Citrus Sinensis ID: 041460

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MGLSQFLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQKAKYEN
ccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccEEEcccccEEEEEEccccccEEEEEcEEEEEEEEEEEEEccccccEEEEEEEEEccccccccEEEEEEccccccccEEEEEEEEcccccEEEEEEcccccccccEEEEEEEcccEEEEEEccEEEEEEEccccccccccccccEEEEEEEccccccccccEEEEccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEccEccccEEEEccccHHHccEEEEEEEEccEEEEEEccEcEEEEEccHHccccccccccEEEEEccccccHccccccEEcccccccEEEEEEccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHcc
MGLSQFLGFFVFLLLSRVIAAATksdvkfdqnyyitwgndhvlSLNQGRAIQlsmdrssgsgfgsklhygsgffhlkmklpdkdsagIVTAFYLtsqgdkhdeldfeflgnregkpitlqTNVFANgvgnreqrmhlwfdptadfhtykilwnphqivfyvddvpiRVFKNLesigvgypskpmQIEASLwngeswatdggrtkidwthapfkahfqgfdisgcpadddqnrsiqrcyssqywwnseKFWKLHSTQKAKYEN
MGLSQFLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGnregkpitlQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLEsigvgypskPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHStqkakyen
MGLSQFLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQKAKYEN
****QFLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQG********************YGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLH*********
*****FLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQN************WNSEKFWKLHST****YE*
MGLSQFLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKL**********
*GLSQFLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRS********YWWNSEKFWKLHSTQKAKYEN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLSQFLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQKAKYEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
Q9SV60292 Xyloglucan endotransgluco yes no 0.958 0.859 0.607 2e-91
Q9SV61292 Putative xyloglucan endot no no 0.973 0.873 0.586 2e-88
Q9LJR7290 Xyloglucan endotransgluco no no 0.965 0.872 0.555 2e-81
Q41542293 Probable xyloglucan endot N/A no 0.904 0.808 0.506 4e-68
Q6YDN9295 Xyloglucan endotransgluco N/A no 0.916 0.813 0.486 4e-66
Q9XIW1293 Probable xyloglucan endot no no 0.927 0.829 0.484 2e-65
Q39099296 Xyloglucan endotransgluco no no 0.916 0.810 0.480 4e-65
Q41638292 Xyloglucan endotransgluco N/A no 0.977 0.876 0.492 9e-65
Q8LNZ5293 Probable xyloglucan endot N/A no 0.942 0.843 0.478 1e-63
P93349295 Probable xyloglucan endot N/A no 0.969 0.861 0.475 2e-63
>sp|Q9SV60|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1 Back     alignment and function desciption
 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 153/252 (60%), Positives = 192/252 (76%), Gaps = 1/252 (0%)

Query: 11  VFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYG 70
           +FL+ +    A  +  + FD NY +TWG DH+L LNQG+ +QLSMD SSGSGF SK HYG
Sbjct: 14  LFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYG 73

Query: 71  SGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGN 130
           SGFF +++KLP +DSAG+VTAFYLTS+GD HDE+DFEFLGNR+GKPI +QTNVF+NG G 
Sbjct: 74  SGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGG 133

Query: 131 REQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASL 190
           REQ+   WFDPT  FHTY ILWNP+QIVFYVD VPIRVFKN++  GV YPSKPMQ+ ASL
Sbjct: 134 REQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASL 193

Query: 191 WNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFW 250
           WNGE+WAT GG+ KI+W +APFKA +QGF   GC  +   N +   C S++YWWN+  + 
Sbjct: 194 WNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQSNNA-NVCGSTRYWWNTRTYS 252

