------  252 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT-TTEEEEECCTTTS--------------
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC-CCEEEEeCccccC--------------
Confidence            46789999999999999988764 5678999999 99999999999877765 3466666554332              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                +...+|+|++...+++     ...+++++.+.|||||.+++.+.
T Consensus       253 ----------~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          253 ----------SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             ----------CCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             ----------CCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence                      1223499999877754     46789999999999999988653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.33  E-value=1.3e-11  Score=110.88  Aligned_cols=121  Identities=18%  Similarity=0.119  Sum_probs=87.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|..+..+++. +. .+++++|+++.+++.+++++...++.+  +.+...+...++.       .+ 
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~--v~~~~~D~~~~~~-------~~-  326 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI--VKPLVKDARKAPE-------II-  326 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS--EEEECSCTTCCSS-------SS-
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc--EEEEEcChhhcch-------hh-
Confidence            457889999999999999998874 33 789999999999999999999888753  5555555443310       00 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEeccC--C
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGIL--S  186 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~  186 (225)
                                  ..+.||+|++++|...                         ...++..+.++|||||.+++++..  .
T Consensus       327 ------------~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~  394 (450)
T 2yxl_A          327 ------------GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK  394 (450)
T ss_dssp             ------------CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             ------------ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence                        2367999999776411                         156799999999999999886432  2


Q ss_pred             C-cHHHHHHHHHh
Q 041459          187 E-QLPHIINRYSE  198 (225)
Q Consensus       187 ~-~~~~~~~~~~~  198 (225)
                      . +...+...+..
T Consensus       395 ~ene~~v~~~l~~  407 (450)
T 2yxl_A          395 EENEKNIRWFLNV  407 (450)
T ss_dssp             GGTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHh
Confidence            2 33344444544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.33  E-value=5.6e-11  Score=103.84  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+....              
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~--------------  264 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA-DRCEILPGDFFET--------------  264 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTTC--------------
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC-CceEEeccCCCCC--------------
Confidence            3568999999999999998876 46678999999 99999999998877765 4566665544311              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ....||+|++...+++     ...+++++.+.|||||.+++.+..
T Consensus       265 ----------~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          265 ----------IPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             ----------CCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             ----------CCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                      1227999999877754     236899999999999999986553

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.33  E-value=4.9e-11  Score=102.45  Aligned_cols=102  Identities=15%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+....               
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~---------------  231 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQVVVGSFFDP---------------  231 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTSC---------------
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeEEecCCCCCC---------------
Confidence            457999999999999998776 56678999999 99999999998877765 3566665544211               


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               .+..||+|++...+++     ...+++++++.|||||.+++.+..
T Consensus       232 ---------~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          232 ---------LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             ---------CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             ---------CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence                     1227999999877754     367899999999999999987654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.32  E-value=1.9e-11  Score=110.51  Aligned_cols=103  Identities=16%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++.+|||+|||+|..+..+++.  +..+++|+|+++.+++.+++|+..+++.+  +.+...+...++        ..   
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n--v~~~~~D~~~~~--------~~---  183 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN--VALTHFDGRVFG--------AA---  183 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS--EEEECCCSTTHH--------HH---
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--EEEEeCCHHHhh--------hh---
Confidence            7899999999999999998874  34789999999999999999999888753  555555543321        00   


Q ss_pred             cccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                ..+.||+|++++|..                         ....++..+.++|||||++++++
T Consensus       184 ----------~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          184 ----------VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             ----------STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----------ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence                      246799999987641                         02467899999999999998863

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.32  E-value=4.8e-11  Score=104.02  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=80.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+......       .    
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-------~----  244 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS-ERIHGHGANLLDRDV-------P----  244 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG-GGEEEEECCCCSSSC-------C----
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc-cceEEEEccccccCC-------C----
Confidence            3578999999999999998876 46678999999 99999999998776654 346666554432100       0    


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                -++.||+|++...+++     ...+++++.+.|||||.+++.+.
T Consensus       245 ----------~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          245 ----------FPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             ----------CCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ----------CCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence                      1267999999777653     35689999999999999988654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.32  E-value=3.1e-12  Score=114.86  Aligned_cols=104  Identities=14%  Similarity=0.081  Sum_probs=80.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++|+..+++.+  +.+...+...+        ... 
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n--v~v~~~Da~~l--------~~~-  171 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN--AIVTNHAPAEL--------VPH-  171 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS--EEEECCCHHHH--------HHH-
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEeCCHHHh--------hhh-
Confidence            457899999999999999998864  45789999999999999999999998764  44444333211        000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                  ..+.||+|++++|..                         ....++..+.++|||||+++++
T Consensus       172 ------------~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  233 (456)
T 3m4x_A          172 ------------FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYS  233 (456)
T ss_dssp             ------------HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ------------ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                        246899999998731                         1236799999999999998875

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.31  E-value=4.4e-12  Score=111.50  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=79.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc---------------CCCCCcceEEEecCCCC
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN---------------NIGPKKMKLHLVPDRTF  121 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~---------------~~~~~~~~~~~~~~~~~  121 (225)
                      ++.+|||+|||+|.+++.+++. +..+++++|+++.+++.+++|+..+               ++.+  +.+...|...+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~--i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT--IVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE--EEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc--eEEEcCcHHHH
Confidence            6899999999999999998875 6678999999999999999999988               6542  44544433211


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                             ..            .  ....||+|+++++. ....+++.+.+.||+||.+++++.
T Consensus       125 -------~~------------~--~~~~fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt~t  165 (378)
T 2dul_A          125 -------MA------------E--RHRYFHFIDLDPFG-SPMEFLDTALRSAKRRGILGVTAT  165 (378)
T ss_dssp             -------HH------------H--STTCEEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -------HH------------h--ccCCCCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEEee
Confidence                   00            0  13579999988753 346778889999999999998763

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.31  E-value=3.6e-12  Score=114.70  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.+++|+..+++.   +.+...+...+        ... 
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~---v~~~~~Da~~l--------~~~-  166 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP---LAVTQAPPRAL--------AEA-  166 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC---CEEECSCHHHH--------HHH-
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe---EEEEECCHHHh--------hhh-
Confidence            457899999999999999998864  3468999999999999999999988864   44544433211        000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-------------------------HHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                  ..+.||+|++++|..                         ....++..+.++|||||+++++
T Consensus       167 ------------~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys  228 (464)
T 3m6w_A          167 ------------FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS  228 (464)
T ss_dssp             ------------HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ------------ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                        246899999987741                         1267899999999999999885

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.31  E-value=1.5e-11  Score=103.93  Aligned_cols=142  Identities=16%  Similarity=0.145  Sum_probs=94.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+  +...++.+...++..+           +
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----------l  145 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----------L  145 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----------H
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-----------H
Confidence            35789999999999999998876 46789999999999999999875432  2223456655443211           0


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-----HH--HHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-----PL--LQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~--~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~  202 (225)
                      .        .  ..++||+|+++.+..     .+  ..+++.+.+.|+|||++++.....    .....+.+.+++.|..
T Consensus       146 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  215 (283)
T 2i7c_A          146 E--------N--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  215 (283)
T ss_dssp             H--------H--CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             H--------h--CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence            0        0  256799999976421     12  678999999999999999864321    2234445555554543


Q ss_pred             hcc-------cccCCceEEEeeee
Q 041459          203 ILL-------SEMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~-------~~~~~w~~~~~~k~  219 (225)
                      +..       ...|.|.-+.+.|+
T Consensus       216 v~~~~~~vP~y~~g~~g~~~~s~~  239 (283)
T 2i7c_A          216 VEYANISIPTYPCGCIGILCCSKT  239 (283)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             eEEEEEEcCCcCCCcEEEEEEeCC
Confidence            322       23456666666554

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.31  E-value=1.9e-11  Score=98.77  Aligned_cols=99  Identities=12%  Similarity=0.141  Sum_probs=75.3

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      ..+.... ++.+|||+|||+|.++..+++.     +++|+++.+++.|+++    +     +.+...+...++.      
T Consensus        40 ~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----~-----~~~~~~d~~~~~~------   98 (219)
T 1vlm_A           40 QAVKCLL-PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----G-----VFVLKGTAENLPL------   98 (219)
T ss_dssp             HHHHHHC-CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----T-----CEEEECBTTBCCS------
T ss_pred             HHHHHhC-CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----C-----CEEEEcccccCCC------
Confidence            3444433 4889999999999999887655     9999999999999876    2     3455544433311      


Q ss_pred             cccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                      +.+.||+|+++..+++   ...++..+.+.|+|||.++++...
T Consensus        99 ----------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           99 ----------------KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             ----------------CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----------------CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence                            4568999999887764   567899999999999999997543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.31  E-value=1.6e-11  Score=109.46  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=87.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .+++.+|||+|||+|..+..+++.. ..+++|+|+++.+++.+++++..+++.   +.+...+...++       ..+  
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~---~~~~~~D~~~~~-------~~~--  311 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK---ATVKQGDGRYPS-------QWC--  311 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC---CEEEECCTTCTH-------HHH--
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC---eEEEeCchhhch-------hhc--
Confidence            4578899999999999999988753 478999999999999999999888864   455555544331       001  


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEecc-C-C-
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGI-L-S-  186 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~-~-~-  186 (225)
                                 +.+.||+|++++|...                         ...++..+.++|||||.+++++. . . 
T Consensus       312 -----------~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~  380 (429)
T 1sqg_A          312 -----------GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  380 (429)
T ss_dssp             -----------TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             -----------ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence                       3468999999876421                         14779999999999999988643 2 2 


Q ss_pred             CcHHHHHHHHHh
Q 041459          187 EQLPHIINRYSE  198 (225)
Q Consensus       187 ~~~~~~~~~~~~  198 (225)
                      ++...+...+..
T Consensus       381 ene~~v~~~l~~  392 (429)
T 1sqg_A          381 ENSLQIKAFLQR  392 (429)
T ss_dssp             GTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHh
Confidence            333444455554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.31  E-value=9.4e-12  Score=111.51  Aligned_cols=121  Identities=21%  Similarity=0.234  Sum_probs=87.0

Q ss_pred             CCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc--------------CCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           40 GEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--------------GAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        40 ~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~--------------~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      |.+.+.+.+.+.+...  ..++.+|+|.|||+|.+++.+++.              ...+++|+|+++.+++.|+.|+..
T Consensus       151 G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l  230 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  230 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence            4444555555555444  335779999999999999887653              235699999999999999999988


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH--------------------H
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL--------------------L  163 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~--------------------~  163 (225)
                      +++......+...+....+                       ...+||+|++|||+...                    .
T Consensus       231 ~g~~~~~~~i~~gD~l~~~-----------------------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~  287 (445)
T 2okc_A          231 HGIGTDRSPIVCEDSLEKE-----------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQL  287 (445)
T ss_dssp             TTCCSSCCSEEECCTTTSC-----------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHH
T ss_pred             hCCCcCCCCEeeCCCCCCc-----------------------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHH
Confidence            8874213445554432221                       23489999999997531                    3


Q ss_pred             HHHHHHHHhccCCeEEEEec
Q 041459          164 QLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       164 ~~l~~~~~~LkpgG~l~~~~  183 (225)
                      .++.++.+.|||||.+++..
T Consensus       288 ~fl~~~~~~Lk~gG~~a~V~  307 (445)
T 2okc_A          288 NFLQHMMLMLKTGGRAAVVL  307 (445)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhccCCEEEEEE
Confidence            67899999999999987753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.31  E-value=2.5e-12  Score=104.62  Aligned_cols=112  Identities=17%  Similarity=0.267  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-CC------CeEEEEeCCHHHHHHHHHHHHhcC-----CCCCcceE
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GA------AMSVGVDIDPQAIKSAHQNAALNN-----IGPKKMKL  113 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~~------~~v~~vDi~~~~l~~a~~~~~~~~-----~~~~~~~~  113 (225)
                      ..+.+.+...++++.+|||+|||+|.++..+++. +.      .+++++|+++.+++.|++++...+     ..  .+.+
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~--~v~~  149 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG--QLLI  149 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT--SEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC--ceEE
Confidence            3444444334567889999999999999988873 42      589999999999999999987654     22  3555


Q ss_pred             EEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ...+....                      +.....||+|+++.+.++.   .+.+.+.|||||.+++...
T Consensus       150 ~~~d~~~~----------------------~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          150 VEGDGRKG----------------------YPPNAPYNAIHVGAAAPDT---PTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             EESCGGGC----------------------CGGGCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEEES
T ss_pred             EECCcccC----------------------CCcCCCccEEEECCchHHH---HHHHHHHhcCCCEEEEEEe
Confidence            55443221                      0023679999998776543   3678899999999999654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.31  E-value=5e-12  Score=104.07  Aligned_cols=102  Identities=10%  Similarity=0.059  Sum_probs=74.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-----GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++.+|||+|||+|..+..+++.     +..+|+|+|+++.+++.|+ .     .. .++.+...+.....     .+...
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~-----~~-~~v~~~~gD~~~~~-----~l~~~  148 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-S-----DM-ENITLHQGDCSDLT-----TFEHL  148 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-G-----GC-TTEEEEECCSSCSG-----GGGGG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-c-----cC-CceEEEECcchhHH-----HHHhh
Confidence            5789999999999999998875     4678999999999998876 1     11 34666666654320     00000


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHH-hccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS-YAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~  184 (225)
                                   ...+||+|+++.....+..++..+.+ .|||||++++.++
T Consensus       149 -------------~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          149 -------------REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             -------------SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             -------------ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence                         23369999987664456778899997 9999999999654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.31  E-value=2.2e-11  Score=97.80  Aligned_cols=123  Identities=14%  Similarity=0.199  Sum_probs=88.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..++    .+++|+|+++.            .     +.+...+....+.             
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------~-----~~~~~~d~~~~~~-------------  111 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------D-----PRVTVCDMAQVPL-------------  111 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------S-----TTEEESCTTSCSC-------------
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------C-----ceEEEeccccCCC-------------
Confidence            457899999999999988763    57999999996            1     2344444433321             


Q ss_pred             ccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhh-hhhhccc-ccCC
Q 041459          137 SSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LEDILLS-EMDD  210 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~  210 (225)
                               +.+.||+|+++..++  ....++..+.++|+|||.+++.+...  ....++.+.+.+. |..+... ..+.
T Consensus       112 ---------~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  182 (215)
T 2zfu_A          112 ---------EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSH  182 (215)
T ss_dssp             ---------CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTT
T ss_pred             ---------CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCe
Confidence                     467899999987764  35678999999999999999976543  3566777777765 6655543 3356


Q ss_pred             ceEEEeeeeccc
Q 041459          211 WTCVSGTKKRAK  222 (225)
Q Consensus       211 w~~~~~~k~~~~  222 (225)
                      |..+.++|.+..
T Consensus       183 ~~~~~~~k~~~~  194 (215)
T 2zfu_A          183 FFLFDFQKTGPP  194 (215)
T ss_dssp             CEEEEEEECSSC
T ss_pred             EEEEEEEecCcc
Confidence            788888887543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.31  E-value=5.4e-11  Score=103.14  Aligned_cols=103  Identities=14%  Similarity=0.118  Sum_probs=80.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++.+...+....              
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--------------  245 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFEP--------------  245 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTSC--------------
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCCC--------------
Confidence            35789999999999999988764 4568999999 99999999999877765 3466665543221              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ....||+|+++..+++     ...+++++.+.|||||.+++.+..
T Consensus       246 ----------~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          246 ----------LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             ----------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----------CCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence                      1234999999877754     246899999999999999987654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.30  E-value=3.5e-12  Score=112.52  Aligned_cols=105  Identities=20%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc-ceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKK-MKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++|.+|||++||+|.+++.+++.  ++.+|+++|+++.+++.+++|+..|++.+ + +.+...|...+       +    
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~-~~v~v~~~Da~~~-------l----  118 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPE-DRYEIHGMEANFF-------L----  118 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCG-GGEEEECSCHHHH-------H----
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-ceEEEEeCCHHHH-------H----
Confidence            35789999999999999998873  56789999999999999999999999863 3 55554433111       0    


Q ss_pred             ccccccccc-CCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIR-GISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~-~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              . .  ....||+|+++| +.....++..+.+.|++||++++++.
T Consensus       119 --------~~~--~~~~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          119 --------RKE--WGFGFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             --------HSC--CSSCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --------HHh--hCCCCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEec
Confidence                    0 1  135799999998 44345688889999999999999874

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.29  E-value=1.5e-11  Score=104.01  Aligned_cols=99  Identities=16%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++....+.. ..+.+...+....              
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~D~~~~--------------   89 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKT--------------   89 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTS--------------
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcceecc--------------
Confidence            3467899999999999999998875 47999999999999999987655542 3466666655443              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHH--------------------HHhccCCeEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHI--------------------VSYAKPGAVVG  180 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~--------------------~~~LkpgG~l~  180 (225)
                                +...||+|++|+|++....++..+                    ...++|||.++
T Consensus        90 ----------~~~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           90 ----------DLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             ----------CCCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             ----------cchhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence                      234799999999987754443332                    24789998764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.28  E-value=7.8e-11  Score=98.01  Aligned_cols=134  Identities=16%  Similarity=0.130  Sum_probs=94.6

Q ss_pred             CCchHHHHHHHHHhh-------ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce
Q 041459           41 EHATTKLCLLLLQSL-------IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK  112 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~-------~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~  112 (225)
                      .|.+++..+..|..+       +.+..+|||+|||+|-+++.++.. +..+|+++|+++.+++.++.|+..+++.   ..
T Consensus       108 ~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~---~~  184 (281)
T 3lcv_B          108 VHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP---HR  184 (281)
T ss_dssp             TSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC---EE
T ss_pred             cCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---ce
Confidence            455566555444332       345789999999999999987765 7889999999999999999999988865   34


Q ss_pred             EEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHH-----HHHHHHHhccCCeEEEEecc--C
Q 041459          113 LHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQ-----LADHIVSYAKPGAVVGISGI--L  185 (225)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-----~l~~~~~~LkpgG~l~~~~~--~  185 (225)
                      +...+...-                       .+...||+++++-.++++.+     .+ .+.+.|+++|+++-...  .
T Consensus       185 ~~v~D~~~~-----------------------~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl  240 (281)
T 3lcv_B          185 TNVADLLED-----------------------RLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSL  240 (281)
T ss_dssp             EEECCTTTS-----------------------CCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC--
T ss_pred             EEEeeeccc-----------------------CCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhh
Confidence            444443221                       15778999999988887642     34 89999999999876544  3


Q ss_pred             CCcHHHHHHHHHhhhh
Q 041459          186 SEQLPHIINRYSEFLE  201 (225)
Q Consensus       186 ~~~~~~~~~~~~~~~~  201 (225)
                      .....-+.+.|+..++
T Consensus       241 ~Grs~gm~~~Y~~~~e  256 (281)
T 3lcv_B          241 GQRSKGMFQNYSQSFE  256 (281)
T ss_dssp             -----CHHHHHHHHHH
T ss_pred             cCCCcchhhHHHHHHH
Confidence            3344445556665543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.26  E-value=4.5e-11  Score=94.43  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=78.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CC---------CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE-EecCCCCCcc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GA---------AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH-LVPDRTFPAS  124 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~---------~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~  124 (225)
                      ++++.+|||+|||+|.++..+++. +.         .+++|+|+++..           ...  .+.+. ..+....  +
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~--~~~~~~~~d~~~~--~   84 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLE--GATFLCPADVTDP--R   84 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCT--TCEEECSCCTTSH--H
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCC--CCeEEEeccCCCH--H
Confidence            567899999999999999998875 54         789999999831           111  23333 2222111  0


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEeccchh--------HH------HHHHHHHHHhccCCeEEEEeccCCCcHH
Q 041459          125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------PL------LQLADHIVSYAKPGAVVGISGILSEQLP  190 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~  190 (225)
                      ........            .+.++||+|+++..++        ..      ..++..+.++|||||.+++..+......
T Consensus        85 ~~~~~~~~------------~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~  152 (196)
T 2nyu_A           85 TSQRILEV------------LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSR  152 (196)
T ss_dssp             HHHHHHHH------------SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGH
T ss_pred             HHHHHHHh------------cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHH
Confidence            00000000            0345799999976322        11      4678899999999999999877766667


Q ss_pred             HHHHHHHhhhhh
Q 041459          191 HIINRYSEFLED  202 (225)
Q Consensus       191 ~~~~~~~~~~~~  202 (225)
                      .+...++..|..
T Consensus       153 ~~~~~l~~~f~~  164 (196)
T 2nyu_A          153 RLQRRLTEEFQN  164 (196)
T ss_dssp             HHHHHHHHHEEE
T ss_pred             HHHHHHHHHhcc
Confidence            777777665543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.26  E-value=6.8e-11  Score=104.43  Aligned_cols=103  Identities=27%  Similarity=0.293  Sum_probs=75.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCC---------------------------------------CeEEEEeCCHHHHHH
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGVDIDPQAIKS   96 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~---------------------------------------~~v~~vDi~~~~l~~   96 (225)
                      ..++..|+|.+||+|++++.++..+.                                       .+++|+|+++.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            34678999999999999998775322                                       359999999999999


Q ss_pred             HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHH
Q 041459           97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHI  169 (225)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~  169 (225)
                      |+.|+..+++. +.+.+...+...++                       ....||+|++|||+.       ....+...+
T Consensus       279 Ar~Na~~~gl~-~~I~~~~~D~~~~~-----------------------~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~l  334 (393)
T 3k0b_A          279 AKQNAVEAGLG-DLITFRQLQVADFQ-----------------------TEDEYGVVVANPPYGERLEDEEAVRQLYREM  334 (393)
T ss_dssp             HHHHHHHTTCT-TCSEEEECCGGGCC-----------------------CCCCSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CceEEEECChHhCC-----------------------CCCCCCEEEECCCCccccCCchhHHHHHHHH
Confidence            99999999886 35666665543331                       345899999999973       233444555


Q ss_pred             HHhccC--CeEEEEe
Q 041459          170 VSYAKP--GAVVGIS  182 (225)
Q Consensus       170 ~~~Lkp--gG~l~~~  182 (225)
                      .+.||+  ||.+++.
T Consensus       335 g~~lk~~~g~~~~ii  349 (393)
T 3k0b_A          335 GIVYKRMPTWSVYVL  349 (393)
T ss_dssp             HHHHHTCTTCEEEEE
T ss_pred             HHHHhcCCCCEEEEE
Confidence            555555  7777664

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.25  E-value=2.7e-12  Score=108.25  Aligned_cols=117  Identities=14%  Similarity=0.085  Sum_probs=73.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCcceEE--EecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-NNIGPKKMKLH--LVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..++++... .... ..+.+.  ..+...+           
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l-----------  144 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKM-----------  144 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGC-----------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhC-----------
Confidence            457889999999999999999887  6799999998 54332211000 0000 123443  2222221           


Q ss_pred             ccccccccccCCCCCCceeEEEeccc-------hhHHH--HHHHHHHHhccCCe--EEEEeccCCCcHH---HHHHHHHh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANIL-------LNPLL--QLADHIVSYAKPGA--VVGISGILSEQLP---HIINRYSE  198 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~-------~~~~~--~~l~~~~~~LkpgG--~l~~~~~~~~~~~---~~~~~~~~  198 (225)
                                   ++++||+|+|+..       .++..  .++..+.++|||||  .+++..+. ....   ++...+..
T Consensus       145 -------------~~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~-~~~~~~~~~l~~l~~  210 (276)
T 2wa2_A          145 -------------EPFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN-PYSCDVLEALMKMQA  210 (276)
T ss_dssp             -------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC-CCSHHHHHHHHHHHH
T ss_pred             -------------CCCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC-CCchhHHHHHHHHHH
Confidence                         4578999999865       11121  36888999999999  88886665 3334   34444444


Q ss_pred             hhh
Q 041459          199 FLE  201 (225)
Q Consensus       199 ~~~  201 (225)
                      .|.
T Consensus       211 ~f~  213 (276)
T 2wa2_A          211 RFG  213 (276)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.25  E-value=3.3e-12  Score=107.17  Aligned_cols=116  Identities=11%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCcceEE--EecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL-NNIGPKKMKLH--LVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..++++... .... ..+.+.  ..+...+           
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l-----------  136 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTL-----------  136 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTS-----------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHC-----------
Confidence            557889999999999999998887  6799999998 53222211000 0000 124444  3333322           


Q ss_pred             ccccccccccCCCCCCceeEEEeccc-------hhHHH--HHHHHHHHhccCCe--EEEEeccCCCcHH---HHHHHHHh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANIL-------LNPLL--QLADHIVSYAKPGA--VVGISGILSEQLP---HIINRYSE  198 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~-------~~~~~--~~l~~~~~~LkpgG--~l~~~~~~~~~~~---~~~~~~~~  198 (225)
                                   ++++||+|+|+..       .++..  .++..+.++|||||  .+++..+. ....   ++...+..
T Consensus       137 -------------~~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~-~~~~~~~~~l~~l~~  202 (265)
T 2oxt_A          137 -------------PVERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC-PYSVEVMERLSVMQR  202 (265)
T ss_dssp             -------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC-TTSHHHHHHHHHHHH
T ss_pred             -------------CCCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC-CCChhHHHHHHHHHH
Confidence                         4578999999765       11121  36788999999999  99887665 3444   44444444


Q ss_pred             hh
Q 041459          199 FL  200 (225)
Q Consensus       199 ~~  200 (225)
                      .|
T Consensus       203 ~f  204 (265)
T 2oxt_A          203 KW  204 (265)
T ss_dssp             HH
T ss_pred             Hc
Confidence            44

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.24  E-value=2.1e-10  Score=98.45  Aligned_cols=100  Identities=19%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             CcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      .+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++++...++. +++.+...+....                 
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-----------------  229 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG-ERVSLVGGDMLQE-----------------  229 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT-TSEEEEESCTTTC-----------------
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC-CcEEEecCCCCCC-----------------
Confidence            8999999999999998876 45678999999 99999999988766554 3455555443221                 


Q ss_pred             ccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          139 HEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                             ....||+|++...+++     ...+++++.+.|||||.+++.+..
T Consensus       230 -------~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          230 -------VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             -------CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             -------CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                   2357999999877753     347899999999999999987553

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.24  E-value=8.9e-11  Score=103.40  Aligned_cols=102  Identities=22%  Similarity=0.298  Sum_probs=75.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCC---------------------------------------CeEEEEeCCHHHHHHH
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGVDIDPQAIKSA   97 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~---------------------------------------~~v~~vDi~~~~l~~a   97 (225)
                      .++..|||++||+|++++.++..+.                                       .+++|+|+++.+++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            4678999999999999998775421                                       4699999999999999


Q ss_pred             HHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHH
Q 041459           98 HQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIV  170 (225)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~  170 (225)
                      +.|+..+++. +.+.+...+...++                       ....||+|++|||+.       ....+...+.
T Consensus       274 r~Na~~~gl~-~~i~~~~~D~~~l~-----------------------~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg  329 (385)
T 3ldu_A          274 RENAEIAGVD-EYIEFNVGDATQFK-----------------------SEDEFGFIITNPPYGERLEDKDSVKQLYKELG  329 (385)
T ss_dssp             HHHHHHHTCG-GGEEEEECCGGGCC-----------------------CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC-CceEEEECChhhcC-----------------------cCCCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence            9999998875 34666665543331                       345899999999973       2334555555


Q ss_pred             HhccC--CeEEEEe
Q 041459          171 SYAKP--GAVVGIS  182 (225)
Q Consensus       171 ~~Lkp--gG~l~~~  182 (225)
                      +.||+  |+.+++.
T Consensus       330 ~~lk~~~g~~~~ii  343 (385)
T 3ldu_A          330 YAFRKLKNWSYYLI  343 (385)
T ss_dssp             HHHHTSBSCEEEEE
T ss_pred             HHHhhCCCCEEEEE
Confidence            56665  7776664

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.23  E-value=3.6e-10  Score=94.96  Aligned_cols=111  Identities=17%  Similarity=0.136  Sum_probs=78.7

Q ss_pred             CCcEEEEcccc---cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc---cc
Q 041459           59 GELFLDYGTGS---GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV---DG  131 (225)
Q Consensus        59 ~~~vlDiGcGt---G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  131 (225)
                      ..+|||+|||+   |.++..+.+ .+..+++++|+|+.|++.|++++...    ..+.+...+...... +....   ..
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~~~~~-~~~~~~~~~~  152 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVRDPEY-ILNHPDVRRM  152 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTTCHHH-HHHSHHHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCCCchh-hhccchhhcc
Confidence            47999999999   988766655 35678999999999999999887421    345566555433200 00000   00


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCC
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                      +             +..+||+|+++..+++     ...++.++.+.|||||.+++++...+
T Consensus       153 ~-------------d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          153 I-------------DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             C-------------CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             C-------------CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence            1             3357999999887765     56789999999999999999876553

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.23  E-value=7e-11  Score=99.53  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             CCCcEEEEcccccH----HHHHHHhc-C----CCeEEEEeCCHHHHHHHHHHHHhc----CCC---------------C-
Q 041459           58 GGELFLDYGTGSGI----LGIAAIKF-G----AAMSVGVDIDPQAIKSAHQNAALN----NIG---------------P-  108 (225)
Q Consensus        58 ~~~~vlDiGcGtG~----~~~~l~~~-~----~~~v~~vDi~~~~l~~a~~~~~~~----~~~---------------~-  108 (225)
                      ++.+|||+|||||.    +++.+++. +    ..+|+|+|+|+.||+.|++++...    +++               . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999997    56666653 3    248999999999999999875211    110               0 


Q ss_pred             ---------CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhcc
Q 041459          109 ---------KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAK  174 (225)
Q Consensus       109 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lk  174 (225)
                               ..+.+...+....                     .+...++||+|+|...+.+     ...++..+.+.|+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~---------------------~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~  243 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK---------------------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK  243 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS---------------------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE
T ss_pred             ceeechhhcccCeEEecccCCC---------------------CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC
Confidence                     0122222222111                     0112468999999655432     4678999999999


Q ss_pred             CCeEEEEe
Q 041459          175 PGAVVGIS  182 (225)
Q Consensus       175 pgG~l~~~  182 (225)
                      |||++++.
T Consensus       244 pgG~L~lg  251 (274)
T 1af7_A          244 PDGLLFAG  251 (274)
T ss_dssp             EEEEEEEC
T ss_pred             CCcEEEEE
Confidence            99999983

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.23  E-value=1.2e-10  Score=102.44  Aligned_cols=103  Identities=22%  Similarity=0.189  Sum_probs=77.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCC---------------------------------------CeEEEEeCCHHHHHH
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGVDIDPQAIKS   96 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~---------------------------------------~~v~~vDi~~~~l~~   96 (225)
                      ..++..++|.+||+|++++.++..+.                                       .+++|+|+++.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            34678999999999999998775322                                       359999999999999


Q ss_pred             HHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHH
Q 041459           97 AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHI  169 (225)
Q Consensus        97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~  169 (225)
                      |++|+..+++. +.+.+...+...++                       ....||+|++|||+.       ....+...+
T Consensus       272 Ar~Na~~~gl~-~~I~~~~~D~~~l~-----------------------~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~l  327 (384)
T 3ldg_A          272 ARKNAREVGLE-DVVKLKQMRLQDFK-----------------------TNKINGVLISNPPYGERLLDDKAVDILYNEM  327 (384)
T ss_dssp             HHHHHHHTTCT-TTEEEEECCGGGCC-----------------------CCCCSCEEEECCCCTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CceEEEECChHHCC-----------------------ccCCcCEEEECCchhhccCCHHHHHHHHHHH
Confidence            99999999886 35666665543331                       345899999999974       244555556


Q ss_pred             HHhccC--CeEEEEe
Q 041459          170 VSYAKP--GAVVGIS  182 (225)
Q Consensus       170 ~~~Lkp--gG~l~~~  182 (225)
                      .+.||+  ||.+++.
T Consensus       328 g~~lk~~~g~~~~ii  342 (384)
T 3ldg_A          328 GETFAPLKTWSQFIL  342 (384)
T ss_dssp             HHHHTTCTTSEEEEE
T ss_pred             HHHHhhCCCcEEEEE
Confidence            666665  8877764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.21  E-value=6.8e-12  Score=111.04  Aligned_cols=100  Identities=14%  Similarity=0.200  Sum_probs=72.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++.+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++    ++..     ..   ..+..   .....+ .  
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~-----~~---~~~~~---~~~~~l-~--  166 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRV-----RT---DFFEK---ATADDV-R--  166 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCE-----EC---SCCSH---HHHHHH-H--
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCc-----ce---eeech---hhHhhc-c--
Confidence            4678999999999999999988765 799999999999999865    3221     10   00000   000000 0  


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                              .++++||+|+++..+++   +..+++++.++|||||++++..
T Consensus       167 --------~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          167 --------RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             --------HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence                    03578999999988766   5678999999999999999863

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.20  E-value=6.4e-11  Score=104.27  Aligned_cols=115  Identities=16%  Similarity=0.140  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHhhccCCCcEEEEccc------ccHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEE
Q 041459           44 TTKLCLLLLQSLIKGGELFLDYGTG------SGILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHL  115 (225)
Q Consensus        44 ~~~~~~~~L~~~~~~~~~vlDiGcG------tG~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~  115 (225)
                      ........|..+..++.+|||+|||      +|..++.+++ + +..+|+|+|+++.|.        .   ...++.+..
T Consensus       202 y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~---~~~rI~fv~  270 (419)
T 3sso_A          202 FTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V---DELRIRTIQ  270 (419)
T ss_dssp             CHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G---CBTTEEEEE
T ss_pred             HHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h---cCCCcEEEE
Confidence            4555556666555568899999999      7777776554 3 678899999999872        1   113467777


Q ss_pred             ecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          116 VPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                      .+...+++     ...+.+           ..++||+|+++...  ......++++.+.|||||++++.++.
T Consensus       271 GDa~dlpf-----~~~l~~-----------~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          271 GDQNDAEF-----LDRIAR-----------RYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CCTTCHHH-----HHHHHH-----------HHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ecccccch-----hhhhhc-----------ccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            76654321     000000           14689999997543  34667899999999999999997554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.20  E-value=3.2e-10  Score=93.36  Aligned_cols=115  Identities=22%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             CCchHHHHHHHHHhh------ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE
Q 041459           41 EHATTKLCLLLLQSL------IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH  114 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~------~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~  114 (225)
                      .|.+++..+..|..+      ..++.+|||+|||+|.+++.+.  +..+|+|+|+++.+++.+++++..++..   ..+.
T Consensus        82 ~H~STrerLp~ld~fY~~i~~~~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~---~~~~  156 (253)
T 3frh_A           82 LHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD---FTFA  156 (253)
T ss_dssp             TSHHHHHHGGGHHHHHHHHTSSCCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE---EEEE
T ss_pred             hCCCHHHHhhhHHHHHHHHhcCCCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC---ceEE
Confidence            455666655544433      1357899999999999999877  7889999999999999999998887743   3444


Q ss_pred             EecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHH----HHHHHHHhccCCeEEEEec
Q 041459          115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQ----LADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~----~l~~~~~~LkpgG~l~~~~  183 (225)
                      ..+....+                       ..+.||+++++-.++++..    ..-.+.+.|+++++++-..
T Consensus       157 v~D~~~~~-----------------------~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          157 LQDVLCAP-----------------------PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             ECCTTTSC-----------------------CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             EeecccCC-----------------------CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            44433221                       4668999999977776542    3448888999999887643

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.20  E-value=1.3e-10  Score=99.02  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=63.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++..+++.  ++.+...+...+              
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~--~v~~~~~D~~~~--------------  102 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYN--NLEVYEGDAIKT--------------  102 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCC--CEEC----CCSS--------------
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEECchhhC--------------
Confidence            3467899999999999999998874 57999999999999999998766653  355555554433              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLA  166 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l  166 (225)
                                +...||+|++|+|++.....+
T Consensus       103 ----------~~~~~D~Vv~n~py~~~~~~~  123 (299)
T 2h1r_A          103 ----------VFPKFDVCTANIPYKISSPLI  123 (299)
T ss_dssp             ----------CCCCCSEEEEECCGGGHHHHH
T ss_pred             ----------CcccCCEEEEcCCcccccHHH
Confidence                      334799999999987654443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.18  E-value=6.6e-11  Score=104.54  Aligned_cols=125  Identities=20%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             CCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459           41 EHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV  116 (225)
Q Consensus        41 ~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~  116 (225)
                      .+.+...+.+.+...+  .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|           ..+.+...
T Consensus        20 ~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~   88 (421)
T 2ih2_A           20 RVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILA   88 (421)
T ss_dssp             -CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEES
T ss_pred             eEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeC
Confidence            3334444444443332  24679999999999999998864  567899999999988766           12344444


Q ss_pred             cCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh--------------H------------------HHH
Q 041459          117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--------------P------------------LLQ  164 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--------------~------------------~~~  164 (225)
                      +....                       ...++||+|++|||+.              .                  +..
T Consensus        89 D~~~~-----------------------~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (421)
T 2ih2_A           89 DFLLW-----------------------EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGA  145 (421)
T ss_dssp             CGGGC-----------------------CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHH
T ss_pred             Chhhc-----------------------CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHH
Confidence            32211                       1346899999998872              1                  114


Q ss_pred             HHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhh
Q 041459          165 LADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEF  199 (225)
Q Consensus       165 ~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~  199 (225)
                      +++.+.++|+|||.+++....    ......+++.+.+.
T Consensus       146 fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~  184 (421)
T 2ih2_A          146 FLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE  184 (421)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhc
Confidence            588899999999998885332    23445566655543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.17  E-value=3.2e-10  Score=96.39  Aligned_cols=90  Identities=17%  Similarity=0.199  Sum_probs=69.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++++..  .  .++.+...|...++.            
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~--~--~~v~vi~gD~l~~~~------------  110 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--Y--NNIEIIWGDALKVDL------------  110 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH--C--SSEEEEESCTTTSCG------------
T ss_pred             CCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc--C--CCeEEEECchhhCCc------------
Confidence            456889999999999999999887 46799999999999999998762  2  346677776654421            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY  172 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~  172 (225)
                                +...||+|++|+|++....++..+.+.
T Consensus       111 ----------~~~~fD~Iv~NlPy~is~pil~~lL~~  137 (295)
T 3gru_A          111 ----------NKLDFNKVVANLPYQISSPITFKLIKR  137 (295)
T ss_dssp             ----------GGSCCSEEEEECCGGGHHHHHHHHHHH
T ss_pred             ----------ccCCccEEEEeCcccccHHHHHHHHhc
Confidence                      344699999999998766665555543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.16  E-value=6.1e-11  Score=101.33  Aligned_cols=115  Identities=10%  Similarity=0.050  Sum_probs=71.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeC----CHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDI----DPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVD  130 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi----~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (225)
                      ++++.+|||+|||+|.++..+++.  .+|+|+|+    ++.+++.+    .........+.+... +...+         
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~D~~~l---------  144 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI----PMSTYGWNLVRLQSGVDVFFI---------  144 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC----CCCSTTGGGEEEECSCCTTTS---------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH----HhhhcCCCCeEEEeccccccC---------
Confidence            556889999999999999999887  57999999    55433211    011111122344333 22222         


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchh-------HHH--HHHHHHHHhccCCeEEEEeccCCC--cHHHHHHHHHhh
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLN-------PLL--QLADHIVSYAKPGAVVGISGILSE--QLPHIINRYSEF  199 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~--~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~  199 (225)
                                     +..+||+|+|+.+..       +..  ..+..+.++|||||.+++..+...  ....+...++..
T Consensus       145 ---------------~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~  209 (305)
T 2p41_A          145 ---------------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK  209 (305)
T ss_dssp             ---------------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             ---------------CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH
Confidence                           356899999986531       111  467888899999999988655442  223444444444


Q ss_pred             h
Q 041459          200 L  200 (225)
Q Consensus       200 ~  200 (225)
                      |
T Consensus       210 f  210 (305)
T 2p41_A          210 H  210 (305)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.15  E-value=8.7e-11  Score=108.34  Aligned_cols=106  Identities=16%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ...+.+|||+|||.|.++..+++.|+ +|+|+|.++.+|+.|+..+...+..  .+.+...+.+.+       ....   
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~~~~~-------~~~~---  130 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF--AAEFRVGRIEEV-------IAAL---  130 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECCHHHH-------HHHC---
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECCHHHH-------hhhc---
Confidence            34578999999999999999999986 5999999999999999988766632  255555544222       0111   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHH-----HHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQ-----LADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~-----~l~~~~~~LkpgG~l~~~~~  184 (225)
                                .+++||+|+|..+++|..+     .+..+.+.|+++|..++..+
T Consensus       131 ----------~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          131 ----------EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             ----------CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             ----------cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence                      4678999999999887542     24456666788777665444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.12  E-value=5e-10  Score=95.81  Aligned_cols=121  Identities=10%  Similarity=0.020  Sum_probs=82.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++|+..+++.+  +.+...+...+..          
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~--v~~~~~D~~~~~~----------  167 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC--CELAEEDFLAVSP----------  167 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCGGGSCT----------
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCChHhcCc----------
Confidence            457899999999999999998873  45789999999999999999999888753  5565554432210          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---------------------------HHHHHHHHHHhccCCeEEEEe-ccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---------------------------LLQLADHIVSYAKPGAVVGIS-GIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~-~~~  185 (225)
                               .......||.|++++|...                           ..+++..+.++++ ||+++++ |-.
T Consensus       168 ---------~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          168 ---------SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ---------TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             ---------cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence                     0001146999999877410                           1245777777787 8888775 322


Q ss_pred             -CCc-HHHHHHHHHh
Q 041459          186 -SEQ-LPHIINRYSE  198 (225)
Q Consensus       186 -~~~-~~~~~~~~~~  198 (225)
                       ..+ ...+...+++
T Consensus       238 ~~~Ene~~v~~~l~~  252 (309)
T 2b9e_A          238 CQEENEDVVRDALQQ  252 (309)
T ss_dssp             CGGGTHHHHHHHHTT
T ss_pred             ChHHhHHHHHHHHHh
Confidence             233 3344444443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.09  E-value=7.3e-10  Score=95.86  Aligned_cols=99  Identities=11%  Similarity=0.071  Sum_probs=70.3

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++ .+..+++++|+ +.++.  +++....+.. +++.+...+....              
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~-~~v~~~~~d~~~~--------------  244 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVA-GRWKVVEGDFLRE--------------  244 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGT-TSEEEEECCTTTC--------------
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCC-CCeEEEecCCCCC--------------
Confidence            3577999999999999998776 45668999999 44554  3232223332 3455555443210              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                .+ .||+|++...+++     ...+++++.++|||||.+++.+.
T Consensus       245 ----------~p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          245 ----------VP-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             ----------CC-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             ----------CC-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                      23 8999999887764     25789999999999999998655

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=2.1e-09  Score=89.50  Aligned_cols=93  Identities=16%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++...  .  .++.+...|...++.            
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~--~~v~~i~~D~~~~~~------------   89 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--Q--KNITIYQNDALQFDF------------   89 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--C--TTEEEEESCTTTCCG------------
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--C--CCcEEEEcchHhCCH------------
Confidence            4468899999999999999999876 6799999999999999988754  1  346677776655421            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY  172 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~  172 (225)
                            ..+.....|| |++|+|++.-..++.++...
T Consensus        90 ------~~~~~~~~~~-vv~NlPY~is~~il~~ll~~  119 (255)
T 3tqs_A           90 ------SSVKTDKPLR-VVGNLPYNISTPLLFHLFSQ  119 (255)
T ss_dssp             ------GGSCCSSCEE-EEEECCHHHHHHHHHHHHHT
T ss_pred             ------HHhccCCCeE-EEecCCcccCHHHHHHHHhC
Confidence                  0111235688 88999998766666655543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.07  E-value=3e-10  Score=104.17  Aligned_cols=138  Identities=18%  Similarity=0.185  Sum_probs=91.2

Q ss_pred             CCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc----C---------------CCeEEEEeCCHHHHHHHH
Q 041459           40 GEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF----G---------------AAMSVGVDIDPQAIKSAH   98 (225)
Q Consensus        40 ~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~----~---------------~~~v~~vDi~~~~l~~a~   98 (225)
                      |.+.|.+.+...+...  ..++.+|+|.|||||.+.+.+++.    .               ..+++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            4555555555554443  335789999999999998876642    1               136999999999999999


Q ss_pred             HHHHhcCCCCC---cceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-------------
Q 041459           99 QNAALNNIGPK---KMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-------------  162 (225)
Q Consensus        99 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-------------  162 (225)
                      .|+..+++...   ...+...+.-..+        .             ....+||+|++|||+...             
T Consensus       229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~--------~-------------~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~  287 (541)
T 2ar0_A          229 MNCLLHDIEGNLDHGGAIRLGNTLGSD--------G-------------ENLPKAHIVATNPPFGSAAGTNITRTFVHPT  287 (541)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHH--------H-------------HTSCCEEEEEECCCCTTCSSCCCCSCCSSCC
T ss_pred             HHHHHhCCCccccccCCeEeCCCcccc--------c-------------ccccCCeEEEECCCcccccchhhHhhcCCCC
Confidence            99988876531   1334443321110        0             034679999999997531             


Q ss_pred             ----HHHHHHHHHhccCCeEEEEeccC----C-CcHHHHHHHHHh
Q 041459          163 ----LQLADHIVSYAKPGAVVGISGIL----S-EQLPHIINRYSE  198 (225)
Q Consensus       163 ----~~~l~~~~~~LkpgG~l~~~~~~----~-~~~~~~~~~~~~  198 (225)
                          ..++..+.+.|||||++.+....    . .....+++.+.+
T Consensus       288 ~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~  332 (541)
T 2ar0_A          288 SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD  332 (541)
T ss_dssp             SCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhh
Confidence                25789999999999998875321    1 223455555544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.04  E-value=6.5e-09  Score=90.26  Aligned_cols=100  Identities=20%  Similarity=0.267  Sum_probs=74.9

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +..+|+|+|||+|.++..+++ ++..+++..|. |.+++.|++++...+.  +++.+...+  .+..             
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~--~rv~~~~gD--~~~~-------------  240 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE--EQIDFQEGD--FFKD-------------  240 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C--CSEEEEESC--TTTS-------------
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc--CceeeecCc--cccC-------------
Confidence            467999999999999998775 67778899997 8899999988764442  345555444  3310             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +...+|++++...+++     ...+++++++.|+|||.+++.+.
T Consensus       241 ---------~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          241 ---------PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             ---------CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ---------CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence                     3446899999777764     35689999999999999988654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.03  E-value=9.1e-10  Score=100.90  Aligned_cols=141  Identities=20%  Similarity=0.174  Sum_probs=94.3

Q ss_pred             CCCCchHHHHHHHHHhhc------cCCCcEEEEcccccHHHHHHHhc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 041459           39 TGEHATTKLCLLLLQSLI------KGGELFLDYGTGSGILGIAAIKF----GAAMSVGVDIDPQAIKSAHQNAALNNIGP  108 (225)
Q Consensus        39 ~~~~~~~~~~~~~L~~~~------~~~~~vlDiGcGtG~~~~~l~~~----~~~~v~~vDi~~~~l~~a~~~~~~~~~~~  108 (225)
                      .|.+.|.+.+.+++...+      .++.+|+|.+||||.+.+.+++.    +..+++|+|+++.++..|+.|+..+++..
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  275 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI  275 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence            345555555555554442      25779999999999998877653    35689999999999999999999888753


Q ss_pred             CcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----------------H----------
Q 041459          109 KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----------------L----------  162 (225)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----------------~----------  162 (225)
                      ..+.+...+.-...+                  .. ....+||+|++|||+..                +          
T Consensus       276 ~~~~I~~gDtL~~d~------------------p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~  336 (542)
T 3lkd_A          276 ENQFLHNADTLDEDW------------------PT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD  336 (542)
T ss_dssp             GGEEEEESCTTTSCS------------------CC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH
T ss_pred             CccceEecceecccc------------------cc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh
Confidence            344555544321100                  00 03568999999999731                0          


Q ss_pred             HHHHHHHHHhcc-CCeEEEEeccC-----CCcHHHHHHHHHh
Q 041459          163 LQLADHIVSYAK-PGAVVGISGIL-----SEQLPHIINRYSE  198 (225)
Q Consensus       163 ~~~l~~~~~~Lk-pgG~l~~~~~~-----~~~~~~~~~~~~~  198 (225)
                      -.++.++.+.|| +||++.+....     ......+++.+.+
T Consensus       337 ~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle  378 (542)
T 3lkd_A          337 FAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLE  378 (542)
T ss_dssp             HHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHh
Confidence            136889999999 99998764322     1223456655544

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.01  E-value=8.6e-09  Score=82.85  Aligned_cols=124  Identities=15%  Similarity=0.083  Sum_probs=81.5

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCcceEEEecCCCC-----C
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI--GPKKMKLHLVPDRTF-----P  122 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~-----~  122 (225)
                      ++|...+.+.++|||+||  |+-++++++....+++++|.++...+.|++++..+++  . +++.+..++....     |
T Consensus        22 ~~L~~~l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-~~I~~~~gda~~~~~wg~p   98 (202)
T 3cvo_A           22 EALRMAYEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG-TEVNIVWTDIGPTGDWGHP   98 (202)
T ss_dssp             HHHHHHHHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT-CEEEEEECCCSSBCGGGCB
T ss_pred             HHHHHHhhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-CceEEEEeCchhhhccccc
Confidence            333334456789999998  5677888875468899999999999999999998887  4 5677887764321     0


Q ss_pred             cccc--ccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          123 ASMN--ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      .+-.  +....+..     .+......+.||+|+++....  ...+..+.+.|+|||++++-.
T Consensus        99 ~~~~~~~~l~~~~~-----~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A           99 VSDAKWRSYPDYPL-----AVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             SSSTTGGGTTHHHH-----GGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETT
T ss_pred             ccchhhhhHHHHhh-----hhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeC
Confidence            0000  00000000     000011236799999987644  355666779999999998754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.00  E-value=1.8e-09  Score=90.75  Aligned_cols=115  Identities=15%  Similarity=0.066  Sum_probs=72.6

Q ss_pred             CcEEEEccccc--HHHHHHH-h-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           60 ELFLDYGTGSG--ILGIAAI-K-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        60 ~~vlDiGcGtG--~~~~~l~-~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+|||+|||++  ..+..++ + .+..+|+++|.|+.|++.|++++...+  ...+.+...+.....        .++..
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~~~~~--------~~l~~  149 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADMLDPA--------SILDA  149 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCTTCHH--------HHHTC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEecccChh--------hhhcc
Confidence            68999999973  2333333 3 467899999999999999998875432  234566666554321        00000


Q ss_pred             cccccccCCCCCCceeEEEeccchhHH------HHHHHHHHHhccCCeEEEEeccCCC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                      ...  -..+..+..+ .|+++..++++      ..++..+.+.|+|||+++++....+
T Consensus       150 ~~~--~~~~D~~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          150 PEL--RDTLDLTRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HHH--HTTCCTTSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             ccc--ccccCcCCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            000  0001112223 57788887653      4689999999999999999866554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.00  E-value=5.7e-09  Score=86.14  Aligned_cols=95  Identities=14%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++....    .++.+...+...++.            
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~~~~~~------------   90 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKF------------   90 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCC------------
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC----CCeEEEEChHHhCCc------------
Confidence            3467899999999999999998876 67999999999999999887531    235565555433211            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGA  177 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG  177 (225)
                               .....| .|++|+|++....++..+......++
T Consensus        91 ---------~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~  122 (244)
T 1qam_A           91 ---------PKNQSY-KIFGNIPYNISTDIIRKIVFDSIADE  122 (244)
T ss_dssp             ---------CSSCCC-EEEEECCGGGHHHHHHHHHHSCCCSE
T ss_pred             ---------ccCCCe-EEEEeCCcccCHHHHHHHHhcCCCCe
Confidence                     012345 68899999866655555554433333

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.99  E-value=1.1e-09  Score=92.88  Aligned_cols=110  Identities=12%  Similarity=0.161  Sum_probs=75.9

Q ss_pred             ccCCCcEEEEccc------ccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE-EEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTG------SGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL-HLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcG------tG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  127 (225)
                      ++++.+|||+|||      +|. ...+...+ ..+|+|+|+++.             +.  .+.+ ...+....+     
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-------------v~--~v~~~i~gD~~~~~-----  119 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-------------VS--DADSTLIGDCATVH-----  119 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-------------BC--SSSEEEESCGGGCC-----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-------------CC--CCEEEEECccccCC-----
Confidence            5678899999994      476 33333345 478999999997             11  2345 554433221     


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccch--------------hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                                        ..++||+|++|+..              +.+..+++.+.+.|||||.+++..+......++.
T Consensus       120 ------------------~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~  181 (290)
T 2xyq_A          120 ------------------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLY  181 (290)
T ss_dssp             ------------------CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHH
T ss_pred             ------------------ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHH
Confidence                              23679999998542              2245789999999999999999777666667888


Q ss_pred             HHHHhh-hhhhc
Q 041459          194 NRYSEF-LEDIL  204 (225)
Q Consensus       194 ~~~~~~-~~~~~  204 (225)
                      ..+++. |..+.
T Consensus       182 ~~l~~~GF~~v~  193 (290)
T 2xyq_A          182 KLMGHFSWWTAF  193 (290)
T ss_dssp             HHHTTEEEEEEE
T ss_pred             HHHHHcCCcEEE
Confidence            888776 65443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.99  E-value=3.3e-09  Score=100.02  Aligned_cols=104  Identities=25%  Similarity=0.306  Sum_probs=74.3

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcC-------------------------------------------CCeEEEEeCCHHH
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFG-------------------------------------------AAMSVGVDIDPQA   93 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~-------------------------------------------~~~v~~vDi~~~~   93 (225)
                      .++..|+|.+||+|++++.++..+                                           ..+++|+|+++.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            467899999999999999876531                                           1469999999999


Q ss_pred             HHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------HHHH-
Q 041459           94 IKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------LLQL-  165 (225)
Q Consensus        94 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~-  165 (225)
                      ++.|+.|+..+++. +.+.+...+...+..       .             ...+.||+|++||||..       ...+ 
T Consensus       269 v~~A~~N~~~agv~-~~i~~~~~D~~~~~~-------~-------------~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly  327 (703)
T 3v97_A          269 IQRARTNARLAGIG-ELITFEVKDVAQLTN-------P-------------LPKGPYGTVLSNPPYGERLDSEPALIALH  327 (703)
T ss_dssp             HHHHHHHHHHTTCG-GGEEEEECCGGGCCC-------S-------------CTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred             HHHHHHHHHHcCCC-CceEEEECChhhCcc-------c-------------cccCCCCEEEeCCCccccccchhHHHHHH
Confidence            99999999999986 346666655432210       0             01237999999999842       2233 


Q ss_pred             --HHHHHHhccCCeEEEE
Q 041459          166 --ADHIVSYAKPGAVVGI  181 (225)
Q Consensus       166 --l~~~~~~LkpgG~l~~  181 (225)
                        +..+.+.+.|||.+++
T Consensus       328 ~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          328 SLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHhhCCCCeEEE
Confidence              3444455568998877

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.94  E-value=1.5e-09  Score=99.51  Aligned_cols=139  Identities=19%  Similarity=0.159  Sum_probs=92.9

Q ss_pred             CCCCchHHHHHHHHHhhccC-CCcEEEEcccccHHHHHHHhc--------C--------CCeEEEEeCCHHHHHHHHHHH
Q 041459           39 TGEHATTKLCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKF--------G--------AAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        39 ~~~~~~~~~~~~~L~~~~~~-~~~vlDiGcGtG~~~~~l~~~--------~--------~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      .|.+.|.+.+.+++...+.+ ..+|+|.+||||.+.+.+++.        .        ..+++|+|+++.++..|+.|+
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl  303 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM  303 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence            35666777766666555332 249999999999998876431        1        357999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHH-------------------
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-------------------  162 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-------------------  162 (225)
                      ..+++.. .+.+.  .++.+..                   ......+||+|++|||+...                   
T Consensus       304 ~l~gi~~-~i~i~--~gDtL~~-------------------~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~  361 (544)
T 3khk_A          304 VIRGIDF-NFGKK--NADSFLD-------------------DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNG  361 (544)
T ss_dssp             HHTTCCC-BCCSS--SCCTTTS-------------------CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC-
T ss_pred             HHhCCCc-cccee--ccchhcC-------------------cccccccccEEEECCCcCCccccchhhhhhhhhhcCccc
Confidence            9888763 22212  2222210                   00035689999999997520                   


Q ss_pred             -------------HHHHHHHHHhccCCeEEEEeccC----C--CcHHHHHHHHHhh
Q 041459          163 -------------LQLADHIVSYAKPGAVVGISGIL----S--EQLPHIINRYSEF  199 (225)
Q Consensus       163 -------------~~~l~~~~~~LkpgG~l~~~~~~----~--~~~~~~~~~~~~~  199 (225)
                                   -.++..+.+.|||||++.+....    .  .....+++.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~  417 (544)
T 3khk_A          362 EKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQ  417 (544)
T ss_dssp             -CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHT
T ss_pred             ccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhC
Confidence                         14688999999999997764321    2  2345666665543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.93  E-value=3.5e-11  Score=99.35  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=69.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++..  .  ...+.+...+...++.            
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~--~~~v~~~~~D~~~~~~------------   89 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--L--NTRVTLIHQDILQFQF------------   89 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--T--CSEEEECCSCCTTTTC------------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--c--CCceEEEECChhhcCc------------
Confidence            3467899999999999999998876 789999999999998887754  1  1345555555443311            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHH----HHHH--------------HHHHHhccCCeEEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPL----LQLA--------------DHIVSYAKPGAVVGI  181 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~----~~~l--------------~~~~~~LkpgG~l~~  181 (225)
                               ...++| .|++|+|+...    ..++              +.+.++|||||.+++
T Consensus        90 ---------~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           90 ---------PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             ---------CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             ---------ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence                     013578 78899987532    1222              457778888877655

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.92  E-value=3.9e-09  Score=88.65  Aligned_cols=89  Identities=17%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++ +|||+|||+|.++..+++.+ .+++|+|+++.+++.++++...     .++.+...|...++.            
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~-----~~v~vi~~D~l~~~~------------  105 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG-----LPVRLVFQDALLYPW------------  105 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT-----SSEEEEESCGGGSCG------------
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC-----CCEEEEECChhhCCh------------
Confidence            4467 99999999999999999886 6799999999999999988652     245666665543311            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY  172 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~  172 (225)
                               .....+|.|++|+|++.-..++.++...
T Consensus       106 ---------~~~~~~~~iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          106 ---------EEVPQGSLLVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             ---------GGSCTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred             ---------hhccCccEEEecCcccccHHHHHHHhcC
Confidence                     0112589999999997655555554443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.92  E-value=6e-09  Score=98.43  Aligned_cols=120  Identities=11%  Similarity=0.026  Sum_probs=76.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-C---CCeEEEEeCCHHHHHHH--HHHHHhcCCCCC--cceEEEecCCCCCccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-G---AAMSVGVDIDPQAIKSA--HQNAALNNIGPK--KMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~---~~~v~~vDi~~~~l~~a--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  129 (225)
                      ++.+|+|.|||+|.+++.+++. +   ..+++|+|+++.+++.|  +.++..+.+...  ...+..  .+.+.     . 
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~--dD~L~-----~-  392 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITG--EDVCS-----L-  392 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEEC--CCGGG-----C-
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEe--cchhc-----c-
Confidence            4789999999999999988764 2   35799999999999999  666544332210  111221  11110     0 


Q ss_pred             cccccccccccccCCCCCCceeEEEeccchhH--------------------------------HHHHHHHHHHhccCCe
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------------------------LLQLADHIVSYAKPGA  177 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------------------------~~~~l~~~~~~LkpgG  177 (225)
                                   ......+||+|++|||+..                                +..++..+.++|++||
T Consensus       393 -------------~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGG  459 (878)
T 3s1s_A          393 -------------NPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGT  459 (878)
T ss_dssp             -------------CGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTC
T ss_pred             -------------cccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCc
Confidence                         0003467999999999821                                1235788999999999


Q ss_pred             EEEEeccCC------CcHHHHHHHHHh
Q 041459          178 VVGISGILS------EQLPHIINRYSE  198 (225)
Q Consensus       178 ~l~~~~~~~------~~~~~~~~~~~~  198 (225)
                      .+++.....      .....+++.+.+
T Consensus       460 rLAfIlP~s~Lf~sg~~~kkLRk~LLe  486 (878)
T 3s1s_A          460 VISAIMPKQYLTAQGNESKAFREFLVG  486 (878)
T ss_dssp             EEEEEEETHHHHCCSHHHHHHHHHHTT
T ss_pred             EEEEEEChHHhccCChHHHHHHHHHHh
Confidence            988743321      124555555543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.92  E-value=4.6e-08  Score=82.83  Aligned_cols=143  Identities=15%  Similarity=0.152  Sum_probs=101.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc---CCCCCcceEEEecCCCCCcccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN---NIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ...++||-+|.|.|..+..+++. +..+++.+|+++.+++.|++.+...   .++..++++...|+..+-.         
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~---------  152 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN---------  152 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS---------
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh---------
Confidence            35789999999999999998875 5789999999999999999887532   2334577888877755411         


Q ss_pred             ccccccccccCCCCCCceeEEEeccchh-------HHHHHHHHHHHhccCCeEEEEec---cC-CCcHHHHHHHHHhhhh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISG---IL-SEQLPHIINRYSEFLE  201 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~---~~-~~~~~~~~~~~~~~~~  201 (225)
                                  ...++||+|+++.+-.       .-.++.+.+.+.|+|||+++...   +. .+....+.+.+++.|.
T Consensus       153 ------------~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~  220 (294)
T 3o4f_A          153 ------------QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFS  220 (294)
T ss_dssp             ------------CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCS
T ss_pred             ------------hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCC
Confidence                        1456899999975421       12567889999999999999731   11 2334445555555554


Q ss_pred             hhc-------ccccCCceEEEeeeec
Q 041459          202 DIL-------LSEMDDWTCVSGTKKR  220 (225)
Q Consensus       202 ~~~-------~~~~~~w~~~~~~k~~  220 (225)
                      .+.       ....|.|.-..+.|+.
T Consensus       221 ~v~~~~~~vPty~~g~w~f~~as~~~  246 (294)
T 3o4f_A          221 DVGFYQAAIPTYYGGIMTFAWATDND  246 (294)
T ss_dssp             EEEEEEECCTTSSSSCEEEEEEESCT
T ss_pred             ceeeeeeeeccCCCcceeheeEECCC
Confidence            332       2346889888777753

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.91  E-value=5e-09  Score=91.45  Aligned_cols=94  Identities=14%  Similarity=0.175  Sum_probs=69.7

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|+++        .++.+...+... +.             
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~-------------  259 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDMFD-GV-------------  259 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CC-------------
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCCCC-CC-------------
Confidence            467999999999999998876 56778999999 8888766531        235555544322 10             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               +. . |+|++...+++     ...++++++++|||||.+++.+..
T Consensus       260 ---------p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          260 ---------PK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             ---------CC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             ---------CC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                     32 3 99999887763     346899999999999999987654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.90  E-value=9.7e-09  Score=85.16  Aligned_cols=99  Identities=16%  Similarity=0.241  Sum_probs=69.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++..+++.+..+++|+|+++.+++.++++ .     ..++.+...|...++..           
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~-----~~~v~~i~~D~~~~~~~-----------   91 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G-----DERLEVINEDASKFPFC-----------   91 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C-----CTTEEEECSCTTTCCGG-----------
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c-----CCCeEEEEcchhhCChh-----------
Confidence            346789999999999999999988778899999999999999876 1     13456666665444210           


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhc--cCCeEEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA--KPGAVVGI  181 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~L--kpgG~l~~  181 (225)
                             .  ....+ .|++|+|++....++.++....  -+.+++++
T Consensus        92 -------~--~~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~  129 (249)
T 3ftd_A           92 -------S--LGKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMV  129 (249)
T ss_dssp             -------G--SCSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             -------H--ccCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence                   0  01134 8889999987777666666543  23444544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.88  E-value=7.6e-09  Score=90.21  Aligned_cols=94  Identities=17%  Similarity=0.147  Sum_probs=70.2

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++.        .++.+...+... +.             
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~-------------  257 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------PGVTHVGGDMFK-EV-------------  257 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CC-------------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------CCeEEEeCCcCC-CC-------------
Confidence            468999999999999998776 56778999999 8888766531        235555544322 10             


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               +. . |+|++...+++     ...++++++++|||||.+++.+..
T Consensus       258 ---------p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          258 ---------PS-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             ---------CC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             ---------CC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                     32 3 99999877764     357899999999999999987654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.87  E-value=4.9e-09  Score=91.43  Aligned_cols=94  Identities=18%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.        ..+.+...+....              
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~--------------  264 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL--------SGIEHVGGDMFAS--------------  264 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTTC--------------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--------CCCEEEeCCcccC--------------
Confidence            35689999999999999988764 5668999999 8888776531        1245554443221              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ... ||+|+++..+++.     ..+++++.++|||||.+++.+.
T Consensus       265 ----------~~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  307 (372)
T 1fp1_D          265 ----------VPQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  307 (372)
T ss_dssp             ----------CCC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------CCC-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                      122 9999998887642     3789999999999999998754

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.86  E-value=7e-09  Score=89.76  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.      .  .+.+...+....              
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~d~~~~--------------  243 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------N--NLTYVGGDMFTS--------------  243 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------T--TEEEEECCTTTC--------------
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------C--CcEEEeccccCC--------------
Confidence            35689999999999999988764 5678999999 9998877531      1  244554443110              


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccC---CeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKP---GAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lkp---gG~l~~~~~~  185 (225)
                                .+ .||+|++...+++     ...+++++.++|||   ||.+++.+..
T Consensus       244 ----------~p-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          244 ----------IP-NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             ----------CC-CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             ----------CC-CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence                      12 3999999888764     23789999999999   9999987653

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.85  E-value=2.2e-09  Score=83.54  Aligned_cols=105  Identities=9%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +++|.+|||+|||+               +++|+++.|++.|+++...      .+.+...+...++.      ...   
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~------~~~~~~~d~~~~~~------~~~---   59 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN------EGRVSVENIKQLLQ------SAH---   59 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT------TSEEEEEEGGGGGG------GCC---
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc------CcEEEEechhcCcc------ccC---
Confidence            56799999999996               2399999999999987532      14555555433210      000   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHH----HHHHHHHHHhccCCeEEEEeccCC---------CcHHHHHHHHHhh-h
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPL----LQLADHIVSYAKPGAVVGISGILS---------EQLPHIINRYSEF-L  200 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~-~  200 (225)
                                ++++||+|+++..+++.    ..++.++++.|||||.+++.....         ....++.+.+.+. |
T Consensus        60 ----------~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           60 ----------KESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             ----------CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             ----------CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence                      35689999998776654    778999999999999999853311         1245666666654 5

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.85  E-value=1.1e-09  Score=91.42  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH-------HHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP-------QAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~-------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      .++.+|||+|||+|.+++.+++.+ .+|+++|+++       .+++.|++|+..+++. +++.+...+...+       +
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-~ri~~~~~d~~~~-------l  152 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-ARINLHFGNAAEQ-------M  152 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-TTEEEEESCHHHH-------H
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-cCeEEEECCHHHH-------H
Confidence            356899999999999999999875 4699999999       9999999998877754 2355655443211       0


Q ss_pred             cccccccccccccCCCCC--CceeEEEeccchhH
Q 041459          130 DGIVEDLSSHEIRGISET--EKYDVVIANILLNP  161 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~--~~~DvIi~~~~~~~  161 (225)
                      ..+             +.  .+||+|++++++.+
T Consensus       153 ~~~-------------~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          153 PAL-------------VKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHH-------------HHHHCCCSEEEECCCC--
T ss_pred             Hhh-------------hccCCCccEEEECCCCCC
Confidence            001             22  67999999998754

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.85  E-value=4e-09  Score=93.35  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.+|.+|||+|||+|..++.+++.+ .+|+++|+++.+++.|++|+..+  ++.  ++.+...+...+       +... 
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~--~i~~i~~Da~~~-------L~~~-  159 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGK--DVNILTGDFKEY-------LPLI-  159 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTC--EEEEEESCGGGS-------HHHH-
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCC--cEEEEECcHHHh-------hhhc-
Confidence            4458999999999999999988875 57999999999999999999877  663  466665554321       0000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                                  ...+||+|+++||+..
T Consensus       160 ------------~~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          160 ------------KTFHPDYIYVDPARRS  175 (410)
T ss_dssp             ------------HHHCCSEEEECCEEC-
T ss_pred             ------------cCCCceEEEECCCCcC
Confidence                        1247999999998743

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.84  E-value=1.1e-08  Score=94.94  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             CCcEEEEcccccHHHHHH---HhcCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAA---IKFGAA--MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l---~~~~~~--~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +..|+|+|||+|.+...+   ++.+..  +|+|||.++ +...|++....|++. +++++..++.+...           
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~-dkVtVI~gd~eev~-----------  424 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG-SQVTVVSSDMREWV-----------  424 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG-GGEEEEESCTTTCC-----------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC-CeEEEEeCcceecc-----------
Confidence            357999999999885543   333333  689999998 566788888889987 67888887776542           


Q ss_pred             cccccccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEE
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                                  .++++|+|++.++-     +.+...+....++|||||+++-
T Consensus       425 ------------LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          425 ------------APEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             ------------CSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             ------------CCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence                        56799999996552     3344677788899999999873

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.80  E-value=3.3e-08  Score=85.65  Aligned_cols=95  Identities=17%  Similarity=0.107  Sum_probs=69.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++      ..  .+.+...+...               
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~v~~~~~d~~~---------------  247 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NE--NLNFVGGDMFK---------------  247 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CS--SEEEEECCTTT---------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CC--CcEEEeCccCC---------------
Confidence            35689999999999999998764 5668999999 788866643      11  24454443321               


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccC---CeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKP---GAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lkp---gG~l~~~~~~  185 (225)
                                +...||+|+++..+++     ...+++++.++|||   ||.+++.+..
T Consensus       248 ----------~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          248 ----------SIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             ----------CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             ----------CCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence                      1124999999888764     33789999999999   9999886553

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.79  E-value=3.5e-08  Score=83.18  Aligned_cols=93  Identities=26%  Similarity=0.264  Sum_probs=65.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAA---MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~---~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ..++.+|||+|||+|.++..+++.+..   +++|+|+++.+++.++++.   .   .++.+...|...++..        
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~---~~v~~i~~D~~~~~~~--------  105 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G---ELLELHAGDALTFDFG--------  105 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G---GGEEEEESCGGGCCGG--------
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C---CCcEEEECChhcCChh--------
Confidence            446889999999999999998876432   3999999999999999883   1   3466666665443210        


Q ss_pred             ccccccccccCCCC--CCceeEEEeccchhHHHHHHHHHHHh
Q 041459          133 VEDLSSHEIRGISE--TEKYDVVIANILLNPLLQLADHIVSY  172 (225)
Q Consensus       133 ~~~~~~~~~~~~~~--~~~~DvIi~~~~~~~~~~~l~~~~~~  172 (225)
                                .+..  ......|++|+|++.-..++.++...
T Consensus       106 ----------~~~~~~~~~~~~vv~NlPY~iss~il~~ll~~  137 (279)
T 3uzu_A          106 ----------SIARPGDEPSLRIIGNLPYNISSPLLFHLMSF  137 (279)
T ss_dssp             ----------GGSCSSSSCCEEEEEECCHHHHHHHHHHHGGG
T ss_pred             ----------HhcccccCCceEEEEccCccccHHHHHHHHhc
Confidence                      0001  11345788999998877776665543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.74  E-value=2.1e-08  Score=85.36  Aligned_cols=85  Identities=18%  Similarity=0.289  Sum_probs=61.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++..++   .++.+...+...++        ..+.
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~--------~~l~   92 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREAD--------FLLK   92 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHH--------HHHH
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHH--------HHHH
Confidence            446889999999999999998875 46789999999999999999987765   24555554432220        0000


Q ss_pred             ccccccccCCCCCCceeEEEeccchh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLN  160 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~  160 (225)
                      .        . ...+||.|++++++.
T Consensus        93 ~--------~-g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           93 T--------L-GIEKVDGILMDLGVS  109 (301)
T ss_dssp             H--------T-TCSCEEEEEEECSCC
T ss_pred             h--------c-CCCCCCEEEEcCccc
Confidence            0        0 125799999988764

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.72  E-value=7.5e-08  Score=83.87  Aligned_cols=107  Identities=20%  Similarity=0.256  Sum_probs=78.9

Q ss_pred             hccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCC----CcceEEEecCCCCCccccccc
Q 041459           55 LIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGP----KKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      .+++|.+|||++||+|+-+.+++..+ ...++++|+++.-++..++++...+...    ..+.+...++..+.       
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~-------  217 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG-------  217 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH-------
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc-------
Confidence            46689999999999999999888754 3579999999999999999998776542    23444443332210       


Q ss_pred             cccccccccccccCCCCCCceeEEEeccchhH---------------------------HHHHHHHHHHhccCCeEEEEe
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP---------------------------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                       ..             ..+.||.|+++.|...                           ...++..+.++|||||+++.+
T Consensus       218 -~~-------------~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs  283 (359)
T 4fzv_A          218 -EL-------------EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS  283 (359)
T ss_dssp             -HH-------------STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -hh-------------ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence             11             3568999999876210                           246789999999999998875

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.70  E-value=1.4e-07  Score=86.33  Aligned_cols=141  Identities=17%  Similarity=0.223  Sum_probs=91.6

Q ss_pred             CCCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc----C----------CCeEEEEeCCHHHHHHHHHHHH
Q 041459           39 TGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF----G----------AAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        39 ~~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~----~----------~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .|++-|.+.+.+++...+  .++.+|+|.+||||.+.+.+.+.    .          ...++|+|+++.+...|+-|+.
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            466667777777666553  45779999999999998876532    1          2469999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-------------------HH
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------------LL  163 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------~~  163 (225)
                      .++....  .+...+.-..+.                  .......+||+|++|||+..                   ..
T Consensus       276 lhg~~~~--~I~~~dtL~~~~------------------~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~  335 (530)
T 3ufb_A          276 LHGLEYP--RIDPENSLRFPL------------------REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAM  335 (530)
T ss_dssp             HHTCSCC--EEECSCTTCSCG------------------GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHH
T ss_pred             hcCCccc--cccccccccCch------------------hhhcccccceEEEecCCCCccccccccccCchhcccchhHH
Confidence            8887642  233333211100                  00013457999999999831                   12


Q ss_pred             HHHHHHHHhcc-------CCeEEEEecc----CC-CcHHHHHHHHHhh
Q 041459          164 QLADHIVSYAK-------PGAVVGISGI----LS-EQLPHIINRYSEF  199 (225)
Q Consensus       164 ~~l~~~~~~Lk-------pgG~l~~~~~----~~-~~~~~~~~~~~~~  199 (225)
                      .++..+.+.||       +||++.+...    .. .....+++.+-+.
T Consensus       336 ~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~  383 (530)
T 3ufb_A          336 LFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN  383 (530)
T ss_dssp             HHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc
Confidence            35777888887       6898776422    12 2334466555543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.69  E-value=5.9e-07  Score=75.71  Aligned_cols=140  Identities=9%  Similarity=-0.052  Sum_probs=94.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhc------CCCeEEEEeCCH--------------------------HHHHHHHHHHHhcC
Q 041459           58 GGELFLDYGTGSGILGIAAIKF------GAAMSVGVDIDP--------------------------QAIKSAHQNAALNN  105 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~------~~~~v~~vDi~~--------------------------~~l~~a~~~~~~~~  105 (225)
                      ....|||+|+..|..++.+++.      +..+++++|..+                          ..++.+++++...+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4679999999999988876642      257799999642                          14677899999888


Q ss_pred             CCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEecc
Q 041459          106 IGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      +..+++.+..++....       +            +.+ +.++||+|+.+.-. ......++.+...|+|||++++-++
T Consensus       186 l~~~~I~li~Gda~et-------L------------~~~-~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDT-------L------------PTA-PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CCSTTEEEEESCHHHH-------S------------TTC-CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCcCceEEEEeCHHHH-------H------------hhC-CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            7445677776554211       1            111 34689999998765 4567889999999999999999766


Q ss_pred             CCCcHHHHHHHHHhhhhhhc---ccccCCceEEEeeee
Q 041459          185 LSEQLPHIINRYSEFLEDIL---LSEMDDWTCVSGTKK  219 (225)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~---~~~~~~w~~~~~~k~  219 (225)
                      ..  .+...+.+.++.....   ....-+|..+.++|.
T Consensus       246 ~~--~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk~  281 (282)
T 2wk1_A          246 MM--CPPCKDAVDEYRAKFDIADELITIDRDGVYWQRT  281 (282)
T ss_dssp             TT--CHHHHHHHHHHHHHTTCCSCCEECSSSCEEEECC
T ss_pred             CC--CHHHHHHHHHHHHhcCCceEEEEecCEEEEEEeC
Confidence            32  1233344444432222   122345778888875

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.67  E-value=2.2e-07  Score=77.59  Aligned_cols=123  Identities=11%  Similarity=0.087  Sum_probs=78.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++..+++. +...+.|+|+...+.....   ...... ..+.....+.+..             
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi---~~~~~g-~~ii~~~~~~dv~-------------  134 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM---NVQSLG-WNIITFKDKTDIH-------------  134 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCC---CCCBTT-GGGEEEECSCCTT-------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccc---ccCcCC-CCeEEEeccceeh-------------
Confidence            567889999999999999988764 6777889998743210000   000000 0122222111111             


Q ss_pred             ccccccccCCCCCCceeEEEeccchh----H---HH--HHHHHHHHhccCC-eEEEEeccC--CCcHHHHHHHHHhhhhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLN----P---LL--QLADHIVSYAKPG-AVVGISGIL--SEQLPHIINRYSEFLED  202 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~----~---~~--~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~~~~  202 (225)
                              . .....+|+|+|+...+    .   ..  .+++.+.++|||| |.+++..+.  ..+..++...++..|..
T Consensus       135 --------~-l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~  205 (277)
T 3evf_A          135 --------R-LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGG  205 (277)
T ss_dssp             --------T-SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred             --------h-cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCC
Confidence                    0 0467899999987443    1   12  3467788999999 999998777  67778888888877754


Q ss_pred             hc
Q 041459          203 IL  204 (225)
Q Consensus       203 ~~  204 (225)
                      +.
T Consensus       206 V~  207 (277)
T 3evf_A          206 TV  207 (277)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.66  E-value=6.7e-08  Score=80.22  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..++.+|||+|||+|.++. +.+.+..+++|+|+++.+++.++++....    .++.+...|...++.  .+. ..    
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~--~~~-~~----   86 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNF--GEL-AE----   86 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCH--HHH-HH----
T ss_pred             CCCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCH--HHh-hc----
Confidence            4467899999999999999 66532223999999999999998876432    235565555433211  000 00    


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS  171 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~  171 (225)
                                ..+..+.|++|+|+.....++.++..
T Consensus        87 ----------~~~~~~~vvsNlPY~i~~~il~~ll~  112 (252)
T 1qyr_A           87 ----------KMGQPLRVFGNLPYNISTPLMFHLFS  112 (252)
T ss_dssp             ----------HHTSCEEEEEECCTTTHHHHHHHHHT
T ss_pred             ----------ccCCceEEEECCCCCccHHHHHHHHh
Confidence                      01235899999999876665554443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.64  E-value=5.1e-08  Score=90.89  Aligned_cols=104  Identities=16%  Similarity=0.237  Sum_probs=70.6

Q ss_pred             CCcEEEEcccccHHHHH---HHh-cC----------CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcc
Q 041459           59 GELFLDYGTGSGILGIA---AIK-FG----------AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPAS  124 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~---l~~-~~----------~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (225)
                      ++.|+|+|||+|.++..   +++ .+          ..+|+|||.++.++..++.... +++. +++.+..++.+.+.. 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~-d~VtVI~gd~eev~l-  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK-RRVTIIESDMRSLPG-  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT-TCSEEEESCGGGHHH-
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC-CeEEEEeCchhhccc-
Confidence            45899999999999653   222 12          3489999999988766665544 7776 567777766544310 


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEE
Q 041459          125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~  181 (225)
                             .+         .....+++|+|++-++-.     ...+.+..+.++|||||+++-
T Consensus       487 -------p~---------~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          487 -------IA---------KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             -------HH---------HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             -------cc---------ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence                   00         000257899999976522     245677778899999998873

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.56  E-value=2.2e-07  Score=81.11  Aligned_cols=146  Identities=18%  Similarity=0.187  Sum_probs=92.5

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC---CCC---CcceEEEecCCCCCcccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN---IGP---KKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      .++++||-+|.|.|..+..+++.+..+++.||+++.+++.|++.+....   ++.   .++++...|+..          
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~----------  273 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP----------  273 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH----------
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH----------
Confidence            3568999999999999999888777899999999999999998754211   111   234555544321          


Q ss_pred             ccccccccccccCCCCCCceeEEEeccch-------------hHHHHHHHHHHHhccCCeEEEEecc---CCCcHHHHHH
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILL-------------NPLLQLADHIVSYAKPGAVVGISGI---LSEQLPHIIN  194 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~  194 (225)
                       ++...       .+..++||+|+.+.+-             ...+++++.+.+.|+|||+++....   ..+....+.+
T Consensus       274 -fl~~~-------~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~  345 (381)
T 3c6k_A          274 -VLKRY-------AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEE  345 (381)
T ss_dssp             -HHHHH-------HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHH
T ss_pred             -HHHhh-------hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHH
Confidence             11100       0034679999997421             1135678899999999999987422   1222344455


Q ss_pred             HHHhhhhhhcc--------cccCCceEEEeeeec
Q 041459          195 RYSEFLEDILL--------SEMDDWTCVSGTKKR  220 (225)
Q Consensus       195 ~~~~~~~~~~~--------~~~~~w~~~~~~k~~  220 (225)
                      .++..|..+..        ...+.|.=..+.|+.
T Consensus       346 tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~~  379 (381)
T 3c6k_A          346 QLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKKA  379 (381)
T ss_dssp             HHTTSSSCEEEEEEEECCGGGSSCEEEEEEEECC
T ss_pred             HHHHhCCcceEeeEEEEecCCCCceeeeEEECCC
Confidence            55554432221        123679766666653

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.56  E-value=5e-08  Score=81.60  Aligned_cols=123  Identities=12%  Similarity=0.077  Sum_probs=79.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++.+|||+|||+|.++..+++ .+...+.|+|+...+...+..   ..... ..+.....+.+.         ..+  
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~---~~~~g-~~ii~~~~~~dv---------~~l--  152 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM---RTTLG-WNLIRFKDKTDV---------FNM--  152 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCBTT-GGGEEEECSCCG---------GGS--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc---cccCC-CceEEeeCCcch---------hhc--
Confidence            66788999999999999998874 577789999997643211100   00000 111111111110         011  


Q ss_pred             ccccccccCCCCCCceeEEEeccchh-------HHH--HHHHHHHHhccCC--eEEEEeccC--CCcHHHHHHHHHhhhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLN-------PLL--QLADHIVSYAKPG--AVVGISGIL--SEQLPHIINRYSEFLE  201 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~~--~~l~~~~~~Lkpg--G~l~~~~~~--~~~~~~~~~~~~~~~~  201 (225)
                                 +..++|+|+|+...+       +..  .+++-+.++|+||  |.+++..+.  ..+..++...++..|.
T Consensus       153 -----------~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~  221 (282)
T 3gcz_A          153 -----------EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHG  221 (282)
T ss_dssp             -----------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred             -----------CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcC
Confidence                       467899999976543       222  3577778999999  999998887  7778888888887775


Q ss_pred             hhc
Q 041459          202 DIL  204 (225)
Q Consensus       202 ~~~  204 (225)
                      .+.
T Consensus       222 ~V~  224 (282)
T 3gcz_A          222 GGL  224 (282)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.44  E-value=1.6e-07  Score=78.26  Aligned_cols=97  Identities=14%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             cCC--CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC--------CCCCcceEEEecCCCCCcccc
Q 041459           57 KGG--ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN--------IGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        57 ~~~--~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      +++  .+|||+|||+|..++.+++.+. +|+++|+++.+.+.++.++....        +. .++++...+...+     
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~-~~i~~~~~D~~~~-----  157 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQ-ERLQLIHASSLTA-----  157 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHH-HHEEEEESCHHHH-----
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhh-cCEEEEECCHHHH-----
Confidence            456  8999999999999999998866 59999999988777776654221        11 2345555443211     


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccchhHH--HHHHHHHHHhccCC
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL--LQLADHIVSYAKPG  176 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~--~~~l~~~~~~Lkpg  176 (225)
                                    ++.  ....||+|+++|++...  ...+++..+.|++.
T Consensus       158 --------------L~~--~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l  193 (258)
T 2oyr_A          158 --------------LTD--ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSL  193 (258)
T ss_dssp             --------------STT--CSSCCSEEEECCCCCCCCC-----HHHHHHHHH
T ss_pred             --------------HHh--CcccCCEEEEcCCCCCcccchHHHHHHHHHHHh
Confidence                          011  12369999999998542  12334444555443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.34  E-value=5.9e-06  Score=69.52  Aligned_cols=124  Identities=11%  Similarity=0.122  Sum_probs=79.3

Q ss_pred             hccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           55 LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++++.+|||+||++|.++..+++ .+...+.|+|+...+......   ..... ..+.......+..            
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~---~~~~~-~~iv~~~~~~di~------------  141 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH---MQTLG-WNIVKFKDKSNVF------------  141 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCBTT-GGGEEEECSCCTT------------
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc---ccccC-CceEEeecCceee------------
Confidence            456789999999999999999997 477789999997532100000   00000 0111111111111            


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-------HH--HHHHHHHHHhccCC-eEEEEeccC--CCcHHHHHHHHHhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-------PL--LQLADHIVSYAKPG-AVVGISGIL--SEQLPHIINRYSEFLE  201 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-------~~--~~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~~~  201 (225)
                               .+ ....+|+|+|+...+       ++  ..+++-+.++|+|| |.+++..+.  ..+..++...++..|.
T Consensus       142 ---------~l-~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~  211 (300)
T 3eld_A          142 ---------TM-PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFG  211 (300)
T ss_dssp             ---------TS-CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHC
T ss_pred             ---------ec-CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCC
Confidence                     00 456899999976543       22  23477778999999 999998787  7777888888887775


Q ss_pred             hhc
Q 041459          202 DIL  204 (225)
Q Consensus       202 ~~~  204 (225)
                      .+.
T Consensus       212 ~V~  214 (300)
T 3eld_A          212 GGI  214 (300)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            443

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.21  E-value=5.6e-06  Score=68.77  Aligned_cols=143  Identities=13%  Similarity=0.064  Sum_probs=78.7

Q ss_pred             CCCcEEEEcccccHHHHHHHh--------cCC-----CeEEEEeCCH---HHHH-----------HHHHHHHhcC-----
Q 041459           58 GGELFLDYGTGSGILGIAAIK--------FGA-----AMSVGVDIDP---QAIK-----------SAHQNAALNN-----  105 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~--------~~~-----~~v~~vDi~~---~~l~-----------~a~~~~~~~~-----  105 (225)
                      ++.+|||+|+|+|..++.+++        .+.     .+++++|..|   +.+.           .|+.++....     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            346999999999988876543        232     4799999887   4444           4555544311     


Q ss_pred             -----CCC--CcceEEEecCCCCCccccccccccccccccccccCCCC--CCceeEEEecc--ch-h---HHHHHHHHHH
Q 041459          106 -----IGP--KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE--TEKYDVVIANI--LL-N---PLLQLADHIV  170 (225)
Q Consensus       106 -----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvIi~~~--~~-~---~~~~~l~~~~  170 (225)
                           +..  ..+++..+|+..       .+            +....  ...||+|+.++  +- +   +..++++.+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~-------~l------------~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~  200 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINE-------LI------------SQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMA  200 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHH-------HG------------GGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHH
T ss_pred             hhheeccCCceEEEEEECcHHH-------HH------------hhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHH
Confidence                 111  123333333211       11            11101  13799999974  21 1   2467899999


Q ss_pred             HhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhccc-ccCCceEEEeeeecccc
Q 041459          171 SYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLS-EMDDWTCVSGTKKRAKE  223 (225)
Q Consensus       171 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~w~~~~~~k~~~~~  223 (225)
                      +.|+|||+++.-  ..  ...+++.+... |...... ..+.+..+.++|+....
T Consensus       201 ~~L~pGG~l~ty--sa--a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~~~~~  251 (257)
T 2qy6_A          201 RLARPGGTLATF--TS--AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQTEG  251 (257)
T ss_dssp             HHEEEEEEEEES--CC--BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC----
T ss_pred             HHcCCCcEEEEE--eC--CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEecCccc
Confidence            999999998752  22  12455555544 5433221 22345667777766544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.14  E-value=2.3e-06  Score=70.68  Aligned_cols=118  Identities=10%  Similarity=0.087  Sum_probs=66.5

Q ss_pred             hccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCC--Ccce-EEEecC-CCCCccccccc
Q 041459           55 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGP--KKMK-LHLVPD-RTFPASMNERV  129 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~  129 (225)
                      +++++.+|+|+||++|..+.++++. +...+.|.++....        ...+...  ..+. +.+..+ +.+.       
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--------~~~P~~~~~~Gv~~i~~~~G~Df~~-------  134 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--------HEEPMLMQSYGWNIVTMKSGVDVFY-------  134 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCGGG-------
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--------ccCCCcccCCCceEEEeeccCCccC-------
Confidence            4778999999999999999998875 23333344432210        0111110  0011 112222 1110       


Q ss_pred             cccccccccccccCCCCCCceeEEEeccch-------hHHH--HHHHHHHHhccCCe-EEEEeccCC--CcHHHHHHHHH
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILL-------NPLL--QLADHIVSYAKPGA-VVGISGILS--EQLPHIINRYS  197 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------~~~~--~~l~~~~~~LkpgG-~l~~~~~~~--~~~~~~~~~~~  197 (225)
                        +             ...++|+|+|+...       ++.+  ..++-+.++|+||| .+++-.+..  .+..++.+.++
T Consensus       135 --~-------------~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk  199 (269)
T 2px2_A          135 --K-------------PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQ  199 (269)
T ss_dssp             --S-------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHH
T ss_pred             --C-------------CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHH
Confidence              0             45579999997542       2221  24666778999999 888876663  33334445666


Q ss_pred             hhhhh
Q 041459          198 EFLED  202 (225)
Q Consensus       198 ~~~~~  202 (225)
                      ..|..
T Consensus       200 ~~F~~  204 (269)
T 2px2_A          200 RRFGG  204 (269)
T ss_dssp             HHHCC
T ss_pred             HHcCC
Confidence            55543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.09  E-value=2.8e-06  Score=71.28  Aligned_cols=101  Identities=11%  Similarity=0.139  Sum_probs=71.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .+..+||+.+|||.+++.+.+ +..+++.+|.++..++..++|+..    .+++.+...|+..       .+..+     
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~-------~L~~l-----  153 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVS-------KLNAL-----  153 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHH-------HHHHH-----
T ss_pred             cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHH-------HHHHh-----
Confidence            467799999999999999888 458899999999999999888754    1345555443211       01111     