Query: 251 KLHSTQKAKYEN 262
           +L + ++   EN
Sbjct: 253 QLSANEQKVMEN 264
May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q9SV61|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJR7|XTH3_ARATH Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1 Back     alignment and function description
>sp|Q41542|XTH_WHEAT Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1 Back     alignment and function description
>sp|Q6YDN9|XTH_BRAOB Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1 Back     alignment and function description
>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1 Back     alignment and function description
>sp|Q39099|XTH4_ARATH Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1 Back     alignment and function description
>sp|Q41638|XTHA_PHAAN Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1 Back     alignment and function description
>sp|Q8LNZ5|XTHB_PHAAN Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1 Back     alignment and function description
>sp|P93349|XTH_TOBAC Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
255560117285 Xyloglucan endotransglucosylase/hydrolas 0.969 0.891 0.703 1e-106
224065383272 predicted protein [Populus trichocarpa] 0.927 0.893 0.726 1e-103
147814856 1159 hypothetical protein VITISV_032683 [Viti 0.908 0.205 0.700 1e-101
359480415280 PREDICTED: putative xyloglucan endotrans 0.908 0.85 0.700 1e-100
356524479286 PREDICTED: xyloglucan endotransglucosyla 0.923 0.846 0.663 8e-98
15235587292 xyloglucan endotransglucosylase/hydrolas 0.958 0.859 0.607 1e-89
297790590296 predicted protein [Arabidopsis lyrata su 0.984 0.871 0.598 5e-89
297790584292 hypothetical protein ARALYDRAFT_359039 [ 0.996 0.893 0.584 1e-88
297790598261 predicted protein [Arabidopsis lyrata su 0.874 0.877 0.658 2e-87
5123949295 endoxyloglucan transferase-like protein 0.980 0.871 0.573 8e-87
>gi|255560117|ref|XP_002521076.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] gi|223539645|gb|EEF41227.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 214/256 (83%), Gaps = 2/256 (0%)

Query: 7   LGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSK 66
           + F  FLL+  V++        FDQ Y +TWG DHVL LNQG+ IQLSMD+SSG+GFGSK
Sbjct: 6   VCFLAFLLVGGVLSNRISDTGLFDQTYQVTWGKDHVLPLNQGKEIQLSMDKSSGAGFGSK 65

Query: 67  LHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFAN 126
           L +GSGFFHL+++LP KDSAG+VTA+YLTS GD HDELDFEFLGNREGKPITLQTNVFAN
Sbjct: 66  LSFGSGFFHLRIRLPPKDSAGVVTAYYLTSHGDNHDELDFEFLGNREGKPITLQTNVFAN 125

Query: 127 GVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQI 186
           G+GNREQRM+LWFDP ADFH YKILWN HQIVF+VDD+PIRVFKN  +IGV YPSKPMQI
Sbjct: 126 GLGNREQRMYLWFDPAADFHNYKILWNQHQIVFFVDDIPIRVFKNKTNIGVSYPSKPMQI 185

Query: 187 EASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNS 246
           EASLW+G+SWATDGG+TK +W+HAPF+AHFQGFDISGC   +  N   Q C S +YWWNS
Sbjct: 186 EASLWDGDSWATDGGQTKTNWSHAPFQAHFQGFDISGCSLPETPN--TQPCSSHKYWWNS 243