Q ss_pred             cccccCCCCCCceeEEEeccchh---HHHHHHHHHHH--hccCCeEEEE
Q 041459          138 SHEIRGISETEKYDVVIANILLN---PLLQLADHIVS--YAKPGAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~--~LkpgG~l~~  181 (225)
                            ..+..+||+|+++|||+   .+..+++.+.+  .+.++|++++
T Consensus       154 ------~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          154 ------LPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             ------CSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             ------cCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence                  11345799999999996   45666655554  4678888776

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.06  E-value=8.4e-06  Score=68.88  Aligned_cols=57  Identities=28%  Similarity=0.370  Sum_probs=46.7

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      ++..++.....++..|||+|||+|++++.+++.+. +++|+|+++.+++.|++++...
T Consensus       224 l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          224 LAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            33444444445789999999999999999888864 6999999999999999998754

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.03  E-value=2.3e-05  Score=59.38  Aligned_cols=45  Identities=18%  Similarity=0.083  Sum_probs=34.6

Q ss_pred             HHHhhccCCCcEEEEccccc-HHHHHHHhcCCCeEEEEeCCHHHHH
Q 041459           51 LLQSLIKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGVDIDPQAIK   95 (225)
Q Consensus        51 ~L~~~~~~~~~vlDiGcGtG-~~~~~l~~~~~~~v~~vDi~~~~l~   95 (225)
                      .+.....++.+|||+|||+| ..+..+++...-.|+++|+++.+++
T Consensus        28 YI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           28 YIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             HHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            33334455789999999999 6999999733345999999997765

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.01  E-value=3e-05  Score=65.14  Aligned_cols=118  Identities=8%  Similarity=0.011  Sum_probs=68.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|+|+||++|.++.+++. .++.+|+|+|+...--+.-+ .....+..  .+.+... +...+            
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~--lV~~~~~~Dv~~l------------  156 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWN--IVTMKSGVDVFYR------------  156 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGG--GEEEECSCCTTSS------------
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCc--ceEEEeccCHhhC------------
Confidence            66788999999999999997665 57788999999763110000 00001111  1222211 11111            


Q ss_pred             cccccccccCCCCCCceeEEEeccch-------hHH--HHHHHHHHHhccCC-eEEEEeccCC--CcHHHHHHHHHhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL-------NPL--LQLADHIVSYAKPG-AVVGISGILS--EQLPHIINRYSEFL  200 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-------~~~--~~~l~~~~~~Lkpg-G~l~~~~~~~--~~~~~~~~~~~~~~  200 (225)
                                  +..++|+|+|+..-       +..  ...++-+.++|++| |-+|+-.+..  .+..+..+.++..|
T Consensus       157 ------------~~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~f  223 (321)
T 3lkz_A          157 ------------PSECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRY  223 (321)
T ss_dssp             ------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             ------------CCCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHh
Confidence                        34679999996541       111  23577778999999 8888854433  34434444455444

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.97  E-value=1.6e-05  Score=65.84  Aligned_cols=60  Identities=25%  Similarity=0.316  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      .++..++.....+|..|||.+||+|+.++.+.+.+ .+++|+|+++.+++.|++++..+++
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhccC
Confidence            34444554445678999999999999999988886 5699999999999999999876553

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.97  E-value=1.9e-05  Score=66.25  Aligned_cols=82  Identities=18%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++..++|.+||.|..+..+++. ..+++|+|.++.+++.|++ +..     +++.+...+...+        ...+..
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l--------~~~L~~   84 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHL--------KRHLAA   84 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGH--------HHHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchH--------HHHHHH
Confidence            457889999999999999998887 5689999999999999987 532     2355554433221        111110


Q ss_pred             cccccccCCCCCCceeEEEeccchhH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                      .         ...++|.|+++..+..
T Consensus        85 ~---------g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           85 L---------GVERVDGILADLGVSS  101 (285)
T ss_dssp             T---------TCSCEEEEEEECSCCH
T ss_pred             c---------CCCCcCEEEeCCcccc
Confidence            0         2357999999877654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.93  E-value=0.00011  Score=60.05  Aligned_cols=118  Identities=12%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             hccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  132 (225)
                      .++++.+|+|+||++|.++.+++. .++.+|+|+|+.+.-.+.-+ .....+.+  .+.+... |....           
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn--~v~fk~gvDv~~~-----------  140 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWN--IVKLMSGKDVFYL-----------  140 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTT--SEEEECSCCGGGC-----------
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcC--ceEEEeccceeec-----------
Confidence            367888999999999999997665 57788999999763210000 00111222  1333322 11111           


Q ss_pred             ccccccccccCCCCCCceeEEEeccch-------hHH--HHHHHHHHHhccCCeEEEEeccCCCc--HHHHHHHHHhhh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILL-------NPL--LQLADHIVSYAKPGAVVGISGILSEQ--LPHIINRYSEFL  200 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~-------~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~  200 (225)
                                   +..++|+|+|+..-       +..  ...++-+.++|++ |-+|+-.+....  ..+..+.++..|
T Consensus       141 -------------~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~f  205 (267)
T 3p8z_A          141 -------------PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKH  205 (267)
T ss_dssp             -------------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             -------------CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHh
Confidence                         45779999996432       111  2357777899999 777775444333  334444445444

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.86  E-value=6.8e-05  Score=65.68  Aligned_cols=107  Identities=13%  Similarity=-0.039  Sum_probs=64.2

Q ss_pred             CCcEEEEcccccHHHHHHHhc------------------CCCeEEEEeCC-----------HHHHHHHHHHHHhcCCCCC
Q 041459           59 GELFLDYGTGSGILGIAAIKF------------------GAAMSVGVDID-----------PQAIKSAHQNAALNNIGPK  109 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~------------------~~~~v~~vDi~-----------~~~l~~a~~~~~~~~~~~~  109 (225)
                      ..+|+|+||++|..++.+...                  +.-+++..|+-           +...+.+++   ..+....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            468999999999888765422                  23457888876           444333322   1221101


Q ss_pred             cceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHH--------------------------
Q 041459          110 KMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLL--------------------------  163 (225)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~--------------------------  163 (225)
                       ..+..+.+..+.                   ..+.+.+++|+|+++..++++.                          
T Consensus       130 -~~f~~gvpgSFy-------------------~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp  189 (384)
T 2efj_A          130 -SCLIGAMPGSFY-------------------SRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASR  189 (384)
T ss_dssp             -SEEEEECCSCTT-------------------SCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSC
T ss_pred             -ceEEEecchhhh-------------------hccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCC
Confidence             123333333321                   1223788999999988876521                          


Q ss_pred             ----------------HHHHHHHHhccCCeEEEEeccCCCc
Q 041459          164 ----------------QLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       164 ----------------~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                      .+++...+.|+|||.++++..+..+
T Consensus       190 ~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~  230 (384)
T 2efj_A          190 PPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKED  230 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCC
Confidence                            1255558999999999997665443

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.86  E-value=4.7e-05  Score=66.51  Aligned_cols=41  Identities=12%  Similarity=0.058  Sum_probs=32.4

Q ss_pred             CCCceeEEEeccchhHH-----------------------------------------HHHHHHHHHhccCCeEEEEecc
Q 041459          146 ETEKYDVVIANILLNPL-----------------------------------------LQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~~~-----------------------------------------~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      +.+++|+|+++..++++                                         ..+++..++.|+|||.++++..
T Consensus       147 P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          147 PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            68899999998776652                                         2347778999999999999755


Q ss_pred             CC
Q 041459          185 LS  186 (225)
Q Consensus       185 ~~  186 (225)
                      +.
T Consensus       227 gr  228 (374)
T 3b5i_A          227 GR  228 (374)
T ss_dssp             EC
T ss_pred             cC
Confidence            44

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.84  E-value=0.0001  Score=63.26  Aligned_cols=43  Identities=26%  Similarity=0.327  Sum_probs=38.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHH
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAH   98 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~   98 (225)
                      +++|..++|..||.|..+..+++.  +..+++|+|.++.+++.|+
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            467899999999999999998864  4678999999999999884

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.71  E-value=0.00044  Score=60.10  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP   91 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~   91 (225)
                      +++|++++|+||++|..+..+++.+ .+|+|||..+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~  243 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGP  243 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhh
Confidence            5689999999999999999999886 4799999865

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.60  E-value=0.00032  Score=58.97  Aligned_cols=106  Identities=10%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             ccCCCcEEEEcc------cccHHHHHHHhc-CC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGT------GSGILGIAAIKF-GA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGc------GtG~~~~~l~~~-~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      +..+++|||+|+      .+|..  .+.+. +. ..++++|+.+-.           ... +  ....+|....      
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sda-~--~~IqGD~~~~------  164 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SDA-D--STLIGDCATV------  164 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CSS-S--EEEESCGGGE------
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cCC-C--eEEEcccccc------
Confidence            456899999997      56773  33333 33 389999998822           111 1  1233332211      


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchhH-------------HH-HHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-------------LL-QLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                                       ....+||+|++++....             +. .+++-+.+.|+|||.+++-.+..+..+.+.
T Consensus       165 -----------------~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~  227 (344)
T 3r24_A          165 -----------------HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLY  227 (344)
T ss_dssp             -----------------EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHH
T ss_pred             -----------------ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHH
Confidence                             13578999999754311             33 345666788999999999888776644444


Q ss_pred             HHHHhhhh
Q 041459          194 NRYSEFLE  201 (225)
Q Consensus       194 ~~~~~~~~  201 (225)
                      + +++.|.
T Consensus       228 ~-lrk~F~  234 (344)
T 3r24_A          228 K-LMGHFS  234 (344)
T ss_dssp             H-HHTTEE
T ss_pred             H-HHhhCC
Confidence            4 334443

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.37  E-value=0.00011  Score=63.83  Aligned_cols=107  Identities=11%  Similarity=0.024  Sum_probs=67.0

Q ss_pred             CcEEEEcccccHHHHHHHhc-----------------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           60 ELFLDYGTGSGILGIAAIKF-----------------GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~-----------------~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      .+|+|+||++|..++.+...                 +..+++..|+-.+....+-+.+.... ......+..+.+..+.
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESCSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchhhh
Confidence            57999999999766543221                 23568899988888877766554311 1001122222222221


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccchhHH------------------------------------HHHH
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPL------------------------------------LQLA  166 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~------------------------------------~~~l  166 (225)
                                         .++.+.+++|+++++..++++                                    ..++
T Consensus       132 -------------------~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL  192 (359)
T 1m6e_X          132 -------------------GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFL  192 (359)
T ss_dssp             -------------------SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHH
T ss_pred             -------------------hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence                               122378899999998776542                                    2347


Q ss_pred             HHHHHhccCCeEEEEeccCC
Q 041459          167 DHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       167 ~~~~~~LkpgG~l~~~~~~~  186 (225)
                      +..++.|+|||.++++..+.
T Consensus       193 ~~Ra~EL~pGG~mvl~~~gr  212 (359)
T 1m6e_X          193 RCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             HHHHHHBCTTCEEEEEEEEC
T ss_pred             HHHHHHhcCCceEEEEEecC
Confidence            77899999999999865543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.17  E-value=0.0021  Score=54.96  Aligned_cols=44  Identities=25%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +.+++|++||.|.+++.+.+.|...+.++|+++.+++..+.|..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            57899999999999999988898889999999999999888864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.14  E-value=0.00072  Score=57.70  Aligned_cols=60  Identities=22%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      .++..++.....+|..|||.+||+|+.+..+.+.+ .+++|+|+++...+.+++++...+.
T Consensus       240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhccc
Confidence            44444554445689999999999999999988886 5699999999999999988765543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.11  E-value=0.0026  Score=55.46  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=38.4

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+++|++||.|.+++.+.+.|...+.++|+++.+++..+.|..
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~   45 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP   45 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC
Confidence            5799999999999999888888888999999999988887753

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.98  E-value=0.0012  Score=56.26  Aligned_cols=58  Identities=24%  Similarity=0.290  Sum_probs=44.7

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCH---HHHHHHHHHHHhcC
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDP---QAIKSAHQNAALNN  105 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~---~~l~~a~~~~~~~~  105 (225)
                      ++..++.....+|..|||.+||+|+.+..+.+.+ .+++|+|+++   ..++.+++++...+
T Consensus       231 l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          231 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3344444445678999999999999999988886 5699999999   99999998886554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.89  E-value=0.00084  Score=57.79  Aligned_cols=44  Identities=18%  Similarity=0.102  Sum_probs=38.7

Q ss_pred             CCcEEEEcccccHHHHHHHhcC--CCeEEEEeCCHHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFG--AAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~--~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      ..+++|++||.|.+++.+.+.|  ...++++|+++.+++..+.|..
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~   47 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence            3579999999999999988887  4579999999999999998864

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.71  E-value=0.02  Score=49.42  Aligned_cols=55  Identities=11%  Similarity=-0.053  Sum_probs=43.7

Q ss_pred             CCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           59 GELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      +..|||+|.|.|.++..+++. ...+++++|+++..+...+... .    .+++.+...|.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~----~~~l~ii~~D~  114 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E----GSPLQILKRDP  114 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T----TSSCEEECSCT
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c----CCCEEEEECCc
Confidence            589999999999999998875 4578999999999998887765 1    13466666555

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.64  E-value=0.011  Score=48.77  Aligned_cols=55  Identities=15%  Similarity=0.208  Sum_probs=40.6

Q ss_pred             CCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhh
Q 041459          146 ETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFL  200 (225)
Q Consensus       146 ~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  200 (225)
                      +..++|+++++.-. ......++.+...|+|||++++-++.....+...+.+.+++
T Consensus       179 ~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~  234 (257)
T 3tos_A          179 PQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVL  234 (257)
T ss_dssp             TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHT
T ss_pred             CCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHH
Confidence            35579999997754 45677899999999999999998765434445555565554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.60  E-value=0.01  Score=50.25  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ++|+|++||.|.++.-+.+.|..-+.++|+++.+.+.-+.|.
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~   42 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH   42 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence            469999999999999888888888899999999988887774

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.43  E-value=0.0063  Score=52.44  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=64.6

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++.    +..    .........+    .+.+... 
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~----~~~~~~~-  254 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT----HVINSKTQDP----VAAIKEI-  254 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS----EEEETTTSCH----HHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC----EEecCCccCH----HHHHHHh-
Confidence            56789999999876 677777666 5776899999999988888643    321    1111111111    0111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ..+.+|+|+.....   ...++.+.+.|+++|.+++...
T Consensus       255 ------------~~gg~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          255 ------------TDGGVNFALESTGS---PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             ------------TTSCEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             ------------cCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEeCC
Confidence                        12379999875543   2346778889999999988544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.27  E-value=0.028  Score=47.55  Aligned_cols=150  Identities=11%  Similarity=0.027  Sum_probs=82.8

Q ss_pred             eeecCceEEeeCCCCC-CCCcceeEEeccccee-cC--CCCch-HHHHHHHH-H-hhccCCCcEEEEccc--ccHHHHHH
Q 041459            6 VEVTKGLWIVPEWSTP-PDVQATNIILNPGLAF-GT--GEHAT-TKLCLLLL-Q-SLIKGGELFLDYGTG--SGILGIAA   76 (225)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f-~~--~~~~~-~~~~~~~L-~-~~~~~~~~vlDiGcG--tG~~~~~l   76 (225)
                      |.++.+......|.++ .......+.+++++.+ ..  ..-+. ..-....| . ..+++|++||-.|++  .|..+..+
T Consensus        90 ~~vGdrV~~~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~  169 (336)
T 4b7c_A           90 FQAGDYVNGALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQI  169 (336)
T ss_dssp             CCTTCEEEEECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHH
T ss_pred             CCCCCEEeccCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            4455555555566664 2233356667766532 11  11111 11122233 2 236678999999983  36666666


Q ss_pred             Hh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEe
Q 041459           77 IK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIA  155 (225)
Q Consensus        77 ~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~  155 (225)
                      ++ .|+ ++++++.++..++.+.+.   .+..    .........+    .+.+...             ..+.+|+++.
T Consensus       170 a~~~Ga-~Vi~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~----~~~~~~~-------------~~~~~d~vi~  224 (336)
T 4b7c_A          170 ARLKGC-RVVGIAGGAEKCRFLVEE---LGFD----GAIDYKNEDL----AAGLKRE-------------CPKGIDVFFD  224 (336)
T ss_dssp             HHHTTC-EEEEEESSHHHHHHHHHT---TCCS----EEEETTTSCH----HHHHHHH-------------CTTCEEEEEE
T ss_pred             HHHCCC-EEEEEeCCHHHHHHHHHH---cCCC----EEEECCCHHH----HHHHHHh-------------cCCCceEEEE
Confidence            65 455 899999999887776322   2321    1111111111    1111111             2357999998


Q ss_pred             ccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          156 NILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       156 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      +..-    ..+..+.+.|+++|.++..+.
T Consensus       225 ~~g~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          225 NVGG----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             SSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             CCCc----chHHHHHHHHhhCCEEEEEee
Confidence            6653    357788899999999987543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.25  E-value=0.0078  Score=52.58  Aligned_cols=105  Identities=17%  Similarity=0.137  Sum_probs=63.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||=+|+|. |.+++.+++ .|+.+|+++|.++.-++.+++.    +..    .+.......+    .+.+..  
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~----~~~i~~--  276 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD----HVIDPTKENF----VEAVLD--  276 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS----EEECTTTSCH----HHHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC----EEEcCCCCCH----HHHHHH--
Confidence            56789999999865 666666665 5776899999999988888643    321    1111111111    111111  


Q ss_pred             cccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ......+|+|+-...-.  ....+++.+.+.++++|.+++.+.
T Consensus       277 ----------~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          277 ----------YTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             ----------HTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             ----------HhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence                      11345799998765443  233333434455599999988544

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.10  E-value=0.0076  Score=51.50  Aligned_cols=101  Identities=19%  Similarity=0.205  Sum_probs=63.6

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++.    +..    .........+    .+.+.   
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~----~~~v~---  228 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT----DIINYKNGDI----VEQIL---  228 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC----EEECGGGSCH----HHHHH---
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc----eEEcCCCcCH----HHHHH---
Confidence            56899999999876 677777666 4666899999999888887653    322    1111111111    01111   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                               .......+|+|+-.....   ..+..+.++|+++|.++...
T Consensus       229 ---------~~t~g~g~D~v~d~~g~~---~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          229 ---------KATDGKGVDKVVIAGGDV---HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             ---------HHTTTCCEEEEEECSSCT---THHHHHHHHEEEEEEEEECC
T ss_pred             ---------HHcCCCCCCEEEECCCCh---HHHHHHHHHHhcCCEEEEec
Confidence                     111345799998654331   34667778999999998754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.02  E-value=0.0055  Score=52.40  Aligned_cols=45  Identities=18%  Similarity=0.118  Sum_probs=38.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCC--CeE-EEEeCCHHHHHHHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGA--AMS-VGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~--~~v-~~vDi~~~~l~~a~~~~~  102 (225)
                      ...+++|++||.|.++..+.+.|.  ..+ .++|+++.+.+..+.|..
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~   56 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK   56 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC
Confidence            456899999999999998888774  567 799999999998888864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.77  E-value=0.038  Score=47.96  Aligned_cols=105  Identities=19%  Similarity=0.306  Sum_probs=65.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++    .+.     .........+   +.+.+... 
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-----~~i~~~~~~~---~~~~~~~~-  249 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-----ETIDLRNSAP---LRDQIDQI-  249 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-----EEEETTSSSC---HHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-----cEEcCCCcch---HHHHHHHH-
Confidence            56789999999876 777777776 577689999999988877753    231     1111111110   00111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 .....+|+|+-...-..           ....+..+.++|+++|++++.+.
T Consensus       250 -----------~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          250 -----------LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             -----------HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             -----------hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence                       12346999987554321           12357778899999999987544

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.73  E-value=0.032  Score=48.04  Aligned_cols=104  Identities=22%  Similarity=0.226  Sum_probs=64.2

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-.|+|. |.+++.+++ .|+.+|+++|.++..++.+++.    +..    .........+    .+.+... 
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~----~~~i~~~-  246 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT----ATVDPSAGDV----VEAIAGP-  246 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS----EEECTTSSCH----HHHHHST-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC----EEECCCCcCH----HHHHHhh-
Confidence            56899999999875 666776665 5777899999999988877653    322    1111111110    0111110 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ... ..+.+|+|+-....   ...+..+.++|++||.+++.+.
T Consensus       247 --------~~~-~~gg~Dvvid~~G~---~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          247 --------VGL-VPGGVDVVIECAGV---AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             --------TSS-STTCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             --------hhc-cCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEec
Confidence                    001 23379999875432   2356678889999999988544

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.73  E-value=0.14  Score=43.69  Aligned_cols=106  Identities=18%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-.|+|. |.+++.+++ .|+..|+++|.++..++.+++. ....     +.... +. ....++.+.+    
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~-----~~~~~-~~-~~~~~~~~~v----  244 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEV-----VTHKV-ER-LSAEESAKKI----  244 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTC-----EEEEC-CS-CCHHHHHHHH----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhc-----ccccc-cc-cchHHHHHHH----
Confidence            56789999999875 677777666 5776799999999999888764 2111     11111 10 0000000111    


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ........+|+++-...-.   ..+..+.++|+++|.+++.+.
T Consensus       245 --------~~~t~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          245 --------VESFGGIEPAVALECTGVE---SSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             --------HHHTSSCCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECCC
T ss_pred             --------HHHhCCCCCCEEEECCCCh---HHHHHHHHHhcCCCEEEEEcc
Confidence                    1111355799998754432   346677889999999998644

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.72  E-value=0.034  Score=46.93  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=60.2

Q ss_pred             ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++++||-.|++  .|..+..+++ .|. +++++|.++..++.+++    .+..   ..+...+...+    .+.+...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~----~~~~~~~  210 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSL----EEALKKA  210 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSCSCH----HHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc---EEEecCCHHHH----HHHHHHH
Confidence            5678999999983  4555555554 565 79999999988877732    2321   11111110111    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                   ..+.+|+++.+...    ..+..+.++|+++|.+++.+.
T Consensus       211 -------------~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          211 -------------SPDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             -------------CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             -------------hCCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEec
Confidence                         12479999987653    246778899999999987543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.68  E-value=0.075  Score=45.34  Aligned_cols=104  Identities=18%  Similarity=0.230  Sum_probs=63.3

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+++++|.++..++.+++    .+..    .......... .   +....+ 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~-~---~~~~~i-  235 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD----LVLQISKESP-Q---EIARKV-  235 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS----EEEECSSCCH-H---HHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEEcCccccc-c---hHHHHH-
Confidence            56789999999875 677777666 566689999999988887763    2322    1111110000 0   000000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ..... ..+|+|+-.....   ..+..+.++|+++|.++..+.
T Consensus       236 --------~~~~~-~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          236 --------EGQLG-CKPEVTIECTGAE---ASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             --------HHHHT-SCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred             --------HHHhC-CCCCEEEECCCCh---HHHHHHHHHhcCCCEEEEEec
Confidence                    00012 5699998755432   345677889999999988554

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.66  E-value=0.018  Score=48.53  Aligned_cols=44  Identities=9%  Similarity=0.018  Sum_probs=37.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCe--EEEEeCCHHHHHHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAM--SVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~--v~~vDi~~~~l~~a~~~~  101 (225)
                      .+.+++|++||.|.++..+.+.|...  +.++|+++.+.+..+.|.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC
Confidence            46699999999999999888888765  799999999888777664

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.34  E-value=0.061  Score=46.30  Aligned_cols=103  Identities=18%  Similarity=0.291  Sum_probs=63.7

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|+.+|+++|.++.-++.+++    .+..    .........  .++.+.+... 
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~--~~~~~~i~~~-  259 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN----EFVNPKDHD--KPIQEVIVDL-  259 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC----EEECGGGCS--SCHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----EEEccccCc--hhHHHHHHHh-
Confidence            56789999999875 667776665 577789999999988887753    3322    111111000  0111111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (225)
                                  ..+.+|+++-....   ...+..+.+.|++| |++++...
T Consensus       260 ------------~~gg~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          260 ------------TDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             ------------TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ------------cCCCCCEEEECCCC---HHHHHHHHHHhhccCCEEEEEcc
Confidence                        22379999875443   23467788899996 99887544

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.23  E-value=0.022  Score=48.25  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=63.7

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++|++|+=.|+|. |.+++.+++ .|...++++|.++.-++.|++    .|..    ..........    .+...   
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~----~~i~~~~~~~----~~~~~---  222 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM----QTFNSSEMSA----PQMQS---  222 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS----EEEETTTSCH----HHHHH---
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe----EEEeCCCCCH----HHHHH---
Confidence            56789999999876 455666555 578888999999988888764    3322    1111111111    01111   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               .+.....+|+|+.....   ...++...++|+++|.+++....
T Consensus       223 ---------~~~~~~g~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          223 ---------VLRELRFNQLILETAGV---PQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             ---------HHGGGCSSEEEEECSCS---HHHHHHHHHHCCTTCEEEECCCC
T ss_pred             ---------hhcccCCcccccccccc---cchhhhhhheecCCeEEEEEecc
Confidence                     11134568888764432   23466777899999999986554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.18  E-value=0.08  Score=45.42  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++    .+.+    .........  .++.+.+... 
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~--~~~~~~i~~~-  257 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT----ECLNPKDYD--KPIYEVICEK-  257 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----EEEeccccc--chHHHHHHHH-
Confidence            56789999999875 666666665 577689999999988887763    2322    111111000  0000111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (225)
                                  ..+.+|+|+-....   ...+..+.++|+++ |.++....
T Consensus       258 ------------t~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          258 ------------TNGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             ------------TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ------------hCCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEcc
Confidence                        12379999875433   23466788899999 99987543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.17  E-value=0.021  Score=48.82  Aligned_cols=43  Identities=23%  Similarity=0.206  Sum_probs=36.7

Q ss_pred             CcEEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+++|++||.|.++..+.+.|.  ..+.++|+++.+.+..+.|..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~   48 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP   48 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC
Confidence            4799999999999998877775  568999999999988887754

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.15  E-value=0.042  Score=48.24  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=41.3

Q ss_pred             cCCCcEEEEcccccHHHHHHH-h-cC-CCeEEEEeCCHHHHHHHHHHHHh
Q 041459           57 KGGELFLDYGTGSGILGIAAI-K-FG-AAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~-~-~~-~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      +++..++|+||+.|..+..++ + .+ ..+|+++|.+|...+..++|+..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            578899999999999999876 4 34 37899999999999999999987

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.14  E-value=0.077  Score=45.53  Aligned_cols=103  Identities=15%  Similarity=0.256  Sum_probs=62.8

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++    .+..    .........  .++.+.+... 
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~--~~~~~~~~~~-  258 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT----DFVNPNDHS--EPISQVLSKM-  258 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC----EEECGGGCS--SCHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc----eEEeccccc--hhHHHHHHHH-
Confidence            56789999999865 666666665 566689999999988887763    2322    111111000  0000111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (225)
                                  ..+.+|+|+.+...   ...+..+.++|+++ |.++....
T Consensus       259 ------------~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          259 ------------TNGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             ------------HTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ------------hCCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEcC
Confidence                        12379999875543   23466788899999 99987544

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.11  E-value=0.097  Score=44.84  Aligned_cols=103  Identities=19%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+++++|.++..++.+++.    +..    .........  .++.+.+... 
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~--~~~~~~v~~~-  256 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT----ECINPQDFS--KPIQEVLIEM-  256 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc----eEecccccc--ccHHHHHHHH-
Confidence            56789999999865 666666665 5776899999999888887642    322    111111000  0000111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (225)
                                  ..+.+|+|+.+...   ...+..+.++|+++ |.++....
T Consensus       257 ------------~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          257 ------------TDGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             ------------TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ------------hCCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEec
Confidence                        12379999875543   23466788899999 99987543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.08  E-value=0.0098  Score=51.12  Aligned_cols=100  Identities=15%  Similarity=0.192  Sum_probs=63.0

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-.|+|. |.+++.+++. |+ +++++|.++..++.+++.    +..   . ....+...+    .+.+..  
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~-vi~~~~~~~----~~~v~~--  251 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD---H-GINRLEEDW----VERVYA--  251 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---E-EEETTTSCH----HHHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC---E-EEcCCcccH----HHHHHH--
Confidence            56789999999775 6666666664 55 799999999888887642    322   1 111111111    011111  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ......+|+|+.+..-    ..+..+.++|+++|.+++.+.
T Consensus       252 ----------~~~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          252 ----------LTGDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             ----------HHTTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECC
T ss_pred             ----------HhCCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEec
Confidence                      1134579999876542    345677789999999987544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.02  E-value=0.017  Score=50.16  Aligned_cols=105  Identities=17%  Similarity=0.361  Sum_probs=65.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|+.+|+++|.++..++.+++    .+.  +  .+...+.+.+    .+.+... 
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa--~--~i~~~~~~~~----~~~v~~~-  249 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF--E--IADLSLDTPL----HEQIAAL-  249 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--E--EEETTSSSCH----HHHHHHH-
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC--c--EEccCCcchH----HHHHHHH-
Confidence            56789999999876 777777776 577689999999998888864    232  1  1111110100    0111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH------------HHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 .....+|+|+-......            ....++.+.++|+++|.+++.+.
T Consensus       250 -----------t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          250 -----------LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             -----------HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             -----------hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence                       12346999987544221            12357788899999999987553

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.91  E-value=0.084  Score=45.33  Aligned_cols=103  Identities=16%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|+.+|+++|.++..++.+++    .+..    .........  .++.+.+... 
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~--~~~~~~v~~~-  261 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT----DCLNPRELD--KPVQDVITEL-  261 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc----EEEcccccc--chHHHHHHHH-
Confidence            56789999999875 666666666 566689999999988887753    2322    111111000  0000111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (225)
                                  ..+.+|+|+-....   ...+..+.++|+++ |.+++...
T Consensus       262 ------------~~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          262 ------------TAGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             ------------HTSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ------------hCCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence                        12379999875433   23466788899999 99987543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.89  E-value=0.012  Score=62.54  Aligned_cols=102  Identities=14%  Similarity=0.077  Sum_probs=49.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHh-cC-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIK-FG-----AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~-~~-----~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      ++..+|||+|.|+|..+..+.. .+     ..+|+..|+++...+.|++++....     +.....+....        .
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-----i~~~~~d~~~~--------~ 1305 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-----VTQGQWDPANP--------A 1305 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-----EEEECCCSSCC--------C
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc-----ccccccccccc--------c
Confidence            3467999999999976554332 21     3479999999888777776654321     11110011000        0


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchh---HHHHHHHHHHHhccCCeEEEEecc
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      +.             ....||+|++...++   .....+.++.++|||||.+++...
T Consensus      1306 ~~-------------~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1306 PG-------------SLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             C------------------CCEEEEECC--------------------CCEEEEEEC
T ss_pred             cC-------------CCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            00             235699999977765   356678899999999999888543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.88  E-value=0.12  Score=44.37  Aligned_cols=103  Identities=22%  Similarity=0.260  Sum_probs=62.4

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++    .+..    .........  .++.+.+... 
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~--~~~~~~~~~~-  257 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT----ECVNPQDYK--KPIQEVLTEM-  257 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCS--SCHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc----eEecccccc--hhHHHHHHHH-
Confidence            56789999999875 666666665 566689999999988887753    2322    111111000  0000111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  184 (225)
                                  ..+.+|+|+.+...   ...+..+.++|+++ |.++....
T Consensus       258 ------------~~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          258 ------------SNGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             ------------TTSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             ------------hCCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEecc
Confidence                        12379999875543   23466778899999 99887543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.77  E-value=0.017  Score=48.83  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+ | .|..+..+++ .|. ++++++.++..++.+++    .+..    .........+    .+.+.. 
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~~~~~~~~~~----~~~~~~-  211 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE----YLINASKEDI----LRQVLK-  211 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTTSCH----HHHHHH-
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----EEEeCCCchH----HHHHHH-
Confidence            457899999984 3 3666666665 455 79999999988887754    2321    1111111111    011111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                 ......+|+++.+...    ..+..+.++|+++|.++..+
T Consensus       212 -----------~~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          212 -----------FTNGKGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             -----------HTTTSCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             -----------HhCCCCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence                       1134579999986653    34667778999999998753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.74  E-value=0.1  Score=44.13  Aligned_cols=99  Identities=15%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-.|+|. |.+++.+++ .|. +++++|.+++.++.+++    .+..    .........+    .+.+..  
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~~----~~~~~~--  228 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE----VAVNARDTDP----AAWLQK--  228 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS----EEEETTTSCH----HHHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC----EEEeCCCcCH----HHHHHH--
Confidence            56789999999976 777777776 455 89999999998887764    2322    1111111111    011100  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ..+.+|+++.+..-   ...++.+.+.|+++|.++..+.
T Consensus       229 ------------~~g~~d~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          229 ------------EIGGAHGVLVTAVS---PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             ------------HHSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             ------------hCCCCCEEEEeCCC---HHHHHHHHHHhccCCEEEEeCC
Confidence                        12368998865432   2456678889999999988544

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.72  E-value=0.015  Score=49.02  Aligned_cols=100  Identities=21%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             ccCCCcEEEEc-cc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYG-TG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiG-cG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.| +| .|..+..+++ .|+ ++++++.++..++.+++.    +..   . ........+    .+.+.. 
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~---~-~~~~~~~~~----~~~~~~-  203 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW---E-TIDYSHEDV----AKRVLE-  203 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---E-EEETTTSCH----HHHHHH-
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC---E-EEeCCCccH----HHHHHH-
Confidence            55789999988 34 3666666665 465 799999999888877642    321   1 111111111    011111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 ......+|+++.+...    ..+..+.++|+++|.++....
T Consensus       204 -----------~~~~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          204 -----------LTDGKKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             -----------HTTTCCEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             -----------HhCCCCceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence                       1134579999986554    345677889999999988544

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.49  E-value=0.021  Score=48.57  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=65.6

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++|+-.|+|. |.+++.+++ .+..+++++|.+++-++.+++    .+..    .....+. .+    .+.+...
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~----~~i~~~~-~~----~~~v~~~  234 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD----AAVKSGA-GA----ADAIREL  234 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS----EEEECST-TH----HHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----EEEcCCC-cH----HHHHHHH
Confidence            356789999999876 677777776 457889999999998888764    3322    1111111 11    1111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  .....+|+++-...-.   ..++.+.++|+++|.+++...
T Consensus       235 ------------t~g~g~d~v~d~~G~~---~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          235 ------------TGGQGATAVFDFVGAQ---STIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             ------------HGGGCEEEEEESSCCH---HHHHHHHHHEEEEEEEEECSC
T ss_pred             ------------hCCCCCeEEEECCCCH---HHHHHHHHHHhcCCEEEEECC
Confidence                        1234799998754432   356778889999999988544

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.47  E-value=0.01  Score=46.17  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=58.7

Q ss_pred             ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++++|+..|++  .|.....+++ .|. +++++|.+++.++.+++    .+..   . ..  +....  +..+.....
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~-~~--d~~~~--~~~~~~~~~  102 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE---Y-VG--DSRSV--DFADEILEL  102 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS---E-EE--ETTCS--THHHHHHHH
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---E-Ee--eCCcH--HHHHHHHHH
Confidence            5578999999853  3555554443 564 79999999887766542    2321   1 11  11110  000111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  .....+|+++.+...    ..+..+.+.|+++|.++..+.
T Consensus       103 ------------~~~~~~D~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          103 ------------TDGYGVDVVLNSLAG----EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             ------------TTTCCEEEEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred             ------------hCCCCCeEEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence                        023469999987642    456778889999999987543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.46  E-value=0.02  Score=49.56  Aligned_cols=105  Identities=14%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-.|+|. |.+++.+++ .|+.++++++.+++.++.+++    .+..    .+..... .-..++.+.+.   
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~-~~~~~~~~~v~---  260 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD----LTLNRRE-TSVEERRKAIM---  260 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS----EEEETTT-SCHHHHHHHHH---
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc----EEEeccc-cCcchHHHHHH---
Confidence            55789999999764 666666666 465689999999988887763    2322    1111110 00000001111   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               .......+|+|+-+....   ..+..+.++|+++|.++....
T Consensus       261 ---------~~~~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          261 ---------DITHGRGADFILEATGDS---RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             ---------HHTTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             ---------HHhCCCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence                     111234699998765432   235677789999999987544

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.45  E-value=0.052  Score=46.61  Aligned_cols=96  Identities=10%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             CCCcEEEEc-ccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYG-TGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiG-cGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +|++||=.| +|. |.+++.+++. +..+++++|.++.-++.+++    .+.+    .+... .+.+    .+.+     
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad----~vi~~-~~~~----~~~v-----  232 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH----HVIDH-SKPL----AAEV-----  232 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS----EEECT-TSCH----HHHH-----
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeC-CCCH----HHHH-----
Confidence            578899998 554 7778888875 67789999999988888764    3322    11111 1111    0111     


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                             ... ..+.+|+++.+..-   ...++.+.++|+++|.++..
T Consensus       233 -------~~~-~~~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          233 -------AAL-GLGAPAFVFSTTHT---DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             -------HTT-CSCCEEEEEECSCH---HHHHHHHHHHSCTTCEEEEC
T ss_pred             -------HHh-cCCCceEEEECCCc---hhhHHHHHHHhcCCCEEEEE
Confidence                   111 34579999875432   23567788899999999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.42  E-value=0.016  Score=49.22  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=61.7

Q ss_pred             ccCCCcEEEEcccc--cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGS--GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGt--G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+|+  |..+..+++ .|+ +++++|.++..++.+++.    +..   . ........+    .+.+.. 
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~---~-~~~~~~~~~----~~~~~~-  207 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA---Y-VIDTSTAPL----YETVME-  207 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---E-EEETTTSCH----HHHHHH-
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc---E-EEeCCcccH----HHHHHH-
Confidence            56789999999874  666666665 465 799999999888887652    321   1 111111111    011111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 ......+|+++.+..-...    ....++|+++|.++..+.
T Consensus       208 -----------~~~~~g~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          208 -----------LTNGIGADAAIDSIGGPDG----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             -----------HTTTSCEEEEEESSCHHHH----HHHHHTEEEEEEEEECCC
T ss_pred             -----------HhCCCCCcEEEECCCChhH----HHHHHHhcCCCEEEEEee
Confidence                       1134579999986654433    234479999999988654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.39  E-value=0.14  Score=42.82  Aligned_cols=91  Identities=14%  Similarity=0.127  Sum_probs=57.8

Q ss_pred             cEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           61 LFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        61 ~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +||=.|+ | .|.+++.+++ .|+ ++++++.+++-++.+++.    +.+   ..+...+...                 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~-----------------  203 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GAN---RILSRDEFAE-----------------  203 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCS---EEEEGGGSSC-----------------
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC---EEEecCCHHH-----------------
Confidence            4888887 3 3777777776 465 799999999988888652    322   1111111000                 


Q ss_pred             cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                         ++.+ ....+|+++-+..-    ..++.+.++|+++|.++....
T Consensus       204 ---~~~~-~~~~~d~v~d~~g~----~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          204 ---SRPL-EKQLWAGAIDTVGD----KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ---CCSS-CCCCEEEEEESSCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---HHhh-cCCCccEEEECCCc----HHHHHHHHHHhcCCEEEEEec
Confidence               0011 23579998865432    267788899999999987544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.38  E-value=0.074  Score=45.18  Aligned_cols=94  Identities=13%  Similarity=0.137  Sum_probs=62.1

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++||-.|+|. |.+++.+++ .|. +++++|.++..++.+++    .+..  .  .. .+.+.+           
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~--~--v~-~~~~~~-----------  231 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK--H--FY-TDPKQC-----------  231 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS--E--EE-SSGGGC-----------
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC--e--ec-CCHHHH-----------
Confidence            356799999999875 677777666 455 79999999988887764    3422  1  11 111111           


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                    ...+|+|+-...-.   ..+..+.+.|+++|.+++.+...
T Consensus       232 --------------~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          232 --------------KEELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             --------------CSCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCCCC
T ss_pred             --------------hcCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECCCC
Confidence                          12799998754322   13557778999999999865433

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.18  E-value=0.24  Score=42.01  Aligned_cols=101  Identities=14%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             ccCC--CcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           56 IKGG--ELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        56 ~~~~--~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      ++++  ++||-.|++  .|..+..+++ .|..++++++.++..++.+++.   .+..   ..+. .....+    .+.+.
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~d-~~~~~~----~~~~~  224 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAIN-YKKDNV----AEQLR  224 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEEE-TTTSCH----HHHHH
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEEe-cCchHH----HHHHH
Confidence            5678  999999973  3555555554 5665899999998777766542   2321   1111 111110    01111


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ..            ... .+|+++.+..-    ..+..+.++|+++|.+++.+.
T Consensus       225 ~~------------~~~-~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          225 ES------------CPA-GVDVYFDNVGG----NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             HH------------CTT-CEEEEEESCCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             Hh------------cCC-CCCEEEECCCH----HHHHHHHHHhccCcEEEEECC
Confidence            11            122 79999987652    557788899999999987543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.17  E-value=0.36  Score=40.91  Aligned_cols=101  Identities=17%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+|. |.+++.+++ .|.. |+++|.++..++.+++    .+.+    ....... ..+    .+.+...
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~~----lGa~----~~~~~~~~~~~----~~~i~~~  232 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKN----CGAD----VTLVVDPAKEE----ESSIIER  232 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHH----TTCS----EEEECCTTTSC----HHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hCCC----EEEcCcccccH----HHHHHHH
Confidence            56789999999875 666666666 4554 9999999988887763    2322    1111110 111    0111110


Q ss_pred             ccccccccccCCCC---CCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISE---TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~---~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ..   ...+|+++.+....   ..+..+.++|+++|.++....
T Consensus       233 ------------~~~~~g~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          233 ------------IRSAIGDLPNVTIDCSGNE---KCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             ------------HHHHSSSCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred             ------------hccccCCCCCEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence                        01   34699998765432   245677789999999987544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.84  E-value=0.059  Score=45.80  Aligned_cols=100  Identities=20%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +|++||-+|+|. |..++.+++ .|..+++++|.++..++.+++.    +..    .........+    .+.+..    
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~----~~~~~~~~~~----~~~v~~----  230 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD----YVINPFEEDV----VKEVMD----  230 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS----EEECTTTSCH----HHHHHH----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC----EEECCCCcCH----HHHHHH----
Confidence            789999999964 566666665 5665899999999888877642    321    1111111111    011111    


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ......+|+++.+...   ...+..+.+.|+++|.++....
T Consensus       231 --------~~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          231 --------ITDGNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             --------HTTTSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             --------HcCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEcc
Confidence                    1123469999876543   2346677889999999887543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.84  E-value=0.22  Score=41.96  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+  |.|..+..+++ .|. ++++++.++..++.+++.   .+..   ..+...+...+    .+.+...
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~----~~~~~~~  221 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD---DAFNYKEESDL----TAALKRC  221 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS---EEEETTSCSCS----HHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc---eEEecCCHHHH----HHHHHHH
Confidence            567899999997  34666666555 565 799999999887776532   2321   11111111111    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                   ....+|+++.+...    ..+..+.++|+++|.+++.+
T Consensus       222 -------------~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          222 -------------FPNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             -------------CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             -------------hCCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence                         12569999987653    25677888999999998754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.75  E-value=0.048  Score=45.59  Aligned_cols=37  Identities=14%  Similarity=0.131  Sum_probs=29.7

Q ss_pred             CCCceeEEEeccchhH-----------------------HHHHHHHHHHhccCCeEEEEe
Q 041459          146 ETEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~~-----------------------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ++++||+|++|||+..                       +..++..+.++|||||.+++.
T Consensus        37 ~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           37 PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            4678999999999731                       234677899999999999885

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.62  E-value=1.2  Score=38.39  Aligned_cols=114  Identities=12%  Similarity=0.047  Sum_probs=77.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .+.+|+.++.+-|.++..++..+   ++.+.=|-......+.|+..+++....+.+... .+.                 
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~-----------------   96 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD-----------------   96 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC-----------------
T ss_pred             CCCCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc-----------------
Confidence            45689999999999998876543   344432555666778899999987544554321 111                 


Q ss_pred             cccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhhh
Q 041459          138 SHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFL  200 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  200 (225)
                              ....||+++...|.  ......+..+...|++|+.+++.+-...-.....+.+.+.+
T Consensus        97 --------~~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~~  153 (375)
T 4dcm_A           97 --------YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVL  153 (375)
T ss_dssp             --------CCSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHHT
T ss_pred             --------cccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhhc
Confidence                    35679999987664  44666788999999999999876544444445555555543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.45  E-value=0.13  Score=44.03  Aligned_cols=99  Identities=13%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             ccCCCcEEEEc-cc-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYG-TG-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiG-cG-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.| +| .|..+..+++ .|+ ++++++.+++.++.+++    .+..    .........+    .+.+...
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~----~~~~~~~  227 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD----RPINYKTEPV----GTVLKQE  227 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTTSCH----HHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc----EEEecCChhH----HHHHHHh
Confidence            56789999999 34 4777777665 455 79999999988877764    2322    1111111111    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                   ....+|+++.+...    ..++.+.+.|+++|.+++...
T Consensus       228 -------------~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          228 -------------YPEGVDVVYESVGG----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             -------------CTTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred             -------------cCCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence                         23469999986653    456778889999999887543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.44  E-value=0.83  Score=33.20  Aligned_cols=96  Identities=13%  Similarity=-0.047  Sum_probs=54.8

Q ss_pred             CCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           59 GELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        59 ~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ..+|+=+|+|. |.... .+.+.|. .++++|.+++.++.++.    .+     +....++....     +.+...    
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g-----~~~i~gd~~~~-----~~l~~a----   67 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG-----VRAVLGNAANE-----EIMQLA----   67 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT-----CEEEESCTTSH-----HHHHHT----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC-----CCEEECCCCCH-----HHHHhc----
Confidence            35788888875 43322 3444554 69999999988877653    23     23444443221     111100    