Query: 247 EKFWKLHSTQKAKYEN 262
           +K+W+L+STQ+  Y++
Sbjct: 244 DKYWQLNSTQRKTYQD 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224065383|ref|XP_002301792.1| predicted protein [Populus trichocarpa] gi|222843518|gb|EEE81065.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147814856|emb|CAN63612.1| hypothetical protein VITISV_032683 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480415|ref|XP_003632454.1| PREDICTED: putative xyloglucan endotransglucosylase/hydrolase protein 1-like [Vitis vinifera] gi|296086841|emb|CBI33008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524479|ref|XP_003530856.1| PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|15235587|ref|NP_193045.1| xyloglucan endotransglucosylase/hydrolase protein 2 [Arabidopsis thaliana] gi|38605517|sp|Q9SV60.1|XTH2_ARATH RecName: Full=Xyloglucan endotransglucosylase/hydrolase protein 2; Short=At-XTH2; Short=XTH-2; Flags: Precursor gi|5123950|emb|CAB45508.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] gi|7268011|emb|CAB78351.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] gi|67633744|gb|AAY78796.1| putative xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] gi|332657829|gb|AEE83229.1| xyloglucan endotransglucosylase/hydrolase protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297790590|ref|XP_002863180.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309014|gb|EFH39439.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297790584|ref|XP_002863177.1| hypothetical protein ARALYDRAFT_359039 [Arabidopsis lyrata subsp. lyrata] gi|297309011|gb|EFH39436.1| hypothetical protein ARALYDRAFT_359039 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297790598|ref|XP_002863184.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309018|gb|EFH39443.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|5123949|emb|CAB45507.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] gi|7268010|emb|CAB78350.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
TAIR|locus:2123201292 XTH2 "xyloglucan endotransgluc 0.958 0.859 0.607 2.3e-87
TAIR|locus:2123281292 XTH1 "xyloglucan endotransgluc 0.969 0.869 0.591 4.4e-84
TAIR|locus:2086959290 XTH3 "xyloglucan endotransgluc 0.889 0.803 0.588 3.3e-79
TAIR|locus:2159118293 XTH5 "xyloglucan endotransgluc 0.961 0.860 0.494 7.6e-64
TAIR|locus:2065821296 XTH4 "xyloglucan endotransgluc 0.927 0.820 0.482 6.9e-63
TAIR|locus:2137609293 XTH7 "xyloglucan endotransgluc 0.973 0.870 0.477 2.4e-60
TAIR|locus:2169990292 XTH6 "xyloglucan endotransgluc 0.935 0.839 0.454 2.7e-59
TAIR|locus:2174597284 XTH25 "xyloglucan endotransglu 0.900 0.830 0.481 4.5e-59
TAIR|locus:2823919305 XTH8 "xyloglucan endotransgluc 0.950 0.816 0.454 1.9e-58
TAIR|locus:2095168291 XTH16 "xyloglucan endotransglu 0.847 0.762 0.493 3.2e-58
TAIR|locus:2123201 XTH2 "xyloglucan endotransglucosylase/hydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 153/252 (60%), Positives = 192/252 (76%)

Query:    11 VFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYG 70
             +FL+ +    A  +  + FD NY +TWG DH+L LNQG+ +QLSMD SSGSGF SK HYG
Sbjct:    14 LFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYG 73

Query:    71 SGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGN 130
             SGFF +++KLP +DSAG+VTAFYLTS+GD HDE+DFEFLGNR+GKPI +QTNVF+NG G 
Sbjct:    74 SGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGG 133

Query:   131 REQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSKPMQIEASL 190
             REQ+   WFDPT  FHTY ILWNP+QIVFYVD VPIRVFKN++  GV YPSKPMQ+ ASL
Sbjct:   134 REQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASL 193

Query:   191 WNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFW 250
             WNGE+WAT GG+ KI+W +APFKA +QGF   GC  +   N +   C S++YWWN+  + 
Sbjct:   194 WNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQSNNA-NVCGSTRYWWNTRTYS 252