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ....+|++++..+-+.....+....+.+.|+..++..
T Consensus        68 ---------~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           68 ---------HLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             ---------TGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ---------CcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEE
Confidence                     2346898887766554443344455667788777664

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.30  E-value=0.18  Score=42.61  Aligned_cols=99  Identities=17%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-.|+|. |..++.+++ .|. +++++|.++..++.+++    .+..    ..  .+....  ++.+.+... 
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~~--~d~~~~--~~~~~~~~~-  227 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD----LV--VNPLKE--DAAKFMKEK-  227 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS----EE--ECTTTS--CHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC----EE--ecCCCc--cHHHHHHHH-
Confidence            56789999999964 666666665 455 89999999988887753    2322    11  111110  000111110 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  . ..+|+++.+....   ..++.+.++|+++|.++....
T Consensus       228 ------------~-~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          228 ------------V-GGVHAAVVTAVSK---PAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             ------------H-SSEEEEEESSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred             ------------h-CCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEecc
Confidence                        1 4699998765432   346677889999999987543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.29  E-value=0.12  Score=44.11  Aligned_cols=99  Identities=13%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+ | .|..+..+++ .|+ +++++|.++..++.+++.    +..    .........+    .+.+...
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~----~~~~~~~~~~----~~~~~~~  231 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK----RGINYRSEDF----AAVIKAE  231 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS----EEEETTTSCH----HHHHHHH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC----EEEeCCchHH----HHHHHHH
Confidence            567899998843 3 3666666665 455 799999999988887652    321    1111111111    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                   ....+|+++.+..-.    .+..+.+.|+++|.++....
T Consensus       232 -------------~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          232 -------------TGQGVDIILDMIGAA----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             -------------HSSCEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             -------------hCCCceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence                         145799999866543    45667789999999887543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.17  E-value=0.082  Score=44.78  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             CCCceeEEEeccchh-----------------HHHHHHHHHHHhccCCeEEEEe
Q 041459          146 ETEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      +.+++|+|+++||+.                 .+...+..+.++|||||.+++.
T Consensus        30 ~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           30 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            467899999999983                 3566788899999999999985

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=93.08  E-value=0.08  Score=49.38  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=26.5

Q ss_pred             CCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEE
Q 041459          147 TEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       147 ~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~  181 (225)
                      ...+|.++.++--.      +..+++..+.+++++||++.-
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence            46799999864221      236788999999999998765

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=93.03  E-value=0.32  Score=41.06  Aligned_cols=69  Identities=10%  Similarity=-0.094  Sum_probs=41.0

Q ss_pred             CCceeEEEecc--c-h---hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhccccc-CCceEEEeee
Q 041459          147 TEKYDVVIANI--L-L---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEM-DDWTCVSGTK  218 (225)
Q Consensus       147 ~~~~DvIi~~~--~-~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~w~~~~~~k  218 (225)
                      ..++|+|+.+.  | .   -+-.++++.++++++|||++.--+    ....+++.+.+. |.......- +.+-.+.+++
T Consensus       184 ~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~  259 (308)
T 3vyw_A          184 NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASL  259 (308)
T ss_dssp             SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC----CCHHHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred             ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe----CcHHHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence            45799999864  1 1   123678999999999999986421    234555556554 654333322 2344555554


Q ss_pred             e
Q 041459          219 K  219 (225)
Q Consensus       219 ~  219 (225)
                      +
T Consensus       260 ~  260 (308)
T 3vyw_A          260 K  260 (308)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.03  E-value=0.048  Score=46.28  Aligned_cols=100  Identities=15%  Similarity=0.216  Sum_probs=61.5

Q ss_pred             ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++++||-.|+  |.|..+..+++ .|. ++++++.++..++.+++    .+..   . ........+    .+.+...
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga~---~-~~d~~~~~~----~~~~~~~  230 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGAD---E-TVNYTHPDW----PKEVRRL  230 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---E-EEETTSTTH----HHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---E-EEcCCcccH----HHHHHHH
Confidence            557899999998  34666666665 455 79999999988887753    2321   1 111111110    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  .....+|+++.+..-    ..+..+.+.|+++|.++....
T Consensus       231 ------------~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          231 ------------TGGKGADKVVDHTGA----LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             ------------TTTTCEEEEEESSCS----SSHHHHHHHEEEEEEEEESSC
T ss_pred             ------------hCCCCceEEEECCCH----HHHHHHHHhhccCCEEEEEec
Confidence                        123479999987652    245677789999999887543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.97  E-value=0.057  Score=46.48  Aligned_cols=96  Identities=15%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|+|. |.+++.+++. |+ +++++|.++..++.+++    .+..    .+......       +.     
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~-------~~-----  250 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD----EVVNSRNA-------DE-----  250 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS----EEEETTCH-------HH-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----EEeccccH-------HH-----
Confidence            56789999999875 6667776664 54 59999999988888764    2322    11111000       00     


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                             +..+  ...+|+|+......   ..++.+.+.|+++|.++....
T Consensus       251 -------~~~~--~~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          251 -------MAAH--LKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             -------HHTT--TTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred             -------HHHh--hcCCCEEEECCCCH---HHHHHHHHHhccCCEEEEecc
Confidence                   0111  14799998754322   124567789999999887544

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=92.94  E-value=0.19  Score=42.59  Aligned_cols=97  Identities=10%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-c--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-F--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +|++||-+|+|. |.+++.+++ .  |. +++++|.++..++.+++.    +.+    ........   .   +....  
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~---~---~~~~~--  232 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GAD----YVSEMKDA---E---SLINK--  232 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCS----EEECHHHH---H---HHHHH--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCC----EEeccccc---h---HHHHH--
Confidence            789999999975 666666665 4  54 699999999888887642    321    01100000   0   00000  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                +.....+|+|+......   ..++.+.++|+++|.++....
T Consensus       233 ----------~~~g~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          233 ----------LTDGLGASIAIDLVGTE---ETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             ----------HHTTCCEEEEEESSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred             ----------hhcCCCccEEEECCCCh---HHHHHHHHHhhcCCEEEEeCC
Confidence                      11234799998765432   346677889999999987543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=92.79  E-value=0.12  Score=43.77  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=61.1

Q ss_pred             ccCCCcEEEEccccc-HHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSG-ILGIAAI-KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG-~~~~~l~-~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++|++||=+|+|++ .++..++ ..+..+|+++|.+++-++.+++.    +..   ..+...+ ..+    .+.+..  
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~---~~i~~~~-~~~----~~~v~~--  226 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GAD---VTINSGD-VNP----VDEIKK--  226 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCS---EEEEC-C-CCH----HHHHHH--
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCe---EEEeCCC-CCH----HHHhhh--
Confidence            567899999999874 4454444 46778899999999887776643    322   1111111 111    011111  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ......+|+++.+..-   ...+....++|+++|.+++...
T Consensus       227 ----------~t~g~g~d~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          227 ----------ITGGLGVQSAIVCAVA---RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             ----------HTTSSCEEEEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             ----------hcCCCCceEEEEeccC---cchhheeheeecCCceEEEEec
Confidence                      1134467777654332   2346677789999999887543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.74  E-value=0.25  Score=41.80  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             CCCcEEEE-cccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDY-GTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDi-GcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +|++||-. |+|. |.+++.+++ .|+ ++++++.++..++.+++.    +.+    ...... +.+    .+.+...  
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~-~~~----~~~~~~~--  213 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GAD----IVLNHK-ESL----LNQFKTQ--  213 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCS----EEECTT-SCH----HHHHHHH--
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc----EEEECC-ccH----HHHHHHh--
Confidence            68899988 4554 666666666 455 899999999888888752    321    111111 111    1111111  


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                 ....+|+++.+..-   ...++.+.++|+++|.++..
T Consensus       214 -----------~~~g~Dvv~d~~g~---~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          214 -----------GIELVDYVFCTFNT---DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             -----------TCCCEEEEEESSCH---HHHHHHHHHHEEEEEEEEES
T ss_pred             -----------CCCCccEEEECCCc---hHHHHHHHHHhccCCEEEEE
Confidence                       34579999875432   23456778899999999763

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.74  E-value=0.04  Score=46.38  Aligned_cols=99  Identities=21%  Similarity=0.216  Sum_probs=59.4

Q ss_pred             ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++++||-.|+  |.|.....+++ .|. +++++|.++..++.+++.    +..   ..+. .....+    .+.+...
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~---~~~~-~~~~~~----~~~~~~~  204 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVIN-YREEDL----VERLKEI  204 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEE-TTTSCH----HHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC---EEEE-CCCccH----HHHHHHH
Confidence            457899999984  33555555444 565 799999999888777642    321   1111 111110    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                  .....+|+++.+..    ...++.+.++|+++|.++...
T Consensus       205 ------------~~~~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          205 ------------TGGKKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             ------------TTTCCEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred             ------------hCCCCceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence                        12346999998765    234667788999999988754

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=92.71  E-value=3.8  Score=34.31  Aligned_cols=114  Identities=11%  Similarity=0.050  Sum_probs=66.8

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCcceEEEecCCCCCccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG-PKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ...|+++|||-=+....+......+++=+| .|.+++..++.+...+.. .+.......+...   ++.+.+..      
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d---~~~~~l~~------  172 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ---DWPPALRS------  172 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS---CHHHHHHH------
T ss_pred             CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh---hHHHHHHh------
Confidence            368999999987665544322235789999 599999988888754432 2333333333322   22221110      


Q ss_pred             cccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEeccCCC
Q 041459          138 SHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILSE  187 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~  187 (225)
                          ..+ ....--++++...+.     ....++..+...+.||+.+++..+..+
T Consensus       173 ----~g~-d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~  222 (310)
T 2uyo_A          173 ----AGF-DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLH  222 (310)
T ss_dssp             ----TTC-CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             ----ccC-CCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence                011 223344555544432     345678888888899999999765443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.59  E-value=0.039  Score=46.90  Aligned_cols=98  Identities=19%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+ | .|..+..+++ .|+ ++++++.++..++.+++.    +..    ...... ..+    .+.+.. 
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~----~v~~~~-~~~----~~~v~~-  221 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD----IVLPLE-EGW----AKAVRE-  221 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS----EEEESS-TTH----HHHHHH-
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc----EEecCc-hhH----HHHHHH-
Confidence            557899999997 3 3667776666 455 899999999888877652    322    111111 111    111111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                 ......+|+++.+..-.    .+..+.+.|+++|.++..+
T Consensus       222 -----------~~~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          222 -----------ATGGAGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             -----------HTTTSCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             -----------HhCCCCceEEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence                       11344799999765432    4667888999999998754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.49  E-value=0.092  Score=42.92  Aligned_cols=37  Identities=11%  Similarity=0.104  Sum_probs=30.5

Q ss_pred             CCCceeEEEeccchh-----------------HHHHHHHHHHHhccCCeEEEEe
Q 041459          146 ETEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      +.+++|+|+++||+.                 .+...+..+.++|+|+|.+++.
T Consensus        20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A           20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            456899999999973                 3456788889999999999886

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.21  E-value=0.065  Score=45.74  Aligned_cols=99  Identities=17%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++++||-.|++  .|..+..+++ .|. ++++++.+++.++.+++    .+..   . ........+    .+.+...
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~-~~d~~~~~~----~~~~~~~  234 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---E-VFNHREVNY----IDKIKKY  234 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---E-EEETTSTTH----HHHHHHH
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC---E-EEeCCCchH----HHHHHHH
Confidence            5678999999973  3566665555 454 79999999988776643    2321   1 111111110    0111110


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                  .....+|+++.+..-    ..+....++|+++|.++...
T Consensus       235 ------------~~~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          235 ------------VGEKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             ------------HCTTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             ------------cCCCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence                        123479999876543    24567788999999988754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.21  E-value=0.077  Score=44.75  Aligned_cols=100  Identities=19%  Similarity=0.227  Sum_probs=60.4

Q ss_pred             ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++++||-.|+  |.|.....+++ .|. +++++|.+++.++.+++.    +..   . .........    .+.+...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~---~-~~d~~~~~~----~~~i~~~  209 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH---H-TINYSTQDF----AEVVREI  209 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---E-EEETTTSCH----HHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC---E-EEECCCHHH----HHHHHHH
Confidence            457899999985  34666665554 565 799999999888777542    321   1 111111110    0111110


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  .....+|+++.+...    ..++.+.+.|+++|.++....
T Consensus       210 ------------~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          210 ------------TGGKGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             ------------HTTCCEEEEEECSCT----TTHHHHHHTEEEEEEEEECCC
T ss_pred             ------------hCCCCCeEEEECCcH----HHHHHHHHhhccCCEEEEEec
Confidence                        023469999987653    346677889999999887543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.18  E-value=0.4  Score=40.50  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=60.7

Q ss_pred             ccCCCcEEEEccc--ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTG--SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcG--tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++++||-.|++  .|..+..+++ .|. +++++|.++..++.+++    .+..   ..+...+...+    .+.+...
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~----~~~~~~~  234 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDI----VGAVLKA  234 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCH----HHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhH----HHHHHHH
Confidence            5678999999983  4666665555 565 79999999887776653    2321   11111101111    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ... .+|+++.+...   ...++.+.+.|+++|.++....
T Consensus       235 ------------~~~-~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          235 ------------TDG-GAHGVINVSVS---EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             ------------HTS-CEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCC
T ss_pred             ------------hCC-CCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeC
Confidence                        123 79999987653   2356778889999999987543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.13  E-value=0.11  Score=44.07  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +|++||-.|+|. |.+++.+++ .|..+++++|.++..++.+++.       .+.  ........+    .+.+.     
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-------a~~--v~~~~~~~~----~~~~~-----  225 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-------ADR--LVNPLEEDL----LEVVR-----  225 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-------CSE--EECTTTSCH----HHHHH-----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-------HHh--ccCcCccCH----HHHHH-----
Confidence            789999999864 566666665 4665799999998776655431       111  111111111    01111     


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                             .. ....+|+++.....   ...++.+.+.|+++|.++....
T Consensus       226 -------~~-~~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          226 -------RV-TGSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             -------HH-HSSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             -------Hh-cCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence                   11 13469999876543   2346677889999999887543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=92.04  E-value=0.16  Score=45.52  Aligned_cols=43  Identities=16%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             CCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+++|++||.|.++.-+.+.|...+.++|+++.+.+.-+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            3589999999999999888888777999999999888877765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.02  E-value=0.16  Score=43.01  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             ccCCCcEEEEcccc--cHHHHHHHh-c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           56 IKGGELFLDYGTGS--GILGIAAIK-F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        56 ~~~~~~vlDiGcGt--G~~~~~l~~-~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      ++++++||-.|+|+  |..+..+++ . |. +++++|.++..++.+++.    +..   ..+. .....    ..+....
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~---~~~~-~~~~~----~~~~~~~  234 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD---YVIN-ASMQD----PLAEIRR  234 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS---EEEE-TTTSC----HHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC---EEec-CCCcc----HHHHHHH
Confidence            56789999999984  455555554 4 55 699999999888877542    321   1111 11110    0011111


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      .            ...+.+|+++.+..-.   ..++.+.+.|+++|.++....
T Consensus       235 ~------------~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          235 I------------TESKGVDAVIDLNNSE---KTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             H------------TTTSCEEEEEESCCCH---HHHTTGGGGEEEEEEEEECCS
T ss_pred             H------------hcCCCceEEEECCCCH---HHHHHHHHHHhcCCEEEEECC
Confidence            1            0114799999765432   346677889999999987544

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=91.93  E-value=1.6  Score=36.94  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             ccCC------CcEEEEcccc-cHHH-HHHH-h-cCCCeEEEEeCCHH---HHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           56 IKGG------ELFLDYGTGS-GILG-IAAI-K-FGAAMSVGVDIDPQ---AIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        56 ~~~~------~~vlDiGcGt-G~~~-~~l~-~-~~~~~v~~vDi~~~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      +++|      ++||-+|+|. |.++ +.++ + .|..+++++|.+++   -++.+++    .+..    .. ......+ 
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~----~v-~~~~~~~-  233 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDAT----YV-DSRQTPV-  233 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCE----EE-ETTTSCG-
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCc----cc-CCCccCH-
Confidence            5578      9999999865 6777 7777 5 46666999999987   7777753    3321    11 1111111 


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                         .+ +            ... .. .+|+|+-.....   ..+..+.++|+++|.++....
T Consensus       234 ---~~-i------------~~~-~g-g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          234 ---ED-V------------PDV-YE-QMDFIYEATGFP---KHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             ---GG-H------------HHH-SC-CEEEEEECSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred             ---HH-H------------HHh-CC-CCCEEEECCCCh---HHHHHHHHHHhcCCEEEEEeC
Confidence               01 1            111 13 799998754332   346677889999999988544

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.86  E-value=0.097  Score=44.62  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=59.3

Q ss_pred             ccCCCcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+  |.|..+..+++ .|. +++++|.++..++.+++.    +..   ..+. .....+    .+.+.. 
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~---~~~~-~~~~~~----~~~~~~-  225 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA---AGFN-YKKEDF----SEATLK-  225 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---EEEE-TTTSCH----HHHHHH-
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc---EEEe-cCChHH----HHHHHH-
Confidence            557899999984  23555555554 454 799999999888777432    321   1111 111110    011111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                 ......+|+++.+..-.    .+....+.|+++|.++....
T Consensus       226 -----------~~~~~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          226 -----------FTKGAGVNLILDCIGGS----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             -----------HTTTSCEEEEEESSCGG----GHHHHHHHEEEEEEEEECCC
T ss_pred             -----------HhcCCCceEEEECCCch----HHHHHHHhccCCCEEEEEec
Confidence                       11234699999876543    35567789999999988544

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.78  E-value=1.2  Score=37.36  Aligned_cols=90  Identities=20%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFGAA-MSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~~~-~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++|.=+|+|. | .++..+++.|.. +|++.|.+++.++.+++    .+...    ....+....               
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~----~~~~~~~~~---------------   90 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID----EGTTSIAKV---------------   90 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS----EEESCTTGG---------------
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc----hhcCCHHHH---------------
Confidence            6788999886 3 344455666653 79999999988777653    23210    111111100               


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                               .....|+|+...|......++..+...++++.+++-
T Consensus        91 ---------~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A           91 ---------EDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ---------GGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             ---------hhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEE
Confidence                     023479999988887788888899999999876643

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.69  E-value=0.13  Score=43.60  Aligned_cols=39  Identities=13%  Similarity=0.103  Sum_probs=31.6

Q ss_pred             CCCceeEEEeccchh--------------HHHHHHHHHHHhccCCeEEEEecc
Q 041459          146 ETEKYDVVIANILLN--------------PLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      +.+++|+|+++||+.              .+...+..+.++|+|||.+++..-
T Consensus        55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG  107 (319)
T ss_dssp             CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            466899999999974              245677888999999999998643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.67  E-value=0.11  Score=43.99  Aligned_cols=95  Identities=16%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||-.|+ | .|..++.+++. |+ +++++ .++..++.+++    .+..   . +.  ....+    .+.....
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~---~-i~--~~~~~----~~~~~~~  211 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT---P-ID--ASREP----EDYAAEH  211 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE---E-EE--TTSCH----HHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC---E-ec--cCCCH----HHHHHHH
Confidence            557899999994 4 36777776664 55 79999 88887777654    2321   1 21  11111    0111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                  .....+|+++.+..-    ..+..+.+.|+++|.++..
T Consensus       212 ------------~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          212 ------------TAGQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             ------------HTTSCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             ------------hcCCCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence                        134579999876542    3567778899999999874

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=91.59  E-value=2.5  Score=35.84  Aligned_cols=46  Identities=11%  Similarity=0.159  Sum_probs=35.3

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      +...|+.+|||..+....+... +...++-+|. |.+++.-++.+...
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~  143 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRES  143 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhc
Confidence            4579999999999998887653 4456777777 88888877776654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=91.54  E-value=0.16  Score=42.59  Aligned_cols=98  Identities=13%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             ccCCC-cEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           56 IKGGE-LFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        56 ~~~~~-~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      +++++ +||-.|+ | .|..++.+++ .|. ++++++.+++.++.+++    .+..   ..+...+.+.      +.   
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~------~~---  209 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGAS---EVISREDVYD------GT---  209 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCS---EEEEHHHHCS------SC---
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEECCCchH------HH---
Confidence            44564 8999997 4 3666676665 465 59999998887777764    2322   1111111000      00   


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +..+ ....+|+++.+..-    ..+..+.+.++++|.++..+.
T Consensus       210 ---------~~~~-~~~~~d~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          210 ---------LKAL-SKQQWQGAVDPVGG----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             ---------CCSS-CCCCEEEEEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred             ---------HHHh-hcCCccEEEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence                     0011 23469999876543    246778889999999987544

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=91.48  E-value=0.19  Score=42.06  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             ccCCC-cEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           56 IKGGE-LFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        56 ~~~~~-~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      ++++. +||-.|+ | .|.+++.+++ .|. ++++++.++..++.+++    .+..  . .+...+.. .     +.   
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~--~-~i~~~~~~-~-----~~---  208 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAK--E-VLAREDVM-A-----ER---  208 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCS--E-EEECC---------------
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCc--E-EEecCCcH-H-----HH---
Confidence            44564 8999997 3 3677777666 465 69999999887777754    2322  1 11111100 0     00   


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ++.+ ....+|+++.+..-.    .+..+.+.++++|.++..+.
T Consensus       209 ---------~~~~-~~~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          209 ---------IRPL-DKQRWAAAVDPVGGR----TLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             ------------C-CSCCEEEEEECSTTT----THHHHHHTEEEEEEEEECSC
T ss_pred             ---------HHHh-cCCcccEEEECCcHH----HHHHHHHhhccCCEEEEEee
Confidence                     0011 234699998765432    45677889999999987543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=91.24  E-value=0.55  Score=41.38  Aligned_cols=107  Identities=17%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             ccCCCcEEEEcc-cc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCc-------c--
Q 041459           56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPA-------S--  124 (225)
Q Consensus        56 ~~~~~~vlDiGc-Gt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--  124 (225)
                      +++|++||=.|+ |. |.+++.+++....++++++.++.-++.+++    .+..    .........+..       +  
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~d~~~~~~~~~~~~~  297 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA----MGAE----AIIDRNAEGYRFWKDENTQDPK  297 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCC----EEEETTTTTCCSEEETTEECHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh----hCCc----EEEecCcCcccccccccccchH
Confidence            567899999987 43 677777776433478889989988888754    2322    111111111000       0  


Q ss_pred             -ccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          125 -MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                       +.+....         +........+|+++-+..-    ..+..+.++|+++|.++...
T Consensus       298 ~~~~~~~~---------i~~~t~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          298 EWKRFGKR---------IRELTGGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHH---------HHHHHTSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHH---------HHHHhCCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence             0000000         0111134579999875543    35677788999999998854

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=90.55  E-value=0.18  Score=41.75  Aligned_cols=92  Identities=12%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC-CCCCccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFPASMNERVDG  131 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  131 (225)
                      +++|++|+-.|+ | .|..+..+++ .|. ++++++.++..++.+++    .+..    ....... ..+          
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~~~~~~~~~~~----------  183 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE----EAATYAEVPER----------  183 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS----EEEEGGGHHHH----------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC----EEEECCcchhH----------
Confidence            668899999997 3 3666666665 455 89999999988777753    2321    1111100 000          


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                               ..   .-..+|+++. ...    ..+..+.+.|+++|.++...
T Consensus       184 ---------~~---~~~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          184 ---------AK---AWGGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             ---------HH---HTTSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             ---------HH---HhcCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence                     00   0146999987 443    34677888999999988743

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=89.77  E-value=0.52  Score=39.35  Aligned_cols=92  Identities=14%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             ccCCCcEEEEc-ccc-cHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC-CCccccccccc
Q 041459           56 IKGGELFLDYG-TGS-GILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FPASMNERVDG  131 (225)
Q Consensus        56 ~~~~~~vlDiG-cGt-G~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  131 (225)
                      +++|++||=.| +|. |.+++.+++. |+ ++++++ ++..++.+++    .+..    ......... +.        .
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~----lGa~----~~i~~~~~~~~~--------~  211 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA----LGAE----QCINYHEEDFLL--------A  211 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH----HTCS----EEEETTTSCHHH--------H
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH----cCCC----EEEeCCCcchhh--------h
Confidence            56889999886 554 7777777764 55 788887 4544555543    3432    111111111 10        0


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                    ....+|+++-+..-.    .+..+.++|+++|.++...
T Consensus       212 --------------~~~g~D~v~d~~g~~----~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          212 --------------ISTPVDAVIDLVGGD----VGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             --------------CCSCEEEEEESSCHH----HHHHHGGGEEEEEEEEECC
T ss_pred             --------------hccCCCEEEECCCcH----HHHHHHHhccCCCEEEEeC
Confidence                          124699998754432    2367889999999998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.69  E-value=2  Score=35.85  Aligned_cols=104  Identities=14%  Similarity=0.081  Sum_probs=61.4

Q ss_pred             CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC--CcceEEEecCCCCCccccccccccc
Q 041459           58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP--KKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ...+|.=+|+|. | .++..+++.|. .|+.+ .+++.++..++.    ++..  ....... .....            
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~-~~~~~------------   78 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEAT----GLRLETQSFDEQV-KVSAS------------   78 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHH----CEEEECSSCEEEE-CCEEE------------
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEE-eeeee------------
Confidence            457899999987 4 33445666664 68888 888777666543    2110  0011100 00000            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                      +        .......+|+|+...+.......++.+...++++..++....+-..
T Consensus        79 ~--------~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~  125 (318)
T 3hwr_A           79 S--------DPSAVQGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVEN  125 (318)
T ss_dssp             S--------CGGGGTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred             C--------CHHHcCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence            0        0001246899999888778888999999999999877665444433

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=89.26  E-value=0.23  Score=42.13  Aligned_cols=97  Identities=15%  Similarity=0.100  Sum_probs=53.9

Q ss_pred             cCC-CcEEEEcccc---cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           57 KGG-ELFLDYGTGS---GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        57 ~~~-~~vlDiGcGt---G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      +++ ++|| +..|+   |..++.+++ .|+ ++++++.++.-++.+++    .+..    .........+    .+.+..
T Consensus       162 ~~g~~~vl-i~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~----~~~v~~  227 (349)
T 3pi7_A          162 QEGEKAFV-MTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKD----IGAA----HVLNEKAPDF----EATLRE  227 (349)
T ss_dssp             HHCCSEEE-ESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHH----HTCS----EEEETTSTTH----HHHHHH
T ss_pred             hCCCCEEE-EeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC----EEEECCcHHH----HHHHHH
Confidence            345 4555 43344   444555554 465 79999999988888764    2321    1111111111    011111


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      .            .....+|+++.+.....    +..+.++|+++|.++..+
T Consensus       228 ~------------~~~~g~D~vid~~g~~~----~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          228 V------------MKAEQPRIFLDAVTGPL----ASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             H------------HHHHCCCEEEESSCHHH----HHHHHHHSCTTCEEEECC
T ss_pred             H------------hcCCCCcEEEECCCChh----HHHHHhhhcCCCEEEEEe
Confidence            1            01246999987654332    366778999999998854

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.94  E-value=3.7  Score=35.81  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=57.1

Q ss_pred             CCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           59 GELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        59 ~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ...|+=+|+|. |.... .|.+.+ ..|+++|.++..++.++.    .+.     .+..+++...     +.+...    
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~----~g~-----~vi~GDat~~-----~~L~~a----   64 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRK----FGM-----KVFYGDATRM-----DLLESA----   64 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHH----TTC-----CCEESCTTCH-----HHHHHT----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHh----CCC-----eEEEcCCCCH-----HHHHhc----
Confidence            45688888765 32222 233445 459999999999887763    232     2455555332     111111    


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                               .....|+|++..+-......+....+.+.|+..++.
T Consensus        65 ---------gi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           65 ---------GAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             ---------TTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ---------CCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence                     345689888876655555555666677788877665

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=88.61  E-value=0.37  Score=40.18  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=42.8

Q ss_pred             CceeEEEeccch----hHHH----------HHHHHHHHhccCCeEEEEeccCCC--cHHHHHHHHHhhhhhhc
Q 041459          148 EKYDVVIANILL----NPLL----------QLADHIVSYAKPGAVVGISGILSE--QLPHIINRYSEFLEDIL  204 (225)
Q Consensus       148 ~~~DvIi~~~~~----~~~~----------~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~  204 (225)
                      +++|+|++|+..    +++.          -++..+.+.|+|||.+++..+...  ..+++.+.+++.|..+.
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr  277 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSR  277 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEE
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceee
Confidence            679999997542    2211          246778899999999999888777  67888888888765443

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=88.11  E-value=0.42  Score=45.23  Aligned_cols=45  Identities=20%  Similarity=0.140  Sum_probs=35.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhcC------CCeEEEEeCCHHHHHHHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFG------AAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~------~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +..+|+|++||.|+++.-+.+.|      ..-+.++|+++.+++.-+.|..
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            34689999999999987665543      4568999999999988888753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.90  E-value=7  Score=29.27  Aligned_cols=98  Identities=14%  Similarity=0.080  Sum_probs=52.6

Q ss_pred             CCcEEEEcccc-cHHHH-HHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           59 GELFLDYGTGS-GILGI-AAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        59 ~~~vlDiGcGt-G~~~~-~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +++|+=+|+|. |.... .+.+. +. .|+++|.++..++.++.    .+.     .....+....     +.       
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g~-----~~~~gd~~~~-----~~-------   96 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EGR-----NVISGDATDP-----DF-------   96 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TTC-----CEEECCTTCH-----HH-------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CCC-----CEEEcCCCCH-----HH-------
Confidence            56888888765 33322 34445 54 59999999987766542    232     2333332211     00       


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                           +........+|+|+...+-......+-...+.+.|++.++...
T Consensus        97 -----l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A           97 -----WERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             -----HHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             -----HHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence                 0000013458988886554433333334555667777777643

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=87.88  E-value=11  Score=32.25  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=68.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .+.+||.++-+-|.++..++  +..+++.+.-+-...+.    +..+++..   .. ....+.                 
T Consensus        45 ~~~~~l~~n~~~g~~~~~~~--~~~~~~~~~~~~~~~~~----l~~~~~~~---~~-~~~~~~-----------------   97 (381)
T 3dmg_A           45 FGERALDLNPGVGWGSLPLE--GRMAVERLETSRAAFRC----LTASGLQA---RL-ALPWEA-----------------   97 (381)
T ss_dssp             CSSEEEESSCTTSTTTGGGB--TTBEEEEEECBHHHHHH----HHHTTCCC---EE-CCGGGS-----------------
T ss_pred             hCCcEEEecCCCCccccccC--CCCceEEEeCcHHHHHH----HHHcCCCc---cc-cCCccC-----------------
Confidence            45799999999998776553  22456666433322222    55677652   11 111000                 


Q ss_pred             cccccCCCCCCceeEEEeccchh----HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          138 SHEIRGISETEKYDVVIANILLN----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                              ....||+|+.-.|-.    .....+.++...|+|||.+++.+-..+....+.+.++..
T Consensus        98 --------~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~~  155 (381)
T 3dmg_A           98 --------AAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARAL  155 (381)
T ss_dssp             --------CTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHHH
T ss_pred             --------CcCCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHhh
Confidence                    356799999988742    356678889999999999998765566666676666654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=87.56  E-value=6  Score=28.17  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=25.8

Q ss_pred             CCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAH   98 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~   98 (225)
                      .++|+=+|+|.  ++..    +.+.|. +++++|.+++.++.++
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~-~V~~id~~~~~~~~~~   46 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGK-KVLAVDKSKEKIELLE   46 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTC-CEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence            46788888865  4433    344454 6999999998877665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=87.29  E-value=2.3  Score=31.22  Aligned_cols=101  Identities=19%  Similarity=0.033  Sum_probs=52.8

Q ss_pred             CCCcEEEEcccc-cHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      .+.+|+=+|+|. |.... .+.+.|. +|+++|.++..++.++.   ..+     ......+....     +.+...   
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~g-----~~~~~~d~~~~-----~~l~~~---   80 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EFS-----GFTVVGDAAEF-----ETLKEC---   80 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TCC-----SEEEESCTTSH-----HHHHTT---
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cCC-----CcEEEecCCCH-----HHHHHc---
Confidence            578899998865 43322 2444554 79999999865433210   111     22222222110     000000   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ....+|+|+...+.......+..+.+.+.+...++.....
T Consensus        81 ----------~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           81 ----------GMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD  120 (155)
T ss_dssp             ----------TGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred             ----------CcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence                      1245899988766555555555555555666666664433

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=87.16  E-value=1.4  Score=38.47  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             ccCCCcEEEEcc-cc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccc-----
Q 041459           56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNER-----  128 (225)
Q Consensus        56 ~~~~~~vlDiGc-Gt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  128 (225)
                      +++|++||=.|+ |. |..++.+++....++++++.++..++.+++    .+..   ..+...+.+.. ....+.     
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~-~~~~~~~~~~~  289 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCD---LVINRAELGIT-DDIADDPRRVV  289 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCC---CEEEHHHHTCC-TTGGGCHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC---EEEeccccccc-ccccccccccc
Confidence            567899999987 33 666666666433578899999988887753    2322   11111111000 000000     


Q ss_pred             --ccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          129 --VDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       129 --~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                        ...+.     ..+... ....+|+++.+...    ..+....+.++++|.++...
T Consensus       290 ~~~~~~~-----~~v~~~-~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          290 ETGRKLA-----KLVVEK-AGREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHH-----HHHHHH-HSSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             hhhhHHH-----HHHHHH-hCCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence              00000     000011 13469999876554    24667778999999998854

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=87.13  E-value=0.61  Score=43.21  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=27.0

Q ss_pred             CCceeEEEeccch------hHHHHHHHHHHHhccCCeEEEEe
Q 041459          147 TEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       147 ~~~~DvIi~~~~~------~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ...+|.++.+.--      -+-.+++..+.++++|||++.-.
T Consensus       177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence            4679999985421      12467889999999999998753

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=86.73  E-value=0.62  Score=40.77  Aligned_cols=43  Identities=19%  Similarity=-0.091  Sum_probs=35.9

Q ss_pred             CcEEEEcccccHHHHHHHhcC--CCe----EEEEeCCHHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSGILGIAAIKFG--AAM----SVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~--~~~----v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+|+|++||.|.+...+.+.|  ..-    +.++|+++.+++.-+.|..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            589999999999988877665  344    8899999999988887765

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=86.63  E-value=0.78  Score=44.75  Aligned_cols=43  Identities=19%  Similarity=0.069  Sum_probs=36.8

Q ss_pred             CCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+++|++||.|.++.-+.+.|. ..+.++|+++.+.+.-+.|.
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~  583 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN  583 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            34899999999999998888886 56889999999988877764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=86.17  E-value=5  Score=32.13  Aligned_cols=89  Identities=12%  Similarity=0.066  Sum_probs=56.1

Q ss_pred             CCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           59 GELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        59 ~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +++|.=+|+|. | .++..+++.+...+++.|.+++.++.+.+..   ++     ... .+...                
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g~-----~~~-~~~~~----------------   64 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---EA-----EYT-TDLAE----------------   64 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---TC-----EEE-SCGGG----------------
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---CC-----cee-CCHHH----------------
Confidence            46788899875 3 2333455566555899999998776654431   21     111 11000                


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                               .....|+|+...+......+++.+...+++|.+++-
T Consensus        65 ---------~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~  100 (266)
T 3d1l_A           65 ---------VNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVH  100 (266)
T ss_dssp             ---------SCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             ---------HhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEE
Confidence                     123579999988777777788888888888876654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=85.94  E-value=6.5  Score=31.63  Aligned_cols=85  Identities=14%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             cEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           61 LFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        61 ~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      +|.=+|||. | .++..+++.+. +++++|.++..++.+.+    .+...   .. ..   ..                 
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----~g~~~---~~-~~---~~-----------------   52 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD---EA-GQ---DL-----------------   52 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS---EE-ES---CG-----------------
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh----CCCCc---cc-cC---CH-----------------
Confidence            466788876 3 22334555554 69999999987766532    23210   11 10   00                 


Q ss_pred             ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459          139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (225)
                         ..  . ...|+|+...+......++..+...++++.+++
T Consensus        53 ---~~--~-~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           53 ---SL--L-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             ---GG--G-TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ---HH--h-CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEE
Confidence               00  2 458999998887777888888888888887654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=85.89  E-value=0.63  Score=39.64  Aligned_cols=93  Identities=16%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCH---HHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           59 GELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDP---QAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        59 ~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      |++||-.|+|. |..++.+++ .|. +++++|.++   +.++.+++    .+..  .  .. .+  .+.    +.+    
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga~--~--v~-~~--~~~----~~~----  240 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKTN--Y--YN-SS--NGY----DKL----  240 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTCE--E--EE-CT--TCS----HHH----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCCc--e--ec-hH--HHH----HHH----
Confidence            89999999853 455555554 566 899999988   77766653    2321  1  11 11  110    110    


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHH-HHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~  184 (225)
                              .. .. ..+|+++.+.....   .+ +.+.+.|+++|.++....
T Consensus       241 --------~~-~~-~~~d~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          241 --------KD-SV-GKFDVIIDATGADV---NILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             --------HH-HH-CCEEEEEECCCCCT---HHHHHHGGGEEEEEEEEECSC
T ss_pred             --------HH-hC-CCCCEEEECCCChH---HHHHHHHHHHhcCCEEEEEec
Confidence                    00 02 56999998654321   34 677889999999987544

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.87  E-value=10  Score=29.24  Aligned_cols=93  Identities=12%  Similarity=-0.068  Sum_probs=52.3

Q ss_pred             cEEEEcccccHHHHHHH----hcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           61 LFLDYGTGSGILGIAAI----KFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~----~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +|+=+|+  |.++..++    +.+ ..++++|.+++.++...+.   .+     .....++....     +.+...    
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~---~~-----~~~i~gd~~~~-----~~l~~a----   61 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKK---LK-----ATIIHGDGSHK-----EILRDA----   61 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHH---SS-----SEEEESCTTSH-----HHHHHH----
T ss_pred             EEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHH---cC-----CeEEEcCCCCH-----HHHHhc----
Confidence            4666665  44444433    344 4699999999877654322   12     23444444321     111110    


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               .-..+|++++..+-+.....+....+.+.+...++..
T Consensus        62 ---------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           62 ---------EVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             ---------TCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             ---------CcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence                     2356899988776665555566666666676666653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=85.76  E-value=12  Score=29.98  Aligned_cols=88  Identities=19%  Similarity=0.163  Sum_probs=55.3

Q ss_pred             cEEEEcccc-c-HHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           61 LFLDYGTGS-G-ILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        61 ~vlDiGcGt-G-~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +|.=+|+|. | .++..+++.|. .+|++.|.++..++.+++    .+...   .. ..+...                 
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~-~~~~~~-----------------   57 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EG-TTSIAK-----------------   57 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EE-ESCGGG-----------------
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCcc---cc-cCCHHH-----------------
Confidence            577788876 3 23334555554 369999999987766542    23210   01 100000                 


Q ss_pred             cccccCCCCCC-ceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          138 SHEIRGISETE-KYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~-~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                              ... ..|+|+...+......++..+...++++.+++.
T Consensus        58 --------~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           58 --------VEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             --------GGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --------HhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence                    123 579999988887777888888888999886655

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=85.24  E-value=2.3  Score=35.13  Aligned_cols=57  Identities=19%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             CceeEEEeccc----hhHHH----------HHHHHHHHhccCCeEEEEeccCC--CcHHHHHHHHHhhhhhhc
Q 041459          148 EKYDVVIANIL----LNPLL----------QLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEFLEDIL  204 (225)
Q Consensus       148 ~~~DvIi~~~~----~~~~~----------~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~~  204 (225)
                      ++||+||+|..    .+++.          -+-..+.+.|+|||.+++...+.  ...+.+...+.+.|....
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~r  282 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSR  282 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEE
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeee
Confidence            79999999854    24432          34566788999999999976654  345667777776665443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=84.50  E-value=9.6  Score=30.83  Aligned_cols=88  Identities=14%  Similarity=0.116  Sum_probs=55.6

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++|.=+|+|. | .++..+++.+ ..++++.|.++..++.+++    .+...    ....+...                
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~----~~~~~~~~----------------   62 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD----EATADFKV----------------   62 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS----EEESCTTT----------------
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc----cccCCHHH----------------
Confidence            5788888887 3 3333455554 3579999999987766543    23210    11111110                


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh-ccCCeEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY-AKPGAVVG  180 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~-LkpgG~l~  180 (225)
                               .-...|+|+...+......++..+... ++++.+++
T Consensus        63 ---------~~~~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           63 ---------FAALADVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             ---------TGGGCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             ---------hhcCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence                     123579999988887778888888888 88886655

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=83.97  E-value=14  Score=29.95  Aligned_cols=101  Identities=20%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc-ceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK-MKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++|.=+|+|. | .++..+++.|. +|+.+|.+++.++..++.    ++.... ............      ....    
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~------~~~~----   68 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----GLIADFNGEEVVANLPIFS------PEEI----   68 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----CEEEEETTEEEEECCCEEC------GGGC----
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----CEEEEeCCCeeEecceeec------chhh----
Confidence            4688888876 3 22334555554 699999999877665533    211000 000000000000      0000    


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                             ...-..+|+|+...+......+++.+...++++..++..
T Consensus        69 -------~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           69 -------DHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             -------CTTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             -------cccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEe
Confidence                   001126899999888777788888888899988776654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=83.90  E-value=4.4  Score=36.02  Aligned_cols=98  Identities=20%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             CCCcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcc-----------eEEEecCCCCCcc
Q 041459           58 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM-----------KLHLVPDRTFPAS  124 (225)
Q Consensus        58 ~~~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  124 (225)
                      ..++|.=+|+|. | .++..+++.|. +|+++|++++.++..++..  ..+....+           .+.+...      
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~--~~i~e~gl~~~l~~~~~~~~l~~ttd------   77 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGG--VPIHEPGLKEVIARNRSAGRLRFSTD------   77 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTC--CSSCCTTHHHHHHHHHHTTCEEEECC------
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCC--CCcCCCCHHHHHHHhcccCCEEEECC------
Confidence            457888898886 3 23445666664 5999999998887765431  11100000           0111000      


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEeccch----------hHHHHHHHHHHHhccCCeEEEEe
Q 041459          125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILL----------NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                          ...              .-...|+|+...+-          ......++.+...|++|.+++..
T Consensus        78 ----~~~--------------a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           78 ----IEA--------------AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             ----HHH--------------HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             ----HHH--------------HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence                000              01246888887554          56777888899999998877653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=83.78  E-value=6.3  Score=34.61  Aligned_cols=41  Identities=32%  Similarity=0.347  Sum_probs=26.8

Q ss_pred             CCCcEEEEcccccHH--HHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459           58 GGELFLDYGTGSGIL--GIAAIKFGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~--~~~l~~~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      .|.++-=+|+|.=.+  +..+++.| .+|+++|++++.++..++
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G-~~V~~~D~~~~kv~~L~~   52 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHG-VDVLGVDINQQTIDKLQN   52 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHT
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHC
Confidence            456666677776322  33456665 459999999988877654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=83.72  E-value=6.1  Score=32.08  Aligned_cols=84  Identities=20%  Similarity=0.258  Sum_probs=54.8

Q ss_pred             CcEEEEcc-cc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           60 ELFLDYGT-GS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        60 ~~vlDiGc-Gt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++|.=+|+ |. | .++..+++.+. +++++|.++..++.+.+    .++.     .  .+...                
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~----~g~~-----~--~~~~~----------------   63 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG----MGIP-----L--TDGDG----------------   63 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH----TTCC-----C--CCSSG----------------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----cCCC-----c--CCHHH----------------
Confidence            47888988 76 3 33334555554 69999999887766543    2321     1  01000                


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (225)
                               .....|+|+...+......+++.+...++++.+++
T Consensus        64 ---------~~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           64 ---------WIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             ---------GGGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ---------HhcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEE
Confidence                     12357999998887777888888888888887654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=83.67  E-value=0.74  Score=39.34  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             ccCCCcEEEEc-ccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYG-TGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiG-cGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||=.| +|. |..++.+++ .|. ++++++ ++..++.+++    .+..   . ........+       ...+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~-v~~~~~~~~-------~~~~  243 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGAD---D-VIDYKSGSV-------EEQL  243 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS---E-EEETTSSCH-------HHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCC---E-EEECCchHH-------HHHH
Confidence            55789999998 453 677776666 454 799988 6666665532    3322   1 111111111       0000


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  .....+|+++.+..-..  ..+....++++++|.++....
T Consensus       244 ------------~~~~g~D~vid~~g~~~--~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          244 ------------KSLKPFDFILDNVGGST--ETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             ------------HTSCCBSEEEESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred             ------------hhcCCCCEEEECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence                        02246999987654331  234567788999999988543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=83.56  E-value=9.2  Score=26.71  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=48.8

Q ss_pred             CCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           59 GELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +++|+=+|+|.  ++..    +.+.+ .+++++|.++..++..+..   .+     +.....+....     +.+...  
T Consensus         4 ~m~i~IiG~G~--iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~---~~-----~~~~~~d~~~~-----~~l~~~--   65 (140)
T 1lss_A            4 GMYIIIAGIGR--VGYTLAKSLSEKG-HDIVLIDIDKDICKKASAE---ID-----ALVINGDCTKI-----KTLEDA--   65 (140)
T ss_dssp             -CEEEEECCSH--HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---CS-----SEEEESCTTSH-----HHHHHT--
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHh---cC-----cEEEEcCCCCH-----HHHHHc--
Confidence            45788777754  4433    33444 5699999998776555432   12     12222222111     000000  


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (225)
                                 ....+|+|+...+.......+..+.+.+.++.+++
T Consensus        66 -----------~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           66 -----------GIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             -----------TTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             -----------CcccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence                       23468998887665544444555566677764443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=82.87  E-value=2.2  Score=35.43  Aligned_cols=47  Identities=9%  Similarity=-0.009  Sum_probs=34.4

Q ss_pred             CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHH
Q 041459          148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN  194 (225)
Q Consensus       148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  194 (225)
                      ..+|+|+...+.......++.+...+.++..++....+-.....+.+
T Consensus        68 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~  114 (312)
T 3hn2_A           68 GPMDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT  114 (312)
T ss_dssp             CCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH
T ss_pred             CCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH
Confidence            46899999888877888899999999999877765444433333433

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=82.77  E-value=2.1  Score=36.41  Aligned_cols=97  Identities=8%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             cCCCcEEEEccc--ccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTG--SGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcG--tG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++|++||=.|++  .|.+++.+++. |+ +++++. ++.-++.+++    .+..    .........+    .+.+... 
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~----~vi~~~~~~~----~~~v~~~-  227 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE----EVFDYRAPNL----AQTIRTY-  227 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS----EEEETTSTTH----HHHHHHH-
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc----EEEECCCchH----HHHHHHH-
Confidence            678999999983  47777777764 55 688875 7777776653    3322    1221111111    1111111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhc-cCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  183 (225)
                                  ..+.+|+++-+..-.   ..++.+.+.| +++|.++...
T Consensus       228 ------------t~g~~d~v~d~~g~~---~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          228 ------------TKNNLRYALDCITNV---ESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             ------------TTTCCCEEEESSCSH---HHHHHHHHHSCTTCEEEEESS
T ss_pred             ------------ccCCccEEEECCCch---HHHHHHHHHhhcCCCEEEEEe
Confidence                        233599998654332   3456677788 6999988754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=82.62  E-value=8.5  Score=33.87  Aligned_cols=112  Identities=14%  Similarity=0.105  Sum_probs=61.5

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCc-----------ceEEEecCCCCCcccc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKK-----------MKLHLVPDRTFPASMN  126 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  126 (225)
                      ++|.=+|+|. | .++..+++.| .+|+++|+++..++..++..  .......           -.+.....  .     
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G-~~V~~~D~~~~~v~~l~~g~--~~i~e~gl~~~l~~~~~~~~l~~t~d--~-----   72 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG-ANVRCIDTDRNKIEQLNSGT--IPIYEPGLEKMIARNVKAGRLRFGTE--I-----   72 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTC--SCCCSTTHHHHHHHHHHTTSEEEESC--H-----
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC-CEEEEEECCHHHHHHHHcCC--CcccCCCHHHHHHhhcccCcEEEECC--H-----
Confidence            4577777775 3 2233455555 46999999998887765421  1110000           00111100  0     


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccchh----------HHHHHHHHHHHhccCCeEEEEec-cCCCcHHHHHHH
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILLN----------PLLQLADHIVSYAKPGAVVGISG-ILSEQLPHIINR  195 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~  195 (225)
                         ..              .-...|+|+...+-.          .....++.+...|++|.+++... +.......+...
T Consensus        73 ---~e--------------a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~  135 (450)
T 3gg2_A           73 ---EQ--------------AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKA  135 (450)
T ss_dssp             ---HH--------------HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHH
T ss_pred             ---HH--------------HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHH
Confidence               00              023468888865543          67778888999999998776643 333444445444


Q ss_pred             HHh
Q 041459          196 YSE  198 (225)
Q Consensus       196 ~~~  198 (225)
                      +.+
T Consensus       136 l~~  138 (450)
T 3gg2_A          136 IQE  138 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=82.31  E-value=2.2  Score=35.96  Aligned_cols=97  Identities=15%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++||=.|+ | .|.+++.+++. +..++++++ ++.-.+.++     .+..    .... ....+    .+.+...
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~----~~~~-~~~~~----~~~~~~~  204 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT----HLFD-RNADY----VQEVKRI  204 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS----EEEE-TTSCH----HHHHHHH
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc----EEEc-CCccH----HHHHHHh
Confidence            567899999998 3 36666777764 567899988 554444433     2322    1111 11111    1111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                   ..+.+|+++-+..-.    .+..+.++|+++|.+++.+.
T Consensus       205 -------------~~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          205 -------------SAEGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             -------------CTTCEEEEEEECC-----------CTTEEEEEEEEEEC-
T ss_pred             -------------cCCCceEEEECCCch----hHHHHHHHhhcCCEEEEECC
Confidence                         245799998754332    23577889999999987654

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=82.19  E-value=3.1  Score=36.67  Aligned_cols=44  Identities=16%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             CCcEEEEcccccHHHHHHHh----cC--CCeEEEEeCCHHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIK----FG--AAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~----~~--~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      ..+|+|+|+|+|.++.-+++    .+  ..+|+.||+|+...+.-++.+.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            47999999999998776543    22  3479999999987776666654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=81.31  E-value=4.3  Score=35.24  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=30.8

Q ss_pred             CcEEEEcccccHHHHHHHhc--------CCCeEEEEeCCHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSGILGIAAIKF--------GAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~--------~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      -.|+|+|+|+|.++..+.+.        ...+|+.||+|+...+.-++.+
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            47999999999998765431        2347999999997766554443

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=81.09  E-value=1.9  Score=43.33  Aligned_cols=43  Identities=19%  Similarity=0.071  Sum_probs=37.0

Q ss_pred             CCcEEEEcccccHHHHHHHhcCC-CeEEEEeCCHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGA-AMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~-~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+++|++||.|.++.-+.+.|. ..+.++|+++.+.+.-+.|.
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~  894 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN  894 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            45899999999999998888886 56899999999988877764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=80.93  E-value=7.2  Score=31.75  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             CcEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc---------CCCCCcce-----EEEecCCCCCc
Q 041459           60 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN---------NIGPKKMK-----LHLVPDRTFPA  123 (225)
Q Consensus        60 ~~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~  123 (225)
                      ++|.=+|+|+ | .++..++..|. +|+..|.+++.++.+++.+...         ++......     +....  ..  
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~--~~--   79 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSD--DL--   79 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEES--CH--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeC--CH--
Confidence            4677788876 2 23334555664 6999999999988887654211         11100000     00000  00  


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEeccchh--HHHHHHHHHHHhccCCeEEE
Q 041459          124 SMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~~~~~l~~~~~~LkpgG~l~  180 (225)
                            ..              .-...|+|+...+-.  ....++..+...++++.+++
T Consensus        80 ------~~--------------~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~  118 (283)
T 4e12_A           80 ------AQ--------------AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA  118 (283)
T ss_dssp             ------HH--------------HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ------HH--------------HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence                  00              124579999877654  56677888888899987664

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=80.23  E-value=20  Score=28.96  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=33.6

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      +|+++|=-|++.|   .++..+++.|+ +|+.+|.+++.++.+.+.+...+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g   57 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG   57 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence            5777777776665   23334556665 59999999999888877776655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	3e-22
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	9e-09
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	1e-07
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	2e-07
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	6e-07
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	2e-06
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-06
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-06
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	6e-06
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	6e-06
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-05
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	2e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-04
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	2e-04
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	2e-04
d1booa_	320	c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA me	5e-04

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 89.2 bits (220), Expect = 3e-22
 Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 30/219 (13%)

Query: 1   ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
               P        ++  W T    +   +++ PG+AFGTG H TT+L L  L   ++ G+
Sbjct: 65  RDLKPALAPP-FVVLAPWHTWEGAE-IPLVIEPGMAFGTGHHETTRLALKALARHLRPGD 122

Query: 61  LFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
             LD GTGSG+L IAA K G    +GVDIDP  +  A  NA  N           V  R 
Sbjct: 123 KVLDLGTGSGVLAIAAEKLGGKA-LGVDIDPMVLPQAEANAKRNG----------VRPRF 171

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 180
              S+   +                    +D+++AN+       LA        PG    
Sbjct: 172 LEGSLEAALP----------------FGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

Query: 181 ISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTK 218
           ++GIL ++ P +    +      +  +   +W  ++  +
Sbjct: 216 LTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 13/173 (7%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS 96
           + T  +A ++L  L        G++  D G G+G+L   A+  GA   + V++D +A+  
Sbjct: 25  YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV 84

Query: 97  AHQNAALNNIGPKKMKLHLVPDRTFP-----ASMNERVDGIVEDLSSHEIRGISETEKYD 151
             +N         K K+ +     F        MN       +      +    E     
Sbjct: 85  LIENLGEFKG---KFKVFIGDVSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVV 141

Query: 152 VVIANILLNPLLQLADHIVSYAKP-GAVVGISGILSEQLPHIINRYSEFLEDI 203
             I         ++   I  ++   G VV        ++P     + + LE I
Sbjct: 142 YSIHLA----KPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQFFFHRKKLERI 190

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 33/174 (18%)

Query: 37  FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKS 96
           + T         + +      GG   +D GTG+GIL   +   GA      DIDP AI++
Sbjct: 27  YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 86

Query: 97  AHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
           A +N    N                       +   V ++S           KYD  I N
Sbjct: 87  AKRNCGGVNF----------------------MVADVSEIS----------GKYDTWIMN 114

Query: 157 ILLNPLLQLAD-HIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILLSEMD 209
                +++ +D   +  A   ++   S   ++    +   +S   +     ++ 
Sbjct: 115 PPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVFREEKVY 168

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 25/151 (16%)

Query: 50  LLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP 108
           L++        ++ +D G G+G + +        +   +D +P+AI +   N   + +G 
Sbjct: 24  LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRV-YAIDRNPEAISTTEMNLQRHGLGD 82

Query: 109 KKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADH 168
                               V  +  D        + +    D+ +       L ++   
Sbjct: 83  -------------------NVTLMEGDA----PEALCKIPDIDIAVVGGSGGELQEILRI 119

Query: 169 IVSYAKPGAVVGISGILSEQLPHIINRYSEF 199
           I    KPG  + ++ IL E     +    + 
Sbjct: 120 IKDKLKPGGRIIVTAILLETKFEAMECLRDL 150

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 16/169 (9%)

Query: 56  IKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH 114
           +K G+ F+D G+G G  +  AA++ G A+S G +I   A               K   + 
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273

Query: 115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVSY 172
           L              + + E +              DV++ N  L    L +  + I+  
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQ-----------CDVILVNNFLFDEDLNKKVEKILQT 322

Query: 173 AKPGAVVGISGILSEQLPHIINRYSEFLEDIL-LSEMDDWT-CVSGTKK 219
           AK G  +     L      I     E + + L +   D     VS T  
Sbjct: 323 AKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHS 371

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 6   VEVTKGL--WIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFL 63
           +EV +G    ++P+      +  + +  NP +A          + ++LL  L    ++ L
Sbjct: 2   IEVQEGKAKILIPK---AESIYDSPVFYNPRMALNR------DIVVVLLNIL--NPKIVL 50

Query: 64  DYGTGSGILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP 122
           D  + +GI GI  A++  A      DI   A +   +N  LN  G       L   +   
Sbjct: 51  DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDG------ELRESKGRA 104

Query: 123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
               E+   I  D ++  +        +  +  +
Sbjct: 105 ILKGEKTIVINHDDANRLMA--ERHRYFHFIDLD 136

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 16/75 (21%), Positives = 28/75 (37%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHL 115
           I   ++ LD G G+GIL + A K GA   +GVD      ++              +    
Sbjct: 33  IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK 92

Query: 116 VPDRTFPASMNERVD 130
           + +   P    + + 
Sbjct: 93  IEEVHLPVEKVDVII 107

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 21/200 (10%)

Query: 31  LNPGLAFGTGEHATTKLCLL--LLQSL-IKGGELFLDYGTGSGILGI-AAIKFGAAMSVG 86
           LN    F    +  T   L+  ++  + +   +LF+D G+G G + +  A         G
Sbjct: 121 LNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYG 180

Query: 87  VDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISE 146
           V+      K A           K                +        D  S E R    
Sbjct: 181 VEKADIPAKYAETMDREFRKWMKWYGKK-----------HAEYTLERGDFLSEEWR--ER 227

Query: 147 TEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY-SEFLEDI 203
                V+  N       +        +  K G  +  S   +     I +R  S+    +
Sbjct: 228 IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIM 287

Query: 204 LLSEMDDWTC-VSGTKKRAK 222
            + E+      VS T K   
Sbjct: 288 RVVELSPLKGSVSWTGKPVS 307

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 17/171 (9%)

Query: 42  HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA 101
               +            G+  +D G+G  I  + A           D   +  +   +  
Sbjct: 35  KFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL 94

Query: 102 ALNNIGPKKMK-----LHLVPDRTFPASMNERVDGIVEDLSSHEIRG-----ISETEKYD 151
                             L  +        E++   V+ +   ++        +     D
Sbjct: 95  KKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLAD 154

Query: 152 VVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 195
            V+  + +               ++ S  KPG  +  +  L      +  R
Sbjct: 155 CVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 205

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 16/78 (20%), Positives = 28/78 (35%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHL 115
           +   ++ LD G G+GIL + A K GA   +GVD+      +              +    
Sbjct: 36  LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGK 95

Query: 116 VPDRTFPASMNERVDGIV 133
           + D   P    + +    
Sbjct: 96  LEDVHLPFPKVDIIISEW 113

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 27/153 (17%)

Query: 52  LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM 111
           +  + K  EL +D   G G L +    +G A  + ++ DP   K   +N  LN       
Sbjct: 101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK------ 154

Query: 112 KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS 171
                        + +R+     D      R        D ++   ++     +    +S
Sbjct: 155 -------------VEDRMSAYNMD-----NRDFPGENIADRILMGYVVRTHEFI-PKALS 195

Query: 172 YAKPGAVVGISGILSEQLPHIINRYSEFLEDIL 204
            AK GA++     + E    +     E  + I 
Sbjct: 196 IAKDGAIIHYHNTVPE--KLMPREPFETFKRIT 226

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 28/163 (17%)

Query: 2   SFHPVEVTKGLWI-----VPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLI 56
           +    E   G W      + E + P  +     +         G      +    L++ +
Sbjct: 69  TGDTDEDGMGRWRFPKEALGE-TWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV 127

Query: 57  KG---GELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL 113
           +        L+    +G+  + A   GA +   VD   +AI  A +N  L  +    ++ 
Sbjct: 128 ETADRPLKVLNLFGYTGVASLVAAAAGAEV-THVDASKKAIGWAKENQVLAGLEQAPIRW 186

Query: 114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIAN 156
                               ED      R       YD+++ +
Sbjct: 187 I------------------CEDAMKFIQREERRGSTYDIILTD 211

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 56  IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKM 111
           +   ++ LD G+G+GIL + A K GA   +G++    +  +     A        +
Sbjct: 31  LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTI 86

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 22/59 (37%)

Query: 50  LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP 108
            L++   K G+  LD G G G   +   + G     GVDI   +I  A   A       
Sbjct: 16  CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 74

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 18/97 (18%)

Query: 62  FLDYGTGSGILGIA-AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 120
            +D GTG+  +             +  ++D      A +N   NN+      + +     
Sbjct: 65  GIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124

Query: 121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANI 157
              ++ E  +                   YD  + N 
Sbjct: 125 LMDALKEESEI-----------------IYDFCMCNP 144

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} Length = 320

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 10  KGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTK---LCLLLLQSLIKGGELFLDYG 66
            G  I P      + ++    L      G   H       L    ++ L +  +L +D  
Sbjct: 199 NGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAKLPEFFIRMLTEPDDLVVDIF 258

Query: 67  TGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK 112
            GS   G+ A +      +  ++ P+ + ++      NNI  +K+ 
Sbjct: 259 GGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNNISEEKIT 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.79
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.77
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.75
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.72
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.71
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.71
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.71
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.7
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.69
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.69
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.66
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.66
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.65
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.65
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.64
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.62
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.62
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.61
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.61
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.6
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.59
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.59
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.58
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.58
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.57
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.55
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.54
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.54
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.54
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.53
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.53
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.53
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.51
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.51
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.5
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.5
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.5
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.49
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.48
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.47
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.46
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.46
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.46
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.46
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.46
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.45
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.45
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.44
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.43
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.42
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.42
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.41
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.41
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.4
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.37
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.34
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.33
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.32
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.29
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.27
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.27
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.24
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.24
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.2
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.19
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.11
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.09
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.09
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.08
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.04
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.92
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.89
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.86
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.86
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.85
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.84
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.82
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.77
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.73
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.72
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.71
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.64
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.6
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.58
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.57
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.54
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.47
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.39
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.28
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.11
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.07
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.06
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.95
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.91
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.72
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.7
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.5
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.5
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.45
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.45
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.43
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.41
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.28
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.1
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.92
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.89
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.85
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.83
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.82
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.72
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.62
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.58
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.58
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.44
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.37
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.3
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.2
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.06
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.78
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.43
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.12
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.92
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.83
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.66
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.23
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.22
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.19
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.7
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.42
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.6
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.2
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.1
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	92.0
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.82
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.4
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.19
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.16
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.83
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	88.54
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.95
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.31
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	87.21
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	86.89
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.86
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	86.85
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.54
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.26
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.28
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.08
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	84.95
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	84.04
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	83.25
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	83.07
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	82.72
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.5
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.41
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	81.76
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	81.16
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	80.65

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.2e-34  Score=237.42  Aligned_cols=188  Identities=28%  Similarity=0.489  Sum_probs=158.7

Q ss_pred             CCCceeecCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCC
Q 041459            2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGA   81 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~   81 (225)
                      +|+|+.++. .++.|+|+++. .....|.++|+|+||||.|+++++++++|....++|++|||+|||+|.+++.+++.+ 
T Consensus        66 ~~~p~~~~~-~~v~~~~~~~~-~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g-  142 (254)
T d2nxca1          66 DLKPALAPP-FVVLAPWHTWE-GAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG-  142 (254)
T ss_dssp             HCCCEEETT-EEEECTTCCCC-SSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT-
T ss_pred             hCCCEEECC-EEEEeccccCC-CcceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcC-
Confidence            699999975 67889999864 456999999999999999999999999999888899999999999999999988887 


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH
Q 041459           82 AMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus        82 ~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                      .+++|+|+|+.+++.|++|+..+++..   .+...+...          ..             +.++||+|++|...+.
T Consensus       143 ~~V~gvDis~~av~~A~~na~~n~~~~---~~~~~d~~~----------~~-------------~~~~fD~V~ani~~~~  196 (254)
T d2nxca1         143 GKALGVDIDPMVLPQAEANAKRNGVRP---RFLEGSLEA----------AL-------------PFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CEEEEEESCGGGHHHHHHHHHHTTCCC---EEEESCHHH----------HG-------------GGCCEEEEEEECCHHH
T ss_pred             CEEEEEECChHHHHHHHHHHHHcCCce---eEEeccccc----------cc-------------cccccchhhhcccccc
Confidence            469999999999999999999998763   333332111          01             4578999999999999


Q ss_pred             HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeee
Q 041459          162 LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTK  218 (225)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k  218 (225)
                      +..+++.+.+.|||||+++++++..++...+.+.+++. |..++..+.++|.++.++|
T Consensus       197 l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEECCEEEEEEeC
Confidence            99999999999999999999999888899999998876 8888888999999999886

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.79  E-value=2.4e-18  Score=136.10  Aligned_cols=163  Identities=18%  Similarity=0.232  Sum_probs=112.3

Q ss_pred             EEecccceecC-CCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459           29 IILNPGLAFGT-GEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG  107 (225)
Q Consensus        29 ~~~~~~~~f~~-~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~  107 (225)
                      +...|++ |+. +....++.+++.+.  ..++++|||+|||+|.+++.+++.+ .+++++|+|+.+++.|++|+..+++.
T Consensus        25 ~~t~~gv-F~~~~~d~~t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~  100 (194)
T d1dusa_          25 FKTDSGV-FSYGKVDKGTKILVENVV--VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLD  100 (194)
T ss_dssp             EEEETTS-TTTTSCCHHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             EEcCCCc-cCCCCcCHHHHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCc
Confidence            3334553 322 23334444444432  3468999999999999999988764 57999999999999999999999887


Q ss_pred             CCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH----HHHHHHHHHHhccCCeEEEEec
Q 041459          108 PKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +..+.+...+....                       .++++||+|++|+|++.    ...+++.+.+.|||||.+++..
T Consensus       101 ~~~i~~~~~d~~~~-----------------------~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         101 NYDIRVVHSDLYEN-----------------------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             TSCEEEEECSTTTT-----------------------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEEEEcchhhh-----------------------hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence            65666655544221                       05678999999999754    3567899999999999998864


Q ss_pred             cCCCcHHHHHHHHHhhhhhhc-ccccCCceEEEeee
Q 041459          184 ILSEQLPHIINRYSEFLEDIL-LSEMDDWTCVSGTK  218 (225)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k  218 (225)
                      ........+...+...+..++ ....+.|..+..+|
T Consensus       158 ~~~~~~~~~~~~l~~~f~~~~~~~~~~gf~vl~a~K  193 (194)
T d1dusa_         158 QTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             ESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred             eCcCCHHHHHHHHHHhCCcEEEEEecCCcEEEEEEE
Confidence            444444455555555554333 34456676665554

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=7.5e-18  Score=136.48  Aligned_cols=113  Identities=13%  Similarity=0.226  Sum_probs=92.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +++|.+|||+|||+|.++..+++.+ .+++|+|+|+.|++.|++++..+++.+  +.+...+...++.            
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~--~~~~~~d~~~~~~------------   78 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVEN--VRFQQGTAESLPF------------   78 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCS--EEEEECBTTBCCS------------
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccc--ccccccccccccc------------
Confidence            6789999999999999999999876 579999999999999999998887753  6677666655432            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccCCCcHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSEQLPHII  193 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  193 (225)
                                ++++||+|+|...+++   +..+++++.++|||||+++++++.....+.+.
T Consensus        79 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~  129 (234)
T d1xxla_          79 ----------PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLD  129 (234)
T ss_dssp             ----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH
T ss_pred             ----------cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHH
Confidence                      5789999999888765   67889999999999999999766554444333

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=4.5e-18  Score=133.68  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=103.6

Q ss_pred             chHHHHHHHHHh--hccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459           43 ATTKLCLLLLQS--LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  120 (225)
Q Consensus        43 ~~~~~~~~~L~~--~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  120 (225)
                      ++...+..++..  .++++.+|||+|||+|.+++.+++. ..+++|+|+++.+++.|++|++.+++. +++++...+...
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~-~~v~~~~gda~~   93 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPE   93 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCC-cceEEEECchhh
Confidence            355445444332  2668999999999999999998876 468999999999999999999999986 356666554322


Q ss_pred             CCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                      ..                      .....||.|+++.+..+..++++.+.+.|||||.+++.+...+....+.+.++..
T Consensus        94 ~~----------------------~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~  150 (186)
T d1l3ia_          94 AL----------------------CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL  150 (186)
T ss_dssp             HH----------------------TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred             cc----------------------cccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHc
Confidence            10                      1457899999999888889999999999999999999877666666666666654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.74  E-value=2.9e-17  Score=132.09  Aligned_cols=105  Identities=20%  Similarity=0.219  Sum_probs=87.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++++|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++...+..  ++.+...+...++.            
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~--~i~~~~~d~~~l~~------------   77 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPF------------   77 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCS------------
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhcccccccc--cccccccccccccc------------
Confidence            5678999999999999999998886 47999999999999999999887765  36777777665532            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ++++||+|+|...+++   +..++.++.++|||||++++.++.
T Consensus        78 ----------~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          78 ----------TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             ----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ----------cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence                      5788999999888765   567899999999999999986554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.72  E-value=6.8e-17  Score=130.07  Aligned_cols=119  Identities=17%  Similarity=0.182  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCC
Q 041459           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  121 (225)
Q Consensus        45 ~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~---~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  121 (225)
                      ...+..++....+++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|++++...+.. ..+.....+...+
T Consensus        26 ~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~-~~~~~~~~d~~~~  104 (225)
T d1im8a_          26 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHV  104 (225)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS-SCEEEECSCTTTC
T ss_pred             HHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc-chhhhccchhhcc
Confidence            34444555556778899999999999999998873   5678999999999999999998765543 2333333333222


Q ss_pred             CccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccCCCc
Q 041459          122 PASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQ  188 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~  188 (225)
                                              +...+|+|+++..+++     ...+++++++.|||||.+++.+.....
T Consensus       105 ------------------------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~  152 (225)
T d1im8a_         105 ------------------------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE  152 (225)
T ss_dssp             ------------------------CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred             ------------------------ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence                                    4567899999776644     567899999999999999998765433

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.8e-16  Score=129.64  Aligned_cols=151  Identities=16%  Similarity=0.197  Sum_probs=111.9

Q ss_pred             cceeEEecccceecCCCCchHHHHHH-HHHhhccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLL-LLQSLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~L~~~~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+..+.++|+.-.   ++|.+..+.+ .+......+.+|||+|||+|.+++.++. .+..+++++|+|+.+++.|++|+.
T Consensus        77 ~~~~~~v~~~VlI---PRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1          77 WSLPLFVSPATLI---PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             TTEEEECCTTSCC---CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             eeeEEEEeccccc---cccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH
Confidence            4566777888443   5555554444 4555555677899999999999998765 678899999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchh----------------------
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN----------------------  160 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~----------------------  160 (225)
                      .+++.+  +.+..  ++.+.        .+             ...+||+|++|||+-                      
T Consensus       154 ~~~~~~--v~~~~--~d~~~--------~~-------------~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~  208 (274)
T d2b3ta1         154 HLAIKN--IHILQ--SDWFS--------AL-------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVA  208 (274)
T ss_dssp             HHTCCS--EEEEC--CSTTG--------GG-------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBC
T ss_pred             HhCccc--ceeee--ccccc--------cc-------------CCCceeEEEecchhhhhhhhcccccccccchhhhccc
Confidence            998753  44443  33331        11             456899999999962                      


Q ss_pred             ------HHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459          161 ------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  204 (225)
Q Consensus       161 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (225)
                            .+..+++.+.++|+|||.+++ +++.++...+.+.+... |..++
T Consensus       209 g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~~q~~~v~~~l~~~gf~~i~  258 (274)
T d2b3ta1         209 ADSGMADIVHIIEQSRNALVSGGFLLL-EHGWQQGEAVRQAFILAGYHDVE  258 (274)
T ss_dssp             HHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCSSCHHHHHHHHHHTTCTTCC
T ss_pred             ccccchHHHHHHHHHHHhcCCCCEEEE-EECchHHHHHHHHHHHCCCCeEE
Confidence                  145688999999999999998 56677777787777655 65444

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.71  E-value=7.7e-17  Score=136.65  Aligned_cols=160  Identities=11%  Similarity=0.030  Sum_probs=123.3

Q ss_pred             CCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+.+..+.+++...++||.+..++.....+.....+|++|||++||+|.++++++..|+.+|+++|+++.+++.|++|+.
T Consensus       109 ~E~Gl~f~vdl~~g~ktGlflDqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~  188 (317)
T d2b78a2         109 LENGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE  188 (317)
T ss_dssp             EETTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH
T ss_pred             eeCCEEEEEEcccccccCCcHHHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH
Confidence            45778889999988899998888877676656566799999999999999999999899999999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHH
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIV  170 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~  170 (225)
                      .|++..+++.+...+.-       +.+....           ....+||+|+++||.            ..+.+++..+.
T Consensus       189 ~n~l~~~~~~~i~~d~~-------~~l~~~~-----------~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~  250 (317)
T d2b78a2         189 ANHLDMANHQLVVMDVF-------DYFKYAR-----------RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGL  250 (317)
T ss_dssp             HTTCCCTTEEEEESCHH-------HHHHHHH-----------HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHH
T ss_pred             HhcccCcceEEEEccHH-------HHHHHHH-----------hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHH
Confidence            99987666666654431       1111110           035689999999983            23667899999


Q ss_pred             HhccCCeEEEEecc-CCCcHHHHHHHHHhhh
Q 041459          171 SYAKPGAVVGISGI-LSEQLPHIINRYSEFL  200 (225)
Q Consensus       171 ~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~~  200 (225)
                      ++|+|||.+++++. ..-...++.....+.+
T Consensus       251 ~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~  281 (317)
T d2b78a2         251 EILSENGLIIASTNAANMTVSQFKKQIEKGF  281 (317)
T ss_dssp             HTEEEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHcCCCCEEEEEeCCccCCHHHHHHHHHHHH
Confidence            99999999998644 3445555655555443

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5.9e-17  Score=132.04  Aligned_cols=118  Identities=19%  Similarity=0.188  Sum_probs=94.5

Q ss_pred             chHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q 041459           43 ATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  120 (225)
Q Consensus        43 ~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  120 (225)
                      |.+...+..|...  +.+|++|||+|||+|.++..+++....+++|+|+|+.+++.|+++....++. +++.+...+...
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~-~~v~~~~~d~~~   94 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAG   94 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTT
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc-ccchhhhhHHhh
Confidence            4444555555444  6689999999999999999988764467999999999999999999988876 467777766544


Q ss_pred             CCccccccccccccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      +.                       .+++||+|++...+++   +..+++++.+.|||||.+++.+.
T Consensus        95 ~~-----------------------~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          95 YV-----------------------ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             CC-----------------------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             cc-----------------------ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            31                       5678999999877765   47789999999999999998644

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=1.3e-16  Score=127.30  Aligned_cols=109  Identities=23%  Similarity=0.237  Sum_probs=85.8

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      .++...++++.+|||+|||+|.++..+++.+ .+++|+|+|+.|++.|+++....+..   +.....+...++.      
T Consensus        29 ~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~---~~~~~~d~~~l~~------   98 (226)
T d1ve3a1          29 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESN---VEFIVGDARKLSF------   98 (226)
T ss_dssp             HHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCC---CEEEECCTTSCCS------
T ss_pred             HHHHHhcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhcccccc---ccccccccccccc------
Confidence            3444456678899999999999999999875 46999999999999999988766543   4455555554432      


Q ss_pred             cccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                      ++++||+|++...+++     +..+++++.++|||||.+++...
T Consensus        99 ----------------~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          99 ----------------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             ----------------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------------cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence                            5688999999877764     45689999999999999988643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.7e-16  Score=134.97  Aligned_cols=154  Identities=23%  Similarity=0.300  Sum_probs=115.6

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      .+..+..+.. ...+|.+..++....++...+++|++|||+|||+|.+++.+++.|+.+|+++|+++.+++.|++|+..|
T Consensus       113 ~~~~~~~~~~-~~~tG~flDqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~n  191 (324)
T d2as0a2         113 GRAKFIVDMR-GQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN  191 (324)
T ss_dssp             TTEEEEEESS-SSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEeccc-ccccCcccchhhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHc
Confidence            3444444443 457889999999999998888889999999999999999999988889999999999999999999999


Q ss_pred             CCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHHh
Q 041459          105 NIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVSY  172 (225)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~~  172 (225)
                      ++. .++++...+.  +     +....+.           ....+||+|++++|.            ..+.+++..+.++
T Consensus       192 gl~-~~~~~~~~d~--~-----~~~~~~~-----------~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~l  252 (324)
T d2as0a2         192 GVE-DRMKFIVGSA--F-----EEMEKLQ-----------KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL  252 (324)
T ss_dssp             TCG-GGEEEEESCH--H-----HHHHHHH-----------HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT
T ss_pred             CCC-ccceeeechh--h-----hhhHHHH-----------hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            986 3455554432  1     1111110           045789999999984            2366788999999


Q ss_pred             ccCCeEEEEec-cCCCcHHHHHHHHHh
Q 041459          173 AKPGAVVGISG-ILSEQLPHIINRYSE  198 (225)
Q Consensus       173 LkpgG~l~~~~-~~~~~~~~~~~~~~~  198 (225)
                      |+|||.+++++ -..-...++.+...+
T Consensus       253 l~pGG~lv~~s~s~~~~~~~f~~~v~~  279 (324)
T d2as0a2         253 VKDGGILVTCSCSQHVDLQMFKDMIIA  279 (324)
T ss_dssp             EEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCccCCHHHHHHHHHH
Confidence            99999988753 344455555555543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.69  E-value=1.8e-16  Score=131.78  Aligned_cols=106  Identities=16%  Similarity=0.174  Sum_probs=89.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++....++. +++.+...+...++.            
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~-~~v~~~~~d~~~l~~------------  131 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPC------------  131 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSS------------
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc-ccccccccccccccc------------
Confidence            4578999999999999999988754457999999999999999999888886 467777777766543            


Q ss_pred             cccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ++++||+|++...+++   ...++.++.++|||||.+++.++
T Consensus       132 ----------~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         132 ----------EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             ----------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence                      5688999999877755   56789999999999999998654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.66  E-value=4.6e-16  Score=127.34  Aligned_cols=110  Identities=20%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             HhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           53 QSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        53 ~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ....+++++|||+|||+|..+..+++.+..+|+|+|+|+.|++.|+++....+.. ..+.+...+....+.         
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~---------   88 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHM---------   88 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCC---------
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC-cceEEEEcchhhhcc---------
Confidence            4446688999999999999999888888888999999999999999887765543 245555555432211         


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  ....+||+|+|+..+++       ...++..+.+.|||||+++++..
T Consensus        89 ------------~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          89 ------------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             ------------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ------------cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence                        13568999999887765       35689999999999999988644

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=1.2e-15  Score=127.19  Aligned_cols=130  Identities=12%  Similarity=0.083  Sum_probs=95.6

Q ss_pred             EecccceecCCCCch--------HHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Q 041459           30 ILNPGLAFGTGEHAT--------TKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQ   99 (225)
Q Consensus        30 ~~~~~~~f~~~~~~~--------~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~   99 (225)
                      -+++.|.|+++.++.        +....+.+.+.  +++|++|||+|||.|.++..+++....+|+|+|+|+.+++.|++
T Consensus        14 ~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          14 FQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             TSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHH
Confidence            357777776655532        12222222222  56899999999999999999887634589999999999999999


Q ss_pred             HHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhcc
Q 041459          100 NAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAK  174 (225)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lk  174 (225)
                      ++...++. ..+.....+...                         .+++||.|++..++++     +..+++.+.++||
T Consensus        94 ~~~~~~l~-~~~~~~~~d~~~-------------------------~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk  147 (280)
T d2fk8a1          94 VLASIDTN-RSRQVLLQGWED-------------------------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP  147 (280)
T ss_dssp             HHHTSCCS-SCEEEEESCGGG-------------------------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC
T ss_pred             HHHhhccc-cchhhhhhhhhh-------------------------hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC
Confidence            99888875 344444433222                         3568999999877765     4678999999999


Q ss_pred             CCeEEEEeccC
Q 041459          175 PGAVVGISGIL  185 (225)
Q Consensus       175 pgG~l~~~~~~  185 (225)
                      |||.+++..+.
T Consensus       148 pgG~~~i~~i~  158 (280)
T d2fk8a1         148 ADGRMTVQSSV  158 (280)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCceEEEEEee
Confidence            99999986543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=1.4e-15  Score=127.30  Aligned_cols=130  Identities=11%  Similarity=0.072  Sum_probs=97.1

Q ss_pred             ecccceecCCCCc--------hHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           31 LNPGLAFGTGEHA--------TTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        31 ~~~~~~f~~~~~~--------~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      +++.|.|+++.++        .+...++.+.+.  +++|.+|||+|||.|.++..+++....+++|+++|++.++.|+++
T Consensus        24 Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~  103 (291)
T d1kpia_          24 LDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAM  103 (291)
T ss_dssp             SCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred             cCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHH
Confidence            5677766666553        112222333222  668999999999999999998864335799999999999999999


Q ss_pred             HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------------HHHHHHH
Q 041459          101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------LLQLADH  168 (225)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------~~~~l~~  168 (225)
                      +...++. +.+.+...+...                         .+++||.|++..++++            +..+++.
T Consensus       104 ~~~~~l~-~~v~~~~~d~~~-------------------------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~  157 (291)
T d1kpia_         104 FDEVDSP-RRKEVRIQGWEE-------------------------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKK  157 (291)
T ss_dssp             HHHSCCS-SCEEEEECCGGG-------------------------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHH
T ss_pred             HHhhccc-hhhhhhhhcccc-------------------------cccccceEeechhHHhcchhhhhhHHHHHHHHHHH
Confidence            9988876 455555443221                         4678999999887765            4689999


Q ss_pred             HHHhccCCeEEEEeccCC
Q 041459          169 IVSYAKPGAVVGISGILS  186 (225)
Q Consensus       169 ~~~~LkpgG~l~~~~~~~  186 (225)
                      +.++|||||.+++..+..
T Consensus       158 i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         158 FYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             HHHTSCTTCEEEEEEEEC
T ss_pred             HHHhCCCCCceEEEEEec
Confidence            999999999999976643

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.2e-16  Score=124.61  Aligned_cols=125  Identities=16%  Similarity=0.150  Sum_probs=92.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|++++...+..  .+.+...+...++.              
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~--~~~f~~~d~~~~~~--------------  123 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR--VRNYFCCGLQDFTP--------------  123 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG--EEEEEECCGGGCCC--------------
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc--cccccccccccccc--------------
Confidence            56799999999999999887666678999999999999999998766543  34555555443321              


Q ss_pred             cccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccCCC--------------cHHHHHHHHHh
Q 041459          138 SHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSE--------------QLPHIINRYSE  198 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~~~  198 (225)
                              +.++||+|++...++++     ..+++++.+.|||||.+++.+....              ....+.+.+.+
T Consensus       124 --------~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  195 (222)
T d2ex4a1         124 --------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICS  195 (222)
T ss_dssp             --------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHH
T ss_pred             --------ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHH
Confidence                    56789999998887653     4689999999999999998644321              34556666655


Q ss_pred             h-hhhhccc
Q 041459          199 F-LEDILLS  206 (225)
Q Consensus       199 ~-~~~~~~~  206 (225)
                      . |+.+...
T Consensus       196 aGf~ii~~~  204 (222)
T d2ex4a1         196 AGLSLLAEE  204 (222)
T ss_dssp             TTCCEEEEE
T ss_pred             cCCEEEEEE
Confidence            4 5544433

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.8e-15  Score=128.14  Aligned_cols=155  Identities=17%  Similarity=0.196  Sum_probs=113.5

Q ss_pred             CCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           22 PDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ..+.+..+.+++.....||.+..++....++...  +|++|||+|||+|.+++.++. +..+|+++|+|+.+++.|++|+
T Consensus       111 v~E~G~~f~v~l~~~~~tG~flDqr~~r~~~~~~--~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~  187 (318)
T d1wxxa2         111 VQEGRVRYLVDLRAGQKTGAYLDQRENRLYMERF--RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENA  187 (318)
T ss_dssp             EEETTEEEEEECSTTSCCCCCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHH
T ss_pred             EEECCEEEEEechhccccccchhhhhhHHHHHHh--CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHH
Confidence            3456788888888778889888888776655433  689999999999999998876 4568999999999999999999


Q ss_pred             HhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch------------hHHHHHHHHH
Q 041459          102 ALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHI  169 (225)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~  169 (225)
                      ..+++.+  +.+...+...       ....+.           ...++||+|++++|.            ..+.+++..+
T Consensus       188 ~~ngl~~--~~~i~~d~~~-------~~~~~~-----------~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a  247 (318)
T d1wxxa2         188 RLNGLGN--VRVLEANAFD-------LLRRLE-----------KEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRA  247 (318)
T ss_dssp             HHTTCTT--EEEEESCHHH-------HHHHHH-----------HTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHH
T ss_pred             HHcCCCC--cceeeccHHH-------HhhhhH-----------hhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHH
Confidence            9999864  4444433211       111110           045789999999883            2356788999


Q ss_pred             HHhccCCeEEEEe-ccCCCcHHHHHHHHHhh
Q 041459          170 VSYAKPGAVVGIS-GILSEQLPHIINRYSEF  199 (225)
Q Consensus       170 ~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~  199 (225)
                      .++|||||.++++ |...-...++.+.+.+.
T Consensus       248 ~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a  278 (318)
T d1wxxa2         248 IKLLKEGGILATASCSHHMTEPLFYAMVAEA  278 (318)
T ss_dssp             HHTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEEEeCCcccCHHHHHHHHHHH
Confidence            9999999998875 43444555565555543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=1.4e-15  Score=119.96  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=83.4

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .+.+|||+|||+|..+..+++.+. +++|+|+|+.+++.|+++....++.+  +.+...+...+.               
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~d~~~~~---------------   91 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDN--LQTDLVDLNTLT---------------   91 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTT--EEEEECCTTTCC---------------
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccc--hhhhheeccccc---------------
Confidence            356999999999999999998865 69999999999999999988887753  566666654432               


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              .++.||+|+++..+++     ...+++.+.++|+|||++++.++
T Consensus        92 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          92 --------FDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             --------CCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --------ccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                    4678999999887765     45789999999999999988644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=2.8e-15  Score=121.69  Aligned_cols=99  Identities=20%  Similarity=0.282  Sum_probs=79.8

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++++|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++....+..   +.+...+...++              
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~---i~~~~~d~~~l~--------------  101 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK---IEFLQGDVLEIA--------------  101 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC---CEEEESCGGGCC--------------
T ss_pred             CCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccccccccccc---chheehhhhhcc--------------
Confidence            3567899999999999999999875 6999999999999999998877653   567766655442              


Q ss_pred             ccccccCCCCCCceeEEEecc-ch-----hHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANI-LL-----NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~-~~-----~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ..++||+|+|.. .+     ......++++++.|||||++++.
T Consensus       102 ---------~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         102 ---------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             ---------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence                     346899999853 32     23567899999999999999885

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.62  E-value=2e-15  Score=122.75  Aligned_cols=106  Identities=14%  Similarity=0.064  Sum_probs=80.7

Q ss_pred             HHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccc
Q 041459           50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERV  129 (225)
Q Consensus        50 ~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (225)
                      +.+.....++++|||+|||+|.++..+++.+. +++|+|.|+.|++.|+++....+..   +.+...+...++       
T Consensus        29 ~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~---v~~~~~d~~~~~-------   97 (246)
T d1y8ca_          29 EKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK---PRLACQDISNLN-------   97 (246)
T ss_dssp             HHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCC---CEEECCCGGGCC-------
T ss_pred             HHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCcc---ceeeccchhhhc-------
Confidence            33333334568999999999999999999875 6999999999999999998877653   555555443331       


Q ss_pred             cccccccccccccCCCCCCceeEEEec-cch------hHHHHHHHHHHHhccCCeEEEEe
Q 041459          130 DGIVEDLSSHEIRGISETEKYDVVIAN-ILL------NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~DvIi~~-~~~------~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                      ..++||+|+|. ..+      ..+..+++.+++.|||||.+++.
T Consensus        98 ----------------~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          98 ----------------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             ----------------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ----------------ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                            35689999983 222      23567899999999999999974

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=1.8e-15  Score=124.81  Aligned_cols=134  Identities=20%  Similarity=0.293  Sum_probs=102.3

Q ss_pred             CCCcceeEEecccc-eecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           22 PDVQATNIILNPGL-AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        22 ~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      ..+.++.+.+++.. .|..+.    ..-...+...+++|.+|||+|||+|.+++.+++.+..+|+++|++|.+++.+++|
T Consensus        74 ~~E~g~~~~~d~~~~~f~~~~----~~er~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N  149 (260)
T d2frna1          74 HVENGIKYKLDVAKIMFSPAN----VKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVEN  149 (260)
T ss_dssp             EEETTEEEEEETTTSCCCGGG----HHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHH
T ss_pred             EEecCeeEEeccccccEecCC----HHHHHHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHH
Confidence            44677888888874 333322    2222345556778999999999999999999988888999999999999999999


Q ss_pred             HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEE
Q 041459          101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (225)
                      +..|++. +++.+..+|...+.                       ....||.|++++|... ..++..+.+.|++||++.
T Consensus       150 ~~~n~l~-~~v~~~~~D~~~~~-----------------------~~~~~D~Ii~~~p~~~-~~~l~~a~~~l~~gG~lh  204 (260)
T d2frna1         150 IHLNKVE-DRMSAYNMDNRDFP-----------------------GENIADRILMGYVVRT-HEFIPKALSIAKDGAIIH  204 (260)
T ss_dssp             HHHTTCT-TTEEEECSCTTTCC-----------------------CCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEE
T ss_pred             HHHhCCC-ceEEEEEcchHHhc-----------------------cCCCCCEEEECCCCch-HHHHHHHHhhcCCCCEEE
Confidence            9999987 46777766654442                       4568999999877532 345677888999999987


Q ss_pred             Eecc
Q 041459          181 ISGI  184 (225)
Q Consensus       181 ~~~~  184 (225)
                      +.++
T Consensus       205 ~~~~  208 (260)
T d2frna1         205 YHNT  208 (260)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6544

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=3.9e-15  Score=119.98  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=78.9

Q ss_pred             HHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        51 ~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      .+.....++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++..    .    .....+.+.++.       
T Consensus        35 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~----~----~~~~~~~~~l~~-------   98 (246)
T d2avna1          35 FLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----K----NVVEAKAEDLPF-------   98 (246)
T ss_dssp             HHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----S----CEEECCTTSCCS-------
T ss_pred             HHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc----c----cccccccccccc-------
Confidence            3444566788999999999999999998865 69999999999999987632    1    133444444422       


Q ss_pred             ccccccccccccCCCCCCceeEEEecc-chhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANI-LLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~-~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                     ++++||+|++.. .+++   ...+++++.++|||||+++++..
T Consensus        99 ---------------~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          99 ---------------PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             ---------------CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------------ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence                           578899999854 4553   56789999999999999998653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.60  E-value=9.5e-15  Score=122.75  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             CcceeEEecccceecCCCCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      +.+..+.+++.....+|.++.++....++...+   .++.+|||++||||.+++.++..|+ +|++||.|+.+++.|++|
T Consensus        95 e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N  173 (309)
T d2igta1          95 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKEN  173 (309)
T ss_dssp             ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             EeEEEEEEeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHh
Confidence            456777788887789999999999988877653   3578999999999999999998877 799999999999999999