Query:   251 KLHSTQKAKYEN 262
             +L + ++   EN
Sbjct:   253 QLSANEQKVMEN 264
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
TAIR|locus:2123281 XTH1 "xyloglucan endotransglucosylase/hydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086959 XTH3 "xyloglucan endotransglucosylase/hydrolase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159118 XTH5 "xyloglucan endotransglucosylase/hydrolase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065821 XTH4 "xyloglucan endotransglucosylase/hydrolase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137609 XTH7 "xyloglucan endotransglucosylase/hydrolase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169990 XTH6 "xyloglucan endotransglucosylase/hydrolase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174597 XTH25 "xyloglucan endotransglucosylase/hydrolase 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2823919 XTH8 "xyloglucan endotransglucosylase/hydrolase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095168 XTH16 "xyloglucan endotransglucosylase/hydrolase 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SV60XTH2_ARATH2, ., 4, ., 1, ., 2, 0, 70.60710.95800.8595yesno
Q41542XTH_WHEAT2, ., 4, ., 1, ., 2, 0, 70.50610.90450.8088N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.207LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-142
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 4e-81
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 1e-77
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 3e-27
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 4e-24
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 2e-21
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 6e-16
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 4e-06
cd02178258 cd02178, GH16_beta_agarase, Beta-agarase, member o 4e-04
cd02179321 cd02179, GH16_beta_GRP, beta-1,3-glucan recognitio 0.004
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  399 bits (1028), Expect = e-142
 Identities = 142/240 (59%), Positives = 178/240 (74%), Gaps = 4/240 (1%)

Query: 25  SDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKD 84
               FD+N+++TWG DH+   N G ++QL++D+SSGSGF SK  Y  GFF +++KLP  D
Sbjct: 2   VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGD 61

Query: 85  SAGIVTAFYLTSQG-DKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTA 143
           SAG VTAFYL+SQG D HDE+DFEFLGN  G+P TLQTNVFANGVG REQR++LWFDPTA
Sbjct: 62  SAGTVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTA 121

Query: 144 DFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPS-KPMQIEASLWNGESWATDGGR 202
           DFHTY ILWNPHQIVFYVDDVPIRVFKN E++GV YPS +PM + AS+W+G  WAT GGR
Sbjct: 122 DFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGR 181

Query: 203 TKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQKAKYEN 262
            KIDW++APF A ++ F + GC  D   + S   C  ++ WWN   + +L + Q+   E 
Sbjct: 182 VKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSC--TEDWWNGSTYQQLSANQQRAMEW 239

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185687 cd02178, GH16_beta_agarase, Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185688 cd02179, GH16_beta_GRP, beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 100.0
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.97
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.97
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.96
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.95
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.74
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.5
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 95.0
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 94.14
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 90.52
smart00560133 LamGL LamG-like jellyroll fold domain. 89.84
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 88.43
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 88.33
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 82.66
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 82.45
PF14099224 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 81.3
cd00152201 PTX Pentraxins are plasma proteins characterized b 80.91
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-65  Score=461.65  Aligned_cols=255  Identities=44%  Similarity=0.846  Sum_probs=224.7

Q ss_pred             hHHHHHHHHHHHhhhhcccCCcccccCceeeEeCCCeEEeCCCceEEEEeeCCCcceEEEceeeEeEEEEEEEEecCCCC
Q 041460            6 FLGFFVFLLLSRVIAAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDS   85 (262)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~nv~~~~~G~~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g~~   85 (262)
                      +|+||++||+..+..--.-+..+|.++|..+|+.+|+.+.++|+.|+|+|++.+|++|+||+.|+||+||+|||+|+|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~s   83 (291)
T PLN03161          4 LKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNS   83 (291)
T ss_pred             HHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCC
Confidence            45555555444332111112567999999999999999987888899999999999999999999999999999999877


Q ss_pred             CceEEEEEEeecCCCCCceEEEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCee
Q 041460           86 AGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVP  165 (262)
Q Consensus        86 ~G~~~Afwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~  165 (262)
                      +|+||||||++.++.++|||||++|+++++|+++|+|+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||++
T Consensus        84 aG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~  163 (291)
T PLN03161         84 AGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTP  163 (291)
T ss_pred             CCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEE
Confidence            99999999998766799999999999888899999999999988899889999999999999999999999999999999