Q ss_pred             HHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccch-------------hHHHHHHH
Q 041459          101 AALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL-------------NPLLQLAD  167 (225)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~-------------~~~~~~l~  167 (225)
                      +..|++....+++...|...       .+...           .+...+||+|+++||.             .++..++.
T Consensus       174 ~~ln~~~~~~~~~i~~D~~~-------~l~~~-----------~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~  235 (309)
T d2igta1         174 QVLAGLEQAPIRWICEDAMK-------FIQRE-----------ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  235 (309)
T ss_dssp             HHHHTCTTSCEEEECSCHHH-------HHHHH-----------HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             hhhhcccCCcEEEEeCCHHH-------hHHHH-----------hhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHH
Confidence            99999886556665543311       11111           0135789999999983             23455677


Q ss_pred             HHHHhccCCeEEEE-ecc-CCCcHHHHHHHHHhh
Q 041459          168 HIVSYAKPGAVVGI-SGI-LSEQLPHIINRYSEF  199 (225)
Q Consensus       168 ~~~~~LkpgG~l~~-~~~-~~~~~~~~~~~~~~~  199 (225)
                      .+..+|+|||.+++ ++. ..-....+.+.+++.
T Consensus       236 ~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~  269 (309)
T d2igta1         236 ICREILSPKALGLVLTAYSIRASFYSMHELMRET  269 (309)
T ss_dssp             HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            88899999986444 332 233444555555543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.59  E-value=2.5e-15  Score=123.12  Aligned_cols=120  Identities=23%  Similarity=0.200  Sum_probs=94.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++|+...+.. .++.+...+....            
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~-~nv~~~~~Di~~~------------  149 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADF------------  149 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTC------------
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC-CceEEEEeeeecc------------
Confidence            678999999999999999998874  5678999999999999999999876543 4566666554332            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LE  201 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~  201 (225)
                                 .++..||.|+++.+-.  ..+++++.+.|||||++++.....++.....+.+++. |.
T Consensus       150 -----------~~~~~fD~V~ld~p~p--~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~  205 (250)
T d1yb2a1         150 -----------ISDQMYDAVIADIPDP--WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH  205 (250)
T ss_dssp             -----------CCSCCEEEEEECCSCG--GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred             -----------cccceeeeeeecCCch--HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence                       1567899999986644  3668899999999999998766666667777776654 53

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=9.8e-15  Score=121.77  Aligned_cols=104  Identities=15%  Similarity=0.104  Sum_probs=85.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +++|.+|||+|||.|.+++.+++....+|+|+.+|+..++.|++++...++. +++.+...+...               
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~-~~v~~~~~d~~~---------------  123 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGWEQ---------------  123 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCGGG---------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh-hhhHHHHhhhhc---------------
Confidence            6689999999999999999977653368999999999999999998888776 466666654432               


Q ss_pred             cccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEeccC
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                .+++||.|++-.++++     +..+++.+.++|||||.+++..+.
T Consensus       124 ----------~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         124 ----------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             ----------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ----------ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence                      2568999999877765     467899999999999999987664

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=3.3e-14  Score=117.56  Aligned_cols=164  Identities=17%  Similarity=0.253  Sum_probs=111.2

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+..+.++++.-.   ++|.+..+.+.+...  ..+..+++|+|||+|.+++.+++.+..+++++|+|+.+++.|++|+.
T Consensus        78 ~~~~f~v~~~vlI---PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~  154 (271)
T d1nv8a_          78 MGLSFLVEEGVFV---PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE  154 (271)
T ss_dssp             TTEEEECCTTSCC---CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH
T ss_pred             eeeEEEEecCccC---chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHH
Confidence            3466777777432   566666665554333  22456899999999999999888888899999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH---------------------
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---------------------  161 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------  161 (225)
                      .+++.+ .+.+...+....          + .          ...++||+|++||||-+                     
T Consensus       155 ~~~~~~-~~~i~~~~~~~~----------~-~----------~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~  212 (271)
T d1nv8a_         155 RHGVSD-RFFVRKGEFLEP----------F-K----------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGE  212 (271)
T ss_dssp             HTTCTT-SEEEEESSTTGG----------G-G----------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTT
T ss_pred             HcCCCc-eeEEeecccccc----------c-c----------cccCcccEEEEcccccCcccccceeeeecccccccccc
Confidence            998863 344443322111          0 0          02468999999999511                     


Q ss_pred             -----HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhcccccCCceEEEeeeec
Q 041459          162 -----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILLSEMDDWTCVSGTKKR  220 (225)
Q Consensus       162 -----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~~  220 (225)
                           ++.+   +.++|+|||.+++ +++.++...+.+.+... |   -..-.|..+.+..+|+.
T Consensus       213 dGl~~~r~i---~~~~L~~~G~l~~-Eig~~Q~~~v~~l~~~~g~---~kDl~g~~R~~~~~k~~  270 (271)
T d1nv8a_         213 DGLDFYREF---FGRYDTSGKIVLM-EIGEDQVEELKKIVSDTVF---LKDSAGKYRFLLLNRRS  270 (271)
T ss_dssp             TSCHHHHHH---HHHCCCTTCEEEE-ECCTTCHHHHTTTSTTCEE---EECTTSSEEEEEEECCC
T ss_pred             chHHHHHHH---HHHhcCCCCEEEE-EECHHHHHHHHHHHHhCCE---EeccCCCcEEEEEEEcC
Confidence                 2333   3578999999888 46666766666555433 2   12224566788887764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.58  E-value=5.8e-15  Score=114.85  Aligned_cols=112  Identities=10%  Similarity=-0.026  Sum_probs=79.0

Q ss_pred             HHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC----------CcceEEEec
Q 041459           49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP----------KKMKLHLVP  117 (225)
Q Consensus        49 ~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~----------~~~~~~~~~  117 (225)
                      .+.+..+ +.+|.+|||+|||+|..+.++++.|. +|+|+|+|+.|++.|++++...+...          ....+...+
T Consensus        10 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          10 QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            3344443 56789999999999999999999875 59999999999999998875443211          011222222


Q ss_pred             CCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459          118 DRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ...++.                     .....||+|++...+++     ...+++.+.++|||||.+++.
T Consensus        89 ~~~l~~---------------------~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          89 FFALTA---------------------RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             CSSSTH---------------------HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cccccc---------------------ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            211100                     02357999999776654     467899999999999998774

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-14  Score=118.26  Aligned_cols=163  Identities=12%  Similarity=0.043  Sum_probs=97.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEE--E--ecCCCCCc-cccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLH--L--VPDRTFPA-SMNERVDG  131 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~--~--~~~~~~~~-~~~~~~~~  131 (225)
                      .+|.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.............  .  ..+..... ........
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            3577999999999999888777777789999999999999999987655432100000  0  00000000 00000000


Q ss_pred             cccc-----cccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC-------------
Q 041459          132 IVED-----LSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS-------------  186 (225)
Q Consensus       132 ~~~~-----~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~-------------  186 (225)
                      .+..     ............+.||+|++...+++       +..+++++.++|||||.++++++..             
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~  209 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC  209 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence            0000     00000001115678999999888765       4567899999999999999875532             


Q ss_pred             --CcHHHHHHHHHhh-hhhhccc-----------ccCCceEEEeeee
Q 041459          187 --EQLPHIINRYSEF-LEDILLS-----------EMDDWTCVSGTKK  219 (225)
Q Consensus       187 --~~~~~~~~~~~~~-~~~~~~~-----------~~~~w~~~~~~k~  219 (225)
                        -...++.+.+.+. |..++..           ....+..++++||
T Consensus       210 ~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk  256 (257)
T d2a14a1         210 VALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK  256 (257)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred             cCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence              2467777777765 6533331           1123456667766

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.55  E-value=9.1e-15  Score=119.98  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             HHHHhhc-cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccc
Q 041459           50 LLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNER  128 (225)
Q Consensus        50 ~~L~~~~-~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (225)
                      .+|..+. .++.+|||+|||+|.++..++..+..+|+++|+++.+++.|+++.....    .+.+...+...++.     
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~d~~~~~~-----  154 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP----VGKFILASMETATL-----  154 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS----EEEEEESCGGGCCC-----
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc----cceeEEcccccccc-----
Confidence            3444432 3567999999999999998776556689999999999999998764322    24555555444321     


Q ss_pred             ccccccccccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEecc
Q 041459          129 VDGIVEDLSSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                       +.++||+|++..+++++     ..+++++.+.|||||.+++.+.
T Consensus       155 -----------------~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         155 -----------------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             -----------------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------------CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence                             46789999999888663     4679999999999999998654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=3.3e-14  Score=117.16  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=92.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCcceEEEecCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNN-IGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      +++|++|||+|||+|.++..+++.  +..+++++|+++++++.|++|+.... ...+++.+...+....+.         
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~---------  164 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL---------  164 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC---------
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc---------
Confidence            678999999999999999999874  56789999999999999999987542 112345555544322211         


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                                   +++.||.|+++.|-.  ...+.++.+.|||||.+++.+...++...+.+.++.
T Consensus       165 -------------~~~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~  215 (264)
T d1i9ga_         165 -------------PDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA  215 (264)
T ss_dssp             -------------CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             -------------cCCCcceEEEecCCH--HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHH
Confidence                         578899999976544  467889999999999999987777777777777753

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.54  E-value=1.9e-14  Score=109.21  Aligned_cols=104  Identities=18%  Similarity=0.237  Sum_probs=80.7

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +|.+|||+|||||.+++.++..|+.+++++|.++.+++.+++|+..+++. +++.+...+...           ++..  
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~-~~~~ii~~D~~~-----------~l~~--   79 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAER-----------AIDC--   79 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHH-----------HHHH--
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc-cchhhhcccccc-----------cccc--
Confidence            58999999999999999998889999999999999999999999988876 345554433211           1110  


Q ss_pred             cccccCCCCCCceeEEEeccchhH--HHHHHHHHH--HhccCCeEEEEec
Q 041459          138 SHEIRGISETEKYDVVIANILLNP--LLQLADHIV--SYAKPGAVVGISG  183 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~--~~LkpgG~l~~~~  183 (225)
                              ..++||+|+++||+..  ....++.+.  ++|+|+|.+++.+
T Consensus        80 --------~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          80 --------LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             --------BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             --------cccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence                    4678999999999753  345555554  5699999999853

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=1.3e-14  Score=112.34  Aligned_cols=122  Identities=20%  Similarity=0.238  Sum_probs=85.9

Q ss_pred             CCCchHHHHHHHH----HhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEE
Q 041459           40 GEHATTKLCLLLL----QSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHL  115 (225)
Q Consensus        40 ~~~~~~~~~~~~L----~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~  115 (225)
                      +.+|++..+.+.|    .....+|.+|||+|||+|.+++.++..|+ +++++|+++.+++.+++|+..+++..   .+..
T Consensus        19 ~~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~---~v~~   94 (171)
T d1ws6a1          19 SARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGA---RVVA   94 (171)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCC---EEEC
T ss_pred             CCCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcccc---ceee
Confidence            3577777776654    33345788999999999999999888876 68899999999999999999988763   2333


Q ss_pred             ecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH-HHHHHHHH--HHhccCCeEEEEec
Q 041459          116 VPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP-LLQLADHI--VSYAKPGAVVGISG  183 (225)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~-~~~~l~~~--~~~LkpgG~l~~~~  183 (225)
                      .+++.+     ......             ...+||+|+++||+.. ....+..+  ..+|+|||++++..
T Consensus        95 ~~~d~~-----~~~~~~-------------~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1          95 LPVEVF-----LPEAKA-------------QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             SCHHHH-----HHHHHH-------------TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             eehhcc-----cccccc-------------cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence            322111     000000             4568999999999742 22233333  35799999998853

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=2.4e-14  Score=118.25  Aligned_cols=123  Identities=15%  Similarity=0.194  Sum_probs=95.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++|||+|||+|.++..+++.  +..+++++|+++.+++.|++++...++. +.+.+...+...          .+ 
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-~~v~~~~~d~~~----------~~-  168 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISE----------GF-  168 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGG----------CC-
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-cCcEEEeccccc----------cc-
Confidence            678999999999999999999874  4578999999999999999999988865 345554433211          01 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh-hhhhc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  204 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~  204 (225)
                                  ....+|.|+.+.+-  +..+++++.+.|||||.+++.+...++...+.+.+++. |..++
T Consensus       169 ------------~~~~~D~V~~d~p~--p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         169 ------------DEKDVDALFLDVPD--PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE  226 (266)
T ss_dssp             ------------SCCSEEEEEECCSC--GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             ------------cccceeeeEecCCC--HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEE
Confidence                        46679999987653  35678999999999999998877777777777777764 54333

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.53  E-value=3.3e-14  Score=118.15  Aligned_cols=102  Identities=19%  Similarity=0.253  Sum_probs=81.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++....+.+   +.+...+...++           
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~---~~f~~~d~~~~~-----------   90 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD---SEFLEGDATEIE-----------   90 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSE---EEEEESCTTTCC-----------
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccc---cccccccccccc-----------
Confidence            346789999999999999998874 3 367999999999999999998776642   555555554432           


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                  ..++||+|+++..+++   +..+++++.+.|||||.+++.+
T Consensus        91 ------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          91 ------------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             ------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ------------ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence                        2457999999988765   5678999999999999998754

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.6e-14  Score=113.01  Aligned_cols=121  Identities=17%  Similarity=0.170  Sum_probs=87.3

Q ss_pred             CCCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459           40 GEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV  116 (225)
Q Consensus        40 ~~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~  116 (225)
                      +.+|++..+.+.+-..+   -.+.+|||++||||.+++.++..|+.++++||.++.+++.+++|+...+..+  ..+...
T Consensus        22 ~~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~--~~ii~~   99 (183)
T d2fpoa1          22 GLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN--ARVVNS   99 (183)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS--EEEECS
T ss_pred             CcCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc--eeeeee
Confidence            36888888777764432   2688999999999999999999999999999999999999999998776543  444332


Q ss_pred             cCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHHH--hccCCeEEEEec
Q 041459          117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIVS--YAKPGAVVGISG  183 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~~--~LkpgG~l~~~~  183 (225)
                      +.  +         .++..          ...+||+|+++||+..  ....+..+.+  +|+++|.+++..
T Consensus       100 d~--~---------~~l~~----------~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         100 NA--M---------SFLAQ----------KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             CH--H---------HHHSS----------CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cc--c---------ccccc----------cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            21  1         11110          3568999999999753  4556666554  699999999853

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.51  E-value=9.8e-14  Score=111.34  Aligned_cols=97  Identities=13%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++..      +.+.+...+.+..+               
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~------~~~~~~~~~~~~~~---------------   77 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK------DGITYIHSRFEDAQ---------------   77 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGCC---------------
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc------cccccccccccccc---------------
Confidence            577999999999999999988764 59999999999999987643      22445544433221               


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHH-HhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIV-SYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~-~~LkpgG~l~~~~~  184 (225)
                              .+++||+|++...+++   ....+.++. ++|||||.++++..
T Consensus        78 --------~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          78 --------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             --------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             --------cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeC
Confidence                    4678999999888876   566788887 78999999998643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.51  E-value=3.2e-14  Score=111.14  Aligned_cols=125  Identities=19%  Similarity=0.261  Sum_probs=94.7

Q ss_pred             CCCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe
Q 041459           40 GEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV  116 (225)
Q Consensus        40 ~~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~  116 (225)
                      +.+|++..+.+.+-+.+   ..|.+|||++||||.+++.++..|+.+++++|.++.+++.+++|+...+.. +++.+...
T Consensus        20 ~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~-~~~~i~~~   98 (182)
T d2fhpa1          20 NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKM   98 (182)
T ss_dssp             SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEES
T ss_pred             CcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc-cccccccc
Confidence            46888888887775443   268999999999999999999999999999999999999999999887765 35556554


Q ss_pred             cCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHH--HhccCCeEEEEec
Q 041459          117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIV--SYAKPGAVVGISG  183 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~--~~LkpgG~l~~~~  183 (225)
                      +...       .+..+.           ....+||+|+++|||..  +...++.+.  .+|+++|++++..
T Consensus        99 D~~~-------~l~~~~-----------~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1          99 DANR-------ALEQFY-----------EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             CHHH-------HHHHHH-----------HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cchh-------hhhhhc-----------ccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            4321       111110           03568999999999853  566677665  4699999998853

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1e-13  Score=114.38  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=84.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++..       .+.+...+...++.           
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~-------~~~~~~~d~~~l~~-----------  143 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-------QVTFCVASSHRLPF-----------  143 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTSCSB-----------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc-------cccceeeehhhccC-----------
Confidence            446789999999999999998875 45689999999999999987532       25566667666543           


Q ss_pred             ccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHH
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  195 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  195 (225)
                                 +++.||+|++....+++    +++.++|||||.++++....+...++.+.
T Consensus       144 -----------~~~sfD~v~~~~~~~~~----~e~~rvLkpgG~l~~~~p~~~~l~el~~~  189 (268)
T d1p91a_         144 -----------SDTSMDAIIRIYAPCKA----EELARVVKPGGWVITATPGPRHLMELKGL  189 (268)
T ss_dssp             -----------CTTCEEEEEEESCCCCH----HHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred             -----------CCCCEEEEeecCCHHHH----HHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence                       57889999998766654    56889999999999987776666665543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.4e-14  Score=113.40  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             HHHHHHh-hccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccc
Q 041459           48 CLLLLQS-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMN  126 (225)
Q Consensus        48 ~~~~L~~-~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (225)
                      +++.+.. ...+|++|||||||+|..+..+++.+..+++++|+|+.+++.|+++....+.   .+.....+...      
T Consensus        42 ~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~------  112 (229)
T d1zx0a1          42 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH---KVIPLKGLWED------  112 (229)
T ss_dssp             HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS---EEEEEESCHHH------
T ss_pred             HHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc---ccccccccccc------
Confidence            3344433 3457889999999999999999987667899999999999999998775542   23333332211      


Q ss_pred             ccccccccccccccccCCCCCCceeEEEeccch--------hHHHHHHHHHHHhccCCeEEEEe
Q 041459          127 ERVDGIVEDLSSHEIRGISETEKYDVVIANILL--------NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                       ....+             +.++||.|+.+...        .....+++.+.++|||||++++.
T Consensus       113 -~~~~~-------------~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         113 -VAPTL-------------PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             -HGGGS-------------CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             -ccccc-------------ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence             11111             56789999865431        22456889999999999999874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.6e-14  Score=115.22  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CcceEEEecCC
Q 041459           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGP---KKMKLHLVPDR  119 (225)
Q Consensus        45 ~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~  119 (225)
                      ...+++.|...+++|++|||+|||+|+.+..+++.  +..+|+++|+++++++.|++++...++.+   ..+.+...++.
T Consensus        63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            34555566555678999999999999999988874  46789999999999999999998765432   34555555543


Q ss_pred             CCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          120 TFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ...                      .+...||+|+++...+..   .+.+.+.|||||++++.
T Consensus       143 ~~~----------------------~~~~~fD~I~~~~~~~~i---p~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         143 MGY----------------------AEEAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILP  180 (224)
T ss_dssp             GCC----------------------GGGCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             ccc----------------------chhhhhhhhhhhcchhhc---CHHHHhhcCCCcEEEEE
Confidence            221                      145689999998766543   23567899999999884

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=2e-13  Score=115.73  Aligned_cols=100  Identities=25%  Similarity=0.301  Sum_probs=81.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .+|++|||+|||+|.+++.+++.|+.+|+|+|.++ ++..|+++...++.. .++.+...+...++.             
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~-~~i~~i~~~~~~l~~-------------  101 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS-DKITLLRGKLEDVHL-------------  101 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCC-------------
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcc-ccceEEEeehhhccC-------------
Confidence            37999999999999999999999999999999997 778899888888876 456666666554421             


Q ss_pred             ccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~  180 (225)
                               +..+||+|++.+..+      ....++....++|||||.++
T Consensus       102 ---------~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         102 ---------PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ---------SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence                     567899999976643      25567888889999999987

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=8.6e-14  Score=111.26  Aligned_cols=100  Identities=17%  Similarity=0.214  Sum_probs=77.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++|||+|||+|.++..+++.  ...+++++|+++.+++.|++++...++.+  +.+...+....            
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n--~~~~~~d~~~~------------  138 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN--VIFVCGDGYYG------------  138 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGC------------
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc--cccccCchHHc------------
Confidence            678999999999999999998874  35689999999999999999999888764  44444443221            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                ....+.||+|+++...++..   +.+.+.|||||++++.
T Consensus       139 ----------~~~~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         139 ----------VPEFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             ----------CGGGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             ----------cccccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence                      11456799999987765532   3566789999999873

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.7e-13  Score=115.61  Aligned_cols=102  Identities=20%  Similarity=0.236  Sum_probs=81.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..+|++|||+|||+|.+++.+++.|+.+|+|+|.++. ...+++++..+++. +++.+...+...++.            
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~-~~v~~~~~~~~~~~~------------   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLD-HVVTIIKGKVEEVEL------------   96 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCT-TTEEEEESCTTTCCC------------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCc-cccceEeccHHHccc------------
Confidence            3478999999999999999999999999999999985 56777788888876 467777666655421            


Q ss_pred             cccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~  181 (225)
                                +.+++|+|++....+      .+..++..+.++|||||.++.
T Consensus        97 ----------~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          97 ----------PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             ----------SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ----------ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence                      467899999976543      257788899999999999874

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.3e-13  Score=114.81  Aligned_cols=107  Identities=20%  Similarity=0.208  Sum_probs=76.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.||+.|+++....+...........+.+...     ...       
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------  122 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-----LDK-------  122 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-----HHH-------
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc-----ccc-------
Confidence            567999999999999999999874 6999999999999999988766644222222222222110     000       


Q ss_pred             cccccCCCCCCceeEEEecc-chh----------HHHHHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANI-LLN----------PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~-~~~----------~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                           .......||.|+|.. .+.          ....+++++.++|||||++++.
T Consensus       123 -----~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         123 -----DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             -----HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -----ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence                 011356899998742 222          3567899999999999999985

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.2e-13  Score=112.75  Aligned_cols=101  Identities=27%  Similarity=0.250  Sum_probs=79.0

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      .++++|||+|||+|.+++.+++.|+.+|+|+|.++.+.. |+++...++.. +++.+...+...+..             
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~-~~i~~~~~~~~~l~~-------------   98 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLE-DTITLIKGKIEEVHL-------------   98 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCT-TTEEEEESCTTTSCC-------------
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCC-ccceEEEeeHHHhcC-------------
Confidence            468999999999999999999999999999999998764 55566666665 466776666554421             


Q ss_pred             ccccccCCCCCCceeEEEeccchh------HHHHHHHHHHHhccCCeEEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~------~~~~~l~~~~~~LkpgG~l~~  181 (225)
                               +..+||+|++.++.+      .+..++....++|||||.++.
T Consensus        99 ---------~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          99 ---------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ---------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ---------ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence                     467899999976643      245667777889999999874

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.3e-13  Score=108.25  Aligned_cols=124  Identities=15%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ..++||+|||+|.+++.+++ .+..+++|+|+++.+++.|++|+..+++. +++.+...+....       +...+..  
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~-~~~~~~~~~~~~~-------~~~~~~~--  131 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTL-------LMDALKE--  131 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCS-------STTTSTT--
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC-cceeeeeeccHHh-------hhhhhhh--
Confidence            45899999999999998765 56788999999999999999999999987 4555554432211       0000000  


Q ss_pred             cccccCCCCCCceeEEEeccchhH--------------------------------------HHHHHHHHHHhccCCeEE
Q 041459          138 SHEIRGISETEKYDVVIANILLNP--------------------------------------LLQLADHIVSYAKPGAVV  179 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l  179 (225)
                             ...++||+|+|||||..                                      +..++++...+++..|.+
T Consensus       132 -------~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~  204 (250)
T d2h00a1         132 -------ESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY  204 (250)
T ss_dssp             -------CCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCE
T ss_pred             -------cccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEE
Confidence                   03567999999999742                                      233466667778888877


Q ss_pred             EEeccCCCcHHHHHHHHHhh
Q 041459          180 GISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~  199 (225)
                      .+..-..+....+...+++.
T Consensus       205 t~~ig~~~~l~~i~~~L~~~  224 (250)
T d2h00a1         205 SCMLGKKCSLAPLKEELRIQ  224 (250)
T ss_dssp             EEEESSTTSHHHHHHHHHHT
T ss_pred             EEEecchhhHHHHHHHHHHc
Confidence            54322345667777776654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=1.3e-13  Score=109.26  Aligned_cols=75  Identities=24%  Similarity=0.359  Sum_probs=61.6

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .|++|||+|||+|.+++.++..|+.+++|+|+++.+++.|++|+..++..   ..+...+...                 
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~---~~~~~~d~~~-----------------  105 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK---FKVFIGDVSE-----------------  105 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS---EEEEESCGGG-----------------
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC---ceEEECchhh-----------------
Confidence            58899999999999999988888889999999999999999998877754   3344333221                 


Q ss_pred             cccccCCCCCCceeEEEeccchh
Q 041459          138 SHEIRGISETEKYDVVIANILLN  160 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~  160 (225)
                              ...+||+|++|||+.
T Consensus       106 --------~~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         106 --------FNSRVDIVIMNPPFG  120 (201)
T ss_dssp             --------CCCCCSEEEECCCCS
T ss_pred             --------hCCcCcEEEEcCccc
Confidence                    356799999999984

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=1.8e-13  Score=107.97  Aligned_cols=91  Identities=12%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++.+|||+|||+|.++..++     +++|+|+|+.+++.|+++    +     +.+...+...++.              
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~----~-----~~~~~~d~~~l~~--------------   87 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR----G-----VFVLKGTAENLPL--------------   87 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT----T-----CEEEECBTTBCCS--------------
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc----c-----ccccccccccccc--------------
Confidence            56689999999999887763     368999999999999863    2     4456666554432              


Q ss_pred             cccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              ++++||+|+++..+++   +..++.++.+.|+|||.+++...
T Consensus        88 --------~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          88 --------KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             --------CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------ccccccccccccccccccccccchhhhhhcCCCCceEEEEec
Confidence                    5678999999988876   56789999999999999998654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=2.3e-13  Score=106.21  Aligned_cols=134  Identities=15%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             ceeEEecccceecCCCCchHHHHHHHHHhhc---cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        26 ~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~---~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      +..+..+.+..    .+|++..+.+.+-+.+   -.+.+|||++||||.+++.+++.|+.+++.||.+..+++..++|+.
T Consensus        12 g~~l~~~~~~~----~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~   87 (183)
T d2ifta1          12 GRKLPVLNSEG----LRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQ   87 (183)
T ss_dssp             TCEEECC-------------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCEecCCCCCC----cCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHh
Confidence            34454444433    5788877777664443   2688999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--HHHHHHHHH--HhccCCeE
Q 041459          103 LNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--LLQLADHIV--SYAKPGAV  178 (225)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--~~~~l~~~~--~~LkpgG~  178 (225)
                      ..+...........+...           ++        .......+||+|+++|||..  ....++.+.  .+|+++|+
T Consensus        88 ~l~~~~~~~~~~~~d~~~-----------~l--------~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~l  148 (183)
T d2ifta1          88 TLKCSSEQAEVINQSSLD-----------FL--------KQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNAL  148 (183)
T ss_dssp             HTTCCTTTEEEECSCHHH-----------HT--------TSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             hhcccccccccccccccc-----------cc--------cccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcE
Confidence            887664334433322100           00        01113457999999999853  556666665  47999999


Q ss_pred             EEEe
Q 041459          179 VGIS  182 (225)
Q Consensus       179 l~~~  182 (225)
                      +++.
T Consensus       149 iiiE  152 (183)
T d2ifta1         149 IYVE  152 (183)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=3.1e-13  Score=107.30  Aligned_cols=118  Identities=15%  Similarity=0.113  Sum_probs=86.3

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++-.|||+|||+|..+..+|+ .+...++|+|+++.++..|.+++...++.|  +.+...++..+       ...+    
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N--v~~~~~Da~~l-------~~~~----   95 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN--VKLLNIDADTL-------TDVF----   95 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS--EEEECCCGGGH-------HHHC----
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC--chhcccchhhh-------hccc----
Confidence            345799999999999998776 578899999999999999999999888865  56655544221       1111    


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH-----------HHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                               +++.+|.|+++.|..++           ..+++.+.+.|||||.+++.+..........+.+.
T Consensus        96 ---------~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~  158 (204)
T d2fcaa1          96 ---------EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFS  158 (204)
T ss_dssp             ---------CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred             ---------CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHH
Confidence                     67789999887665321           36899999999999999886433333333334433

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-13  Score=108.76  Aligned_cols=122  Identities=15%  Similarity=0.031  Sum_probs=83.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC---------------CCcceEEEecCCC
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIG---------------PKKMKLHLVPDRT  120 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~---------------~~~~~~~~~~~~~  120 (225)
                      ..++.+|||+|||+|..+.++++.|. +|+|+|+|+.+++.|+++....+..               ...+.+...+...
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            34678999999999999999999986 5999999999999998876532210               0112222221111


Q ss_pred             CCccccccccccccccccccccCCCCCCceeEEEeccchh-----HHHHHHHHHHHhccCCeEEEEeccCC---------
Q 041459          121 FPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILS---------  186 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~---------  186 (225)
                      +                     .......||+|+....++     ....+++.+.++|||||.+++.++..         
T Consensus       122 l---------------------~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp  180 (229)
T d2bzga1         122 L---------------------PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPP  180 (229)
T ss_dssp             G---------------------GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSS
T ss_pred             c---------------------cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCC
Confidence            1                     011467899999866554     35678999999999999987754432         


Q ss_pred             --CcHHHHHHHHHhh
Q 041459          187 --EQLPHIINRYSEF  199 (225)
Q Consensus       187 --~~~~~~~~~~~~~  199 (225)
                        -...++.+.+.+.
T Consensus       181 ~~~~~~el~~lf~~~  195 (229)
T d2bzga1         181 FYVPHAEIERLFGKI  195 (229)
T ss_dssp             CCCCHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHhcCC
Confidence              1344566666654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.3e-13  Score=114.17  Aligned_cols=121  Identities=16%  Similarity=0.159  Sum_probs=88.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCC---------CCCcceEEEecCCCCCcc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNI---------GPKKMKLHLVPDRTFPAS  124 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  124 (225)
                      +++|.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++|+...+.         ..+.+.+...+...... 
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~-  174 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-  174 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc-
Confidence            678999999999999999999874  567899999999999999999875421         11345555555433211 


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHh
Q 041459          125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  198 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  198 (225)
                            .+             ....||.|+.+.|-.  ..++.++.++|||||.+++.....++...+.+.++.
T Consensus       175 ------~~-------------~~~~fD~V~LD~p~P--~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~  227 (324)
T d2b25a1         175 ------DI-------------KSLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT  227 (324)
T ss_dssp             -------------------------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             ------cc-------------CCCCcceEeecCcCH--HHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHH
Confidence                  11             456799999876543  357889999999999999876666777777777763

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.42  E-value=8e-13  Score=105.25  Aligned_cols=104  Identities=17%  Similarity=0.126  Sum_probs=78.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +++|.+|||+|||+|..+.++++. +..+|+|+|+++.+++.|++++...+    .+.....+......           
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~-----------  118 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDASKPWK-----------  118 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCTTCGGG-----------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeeccCccc-----------
Confidence            678999999999999999998874 66789999999999999999877543    24455555433210           


Q ss_pred             ccccccccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEe
Q 041459          135 DLSSHEIRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              .......+|+++.+.+. .....++.++.+.|||||.+++.
T Consensus       119 --------~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         119 --------YSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             --------TTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------cccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence                    00023468888776543 44567899999999999999885

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=4.5e-13  Score=107.99  Aligned_cols=104  Identities=18%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||+|||+|+.+.++++.  +..+|+|+|+++.+++.+++++...+.    +.....+.....        .+ 
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~----~~~i~~d~~~~~--------~~-  137 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN----IVPILGDATKPE--------EY-  137 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTT----EEEEECCTTCGG--------GG-
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCC----ceEEEEECCCcc--------cc-
Confidence            668999999999999999999985  567899999999999999988754431    233333332210        00 


Q ss_pred             cccccccccCCCCCCceeEEEeccchh-HHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~-~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                                -.....+|+|+++.+.. ....++.++.+.|||||.++++
T Consensus       138 ----------~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         138 ----------RALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ----------TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----------cccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence                      00346799999987654 4566899999999999999885

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1e-12  Score=112.29  Aligned_cols=158  Identities=16%  Similarity=0.097  Sum_probs=112.1

Q ss_pred             cceeEEecccceecCCCCchHHHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHh
Q 041459           25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      .+..+.++|+..|+........+...+++.. ..++.+|||+.||+|.+++.+++. ..+|+|+|+++.+++.|++|+..
T Consensus       178 ~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~  256 (358)
T d1uwva2         178 NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARL  256 (358)
T ss_dssp             TTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHh
Confidence            4567888888776654443333333333322 346789999999999999999876 46799999999999999999999


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      |++.+  +.+...+....-.       .           .......+|+|+.+||.....+.+..+.+. +|.-++|+||
T Consensus       257 n~i~n--~~~~~~~~~~~~~-------~-----------~~~~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYVSC  315 (358)
T d1uwva2         257 NGLQN--VTFYHENLEEDVT-------K-----------QPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSC  315 (358)
T ss_dssp             TTCCS--EEEEECCTTSCCS-------S-----------SGGGTTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEEES
T ss_pred             ccccc--ceeeecchhhhhh-------h-----------hhhhhccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEEeC
Confidence            99875  4555544332200       0           001346799999999987666677777654 7888999999


Q ss_pred             cCCCcHHHHHHHHHhhhhhhc
Q 041459          184 ILSEQLPHIINRYSEFLEDIL  204 (225)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~  204 (225)
                      .......++....+..|....
T Consensus       316 np~TlaRDl~~l~~~gy~l~~  336 (358)
T d1uwva2         316 NPATLARDSEALLKAGYTIAR  336 (358)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHCCCeEeE
Confidence            988777777766665554333

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.41  E-value=1.2e-12  Score=106.86  Aligned_cols=101  Identities=14%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++++...++. +++.+...+....               
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~rv~~~~~D~~~~---------------  142 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFEP---------------  142 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTSC---------------
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc-cchhhccccchhh---------------
Confidence            457999999999999998876 56778999998 67999999999888876 4555555443211               


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               ....||+|+++..++++     ..+++++++.|||||.+++.+.
T Consensus       143 ---------~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         143 ---------LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             ---------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ---------cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence                     34579999998877653     4679999999999999998654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.41  E-value=1.4e-12  Score=105.33  Aligned_cols=104  Identities=16%  Similarity=0.162  Sum_probs=72.9

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +++|.+|||+|||+|+.+.+++.. +..+|+|+|+|+.|++.++.++...+    .+.....+.....        .+  
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~----ni~~i~~d~~~~~--------~~--  137 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE----NIIPILGDANKPQ--------EY--  137 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT----TEEEEECCTTCGG--------GG--
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc----ccceEEEeeccCc--------cc--
Confidence            568999999999999999999875 56789999999999999988765433    2333343333221        01  


Q ss_pred             ccccccccCCCCCCceeEEEeccch-hHHHHHHHHHHHhccCCeEEEEe
Q 041459          135 DLSSHEIRGISETEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~-~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ......+|++++.... .....++.++.+.|||||.++++
T Consensus       138 ---------~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         138 ---------ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             ---------TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------ccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEE
Confidence                     0012234555554332 34566799999999999998885

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.40  E-value=1.6e-12  Score=103.08  Aligned_cols=104  Identities=14%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .-.|||||||+|.++..+|+ .+...++|+|+++.++..|.+++...++.|  +.+...++..+.               
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N--i~~~~~da~~l~---------------   94 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN--IKLLWVDGSDLT---------------   94 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS--EEEEECCSSCGG---------------
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc--ceeeecCHHHHh---------------
Confidence            45799999999999999876 578889999999999999999999888865  667766654431               


Q ss_pred             cccccCCCCCCceeEEEeccchhH-----------HHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                           ...+..++|.|+++.|..+           ...+++.+.+.|||||.+++.+.
T Consensus        95 -----~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1          95 -----DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             -----GTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             -----hhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence                 1115778999999877532           24789999999999999988543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.37  E-value=1.4e-12  Score=102.73  Aligned_cols=72  Identities=33%  Similarity=0.504  Sum_probs=57.8

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .|++|||+|||||.+++.++..|..+|+|+|+++.+++.|++|...       +.+...+...                 
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~-------~~~~~~D~~~-----------------  103 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG-------VNFMVADVSE-----------------  103 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT-------SEEEECCGGG-----------------
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc-------ccEEEEehhh-----------------
Confidence            5899999999999999999999988999999999999999988642       3344443322                 


Q ss_pred             cccccCCCCCCceeEEEeccchhH
Q 041459          138 SHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                              ..++||+|++|||+..
T Consensus       104 --------l~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_         104 --------ISGKYDTWIMNPPFGS  119 (197)
T ss_dssp             --------CCCCEEEEEECCCC--
T ss_pred             --------cCCcceEEEeCcccch
Confidence                    2568999999999854

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.6e-12  Score=104.60  Aligned_cols=132  Identities=11%  Similarity=0.089  Sum_probs=84.4

Q ss_pred             cCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcce------------------------
Q 041459           57 KGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMK------------------------  112 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~------------------------  112 (225)
                      .+|.++||+|||+|.+++..+.....+|+|+|+|+.|++.+++.+.......+...                        
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            35789999999999888765555567899999999999999987754332111000                        


Q ss_pred             --EEEecCCCCCccccccccccccccccccccC-CCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEe
Q 041459          113 --LHLVPDRTFPASMNERVDGIVEDLSSHEIRG-ISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       113 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~  182 (225)
                        ......+...               .+.+.. -...+.||+|++...+++       +...+++++++|||||.+++.
T Consensus       133 ~~~~~~~~Dv~~---------------~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~  197 (263)
T d2g72a1         133 RVKRVLPIDVHQ---------------PQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  197 (263)
T ss_dssp             HEEEEECCCTTS---------------SSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhccccccccC---------------CCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence              0000000000               000000 013457999999887754       467899999999999999885


Q ss_pred             ccC---------------CCcHHHHHHHHHhh-hhhh
Q 041459          183 GIL---------------SEQLPHIINRYSEF-LEDI  203 (225)
Q Consensus       183 ~~~---------------~~~~~~~~~~~~~~-~~~~  203 (225)
                      +..               .-..+++.+.+.+. |+.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~  234 (263)
T d2g72a1         198 GALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVR  234 (263)
T ss_dssp             EEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             cccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEE
Confidence            432               12456677777665 6543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.33  E-value=1.1e-11  Score=101.36  Aligned_cols=102  Identities=18%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +..+|||+|||+|.++..+++ ++..+++++|+ |.+++.|++++...++. +++.+...+  .+..             
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-~ri~~~~~d--~~~~-------------  143 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGD--FFKP-------------  143 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECC--TTSC-------------
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc-ceeeeeeee--cccc-------------
Confidence            457899999999999999876 56778999997 78999999999888876 345554433  2210             


Q ss_pred             ccccccCCCCCCceeEEEeccchhHH-----HHHHHHHHHhccCCeEEEEeccC
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               .+..+|+|++...++++     ..+++++++.|||||.+++.+..
T Consensus       144 ---------~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         144 ---------LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             ---------CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ---------ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence                     34569999998887653     46799999999999999987653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.3e-12  Score=103.16  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=75.0

Q ss_pred             CcEEEEcccccHHHHHHHhc-----C--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKF-----G--AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~-----~--~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+|||+|||+|.++..+++.     +  ...++|+|+|+.|++.|++++...... ..+.+.......-     ....  
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~--  113 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL-ENVKFAWHKETSS-----EYQS--  113 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC-TTEEEEEECSCHH-----HHHH--
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc-ccccccchhhhhh-----hhcc--
Confidence            47999999999988776532     2  235899999999999999987643321 2333333222110     0000  


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEEEeccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                             ......+.++||+|++...+++   +..++.++.++|||||.+++....
T Consensus       114 -------~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~  162 (280)
T d1jqea_         114 -------RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS  162 (280)
T ss_dssp             -------HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             -------hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence                   0001115788999999888765   567899999999999999886553

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.29  E-value=4.9e-12  Score=101.59  Aligned_cols=96  Identities=21%  Similarity=0.216  Sum_probs=73.0

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++++|||+|||+|+++..+++.. .+|+++|+++.+++.|+++....    .++.+...++...              
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g--------------  128 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLG--------------  128 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGC--------------
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc----cccccccCchhhc--------------
Confidence            6789999999999999999988874 67999999999999999886532    2355665554221              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                              .....+||+|+++......   .+.+.+.|||||++++
T Consensus       129 --------~~~~~pfD~Iiv~~a~~~i---p~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         129 --------YEEEKPYDRVVVWATAPTL---LCKPYEQLKEGGIMIL  163 (224)
T ss_dssp             --------CGGGCCEEEEEESSBBSSC---CHHHHHTEEEEEEEEE
T ss_pred             --------chhhhhHHHHHhhcchhhh---hHHHHHhcCCCCEEEE
Confidence                    1145679999997665432   2356678999999987

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.27  E-value=8.7e-12  Score=99.49  Aligned_cols=100  Identities=19%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++.+|||+|||||+.+..+++.-..+++++|+++.+.+.|++++...++.+  +.+...++...              
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~n--v~~~~gd~~~g--------------  139 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN--VHVILGDGSKG--------------  139 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGC--------------
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCce--eEEEECccccC--------------
Confidence            66899999999999999999887633569999999999999999999888764  66666654321              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              ......||.|++........   ..+.+.|||||++++-
T Consensus       140 --------~~~~~pfD~Iiv~~a~~~ip---~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         140 --------FPPKAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             --------CGGGCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             --------CcccCcceeEEeecccccCC---HHHHHhcCCCCEEEEE
Confidence                    11567899999976654422   2355689999999873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-11  Score=104.02  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             HHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHh-------cCCCCCcceEEEe
Q 041459           46 KLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAAL-------NNIGPKKMKLHLV  116 (225)
Q Consensus        46 ~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~-------~~~~~~~~~~~~~  116 (225)
                      ..+.+++... ++++++|||+|||+|.+++.+++ .+..+++|+|+++.+++.|+++...       .++...++.+..+
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            3334445443 66889999999999999998776 5777899999999999999876653       2344445667666


Q ss_pred             cCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEec
Q 041459          117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +....+..     .               .....|+|+++...  ..+...+.++.+.|||||.++...
T Consensus       218 d~~~~~~~-----~---------------~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         218 DFLSEEWR-----E---------------RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             CTTSHHHH-----H---------------HHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccc-----c---------------ccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            65433110     0               01135888886543  235677899999999999998754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=5.5e-12  Score=101.28  Aligned_cols=113  Identities=16%  Similarity=0.272  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc----C---CCeEEEEeCCHHHHHHHHHHHHhcCCC---CCcceEE
Q 041459           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF----G---AAMSVGVDIDPQAIKSAHQNAALNNIG---PKKMKLH  114 (225)
Q Consensus        45 ~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~----~---~~~v~~vDi~~~~l~~a~~~~~~~~~~---~~~~~~~  114 (225)
                      ...+++.|...++++++|||+|||||+.+..+++.    +   ..+|+++|+++.+++.|++++......   ..++.+.
T Consensus        67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            34445555444678999999999999999887764    2   357999999999999999987543221   1235565


Q ss_pred             EecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          115 LVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ..++...                      ..+...||.|+++.......   +.+.+.|||||++++-
T Consensus       147 ~~d~~~~----------------------~~~~~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         147 EGDGRKG----------------------YPPNAPYNAIHVGAAAPDTP---TELINQLASGGRLIVP  189 (223)
T ss_dssp             ESCGGGC----------------------CGGGCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             ecccccc----------------------cccccceeeEEEEeechhch---HHHHHhcCCCcEEEEE
Confidence            5554321                      11466899999977665432   3466899999999873

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=4.2e-11  Score=103.72  Aligned_cols=120  Identities=23%  Similarity=0.269  Sum_probs=80.4

Q ss_pred             HHHHHHHHhh-ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcC-------CCCCcceEEEe
Q 041459           46 KLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNN-------IGPKKMKLHLV  116 (225)
Q Consensus        46 ~~~~~~L~~~-~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~-------~~~~~~~~~~~  116 (225)
                      ..+.+++... ++++++|||+|||+|.+++.+|. .+.++++|+|+++.+++.|++++...+       .......+...
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            4455555544 67899999999999999998776 577889999999999999998876432       22122222221


Q ss_pred             cCCCCCccccccccccccccccccccCCCCCCceeEEEeccch--hHHHHHHHHHHHhccCCeEEEEec
Q 041459          117 PDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                       +.....   .....              ....+|+|+++...  ..+...+.++.+.|||||.++.+.
T Consensus       283 -~~f~~~---~~~d~--------------~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         283 -KSFVDN---NRVAE--------------LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             -SCSTTC---HHHHH--------------HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             -echhhc---ccccc--------------ccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence             111100   00000              12357888886432  346678899999999999998754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=8e-11  Score=93.73  Aligned_cols=123  Identities=12%  Similarity=0.216  Sum_probs=89.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ++++|||+|||+|..++++++.  ...+++++|+++.+++.|++++...++. +++.+..++....       +..+...
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~-~~i~l~~Gd~~e~-------l~~l~~~  127 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ-DKVTILNGASQDL-------IPQLKKK  127 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHH-------GGGHHHH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC-ccceeeecccccc-------ccchhhc
Confidence            5789999999999999998874  3578999999999999999999998887 5677776554221       1111000


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHH--HHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQ--LADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                               .....||+|+++.....+..  .+....++|||||++++-++.....++..+..+
T Consensus       128 ---------~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr  182 (214)
T d2cl5a1         128 ---------YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVR  182 (214)
T ss_dssp             ---------SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHH
T ss_pred             ---------ccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHh
Confidence                     03467999999765544333  466677899999999886665555565555444

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.7e-11  Score=93.57  Aligned_cols=123  Identities=20%  Similarity=0.257  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhhccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCC
Q 041459           45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFP  122 (225)
Q Consensus        45 ~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  122 (225)
                      ...++..|.... +.++|||+|||+|.-++++++.  ...+++++|.++...+.|++++...++. +++.+..+++..  
T Consensus        47 ~g~lL~~L~~~~-~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-~~i~~~~Gda~e--  122 (219)
T d2avda1          47 QAQLLANLARLI-QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALE--  122 (219)
T ss_dssp             HHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHH--
T ss_pred             HHHHHHHHHHcc-CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-ceEEEEEeehhh--
Confidence            344444443333 5789999999999999998874  3578999999999999999999999987 567776655321  


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          123 ASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                           .+..++..         .....||+|+.+.....+..+++.+.+.|+|||++++....
T Consensus       123 -----~l~~~~~~---------~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         123 -----TLDELLAA---------GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             -----HHHHHHHT---------TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             -----cchhhhhh---------cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence                 11111110         03568999999988888889999999999999999996553

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=3e-10  Score=88.90  Aligned_cols=122  Identities=16%  Similarity=0.236  Sum_probs=85.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ++++..++|++||+|.++..+++ .+..+++|+|.++.|++.|++++...+   .++.+........    .......  
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~----~~~~~~~--   91 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREA----DFLLKTL--   91 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGH----HHHHHHT--
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhH----HHHHHHc--
Confidence            55789999999999999998776 567889999999999999999886544   2344444322111    0111111  


Q ss_pred             ccccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHH
Q 041459          135 DLSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  197 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  197 (225)
                                 ..+++|.|+.+...            ......+..+.++|+|||.+++..+...+...+.+.++
T Consensus        92 -----------~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~  155 (192)
T d1m6ya2          92 -----------GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR  155 (192)
T ss_dssp             -----------TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             -----------CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence                       35789999887553            23457789999999999999886665544444444444

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.09  E-value=4.2e-10  Score=94.62  Aligned_cols=132  Identities=20%  Similarity=0.175  Sum_probs=88.9

Q ss_pred             CchHHHHHHHHHhh--ccCCCcEEEEcccccHHHHHHHhc------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceE
Q 041459           42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF------GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKL  113 (225)
Q Consensus        42 ~~~~~~~~~~L~~~--~~~~~~vlDiGcGtG~~~~~l~~~------~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~  113 (225)
                      ++....+..++...  .+++.+|+|.|||+|.+...+...      ...+++|+|+++.++..|+.++..++..   ...
T Consensus        99 ~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~---~~~  175 (328)
T d2f8la1          99 DSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK---MTL  175 (328)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC---CEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh---hhh
Confidence            33444444444433  335679999999999998876531      2347999999999999999998877754   233


Q ss_pred             EEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH---------------------HHHHHHHHHHh
Q 041459          114 HLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP---------------------LLQLADHIVSY  172 (225)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------~~~~l~~~~~~  172 (225)
                      ...+....                       ....+||+|++|||+..                     ...++..+.+.
T Consensus       176 ~~~d~~~~-----------------------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~  232 (328)
T d2f8la1         176 LHQDGLAN-----------------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY  232 (328)
T ss_dssp             EESCTTSC-----------------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred             hccccccc-----------------------cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh
Confidence            33322111                       14678999999999731                     22468889999


Q ss_pred             ccCCeEEEEec---c-CCCcHHHHHHHHHhh
Q 041459          173 AKPGAVVGISG---I-LSEQLPHIINRYSEF  199 (225)
Q Consensus       173 LkpgG~l~~~~---~-~~~~~~~~~~~~~~~  199 (225)
                      |+|||.+++..   + .......+++.+.+.
T Consensus       233 Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~  263 (328)
T d2f8la1         233 TKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN  263 (328)
T ss_dssp             EEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH
T ss_pred             cCCCCceEEEecCccccCchhHHHHHHHHhC
Confidence            99999876632   2 234556666666554

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=1.2e-10  Score=100.10  Aligned_cols=145  Identities=18%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             eecCceEEeeCCCCCCCCcceeEEecccceecCCCCchHHHHHHHHHhhccCCCcEEEEcccccHHHHH-HHhcCCCeEE
Q 041459            7 EVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIA-AIKFGAAMSV   85 (225)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~-l~~~~~~~v~   85 (225)
                      .=|+.++.+|..+..   .+..+.++|.|.|   .+.....+...+     ++.+|||..||||..++. +.+.+..+|+
T Consensus         5 ~EG~~~i~vp~~~~~---~~~~vFYNp~q~~---NRDlsvl~~~~~-----~~~~vLD~~sasG~rsiRya~E~~~~~V~   73 (375)
T d2dula1           5 QEGKAKILIPKAESI---YDSPVFYNPRMAL---NRDIVVVLLNIL-----NPKIVLDALSATGIRGIRFALETPAEEVW   73 (375)
T ss_dssp             EETTEEEEEC-----------CCCCCGGGHH---HHHHHHHHHHHH-----CCSEEEESSCTTSHHHHHHHHHSSCSEEE
T ss_pred             EeCcEEEEecCCCCC---CCCCcccCHHHhh---hhHHHHHHHHHh-----CCCEEEEcCCCccHHHHHHHHhCCCCEEE
Confidence            335666677765532   2234666777765   222222222222     689999999999999995 5567888999


Q ss_pred             EEeCCHHHHHHHHHHHHhcCCCCCc-------------ceEEEecCCCCCccccccccccccccccccccCCCCCCceeE
Q 041459           86 GVDIDPQAIKSAHQNAALNNIGPKK-------------MKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDV  152 (225)
Q Consensus        86 ~vDi~~~~l~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv  152 (225)
                      ++|+|+.+++.+++|+..|+..+..             +.....+.           ..++          ......||+
T Consensus        74 ~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da-----------~~~~----------~~~~~~fDv  132 (375)
T d2dula1          74 LNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA-----------NRLM----------AERHRYFHF  132 (375)
T ss_dssp             EEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH-----------HHHH----------HHSTTCEEE
T ss_pred             EecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh-----------hhhh----------HhhcCcCCc
Confidence            9999999999999999999875311             11111111           0000          003567999


Q ss_pred             EEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          153 VIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       153 Ii~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      |..+| +.....+++.+.+.++.||.+++++.
T Consensus       133 IDiDP-fGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         133 IDLDP-FGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             EEECC-SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCC-CCCcHHHHHHHHHHhccCCEEEEEec
Confidence            99986 66678899999999999999999643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.08  E-value=4.8e-10  Score=89.91  Aligned_cols=121  Identities=17%  Similarity=0.253  Sum_probs=91.1

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPAS  124 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~-~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (225)
                      .++..|.... +.++|||+|+++|.-++++++. + ..+++.+|.++...+.|++++...++. +++.+..+++..    
T Consensus        49 ~~L~~L~~~~-~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-~~i~~~~g~a~~----  122 (227)
T d1susa1          49 QFLSMLLKLI-NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALP----  122 (227)
T ss_dssp             HHHHHHHHHH-TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHH----
T ss_pred             HHHHHHHHhc-CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-cceeeeehHHHH----
Confidence            3344443332 6789999999999999998863 3 578999999999999999999999886 577777665421    


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          125 MNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                         .+..++.+.        ...++||+||.+.--..+..+++.+.++|+|||++++-..
T Consensus       123 ---~L~~l~~~~--------~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         123 ---VLDEMIKDE--------KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             ---HHHHHHHCG--------GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             ---HHHHHHhcc--------ccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccC
Confidence               122221110        0246799999988777888999999999999999998544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.04  E-value=5.9e-10  Score=91.92  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=96.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC--------CCCCcceEEEecCCCCCccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN--------IGPKKMKLHLVPDRTFPASMNE  127 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  127 (225)
                      ...+++||.+|+|.|..+..+++.+..+++++|+++.+++.|++....+.        ....++++...|+..+      
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~------  143 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF------  143 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH------
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH------
Confidence            34578999999999999998888777889999999999999997654322        1224566666554221      


Q ss_pred             cccccccccccccccCCCCCCceeEEEeccchh--H-----HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHH
Q 041459          128 RVDGIVEDLSSHEIRGISETEKYDVVIANILLN--P-----LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRY  196 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~--~-----~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~  196 (225)
                           +.           ..++||+|+++.+-.  .     -.++++.+.+.|+|||++++.+-.    ......+.+.+
T Consensus       144 -----l~-----------~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl  207 (276)
T d1mjfa_         144 -----IK-----------NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEM  207 (276)
T ss_dssp             -----HH-----------HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHH
T ss_pred             -----Hh-----------ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHH
Confidence                 11           356799999965431  1     156799999999999999884321    12334445555


Q ss_pred             Hhhhhhhccc------ccCCceEEEeeee
Q 041459          197 SEFLEDILLS------EMDDWTCVSGTKK  219 (225)
Q Consensus       197 ~~~~~~~~~~------~~~~w~~~~~~k~  219 (225)
                      ++.|..+...      ..+.|.-+.+.|+
T Consensus       208 ~~~F~~v~~y~~~vP~y~~~w~f~~as~~  236 (276)
T d1mjfa_         208 KKVFDRVYYYSFPVIGYASPWAFLVGVKG  236 (276)
T ss_dssp             HHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HhhCCeeEEEEecCcCCCCceEEEEEeCC
Confidence            5555544432      2467987777664

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=6.4e-09  Score=86.25  Aligned_cols=141  Identities=13%  Similarity=0.122  Sum_probs=97.9

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      ..++||-+|.|.|..+..+++. +..+++++|+++.+++.|++....+  .+...++.+...|+..+           +.
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~-----------l~  157 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-----------VR  157 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----------GG
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH-----------Hh
Confidence            5689999999999999988875 5678999999999999999876533  23445677777655322           21


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH--------HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED  202 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~  202 (225)
                      .          ..++||+|+++.+-..        -.++++.+.+.|+|||+++......    .....+.+.+++.|..
T Consensus       158 ~----------~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~  227 (295)
T d1inla_         158 K----------FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPI  227 (295)
T ss_dssp             G----------CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSE
T ss_pred             c----------CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcce
Confidence            1          3568999999754321        2578899999999999999853321    2234455555655644


Q ss_pred             hcc-------cccCCceEEEeeee
Q 041459          203 ILL-------SEMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~-------~~~~~w~~~~~~k~  219 (225)
                      +..       ...|.|.-..+.|+
T Consensus       228 v~~y~~~vPtyp~G~w~f~~aSk~  251 (295)
T d1inla_         228 TRVYLGFMTTYPSGMWSYTFASKG  251 (295)
T ss_dssp             EEEEEEECTTSTTSEEEEEEEESS
T ss_pred             eEEEEeeeceecCcccEEEEEeCC
Confidence            333       23588987777765

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.89  E-value=1e-08  Score=84.24  Aligned_cols=142  Identities=17%  Similarity=0.168  Sum_probs=99.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+++||-+|.|.|..+..+++. +..+++.+|+++.+++.|++....+  .++..++.+...|+..+           |
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~-----------l  142 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-----------I  142 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-----------H
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH-----------H
Confidence            45789999999999999998885 6789999999999999999887532  23334666766555322           1


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~  202 (225)
                      ..          ..++||+|+++.+-..       -.++.+.+.+.|+|||+++......    +....+.+.+++.|..
T Consensus       143 ~~----------~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~  212 (274)
T d1iy9a_         143 AK----------SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI  212 (274)
T ss_dssp             HT----------CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             hh----------cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCc
Confidence            11          3568999999754211       3578899999999999999853221    2234455556655554


Q ss_pred             hccc-------ccCCceEEEeeee
Q 041459          203 ILLS-------EMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~~-------~~~~w~~~~~~k~  219 (225)
                      +...       ..|.|.-+.+.|+
T Consensus       213 v~~y~~~vPsy~~g~w~f~~aS~~  236 (274)
T d1iy9a_         213 TKLYTANIPTYPSGLWTFTIGSKK  236 (274)
T ss_dssp             EEEEEECCTTSGGGCEEEEEEESS
T ss_pred             eEEEEEEeeecCCCceEEEEEcCC
Confidence            4332       3578987777765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=7e-09  Score=86.74  Aligned_cols=142  Identities=19%  Similarity=0.277  Sum_probs=96.3

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc---CCCCCcceEEEecCCCCCcccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN---NIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ...++||.+|.|.|..+..+++. +..+++++|+++.+++.|++.+...   .+...++++...|+..+           
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~-----------  144 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-----------  144 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-----------
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH-----------
Confidence            35689999999999999988875 5678999999999999999887532   22334667776655322           


Q ss_pred             ccccccccccCCCCCCceeEEEeccc--hh------H--HHHHHHHHHHhccCCeEEEEec--c--CCCcH-HHHHHHHH
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANIL--LN------P--LLQLADHIVSYAKPGAVVGISG--I--LSEQL-PHIINRYS  197 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~--~~------~--~~~~l~~~~~~LkpgG~l~~~~--~--~~~~~-~~~~~~~~  197 (225)
                      +.+          ...+||+|+++.+  ..      .  -.++++.+.+.|+|||++++..  .  ...+. ..+.+.++
T Consensus       145 l~~----------~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~  214 (312)
T d1uira_         145 LER----------TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR  214 (312)
T ss_dssp             HHH----------CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred             hhh----------cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHH
Confidence            111          3568999998653  11      1  2578899999999999998732  1  12222 34556666


Q ss_pred             hhhhhhcccc------cCCceEEEeeee
Q 041459          198 EFLEDILLSE------MDDWTCVSGTKK  219 (225)
Q Consensus       198 ~~~~~~~~~~------~~~w~~~~~~k~  219 (225)
                      ..|..+....      .+.|.-+.+.|.
T Consensus       215 ~~F~~V~~y~~~vPs~~~~w~f~~aS~~  242 (312)
T d1uira_         215 EAFRYVRSYKNHIPGFFLNFGFLLASDA  242 (312)
T ss_dssp             TTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             HhCceEEEEEeeeCCcCCCCEeEEEeCC
Confidence            6665444432      346877777764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.86  E-value=6.6e-09  Score=90.33  Aligned_cols=137  Identities=21%  Similarity=0.226  Sum_probs=93.2

Q ss_pred             CCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc----C----------CCeEEEEeCCHHHHHHHHHHHHh
Q 041459           40 GEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF----G----------AAMSVGVDIDPQAIKSAHQNAAL  103 (225)
Q Consensus        40 ~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~----~----------~~~v~~vDi~~~~l~~a~~~~~~  103 (225)
                      |.+.|.+.+.+++...+  .++.+|+|.+||+|.+.+.+.+.    .          ...++|+|+++.+...|+.++..
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            44555555555555443  35789999999999998876542    1          13589999999999999999998


Q ss_pred             cCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------------------HH
Q 041459          104 NNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------------LL  163 (225)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------------~~  163 (225)
                      ++...........+.-..                       ....+||+|++|||+..                    ..
T Consensus       222 ~g~~~~~~~i~~~d~l~~-----------------------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~  278 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEK-----------------------EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQL  278 (425)
T ss_dssp             TTCCSSCCSEEECCTTTS-----------------------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHH
T ss_pred             cCCccccceeecCchhhh-----------------------hcccccceEEecCCCCCCccccchhhhhhcccccccHHH
Confidence            887644444444332111                       14568999999999732                    23


Q ss_pred             HHHHHHHHhccCCeEEEEecc---C-CC-cHHHHHHHHHhh
Q 041459          164 QLADHIVSYAKPGAVVGISGI---L-SE-QLPHIINRYSEF  199 (225)
Q Consensus       164 ~~l~~~~~~LkpgG~l~~~~~---~-~~-~~~~~~~~~~~~  199 (225)
                      .++..+.+.|++||.+.+...   . .. ....+++.+-+.
T Consensus       279 ~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~  319 (425)
T d2okca1         279 NFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD  319 (425)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHh
Confidence            578999999999998766322   1 22 334566665543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.85  E-value=7.5e-09  Score=80.68  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=70.3

Q ss_pred             CCCcEEEEcccccH----HHHHHHhc-----CCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCcc--eEEEecC-CCC
Q 041459           58 GGELFLDYGTGSGI----LGIAAIKF-----GAAMSVGVDIDPQAIKSAHQNAALNN----IGPKKM--KLHLVPD-RTF  121 (225)
Q Consensus        58 ~~~~vlDiGcGtG~----~~~~l~~~-----~~~~v~~vDi~~~~l~~a~~~~~~~~----~~~~~~--~~~~~~~-~~~  121 (225)
                      +..+||++|||||.    +++.+.+.     ..-+++|.|+++.+++.|++......    ......  .+..... ...
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            34599999999994    44444432     12369999999999999986653211    000000  0111111 000


Q ss_pred             CccccccccccccccccccccCC-CCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEe
Q 041459          122 PASMNERVDGIVEDLSSHEIRGI-SETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      ...........+.+...|.+... ...+.||+|+|..++..     ...+++.+.+.|+|||++++.
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            01111222222222222222211 13568999999665532     467899999999999999883

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.84  E-value=1.5e-08  Score=84.45  Aligned_cols=142  Identities=13%  Similarity=0.120  Sum_probs=95.1

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+++||-+|.|.|.++..+++. +..+++.+|+++.+++.|++....+.  +...++.+...|+..           +|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~-----------~l  173 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE-----------FL  173 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-----------HH
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH-----------HH
Confidence            35789999999999999998885 56789999999999999998765322  333456666555422           22


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~  202 (225)
                      ..          ..++||+|+++.+-..       -.++++.+.+.|+|||+++......    +....+.+.++..|..
T Consensus       174 ~~----------~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~  243 (312)
T d2b2ca1         174 KN----------HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA  243 (312)
T ss_dssp             HH----------CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSE
T ss_pred             Hh----------CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccce
Confidence            11          3568999999754321       2467889999999999999853221    2234455555555544


Q ss_pred             hccc-------ccCCceEEEeeee
Q 041459          203 ILLS-------EMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~~-------~~~~w~~~~~~k~  219 (225)
                      +...       ..|.|.-+.+.|.
T Consensus       244 v~~y~~~vPtyp~G~w~f~~aSk~  267 (312)
T d2b2ca1         244 VTYAQSIVSTYPSGSMGYLICAKN  267 (312)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             EEEeeeccCCcCCccceeeEEECC
Confidence            3332       3578887777664

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.9e-08  Score=81.89  Aligned_cols=142  Identities=14%  Similarity=0.138  Sum_probs=97.2

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..+++||-+|.|.|..+..+.+. +..+++.+|+++.+++.|++....+  .....++.+...|+..+           +
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~-----------l  145 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-----------M  145 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----------H
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH-----------H
Confidence            35689999999999999998886 5789999999999999999876532  23345677776654322           2


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------HHHHHHHHHHhccCCeEEEEeccCC----CcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS----EQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~  202 (225)
                      ..          ..++||+|+++..-..       -.++++.+.+.|+|||++++.....    .....+.+.++..|..
T Consensus       146 ~~----------~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~  215 (285)
T d2o07a1         146 KQ----------NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV  215 (285)
T ss_dssp             HT----------CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred             hc----------CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCe
Confidence            11          3568999999754211       2357889999999999999853221    2223445555555544


Q ss_pred             hcc-------cccCCceEEEeeee
Q 041459          203 ILL-------SEMDDWTCVSGTKK  219 (225)
Q Consensus       203 ~~~-------~~~~~w~~~~~~k~  219 (225)
                      +..       ...+.|.-+.+.|+
T Consensus       216 v~~y~~~vP~~~~g~w~f~~aSk~  239 (285)
T d2o07a1         216 VAYAYCTIPTYPSGQIGFMLCSKN  239 (285)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             eeEEeeeeeecCCCCeEEEEEECC
Confidence            332       23578987777765

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=5.3e-08  Score=80.47  Aligned_cols=144  Identities=14%  Similarity=0.124  Sum_probs=98.6

Q ss_pred             cCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCcceEEEecCCCCCccccccccccc
Q 041459           57 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ...++||-+|.|.|..+..+++. +..+++++|+++.+++.|++....+  ...+.++.+...|+..+           +
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~-----------l  147 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-----------L  147 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-----------H
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH-----------H
Confidence            35689999999999999998886 5678999999999999999876432  23445666766554221           1


Q ss_pred             cccccccccCCCCCCceeEEEeccchh--H-----HHHHHHHHHHhccCCeEEEEeccC----CCcHHHHHHHHHhhhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN--P-----LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLED  202 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~--~-----~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~~~~~~~~  202 (225)
                      .+.         ..++||+|+++..-.  .     -.++++.+.+.|+|||+++.....    .+....+.+.+++.|..
T Consensus       148 ~~~---------~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~  218 (290)
T d1xj5a_         148 KNA---------AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG  218 (290)
T ss_dssp             HTS---------CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred             hhc---------cccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhccc
Confidence            110         346899999865421  1     256899999999999999985332    12334455566655532


Q ss_pred             h--------cccccCCceEEEeeeec
Q 041459          203 I--------LLSEMDDWTCVSGTKKR  220 (225)
Q Consensus       203 ~--------~~~~~~~w~~~~~~k~~  220 (225)
                      .        .....|.|.-+.+.|+.
T Consensus       219 ~~~y~~~~vPty~~g~w~f~~as~~~  244 (290)
T d1xj5a_         219 SVNYAWTSVPTYPSGVIGFMLCSTEG  244 (290)
T ss_dssp             CEEEEEEECTTSGGGEEEEEEEECSS
T ss_pred             ceeEeeEeeeeecCCceEEEEEeCCC
Confidence            2        22235788878777653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=9e-08  Score=79.86  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=83.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||++||+|+-+..++..  ....+++.|+++.-+...++++...++.+  +.....+...+         .. 
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~--i~~~~~d~~~~---------~~-  181 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN--VILFHSSSLHI---------GE-  181 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS--EEEESSCGGGG---------GG-
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc--ccccccccccc---------cc-
Confidence            568999999999999998887763  45679999999999999999999888764  32222221111         00 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEe-cc-CC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGIS-GI-LS  186 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~-~~-~~  186 (225)
                                  ....||.|+++.|...                         ..+++.++.++|||||+++.+ |- ..
T Consensus       182 ------------~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         182 ------------LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             ------------GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             ------------ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence                        3567999999877210                         246789999999999987764 33 33


Q ss_pred             CcHHHHHHHH
Q 041459          187 EQLPHIINRY  196 (225)
Q Consensus       187 ~~~~~~~~~~  196 (225)
                      .+.++..+.+
T Consensus       250 eENE~VV~~~  259 (313)
T d1ixka_         250 EENEFVIQWA  259 (313)
T ss_dssp             GGTHHHHHHH
T ss_pred             HhHHHHHHHH
Confidence            4444444443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=9.9e-08  Score=78.54  Aligned_cols=120  Identities=18%  Similarity=0.126  Sum_probs=84.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      +++|.+|||+++|.|+-+..++.. ...+++++|+++.-+...+.++...++.+  +.....+....        ...  
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~--~~~~~~~~~~~--------~~~--  167 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA--TVKQGDGRYPS--------QWC--  167 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC--EEEECCTTCTH--------HHH--
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc--eeeeccccccc--------hhc--
Confidence            567899999999999999988765 34789999999999999999999998764  22222111110        000  


Q ss_pred             ccccccccCCCCCCceeEEEeccchhH-------------------------HHHHHHHHHHhccCCeEEEEe-cc-CCC
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGIS-GI-LSE  187 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~-~~-~~~  187 (225)
                                 ....||.|+++.|...                         ...++.++.+.|||||+++.+ |- ...
T Consensus       168 -----------~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~  236 (284)
T d1sqga2         168 -----------GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  236 (284)
T ss_dssp             -----------TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             -----------ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence                       3567999999877310                         346799999999999998775 33 334


Q ss_pred             cHHHHHH-HHHh
Q 041459          188 QLPHIIN-RYSE  198 (225)
Q Consensus       188 ~~~~~~~-~~~~  198 (225)
                      +.++..+ .+++
T Consensus       237 ENE~vv~~~l~~  248 (284)
T d1sqga2         237 ENSLQIKAFLQR  248 (284)
T ss_dssp             GTHHHHHHHHHH
T ss_pred             hCHHHHHHHHHh
Confidence            4444444 4443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.71  E-value=6.8e-09  Score=81.64  Aligned_cols=110  Identities=21%  Similarity=0.174  Sum_probs=70.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ..++.+|||.|||+|.++..+.+.  ...+++|+|+++.++..+++           ......+....            
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~-----------~~~~~~~~~~~------------   73 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW-----------AEGILADFLLW------------   73 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT-----------EEEEESCGGGC------------
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc-----------ceeeeeehhcc------------
Confidence            346889999999999998877653  45679999999865433221           11222211110            


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH--------------------------------HHHHHHHHHHhccCCeEEEE
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP--------------------------------LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------------------------~~~~l~~~~~~LkpgG~l~~  181 (225)
                                 ....+||++++|+|+..                                +..++..+.+.||+||.+.+
T Consensus        74 -----------~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          74 -----------EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             -----------CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----------ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence                       14568999999999521                                23457888999999999877


Q ss_pred             ec---cC-CCcHHHHHHHHHhh
Q 041459          182 SG---IL-SEQLPHIINRYSEF  199 (225)
Q Consensus       182 ~~---~~-~~~~~~~~~~~~~~  199 (225)
                      ..   +. ......+++.+.+.
T Consensus       143 I~p~~~l~~~~~~~lR~~l~~~  164 (223)
T d2ih2a1         143 VVPATWLVLEDFALLREFLARE  164 (223)
T ss_dssp             EEEGGGGTCGGGHHHHHHHHHH
T ss_pred             EEeeeeccCcchHHHHHHHHhc
Confidence            42   22 23445555555543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=1.5e-07  Score=72.33  Aligned_cols=121  Identities=15%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|+|+||++|.++..+++.  ....++++|+.+           ...+.+  ......+....     .......
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-----------~~~i~~--~~~~~~d~~~~-----~~~~~~~   81 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----------MDPIVG--VDFLQGDFRDE-----LVMKALL   81 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----------CCCCTT--EEEEESCTTSH-----HHHHHHH
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-----------ccccCC--ceEeecccccc-----hhhhhhh
Confidence            678999999999999999988763  457899999876           223332  33444333221     0001110


Q ss_pred             cccccccccCCCCCCceeEEEeccchh--------H------HHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLN--------P------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~--------~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                      .         .....++|+|+++...+        +      ....+.-+.+.||+||.+++-.+......++...++..
T Consensus        82 ~---------~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~  152 (180)
T d1ej0a_          82 E---------RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  152 (180)
T ss_dssp             H---------HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH
T ss_pred             h---------hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhh
Confidence            0         01456899999976632        1      12346678899999999999888888888888888877


Q ss_pred             hhhh
Q 041459          200 LEDI  203 (225)
Q Consensus       200 ~~~~  203 (225)
                      |..+
T Consensus       153 F~~V  156 (180)
T d1ej0a_         153 FTKV  156 (180)
T ss_dssp             EEEE
T ss_pred             cCEE
Confidence            7543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.8e-07  Score=73.54  Aligned_cols=99  Identities=19%  Similarity=0.172  Sum_probs=79.8

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+++|+|||.|.-++.++- .+..+++.+|.+..-+...+......++.+  +.+...+.+...              
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n--v~v~~~R~E~~~--------------  128 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN--IEPVQSRVEEFP--------------  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS--EEEEECCTTTSC--------------
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc--eeeeccchhhhc--------------
Confidence            568999999999999998775 577899999999999999998888888764  666665555431              


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               ...+||+|++.. +..+..+++.+.+.++++|.+++.
T Consensus       129 ---------~~~~fD~V~sRA-~~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         129 ---------SEPPFDGVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             ---------CCSCEEEEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ---------cccccceehhhh-hcCHHHHHHHHHHhcCCCcEEEEE
Confidence                     356799998754 455677888889999999998884

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=7.3e-08  Score=85.79  Aligned_cols=139  Identities=19%  Similarity=0.231  Sum_probs=89.8

Q ss_pred             CCCchHHHHHHHHHhhc--cCCCcEEEEcccccHHHHHHHhc----C---------------CCeEEEEeCCHHHHHHHH
Q 041459           40 GEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF----G---------------AAMSVGVDIDPQAIKSAH   98 (225)
Q Consensus        40 ~~~~~~~~~~~~L~~~~--~~~~~vlDiGcGtG~~~~~l~~~----~---------------~~~v~~vDi~~~~l~~a~   98 (225)
                      |.+-|.+.+.+++..++  .++.+|+|.+||+|.+.+.+.+.    .               ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            56666666666665553  35779999999999998876542    1               125899999999999999


Q ss_pred             HHHHhcCCCCCcc---eEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH--------------
Q 041459           99 QNAALNNIGPKKM---KLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP--------------  161 (225)
Q Consensus        99 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~--------------  161 (225)
                      -|+..++......   .....  +.+..                   ......+||+|++|||+..              
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~--~~l~~-------------------d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~  282 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLG--NTLGS-------------------DGENLPKAHIVATNPPFGSAAGTNITRTFVHPT  282 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEES--CTTSH-------------------HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCC
T ss_pred             HHHHhhcccccccccchhhhh--hhhhh-------------------cccccccceeEEecCCccccccccchhhhcccc
Confidence            9998777542110   11111  11100                   0003467999999999842              


Q ss_pred             ---HHHHHHHHHHhccCCeEEEEe---ccC--CCcHHHHHHHHHhh
Q 041459          162 ---LLQLADHIVSYAKPGAVVGIS---GIL--SEQLPHIINRYSEF  199 (225)
Q Consensus       162 ---~~~~l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~~~  199 (225)
                         ...++.++.+.||+||++.+.   .+.  ......+++.+-+.
T Consensus       283 ~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~  328 (524)
T d2ar0a1         283 SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDK  328 (524)
T ss_dssp             SCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHc
Confidence               234789999999999997764   221  23334566665543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.57  E-value=2.3e-07  Score=74.31  Aligned_cols=89  Identities=13%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++++|||+|||+|.++..+++.+ .+++++|+++.+++.++++....    ..+.+..+|...+..            
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~----~n~~i~~~D~l~~~~------------   81 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKF------------   81 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCC------------
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc----cchhhhhhhhhhccc------------
Confidence            4578999999999999999999875 57999999999999988765422    345566554433210            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS  171 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~  171 (225)
                                +......|+.|.||+.-..++..+..
T Consensus        82 ----------~~~~~~~vv~NLPYnIss~il~~ll~  107 (235)
T d1qama_          82 ----------PKNQSYKIFGNIPYNISTDIIRKIVF  107 (235)
T ss_dssp             ----------CSSCCCEEEEECCGGGHHHHHHHHHH
T ss_pred             ----------cccccceeeeeehhhhhHHHHHHHHh
Confidence                      22333467899999887777766653

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.1e-06  Score=72.50  Aligned_cols=120  Identities=9%  Similarity=-0.026  Sum_probs=80.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|||++||+|+-+.+++..  +..+++++|+++.-++..++++...++.+  +.+...+...+..          
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~--~~~~~~d~~~~~~----------  159 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC--CELAEEDFLAVSP----------  159 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCGGGSCT----------
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc--eeeeehhhhhhcc----------
Confidence            457899999999999998887753  46789999999999999999999999875  4444443322210          


Q ss_pred             cccccccccCCCCCCceeEEEeccchhH---------------------------HHHHHHHHHHhccCCeEEEEe-cc-
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNP---------------------------LLQLADHIVSYAKPGAVVGIS-GI-  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~-~~-  184 (225)
                               .....++||.|++++|...                           ...++.++. .++|||+++.+ |- 
T Consensus       160 ---------~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         160 ---------SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             ---------TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             ---------cccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence                     0002357999999877210                           123455555 47899887664 33 


Q ss_pred             CCCcHHHHHHHHH
Q 041459          185 LSEQLPHIINRYS  197 (225)
Q Consensus       185 ~~~~~~~~~~~~~  197 (225)
                      ...+.++..+.+-
T Consensus       230 ~~~ENe~vV~~~L  242 (293)
T d2b9ea1         230 CQEENEDVVRDAL  242 (293)
T ss_dssp             CGGGTHHHHHHHH
T ss_pred             ChhHhHHHHHHHH
Confidence            3344445444433

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=6.6e-07  Score=68.77  Aligned_cols=120  Identities=16%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +++|..++|..+|.|..+..+++. ..+++|+|.++.+++.|++..      ...+.+.......+        ...+..
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~------~~~~~~~~~~f~~~--------~~~l~~   80 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH------LPGLTVVQGNFRHL--------KRHLAA   80 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC------CTTEEEEESCGGGH--------HHHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc------ccceeEeehHHHHH--------HHHHHH
Confidence            568999999999999999988876 357999999999999887531      12344443322111        111110


Q ss_pred             cccccccCCCCCCceeEEEeccch------------hHHHHHHHHHHHhccCCeEEEEeccCCCcHHHHHHHHHhh
Q 041459          136 LSSHEIRGISETEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  199 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  199 (225)
                               ...+.+|.|+.+..+            ......++...+.|++||.+++..+...+...+.+.+++.
T Consensus        81 ---------~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~  147 (182)
T d1wg8a2          81 ---------LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRES  147 (182)
T ss_dssp             ---------TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHH
T ss_pred             ---------cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhc
Confidence                     034679999987654            2244578889999999999998777655555566665554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.8e-07  Score=72.45  Aligned_cols=91  Identities=13%  Similarity=0.261  Sum_probs=69.4

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.+++.|||+|+|+|.++..+++.+ .+++++|+++.+++..++........ +.+.+...|....              
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~-~~~~~i~~D~l~~--------------   82 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKT--------------   82 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTS--------------
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccc-cchhhhHHHHhhh--------------
Confidence            4468899999999999999999886 57999999999999998877644332 4566666555433              


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHh
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSY  172 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~  172 (225)
                                ....++.|+.|.||+.-..++..+...
T Consensus        83 ----------~~~~~~~vV~NLPY~Iss~il~~~~~~  109 (278)
T d1zq9a1          83 ----------DLPFFDTCVANLPYQISSPFVFKLLLH  109 (278)
T ss_dssp             ----------CCCCCSEEEEECCGGGHHHHHHHHHHC
T ss_pred             ----------hhhhhhhhhcchHHHHHHHHHHHHHhh
Confidence                      233467899999998877777766544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.39  E-value=3.1e-08  Score=79.95  Aligned_cols=95  Identities=17%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      +.++++|||+|||+|.++..+++.+ .+++++|+++.+++.++++....    .++.+...|...+..            
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~----~n~~ii~~D~l~~~~------------   89 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN----TRVTLIHQDILQFQF------------   89 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC----SEEEECCSCCTTTTC------------
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc----cchhhhhhhhhcccc------------
Confidence            4467899999999999999998875 57999999999887776543211    234555544433311            


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCe
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGA  177 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG  177 (225)
                                +....+.|++|.||+.-..++..+...-....
T Consensus        90 ----------~~~~~~~vv~NLPY~Ist~il~~~l~~~~~~~  121 (245)
T d1yuba_          90 ----------PNKQRYKIVGNIPYHLSTQIIKKVVFESRASD  121 (245)
T ss_dssp             ----------CCSSEEEEEEECCSSSCHHHHHHHHHHCCCEE
T ss_pred             ----------ccceeeeEeeeeehhhhHHHHHHHhhhchhhh
Confidence                      34567889999999876666555544433433

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.28  E-value=2.9e-06  Score=68.03  Aligned_cols=93  Identities=18%  Similarity=0.184  Sum_probs=65.7

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +..+|+|+|||+|.++..+++ ++..+++..|+ |.+++       ..... ++++...  ++.+.              
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~-~ri~~~~--gd~~~--------------  135 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPL-SGIEHVG--GDMFA--------------  135 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCC-TTEEEEE--CCTTT--------------
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCC-CCeEEec--CCccc--------------
Confidence            347999999999999998765 68888999997 44442       12221 3444443  33331              


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCCeEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               +....|++++...+++     -..+++++++.|+|||.+++.+.
T Consensus       136 ---------~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         136 ---------SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             ---------CCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------ccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence                     2235699998777654     45689999999999999998765

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=5.6e-06  Score=66.04  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=77.3

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+++|+|+|.|.-++.++- .+..+++.+|.+..-+...+......++.+  +.+.....+.+..             
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n--~~i~~~R~E~~~~-------------  134 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN--TTFCHDRAETFGQ-------------  134 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--EEEEESCHHHHTT-------------
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC--cEEEeehhhhccc-------------
Confidence            467999999999999998775 688899999999999999888888888875  4444433221100             


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                            .....++||+|++.. +..+..+++.+...+++||.+++.
T Consensus       135 ------~~~~~~~~D~v~sRA-va~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         135 ------RKDVRESYDIVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             ------CTTTTTCEEEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ------cccccccceEEEEhh-hhCHHHHHHHHhhhcccCCEEEEE
Confidence                  000246799998854 455677888899999999998874

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.07  E-value=1.3e-05  Score=64.06  Aligned_cols=93  Identities=18%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CCCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ...+|+|+|||+|.++..+++ ++..+++..|. |.+++.+       +.. +++++...+  .+.              
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~~-~rv~~~~gD--~f~--------------  134 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SGS-NNLTYVGGD--MFT--------------  134 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CCB-TTEEEEECC--TTT--------------
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------ccc-CceEEEecC--ccc--------------
Confidence            346899999999999998765 67889999998 4454322       222 345554433  331              


Q ss_pred             ccccccCCCCCCceeEEEeccchhH-----HHHHHHHHHHhccCC---eEEEEecc
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP-----LLQLADHIVSYAKPG---AVVGISGI  184 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~-----~~~~l~~~~~~Lkpg---G~l~~~~~  184 (225)
                               +...+|++++...+++     -..+++++++.|+||   |.+++.+.
T Consensus       135 ---------~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         135 ---------SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             ---------CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             ---------CCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence                     2346899999777765     356899999999998   66776544

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.06  E-value=2.6e-05  Score=61.82  Aligned_cols=102  Identities=9%  Similarity=0.033  Sum_probs=61.7

Q ss_pred             CCCcEEEEcccccHHHHHHHh----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           58 GGELFLDYGTGSGILGIAAIK----F-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~----~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      ++++|||+|++.|.-+..++.    . ...+++++|+++.....+.     ..  .+++.+..++....     .....+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~--~~~I~~i~gDs~~~-----~~~~~l  147 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SD--MENITLHQGDCSDL-----TTFEHL  147 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GG--CTTEEEEECCSSCS-----GGGGGG
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----cc--ccceeeeecccccH-----HHHHHH
Confidence            578999999999977766543    2 4578999999875432211     11  13466666554332     111111


Q ss_pred             ccccccccccCCCCCCceeEEEeccc--hhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                   ....+|+|+.+..  ..+...-+ ...++|++||++++.+..
T Consensus       148 -------------~~~~~dlIfID~~H~~~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         148 -------------REMAHPLIFIDNAHANTFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             -------------SSSCSSEEEEESSCSSHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             -------------HhcCCCEEEEcCCcchHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence                         3445788888643  22211122 256899999999997653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.7e-05  Score=63.66  Aligned_cols=94  Identities=16%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..+++.|||+|||+|.++..+++.+ .+++++|+++.+++..+....    ..+++.+...|...+  ++.+....    
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~----~~~~~~ii~~D~l~~--~~~~~~~~----   87 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMTF--NFGELAEK----   87 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGGC--CHHHHHHH----
T ss_pred             CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhh----hccchhHHhhhhhhh--cccccccc----
Confidence            3468899999999999999999875 569999999999988875432    113455555544332  11111100    


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHH
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVS  171 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~  171 (225)
                                ...+ -.|+.|.||+.-..++..+..
T Consensus        88 ----------~~~~-~~vvgNlPY~Iss~Il~~l~~  112 (252)
T d1qyra_          88 ----------MGQP-LRVFGNLPYNISTPLMFHLFS  112 (252)
T ss_dssp             ----------HTSC-EEEEEECCTTTHHHHHHHHHT
T ss_pred             ----------cCCC-eEEEecchHHHHHHHHHHhcc
Confidence                      1222 367799999887777666543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.91  E-value=3.3e-05  Score=61.48  Aligned_cols=92  Identities=13%  Similarity=0.131  Sum_probs=59.9

Q ss_pred             CCcEEEEcccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           59 GELFLDYGTGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ..+|+|+|||+|.+++.+++ .+..++++.|+-+ .++.       .... .++....  ++.+.               
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~-------~~~~-~r~~~~~--~d~~~---------------  135 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIED-------APSY-PGVEHVG--GDMFV---------------  135 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTT-------CCCC-TTEEEEE--CCTTT---------------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhh-------cccC-CceEEec--ccccc---------------
Confidence            46899999999999998775 6778999999855 3321       1111 2333333  32221               


Q ss_pred             cccccCCCCCCceeEEEeccch-----hHHHHHHHHHHHhccCCeEEEEecc
Q 041459          138 SHEIRGISETEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                              +....|+++....+     .....+++++++.|+|||.+++.+.
T Consensus       136 --------~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         136 --------SIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             --------CCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             --------cCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence                    11224555554333     3356789999999999999888644

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.85  E-value=3.1e-05  Score=61.71  Aligned_cols=118  Identities=8%  Similarity=0.032  Sum_probs=67.1

Q ss_pred             ccCCCcEEEEcccccHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCC-CcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGP-KKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGtG~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      ++++.+|+|+|||.|..+..++... ...+.|.++--..-.     .+...... ..+ +.+......        ..  
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-----~P~~~~~~~~ni-~~~~~~~dv--------~~--  127 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-----EPIPMSTYGWNL-VRLQSGVDV--------FF--  127 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCCCCSTTGGG-EEEECSCCT--------TT--
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-----CCcccccccccc-ccchhhhhH--------Hh--
Confidence            6677899999999999999988763 456778877321000     00000000 001 111111111        01  


Q ss_pred             cccccccccCCCCCCceeEEEeccch-------hHH--HHHHHHHHHhccCCeEEEEeccC--CCcHHHHHHHHHhhh
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILL-------NPL--LQLADHIVSYAKPGAVVGISGIL--SEQLPHIINRYSEFL  200 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~-------~~~--~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~~  200 (225)
                                 .+...+|+|+|+...       +..  ..+++-+.++|+|||-+++-.+.  ..+..+..+.++..|
T Consensus       128 -----------l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~f  194 (257)
T d2p41a1         128 -----------IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKH  194 (257)
T ss_dssp             -----------SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             -----------cCCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHh
Confidence                       156789999997542       222  25677788999999998885443  334444444555444

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.72  E-value=0.00015  Score=53.91  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=65.9

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++++++|+-+|||. |.++..+++....+++++|.++.-++.|++.    +..   ..+........   . ......+
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga~---~~~~~~~~~~~---~-~~~~~~~   91 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD---VTLVVDPAKEE---E-SSIIERI   91 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEECCTTTSC---H-HHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CCc---EEEeccccccc---c-chhhhhh
Confidence            367899999999985 6666666664335899999999999888763    211   11111111100   0 0000011


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                      .+.         ....+|+++-...-   ...++.+.++++++|++++.+...
T Consensus        92 ~~~---------~g~g~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          92 RSA---------IGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HHH---------SSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             hcc---------cccCCceeeecCCC---hHHHHHHHHHHhcCCceEEEecCC
Confidence            100         24568999864432   245667788999999999876543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00017  Score=53.82  Aligned_cols=107  Identities=19%  Similarity=0.187  Sum_probs=67.4

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .++++++|+=+|||+ |.++..+++ .|..+++++|.++.-++.|++.    +.+    .....+.+..     ......
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~----~~~~~~~~~~-----~~~~~~   89 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD----LVLQISKESP-----QEIARK   89 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS----EEEECSSCCH-----HHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc----cccccccccc-----cccccc
Confidence            367899999999987 455555555 5777899999999999888753    322    1222211111     000111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                      ++..         ....+|+++....-   ...++.+.+++++||++++.....
T Consensus        90 ~~~~---------~g~g~Dvvid~~G~---~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          90 VEGQ---------LGCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HHHH---------HTSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             cccc---------CCCCceEEEeccCC---chhHHHHHHHhcCCCEEEEEecCC
Confidence            0000         24578998875433   345678889999999999876643

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.50  E-value=7.7e-05  Score=59.57  Aligned_cols=108  Identities=15%  Similarity=0.085  Sum_probs=70.2

Q ss_pred             CCCcEEEEcccccHHHHHHHhcC-----------------------------------------CCeEEEEeCCHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFG-----------------------------------------AAMSVGVDIDPQAIKS   96 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~-----------------------------------------~~~v~~vDi~~~~l~~   96 (225)
                      ++..++|..||+|++.+.++...                                         ...++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            34579999999999998754310                                         0135799999999998


Q ss_pred             H---HHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCCCCCceeEEEeccchhH------------
Q 041459           97 A---HQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGISETEKYDVVIANILLNP------------  161 (225)
Q Consensus        97 a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~------------  161 (225)
                      |   +.|+...++. +.+.+...+.-...    .. .            ........++|++||||..            
T Consensus       130 A~~~r~n~~~Agl~-~~i~i~~~d~f~~~----~~-~------------~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~  191 (249)
T d1o9ga_         130 ARRLRERLTAEGGA-LPCAIRTADVFDPR----AL-S------------AVLAGSAPDVVLTDLPYGERTHWEGQVPGQP  191 (249)
T ss_dssp             HHHHHHHHHHTTSS-CCEEEEECCTTCGG----GH-H------------HHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred             HHHHHHHHHHcCCC-ceeeeeecchhccC----cc-h------------hccCCCCCCEEEeCCCccccccccccchHHH
Confidence            8   4588888877 44555544331110    00 0            0113456799999999843            


Q ss_pred             HHHHHHHHHHhccCCeEEEEec
Q 041459          162 LLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       162 ~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +..+...+.+.+.....++++.
T Consensus       192 ~~~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         192 VAGLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHccCCCCcEEEEeC
Confidence            4556667777786666666653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.50  E-value=0.00012  Score=57.58  Aligned_cols=55  Identities=25%  Similarity=0.340  Sum_probs=45.3

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      ++..++...-.+|..|||.+||+|+.+.++.+.+ .+++|+|+++..++.|++++.
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            3344444445689999999999999999888876 569999999999999998864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.45  E-value=5e-05  Score=57.29  Aligned_cols=104  Identities=22%  Similarity=0.288  Sum_probs=67.2

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++|+=+|||. |.+++.+++ .|..+|+++|.++.-++.|++.    +..    .......+.+    .+.+.. 
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~----~~i~~~~~~~----~~~v~~-   90 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT----DILNYKNGHI----EDQVMK-   90 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS----EEECGGGSCH----HHHHHH-
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc----ccccccchhH----HHHHHH-
Confidence            367899999999987 777777776 5777899999999988888753    221    1111111111    011111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                 ......+|+|+-.....   ..++...++++|+|.+++....
T Consensus        91 -----------~t~g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          91 -----------LTNGKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             -----------HTTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred             -----------HhhccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEeec
Confidence                       11345699998755432   3456777899999999986553

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.45  E-value=9.9e-05  Score=59.80  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        46 ~~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      .++.+++...-.+|+.|||.+||+|+.+.++.+.+ .+++|+|++++.++.|++++....
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHhcc
Confidence            34444455555689999999999999999988886 559999999999999998876443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.43  E-value=7.1e-05  Score=57.49  Aligned_cols=107  Identities=17%  Similarity=0.334  Sum_probs=69.3

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++|+-+|||. |.++..+++ .+..+++++|.++.-++.|++.    +..    .........+    .+.... 
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~----~~~~~~~~~~----~~~i~~-   88 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE----IADLSLDTPL----HEQIAA-   88 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE----EEETTSSSCH----HHHHHH-
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc----EEEeCCCcCH----HHHHHH-
Confidence            477899999999998 556666665 5888999999999999888754    311    1111111111    011111 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchh------------HHHHHHHHHHHhccCCeEEEEeccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLN------------PLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                 +.....+|+++-.....            .....++.+.++++|||.+++.++.
T Consensus        89 -----------~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          89 -----------LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             -----------HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             -----------HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence                       11455789988643211            1245788999999999999987653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00026  Score=53.25  Aligned_cols=106  Identities=16%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-+|||. |.+++.+++ .|+.+|+++|.++..++.|++.    +..    .......... .   +..... 
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~-~---~~~~~i-   92 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD----LTLNRRETSV-E---ERRKAI-   92 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS----EEEETTTSCH-H---HHHHHH-
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce----EEEeccccch-H---HHHHHH-
Confidence            56789999999985 667776665 5777899999999999888753    321    1111111111 0   110000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                              ........+|+|+....-   ...++...+++++||++++.+..
T Consensus        93 --------~~~~~~~g~Dvvid~vG~---~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          93 --------MDITHGRGADFILEATGD---SRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             --------HHHTTTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             --------HHhhCCCCceEEeecCCc---hhHHHHHHHHhcCCCEEEEEeec
Confidence                    011134569999865432   23456778899999999886543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.28  E-value=0.00026  Score=56.28  Aligned_cols=57  Identities=25%  Similarity=0.299  Sum_probs=46.7

Q ss_pred             HHHHHHHhhccCCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 041459           47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALN  104 (225)
Q Consensus        47 ~~~~~L~~~~~~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~  104 (225)
                      ++..++...-.+|+.|||.+||+|+.++++.+.+ .+++|+|+++...+.|++++...
T Consensus       196 L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            3334444445689999999999999999888876 56999999999999999998743

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.10  E-value=0.00038  Score=52.05  Aligned_cols=101  Identities=16%  Similarity=0.209  Sum_probs=65.5

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|.+|+=+|||. |.++..+++ .+...++++|.++.-++.|++.    +..    .+...+.+..    .+.+... 
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~----~~i~~~~~~~----~~~i~~~-   92 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT----HVINSKTQDP----VAAIKEI-   92 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS----EEEETTTSCH----HHHHHHH-
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe----EEEeCCCcCH----HHHHHHH-
Confidence            67899999999986 455555554 5888899999999988888753    322    1222221111    1111121 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                  .++.+|+|+-+..-.   ..++...++++|+|.+++.+.
T Consensus        93 ------------t~gg~D~vid~~G~~---~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          93 ------------TDGGVNFALESTGSP---EILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             ------------TTSCEEEEEECSCCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred             ------------cCCCCcEEEEcCCcH---HHHHHHHhcccCceEEEEEee
Confidence                        345799998654332   345677889999999998654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.92  E-value=0.00059  Score=54.26  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-------CcceEEEecCCCCCcccccccccc
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGP-------KKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+|||..||.|.-+..++..|. +|+++|.+|......+.++.......       .++++...+...+           
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~-----------  157 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-----------  157 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-----------
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH-----------
Confidence            4899999999999999999875 59999999988777776665332211       1345555443111           


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhH
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNP  161 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~  161 (225)
                      +        .+  ....||+|+.+|++..
T Consensus       158 L--------~~--~~~~~DvIYlDPMFp~  176 (250)
T d2oyra1         158 L--------TD--ITPRPQVVYLDPMFPH  176 (250)
T ss_dssp             S--------TT--CSSCCSEEEECCCCCC
T ss_pred             H--------hc--cCCCCCEEEECCCCcc
Confidence            0        01  2456999999999854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.89  E-value=0.0012  Score=49.28  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=67.8

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCCCcccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFPASMNERVDGI  132 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  132 (225)
                      +++|++|+=+|||. |.+++.+++ .|+.+++++|.++.-++.|++.    +..    ..... ..+...    ......
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~----~~i~~~~~~~~~----~~~~~~   93 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT----DCLNPRELDKPV----QDVITE   93 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS----EEECGGGCSSCH----HHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC----cccCCccchhhh----hhhHhh
Confidence            67899999999998 777777666 5888999999999988888753    322    11111 111100    000000


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCC-eEEEEeccCCC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGILSE  187 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~  187 (225)
                                  .....+|+++-....   ...++...+.+++| |.+++......
T Consensus        94 ------------~~~~G~d~vie~~G~---~~~~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2          94 ------------LTAGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             ------------HHTSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCCSSS
T ss_pred             ------------hhcCCCcEEEEeccc---chHHHHHHHHhhcCCeEEEecCCCCC
Confidence                        034579999864432   34577888899996 99998766543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.85  E-value=0.00096  Score=49.52  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++|+-+|+|. |.+++.+++ .+...++++|.++.-++.+++.    +..    .....+.+..        ...+
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~----~~i~~~~~~~--------~~~~   93 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD----HVVDARRDPV--------KQVM   93 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS----EEEETTSCHH--------HHHH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc----eeecCcccHH--------HHHH
Confidence            56889999999987 455556554 6888899999999888887753    221    1222111111        1110


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                      +         ......+|+++....-.   ..++...++++++|++++.+...
T Consensus        94 ~---------~~~~~g~d~vid~~g~~---~~~~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2          94 E---------LTRGRGVNVAMDFVGSQ---ATVDYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             H---------HTTTCCEEEEEESSCCH---HHHHHGGGGEEEEEEEEECCCSS
T ss_pred             H---------hhCCCCceEEEEecCcc---hHHHHHHHHHhCCCEEEEEeCcc
Confidence            0         11345699998754432   34677888999999999876543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.0032  Score=51.67  Aligned_cols=56  Identities=11%  Similarity=-0.040  Sum_probs=43.0

Q ss_pred             CCCcEEEEcccccHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           58 GGELFLDYGTGSGILGIAAIKF-GAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~-~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      .+..|||+|+|.|.++..+... ...+++++|+++...+..+....     .+++.+...|.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-----~~~~~ii~~D~   99 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-----GSPLQILKRDP   99 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-----TSSCEEECSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-----CCCcEEEeCch
Confidence            3568999999999999998875 56789999999999988876543     13355555544

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.82  E-value=0.0049  Score=49.84  Aligned_cols=45  Identities=24%  Similarity=0.194  Sum_probs=40.1

Q ss_pred             CCCcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           58 GGELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .+.+|+|++||.|.++..+.+.|..-+.++|+++.+++..+.|..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~   54 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC
Confidence            578999999999999998888888778999999999999888864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.72  E-value=0.0011  Score=48.73  Aligned_cols=102  Identities=13%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++|++|+=+|+|. |.++..+++....+++++|.++.-++.+++.    +.+    ...........    +..... 
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~----~~i~~~~~~~~----~~~~~~-   90 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GAS----LTVNARQEDPV----EAIQRD-   90 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS----EEEETTTSCHH----HHHHHH-
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Ccc----ccccccchhHH----HHHHHh-
Confidence            367899999999987 6666666664336899999999999888643    322    11111111110    100000 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                  ..+.++.|++...-    ..++...+.|+++|++++.+..
T Consensus        91 ------------~~g~~~~i~~~~~~----~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          91 ------------IGGAHGVLVTAVSN----SAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             ------------HSSEEEEEECCSCH----HHHHHHHTTEEEEEEEEECCCC
T ss_pred             ------------hcCCcccccccccc----hHHHHHHHHhcCCcEEEEEEec
Confidence                        12334555543332    3466788999999999986554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.62  E-value=0.0086  Score=47.93  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=36.0

Q ss_pred             CcEEEEcccccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ++|+|++||.|.+..-+.+.|..-+.++|+++.+.+..+.|.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~   42 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH   42 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence            469999999999988877778877889999999888877764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.58  E-value=0.0077  Score=44.06  Aligned_cols=89  Identities=20%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             cEEEEcccc-c-HHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           61 LFLDYGTGS-G-ILGIAAIKFG-AAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        61 ~vlDiGcGt-G-~~~~~l~~~~-~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +|+=+|||. | .++..+.+.+ ..++++.|.++..++.|++.    +..    .....+....                
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~----~~~~~~~~~~----------------   58 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GII----DEGTTSIAKV----------------   58 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSC----SEEESCGGGG----------------
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcc----hhhhhhhhhh----------------
Confidence            477789986 3 4455566665 45799999999999888754    221    0111110000                


Q ss_pred             cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                              .....|+|+...|.....+.++.+.+.++++.++.-
T Consensus        59 --------~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          59 --------EDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             --------GGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --------hccccccccccCCchhhhhhhhhhhccccccccccc
Confidence                    234679999999988888999999999999876654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00018  Score=53.51  Aligned_cols=101  Identities=13%  Similarity=0.071  Sum_probs=62.2

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++|+-+|+|. |.+++.+++ .|. +++++|.++..++.|++.    |.+   ..+...+....       ... 
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~-------~~~-   87 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDW-------GEK-   87 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCH-------HHH-
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc---EEeeccchHHH-------HHh-
Confidence            467899999999985 667776665 465 699999999988888753    322   11111111110       000 


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                   ..+.+|+++....-.. ...++...+.++|+|++++.+..
T Consensus        88 -------------~~~~~d~vi~~~~~~~-~~~~~~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          88 -------------YFDTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             -------------SCSCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECCCC
T ss_pred             -------------hhcccceEEEEecCCc-cchHHHHHHHhhccceEEEeccc
Confidence                         3456898876422111 01134677899999999986543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.44  E-value=0.0019  Score=47.31  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++++++|+=.|+|+ |.+++.+++....+++++|.++.-++.+++    .+..    .+.....+.+.    ..+... 
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~----~~~~~~~~~~~----~~~~~~-   90 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD----LVVNPLKEDAA----KFMKEK-   90 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS----EEECTTTSCHH----HHHHHH-
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc----eecccccchhh----hhcccc-
Confidence            467899999999988 555556666544579999999999888865    3322    11111111110    011111 


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                  ..+.+|+|++.. -   ...+....++++++|.+++....
T Consensus        91 ------------~~~~~~~v~~~~-~---~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          91 ------------VGGVHAAVVTAV-S---KPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             ------------HSSEEEEEESSC-C---HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             ------------cCCCceEEeecC-C---HHHHHHHHHHhccCCceEecccc
Confidence                        233455554432 2   34567888899999999986554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=49.54  Aligned_cols=46  Identities=26%  Similarity=0.463  Sum_probs=37.6

Q ss_pred             ccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHH
Q 041459           56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        56 ~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      +++|++|+=+|||. |.+++.+++ .+..+|+++|.+++-++.|++.-
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            67899999999987 455555555 57889999999999999998653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.30  E-value=0.00062  Score=50.37  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             hccCCCcEEEEcc-cc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           55 LIKGGELFLDYGT-GS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        55 ~~~~~~~vlDiGc-Gt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      .++++++|+=+|| |. |.+++.+++ .+..+++++|.++.-++.+++.    +..    .........+    .+....
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~----~~i~~~~~~~----~~~~~~   91 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD----YVINASMQDP----LAEIRR   91 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS----EEEETTTSCH----HHHHHH
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc----eeeccCCcCH----HHHHHH
Confidence            3668899999997 43 555565544 6778899999999988888753    321    1111111111    011111


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                  ......+|+++....-   ...++...++++|||++++..+..
T Consensus        92 ------------~~~~~~~d~vid~~g~---~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          92 ------------ITESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             ------------HTTTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             ------------Hhhcccchhhhccccc---chHHHhhhhhcccCCEEEEecccc
Confidence                        1135679999875432   334567788999999999865543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.20  E-value=0.0019  Score=48.14  Aligned_cols=46  Identities=24%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHH
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      .+++|++|+=+|||. |.+++.+++ .|..+|+++|.++.-++.|++.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            377899999999987 444555554 6888999999999999998753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0014  Score=48.67  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||-.|+ | .|.+++.+++.-..++++++.+++.++.+++    .+.+    .+.......+    .+.+.   
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~----~vi~~~~~~~----~~~i~---   90 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH----EVFNHREVNY----IDKIK---   90 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS----EEEETTSTTH----HHHHH---
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc----cccccccccH----HHHhh---
Confidence            668999999996 3 3677777776533468999888887777764    3432    1221111111    01111   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                               .......+|+|+.+..    ...++...++|+|+|.++..+.
T Consensus        91 ---------~~t~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          91 ---------KYVGEKGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             ---------HHHCTTCEEEEEESCH----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ---------hhhccCCceEEeeccc----HHHHHHHHhccCCCCEEEEEec
Confidence                     1114567999987543    2356778889999999998543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0017  Score=47.96  Aligned_cols=99  Identities=14%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++|+=+|||. |.+++.+++ .|. +++++|.++.-++.+++.    +.+    ......  ..      ...  
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Gad----~~i~~~--~~------~~~--   87 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD----EVVNSR--NA------DEM--   87 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS----EEEETT--CH------HHH--
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CCc----EEEECc--hh------hHH--
Confidence            367899999999986 677777776 454 567899998888777643    322    111111  00      000  


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCC
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  186 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  186 (225)
                                 ....+.+|+++....-.   ..++...+.++++|++++.....
T Consensus        88 -----------~~~~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          88 -----------AAHLKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             -----------HTTTTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECCCC-
T ss_pred             -----------HHhcCCCceeeeeeecc---hhHHHHHHHHhcCCEEEEeccCC
Confidence                       00345799988654321   12446678999999999866543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.43  E-value=0.046  Score=39.50  Aligned_cols=86  Identities=14%  Similarity=0.095  Sum_probs=57.6

Q ss_pred             cEEEEcccc-c-HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccccc
Q 041459           61 LFLDYGTGS-G-ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSS  138 (225)
Q Consensus        61 ~vlDiGcGt-G-~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (225)
                      +|.=+|+|. | .++..+.+.+ .+|++.|.+++.++.+++.    +.-.    ....+.+                   
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~----~~~~----~~~~~~~-------------------   53 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVER----QLVD----EAGQDLS-------------------   53 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT----TSCS----EEESCGG-------------------
T ss_pred             EEEEEeecHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHh----hccc----eeeeecc-------------------
Confidence            566778875 3 3444555555 4699999999888777542    2210    1110000                   


Q ss_pred             ccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          139 HEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       139 ~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                             .-...|+|+...|......+++++...++++.+++-
T Consensus        54 -------~~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          54 -------LLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             -------GGTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             -------cccccccccccCcHhhhhhhhhhhhhhcccccceee
Confidence                   234679999988888888999999999999987754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.12  E-value=0.032  Score=40.62  Aligned_cols=101  Identities=19%  Similarity=0.198  Sum_probs=61.1

Q ss_pred             hccCCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++|+=.|||. |.+++.+++ .+...++++|.++.-++.+++.-....       +...+....   ..+.....
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~-------i~~~~~~~~---~~~~~~~~   94 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC-------INPQDFSKP---IQEVLIEM   94 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEE-------ECGGGCSSC---HHHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEE-------EeCCchhhH---HHHHHHHH
Confidence            367899999999884 455555554 688999999999999888875422111       111111110   00011111


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                                   ....+|+++-...-.   ..++.+..++++||.+++
T Consensus        95 -------------~~~g~D~vid~~G~~---~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 -------------TDGGVDYSFECIGNV---KVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             -------------TTSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEE
T ss_pred             -------------cCCCCcEeeecCCCH---HHHHHHHHhhcCCceeEE
Confidence                         345799998754332   345677788999866654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.92  E-value=0.0038  Score=46.18  Aligned_cols=96  Identities=11%  Similarity=0.076  Sum_probs=58.8

Q ss_pred             hccCCCcEEEEcc-cc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccc
Q 041459           55 LIKGGELFLDYGT-GS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGI  132 (225)
Q Consensus        55 ~~~~~~~vlDiGc-Gt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (225)
                      .+++|++|+=.|+ |. |.+++.+++....++++++.++..++.+++    .+.+   ..+...          +...  
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~----------~~~~--   84 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAATYA----------EVPE--   84 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEEEGG----------GHHH--
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---eeeehh----------hhhh--
Confidence            3678999999884 43 566777776533479999999887777764    3332   111110          0000  


Q ss_pred             ccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          133 VEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                ..+....+|+|+-...     ..++...++|+++|.++..+.
T Consensus        85 ----------~~~~~~g~D~v~d~~G-----~~~~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2          85 ----------RAKAWGGLDLVLEVRG-----KEVEESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             ----------HHHHTTSEEEEEECSC-----TTHHHHHTTEEEEEEEEEC--
T ss_pred             ----------hhhccccccccccccc-----hhHHHHHHHHhcCCcEEEEeC
Confidence                      0113457999986322     235677889999999987543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.01  Score=43.65  Aligned_cols=99  Identities=18%  Similarity=0.129  Sum_probs=62.8

Q ss_pred             ccCCCcEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++|+=.|+|.  |.+++.+++....++++++.++.-.+.+++.    +.+    .+.......+    .+.+    
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~----~vi~~~~~d~----~~~v----   89 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW----QVINYREEDL----VERL----   89 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS----EEEETTTSCH----HHHH----
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe----EEEECCCCCH----HHHH----
Confidence            56889999987665  5667777775446799999999998888743    322    1222111111    1111    


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              +.......+|+|+....-.    .+......++++|.+++.
T Consensus        90 --------~~~t~g~g~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          90 --------KEITGGKKVRVVYDSVGRD----TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             --------HHHTTTCCEEEEEECSCGG----GHHHHHHTEEEEEEEEEC
T ss_pred             --------HHHhCCCCeEEEEeCccHH----HHHHHHHHHhcCCeeeec
Confidence                    1112456799988755433    345777899999998774

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.66  E-value=0.011  Score=43.75  Aligned_cols=100  Identities=19%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             ccCCCcEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||=.|++.  |..++.+++....+++++..+++.++.+++.    +..    .........+.    +....  
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~----~vi~~~~~~~~----~~~~~--   92 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD----AAFNYKTVNSL----EEALK--   92 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS----EEEETTSCSCH----HHHHH--
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh----hhcccccccHH----HHHHH--
Confidence            66899999888766  4566667776456899999999887777653    322    12221111110    11101  


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                                ......+|+|+-...    .+.++...++|+++|.++..+
T Consensus        93 ----------~~~~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          93 ----------KASPDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             ----------HHCTTCEEEEEESSC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             ----------HhhcCCCceeEEecC----chhhhhhhhhccCCCeEEeec
Confidence                      014567999986543    235678889999999998854

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.23  E-value=0.0059  Score=45.18  Aligned_cols=99  Identities=14%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             ccCCCcEEEEcc-c-ccHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGc-G-tG~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++|++||=.|+ | .|.+++.+++....+++++.-+++..+.+++    .+..    .........+    .+..    
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~----~vi~~~~~~~----~~~v----   86 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE----YVGDSRSVDF----ADEI----   86 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS----EEEETTCSTH----HHHH----
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc----ccccCCccCH----HHHH----
Confidence            567899998774 3 3566776776533567787778877766653    3422    1222111111    1111    


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              ........+|+++....-    +.++.+.++|+++|+++..
T Consensus        87 --------~~~t~~~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          87 --------LELTDGYGVDVVLNSLAG----EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             --------HHHTTTCCEEEEEECCCT----HHHHHHHHTEEEEEEEEEC
T ss_pred             --------HHHhCCCCEEEEEecccc----hHHHHHHHHhcCCCEEEEE
Confidence                    111145679999976543    3455677899999999874

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.22  E-value=0.09  Score=38.78  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             ccCCCcEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .++|++||=-|++.  |.+++.+++....+++++--+++..+.+++.-....       + ..+....     +...   
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~v-------i-~~~~~~~-----~~~~---   92 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEV-------L-AREDVMA-----ERIR---   92 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEE-------E-ECC----------------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccccee-------e-ecchhHH-----HHHH---
Confidence            44678899888655  577777887555568999988888888875322111       1 1111000     0000   


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                                ....+.+|+|+-+..-.    .++...+.|++||+++.....
T Consensus        93 ----------~~~~~gvD~vid~vgg~----~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          93 ----------PLDKQRWAAAVDPVGGR----TLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             -----------CCSCCEEEEEECSTTT----THHHHHHTEEEEEEEEECSCC
T ss_pred             ----------HhhccCcCEEEEcCCch----hHHHHHHHhCCCceEEEeecc
Confidence                      11456899988654433    366777899999999885543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.19  E-value=0.15  Score=37.03  Aligned_cols=46  Identities=26%  Similarity=0.284  Sum_probs=35.7

Q ss_pred             hccCCCcEEEEcccccH-HHHHH-HhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           55 LIKGGELFLDYGTGSGI-LGIAA-IKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~-~~~~l-~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      .+++|++|+=+|+|.+. .+..+ +..+..+|+++|.++.-++.+++.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            37789999999998643 34443 446888999999999998888754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.70  E-value=0.28  Score=35.22  Aligned_cols=102  Identities=21%  Similarity=0.236  Sum_probs=61.1

Q ss_pred             CcEEEEcccccHHHH--HHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           60 ELFLDYGTGSGILGI--AAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~--~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      ++|.=+|+|....++  .|++.|. +|+..|.++..++..++.-...... .............     .....      
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~e------   68 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEG-PGLAGTAHPDLLT-----SDIGL------   68 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEES-SSCCEEECCSEEE-----SCHHH------
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhh-hhhhhhhhhhhhh-----hhhHh------
Confidence            567788998854433  4666664 6999999998887765442110000 0011110000000     00000      


Q ss_pred             cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                              .-...|+|++..+-.....+++++..+++++..+++.
T Consensus        69 --------~~~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          69 --------AVKDADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             --------HHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             --------HhcCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence                    1245899998877777888999999999999887764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.31  Score=37.71  Aligned_cols=59  Identities=15%  Similarity=0.074  Sum_probs=41.0

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      +++++|=-|+++|   .++..+++.|. +|+.++.++..++.+.+.+...+.. .++.....|.
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~Dl   70 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYP-GTLIPYRCDL   70 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCS-SEEEEEECCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEEccC
Confidence            6889999998877   33334666776 5999999999999988777766543 2333444443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.60  E-value=0.28  Score=36.01  Aligned_cols=100  Identities=14%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             ccCC--CcEEEEcc--cccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccc
Q 041459           56 IKGG--ELFLDYGT--GSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVD  130 (225)
Q Consensus        56 ~~~~--~~vlDiGc--GtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (225)
                      +++|  ++||=.|+  |.|.+++.+++ .|+..++++..+++......+.   .+.+    .+.....+.+.    +.+.
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad----~vi~~~~~~~~----~~~~   94 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD----AAVNYKTGNVA----EQLR   94 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS----EEEETTSSCHH----HHHH
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce----EEeeccchhHH----HHHH
Confidence            4555  77888773  35888998887 5778888888777665544322   2322    12222221110    1111


Q ss_pred             ccccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEec
Q 041459          131 GIVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      ..             ....+|+|+-...    .+.++...+.|+++|+++..+
T Consensus        95 ~~-------------~~~GvDvv~D~vG----g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          95 EA-------------CPGGVDVYFDNVG----GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             HH-------------CTTCEEEEEESSC----HHHHHHHHTTEEEEEEEEEC-
T ss_pred             HH-------------hccCceEEEecCC----chhHHHHhhhccccccEEEec
Confidence            11             2456999986543    245678889999999998743

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.11  Score=41.55  Aligned_cols=43  Identities=16%  Similarity=0.078  Sum_probs=34.9

Q ss_pred             CCcEEEEcccccHHHHHHHhcCC--CeEEEEeCCHHHHHHHHHHH
Q 041459           59 GELFLDYGTGSGILGIAAIKFGA--AMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~l~~~~~--~~v~~vDi~~~~l~~a~~~~  101 (225)
                      +.+|+|++||.|.++..+...|.  .-+.++|+++.+++..+.|.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~   46 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF   46 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC
Confidence            46799999999998887766665  34789999999988887764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.10  E-value=0.058  Score=41.91  Aligned_cols=38  Identities=13%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             CCCceeEEEeccchh--------------HHHHHHHHHHHhccCCeEEEEec
Q 041459          146 ETEKYDVVIANILLN--------------PLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +++++|+|+++||+.              .+...+.++.+.|||+|.+++.+
T Consensus        20 ~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_          20 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            678999999999963              24667889999999999998853

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=92.00  E-value=0.24  Score=40.70  Aligned_cols=23  Identities=9%  Similarity=-0.009  Sum_probs=17.2

Q ss_pred             HHHHHHHHHhccCCeEEEEeccC
Q 041459          163 LQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       163 ~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                      ..++..=.+-|+|||.+++..++
T Consensus       189 ~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         189 ALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             HHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCcEEEEEEec
Confidence            34677777889999999986443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.82  E-value=0.038  Score=40.75  Aligned_cols=95  Identities=14%  Similarity=0.129  Sum_probs=59.3

Q ss_pred             CCCcEEEEcccc-cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           58 GGELFLDYGTGS-GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      ++.+|+=+|+|. |.-++..+..-..++++.|.++..++..+.....+      +.....+..        .+..     
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~------~~~~~~~~~--------~l~~-----   91 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR------VELLYSNSA--------EIET-----   91 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG------SEEEECCHH--------HHHH-----
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc------ceeehhhhh--------hHHH-----
Confidence            467999999997 66677655533366999999999998877654321      222221110        0111     


Q ss_pred             ccccccCCCCCCceeEEEeccchhH---HHHHHHHHHHhccCCeEEE
Q 041459          137 SSHEIRGISETEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVG  180 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~---~~~~l~~~~~~LkpgG~l~  180 (225)
                               .-...|+||.......   +.-+-+++.+.+|||.+++
T Consensus        92 ---------~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          92 ---------AVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             ---------HHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             ---------hhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence                     1235799988543321   2223467788999998876

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.40  E-value=0.35  Score=40.17  Aligned_cols=50  Identities=12%  Similarity=-0.003  Sum_probs=41.4

Q ss_pred             CCCcEEEEcccccHHHHHHHh-c--CCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 041459           58 GGELFLDYGTGSGILGIAAIK-F--GAAMSVGVDIDPQAIKSAHQNAALNNIG  107 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~l~~-~--~~~~v~~vDi~~~~l~~a~~~~~~~~~~  107 (225)
                      ++..++|+||-.|..+..++. .  ...+|+++|.++...+..++|+..+...
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            567999999999988876554 2  2468999999999999999998877654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.19  E-value=0.083  Score=40.36  Aligned_cols=37  Identities=11%  Similarity=0.104  Sum_probs=30.5

Q ss_pred             CCCceeEEEeccchh-----------------HHHHHHHHHHHhccCCeEEEEe
Q 041459          146 ETEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                      +++++|+|+++||+.                 .+...+.++.+.|+|+|.+++.
T Consensus        20 pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_          20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            678899999999962                 2445788999999999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.16  E-value=0.075  Score=39.61  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCCcEEEEcccc-cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHH
Q 041459           58 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        58 ~~~~vlDiGcGt-G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      ++.+|+=+|+|. |..++..+. +| +++++.|+++..++..+...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG-A~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHHTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhh
Confidence            467999999998 666666554 55 46999999999988887543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.83  E-value=0.29  Score=35.19  Aligned_cols=46  Identities=22%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             hccCCCcEEEEcccccHHH-HH-HHhcCCCeEEEEeCCHHHHHHHHHH
Q 041459           55 LIKGGELFLDYGTGSGILG-IA-AIKFGAAMSVGVDIDPQAIKSAHQN  100 (225)
Q Consensus        55 ~~~~~~~vlDiGcGtG~~~-~~-l~~~~~~~v~~vDi~~~~l~~a~~~  100 (225)
                      .+++|++|+=+|+|.+... .. ++..+..+++++|.+++-++.|++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3778999999999985443 33 4456788899999999988888753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=88.54  E-value=0.21  Score=39.17  Aligned_cols=38  Identities=16%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             CCCceeEEEeccchh-----------------HHHHHHHHHHHhccCCeEEEEec
Q 041459          146 ETEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGISG  183 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~~  183 (225)
                      +++++|+|+.+||+.                 .+...+..+++.|+++|.+++.+
T Consensus        28 ~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~   82 (320)
T d1booa_          28 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF   82 (320)
T ss_dssp             CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence            678999999999962                 14567899999999999999854

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=1.9  Score=33.12  Aligned_cols=108  Identities=16%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             CCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           59 GELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        59 ~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      |++|.=|-.|++.++..    +++.+..+|+.++.+++.++.+.+.+...+..   +.+...|....     +....+++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~---~~~~~~Dvs~~-----~sv~~~~~   73 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS---PRFHQLDIDDL-----QSIRALRD   73 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCC---CEEEECCTTCH-----HHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCc---EEEEEEecCCH-----HHHHHHHH
Confidence            67786665555555544    44445567999999999999988887766533   44444444332     11111111


Q ss_pred             ccccccccCCCCCCceeEEEeccchh-----------H-----------HHHHHHHHHHhccCCeEEEE
Q 041459          135 DLSSHEIRGISETEKYDVVIANILLN-----------P-----------LLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~~~-----------~-----------~~~~l~~~~~~LkpgG~l~~  181 (225)
                      ..       .+..+++|+++.|....           .           ...+.+.+...++++|.++.
T Consensus        74 ~~-------~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn  135 (275)
T d1wmaa1          74 FL-------RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN  135 (275)
T ss_dssp             HH-------HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HH-------HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            00       00246799999974321           1           12346777888899998775

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.95  E-value=1.8  Score=33.02  Aligned_cols=47  Identities=17%  Similarity=0.280  Sum_probs=35.3

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      +|+++|=-|++.|   .++..+++.|+ +|+.+|.+++.++.+.+.+...+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g   53 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG   53 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence            5888888887766   23444666775 59999999999998888776555

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=2.7  Score=29.05  Aligned_cols=99  Identities=9%  Similarity=-0.019  Sum_probs=53.8

Q ss_pred             CcEEEEcccccHHHHHH----HhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccc
Q 041459           60 ELFLDYGTGSGILGIAA----IKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVED  135 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l----~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (225)
                      ..|+=+|+|  .++..+    .+.+ ..++.+|.+++............+     +.+..++....     +.+...   
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~~~~-----~~vi~Gd~~d~-----~~L~~a---   67 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLGDN-----ADVIPGDSNDS-----SVLKKA---   67 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHCTT-----CEEEESCTTSH-----HHHHHH---
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhhcCC-----cEEEEccCcch-----HHHHHh---
Confidence            346666665  444433    3344 559999999876544433333223     34556554332     111111   


Q ss_pred             cccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          136 LSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                                .-+..|.+++...-+.....+....+.+.|...++....
T Consensus        68 ----------~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          68 ----------GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             ----------TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             ----------ccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEc
Confidence                      345678888765554444445555667778877766433

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=87.21  E-value=1.9  Score=34.85  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             CcEEEEcccccHHHHHHHhc--------CCCeEEEEeCCHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSGILGIAAIKF--------GAAMSVGVDIDPQAIKSAHQNA  101 (225)
Q Consensus        60 ~~vlDiGcGtG~~~~~l~~~--------~~~~v~~vDi~~~~l~~a~~~~  101 (225)
                      .+|+|+|+|+|.++..+.+.        -..+++.+|.|+...+.-++++
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence            47999999999998765432        2346899999997655555443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.89  E-value=2.3  Score=32.28  Aligned_cols=84  Identities=13%  Similarity=0.155  Sum_probs=48.8

Q ss_pred             CCCcEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           58 GGELFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        58 ~~~~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      +++.+|=-|++.| ++..    +++.|. +|+.+|.++..++.+.+.+...+.   ++.....|....     +....++
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~---~~~~~~~Dvt~~-----~~v~~~~   78 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY---ESSGYAGDVSKK-----EEISEVI   78 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC---CEEEEECCTTCH-----HHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC---cEEEEEccCCCH-----HHHHHHH
Confidence            5677777776665 4443    444554 699999999999888877765542   234444444322     1122221


Q ss_pred             cccccccccCCCCCCceeEEEeccc
Q 041459          134 EDLSSHEIRGISETEKYDVVIANIL  158 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~  158 (225)
                      +..       ....++.|+++.|..
T Consensus        79 ~~~-------~~~~g~iDilvnnag   96 (251)
T d2c07a1          79 NKI-------LTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHH-------HHHCSCCCEEEECCC
T ss_pred             HHH-------HHhcCCceeeeeccc
Confidence            110       013468999988654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.86  E-value=2.3  Score=28.57  Aligned_cols=92  Identities=13%  Similarity=0.129  Sum_probs=47.6

Q ss_pred             cEEEEcccccHHHHH----HHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccccc
Q 041459           61 LFLDYGTGSGILGIA----AIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDL  136 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~----l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (225)
                      +++=+|+|  .++..    |.+.| ..|+.+|.+++.++.++.    .+     .....+++...     +.+...    
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~----~~-----~~~~~gd~~~~-----~~l~~a----   60 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMG-HEVLAVDINEEKVNAYAS----YA-----THAVIANATEE-----NELLSL----   60 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTT----TC-----SEEEECCTTCT-----THHHHH----
T ss_pred             EEEEECCC--HHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHH----hC-----Ccceeeecccc-----hhhhcc----
Confidence            35555555  44444    33445 459999999988877642    22     22444554332     111111    


Q ss_pred             ccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEe
Q 041459          137 SSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  182 (225)
Q Consensus       137 ~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~  182 (225)
                               .-...|.+++..+-+.-...+..+.+.+.+...++..
T Consensus        61 ---------~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          61 ---------GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             ---------TGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ---------CCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEee
Confidence                     2345787777665443333333334344455566553

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.85  E-value=0.48  Score=36.90  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=42.2

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR  119 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  119 (225)
                      +|+++|=-|++.|   .++..+++.|. +|+.+|.+++.++.+.+.+...+....++.....|..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~   66 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT   66 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCC
Confidence            5788888887776   23344556665 5999999999999988888776655444555555443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.54  E-value=0.49  Score=36.76  Aligned_cols=61  Identities=11%  Similarity=0.097  Sum_probs=42.2

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR  119 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  119 (225)
                      +|+++|=-|++.|   .++..+++.|. +|+.+|.+++.++.+.+.+...+....++.....|..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs   67 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT   67 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTT
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCC
Confidence            5788888787766   33344566675 6999999999999988888766654444555554443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.26  E-value=3.4  Score=27.76  Aligned_cols=93  Identities=15%  Similarity=0.069  Sum_probs=51.4

Q ss_pred             cEEEEcccccHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccc
Q 041459           61 LFLDYGTGSGILGIAAIK---FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLS  137 (225)
Q Consensus        61 ~vlDiGcGtG~~~~~l~~---~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +|+=+|+  |.++..+++   .....|+.+|.+++.++.+...   .+     .....++....     +.+...     
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~-----~~vi~Gd~~~~-----~~l~~~-----   61 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID-----ALVINGDCTKI-----KTLEDA-----   61 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS-----SEEEESCTTSH-----HHHHHT-----
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh-----hhhccCcccch-----hhhhhc-----
Confidence            4555555  555555443   2235699999999988776542   12     23455554332     111111     


Q ss_pred             cccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEE
Q 041459          138 SHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  181 (225)
Q Consensus       138 ~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~  181 (225)
                              .-...|.+++...-+....++....+.+.+..++..
T Consensus        62 --------~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          62 --------GIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             --------TTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             --------ChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEE
Confidence                    345678888755544444445556667777755543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.28  E-value=0.64  Score=35.84  Aligned_cols=60  Identities=8%  Similarity=0.106  Sum_probs=41.3

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  118 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  118 (225)
                      +|+++|=-|++.|   .++..+++.|+ +|+.+|.+++.++.+.+.+...+.....+.....|.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv   66 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV   66 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCT
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccC
Confidence            5777777777766   33344566775 599999999999998888776665434455555444

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.08  E-value=3.9  Score=27.33  Aligned_cols=99  Identities=7%  Similarity=-0.008  Sum_probs=58.4

Q ss_pred             ccccHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccccccccccccCCC
Q 041459           67 TGSGILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVEDLSSHEIRGIS  145 (225)
Q Consensus        67 cGtG~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (225)
                      ||.|.++..+++ .....++.+|.++...+..+.    .+     +.+..++....     +.+...             
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~~-----~~~i~Gd~~~~-----~~L~~a-------------   58 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----SG-----ANFVHGDPTRV-----SDLEKA-------------   58 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----TT-----CEEEESCTTSH-----HHHHHT-------------
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----cC-----ccccccccCCH-----HHHHHh-------------
Confidence            677778887765 334468999999988766542    23     34555554332     111111             


Q ss_pred             CCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccCCCcHHHH
Q 041459          146 ETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHI  192 (225)
Q Consensus       146 ~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  192 (225)
                      .-.+.+.+++...-+.....+....+.+.|...++...........+
T Consensus        59 ~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l  105 (129)
T d2fy8a1          59 NVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQL  105 (129)
T ss_dssp             TCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHH
T ss_pred             hhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHH
Confidence            34567888876655544445556667788887777754444333333

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=84.95  E-value=0.97  Score=32.47  Aligned_cols=100  Identities=11%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             ccCCCcEEEEcccc--cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccccc
Q 041459           56 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIV  133 (225)
Q Consensus        56 ~~~~~~vlDiGcGt--G~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (225)
                      .+++.+||=-|++.  |.+++.+++.-..+++++.-+++-.+.+++.    +.+   ..+...+. ..     +..    
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad---~vi~~~~~-~~-----~~~----   83 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS---EVISREDV-YD-----GTL----   83 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS---EEEEHHHH-CS-----SCC----
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc---ceEeccch-hc-----hhh----
Confidence            33466777666433  5777777774334699999988877777643    322   11111110 00     000    


Q ss_pred             cccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          134 EDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                               .....+.+|+|+-+..-    ..+....+.|+++|+++.....
T Consensus        84 ---------~~~~~~gvd~vid~vgg----~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          84 ---------KALSKQQWQGAVDPVGG----KQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             ---------CSSCCCCEEEEEESCCT----HHHHHHHTTEEEEEEEEECCCS
T ss_pred             ---------hcccCCCceEEEecCcH----HHHHHHHHHhccCceEEEeecc
Confidence                     00145679999865432    3456788899999999885443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=1.4  Score=33.61  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=52.6

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCcccccccccccc
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDGIVE  134 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (225)
                      .|+++|=-|++.|   .++..+++.|. +|+.+|.+++.++...+.+...+   .++.....|....     +.....++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~-----~~v~~~~~   76 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNR-----EDIYSSAK   76 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCH-----HHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCH-----HHHHHHHH
Confidence            5788888888887   44555667775 59999999999998888776554   2344444444332     11222211


Q ss_pred             ccccccccCCCCCCceeEEEeccc
Q 041459          135 DLSSHEIRGISETEKYDVVIANIL  158 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~DvIi~~~~  158 (225)
                      ..       ....+..|+++.|..
T Consensus        77 ~i-------~~~~g~idilinnag   93 (244)
T d1yb1a_          77 KV-------KAEIGDVSILVNNAG   93 (244)
T ss_dssp             HH-------HHHTCCCSEEEECCC
T ss_pred             HH-------HHHcCCCceeEeecc
Confidence            10       013567899888644

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.84  Score=33.58  Aligned_cols=42  Identities=17%  Similarity=0.092  Sum_probs=31.1

Q ss_pred             CcEEEEccccc--HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           60 ELFLDYGTGSG--ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        60 ~~vlDiGcGtG--~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      ++|.=+|+|+=  .++..++..| ..|+..|.+++.++.+++.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATG-HTVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCC-CcEEEEECChHHHHHHHhhHH
Confidence            46788899873  3344455555 459999999999999887765

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.07  E-value=3.5  Score=31.42  Aligned_cols=47  Identities=15%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCC-HHHHHHHHHHHHhcC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDID-PQAIKSAHQNAALNN  105 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~-~~~l~~a~~~~~~~~  105 (225)
                      +|+++|=-|++.|   .++..+++.|+. |+..|.+ ++.++.+.+.+...+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~g   67 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNG   67 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhhC
Confidence            6888888888776   234456666654 8888876 556666666665555

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=82.72  E-value=1.4  Score=31.93  Aligned_cols=109  Identities=8%  Similarity=0.022  Sum_probs=53.7

Q ss_pred             ccCCCcEEEEcccc---cHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCcceEEEecCCCCCccccccccc
Q 041459           56 IKGGELFLDYGTGS---GILGIAAIK-FGAAMSVGVDIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFPASMNERVDG  131 (225)
Q Consensus        56 ~~~~~~vlDiGcGt---G~~~~~l~~-~~~~~v~~vDi~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (225)
                      +++|.+++=+.+|+   |..++.+++ .|. +++++=-++...+...+.++..+.+.    ....+.... .+..+....
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~----vi~~~~~~~-~~~~~~v~~   99 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ----VITEDQNNS-REFGPTIKE   99 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE----EEEHHHHHC-GGGHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE----EEeccccch-hHHHHHHHH
Confidence            56788888874444   455566666 465 46555434434444444444455331    111110000 000000111


Q ss_pred             cccccccccccCCCCCCceeEEEeccchhHHHHHHHHHHHhccCCeEEEEecc
Q 041459          132 IVEDLSSHEIRGISETEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  184 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  184 (225)
                      ....          ....+|+++-...-    ..+....+.|+++|+++..+.
T Consensus       100 ~~~~----------~g~~vdvv~D~vg~----~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         100 WIKQ----------SGGEAKLALNCVGG----KSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HHHH----------HTCCEEEEEESSCH----HHHHHHHHTSCTTCEEEECCC
T ss_pred             HHhh----------ccCCceEEEECCCc----chhhhhhhhhcCCcEEEEECC
Confidence            0000          24568999854322    234567789999999987543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.50  E-value=1.8  Score=31.03  Aligned_cols=46  Identities=13%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             cCCCcEEEEcccccHHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHH
Q 041459           57 KGGELFLDYGTGSGILGI-AAIKFGAAMSVGVDIDPQAIKSAHQNAA  102 (225)
Q Consensus        57 ~~~~~vlDiGcGtG~~~~-~l~~~~~~~v~~vDi~~~~l~~a~~~~~  102 (225)
                      .++++|+=+|||--.-++ +.+..+..+++.+..++.-.+...+.+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~   62 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ   62 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh
Confidence            368899999998644433 3333456789999999876666555543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.41  E-value=8  Score=29.12  Aligned_cols=47  Identities=13%  Similarity=0.055  Sum_probs=35.1

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNN  105 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~  105 (225)
                      +|+++|=-|++.|   .++..+++.|+ +|+.+|.+++.++.+.+.+...+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g   56 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG   56 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC
Confidence            6888888887766   23444566675 59999999999988877776554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.76  E-value=3.3  Score=31.34  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      .|+++|=-|++.|   .++..+++.|+.-++....++..++.+.+.+...+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~   56 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA   56 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC
Confidence            5888887665544   333345566766444567788888888877776663

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=0.44  Score=33.53  Aligned_cols=38  Identities=5%  Similarity=-0.052  Sum_probs=31.3

Q ss_pred             CceeEEEeccchhHHHHHHHHHHHhccCCeEEEEeccC
Q 041459          148 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  185 (225)
Q Consensus       148 ~~~DvIi~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  185 (225)
                      ..+|+|+....-......++.+...+.++..++....+
T Consensus        62 ~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          62 ATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             HTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEECSS
T ss_pred             cccceEEEeecccchHHHHHhhccccCcccEEeeccCc
Confidence            46899999888788888999999999999887775443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=80.65  E-value=3.5  Score=31.35  Aligned_cols=48  Identities=13%  Similarity=0.085  Sum_probs=36.4

Q ss_pred             CCCcEEEEccccc---HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 041459           58 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGVDIDPQAIKSAHQNAALNNI  106 (225)
Q Consensus        58 ~~~~vlDiGcGtG---~~~~~l~~~~~~~v~~vDi~~~~l~~a~~~~~~~~~  106 (225)
                      +|+++|=.|++.|   .++..+++.|. +|+.++.++..++.+.+.+...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~   55 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL   55 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC
Confidence            5888999888766   33444566775 699999999999888887776653