Q ss_pred             EEEEEecccCCCCCCC-CCcEEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEeeccCCCCCCccccccCC--Ccc
Q 041460          166 IRVFKNLESIGVGYPS-KPMQIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYS--SQY  242 (262)
Q Consensus       166 vr~~~~~~~~~~~~P~-~Pm~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~~c~~~~~~~~~~~~c~~--~~~  242 (262)
                      ||++++.+..+.+||+ +||+|++|||.|++||++||+++|||+++||+|.+++|++.+|.+++  +.+...|.+  +..
T Consensus       164 iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~--~~~~~~c~~~~~~~  241 (291)
T PLN03161        164 IRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNG--PVSIKQCADPTPSN  241 (291)
T ss_pred             EEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCC--CCCccccCCCCccc
Confidence            9999877666778998 79999999999999999999999999999999999999999999873  212357975  467


Q ss_pred             cccccccccCCHHHHHHhcC
Q 041460          243 WWNSEKFWKLHSTQKAKYEN  262 (262)
Q Consensus       243 ~~~~~~~~~l~~~~~~~~~~  262 (262)
                      ||+++.+++|+.+|+++|+|
T Consensus       242 ~~~~~~~~~l~~~~~~~~~~  261 (291)
T PLN03161        242 WWTSPSYSQLTNAQLTQMKK  261 (291)
T ss_pred             cccCccccCCCHHHHHHHHH
Confidence            99999999999999999987

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 1e-65
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 6e-47
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 7e-47
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 4e-45
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 5e-45
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 6e-16
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 2e-15
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 2e-15
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 4e-15
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 8e-15
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 8e-15
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 1e-14
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 8e-14
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 2e-13
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 1e-12
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 3e-12
3axd_A249 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 1e-05
1ajo_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 2e-05
2r49_A241 Mutational And Structural Studies Of E85i Reveal Th 8e-05
3h0o_A240 The Importance Of Ch-Pi Stacking Interactions Betwe 9e-05
3hr9_A241 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 2e-04
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/232 (52%), Positives = 156/232 (67%), Gaps = 4/232 (1%)
Query: 26  DVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDS 85
           DV F +NY  TW  DH+   N G  IQL +D+ +G+GF SK  Y  G F ++MKL   DS
Sbjct: 14  DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDS 73
Query: 86  AGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADF 145
           AG VTAFYL+SQ  +HDE+DFEFLGNR G+P  LQTNVF  G G+REQR++LWFDPT +F
Sbjct: 74  AGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEF 133
Query: 146 HTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYP-SKPMQIEASLWNGESWATDGGRTK 204
           H Y +LWN + IVF VDDVPIRVFKN + +GV +P ++PM+I +SLWN + WAT GG  K
Sbjct: 134 HYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEK 193
Query: 205 IDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQ 256
            DW+ APF A ++ F I GC A  +      +      WW+ ++F  L + Q
Sbjct: 194 TDWSKAPFIASYRSFHIDGCEASVEAKFCATQ---GARWWDQKEFQDLDAFQ 242
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form Length = 249 Back     alignment and structure
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-127 Length = 214 Back     alignment and structure
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The Flexible Loops Of Fibrobacter Succinogenes 1,3-1,4-beta-d- Glucanaseglucanase Length = 241 Back     alignment and structure
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between Carbohydrate And Aromatic Residues In Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase Length = 240 Back     alignment and structure
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D- Glucanase F40i Mutant Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 6e-88
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 2e-76
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 7e-63
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 1e-60
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 1e-60
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 3e-57
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 1e-54
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 6e-54
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 9e-38
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 6e-25
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 8e-13
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 4e-09
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 1e-07
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 2e-06
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 2e-06
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 2e-06
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 2e-06
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 3e-06
3rq0_A269 Glycosyl hydrolases family protein 16; structural 6e-06
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 9e-06
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 1e-05
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 3e-05
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 9e-05
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 3e-04
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 5e-04
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 7e-04
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  261 bits (669), Expect = 6e-88
 Identities = 122/244 (50%), Positives = 155/244 (63%), Gaps = 4/244 (1%)

Query: 20  AAATKSDVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMK 79
           A     DV F +NY  TW  DH+   N G  IQL +D+ +G+GF SK  Y  G F ++MK
Sbjct: 8   ALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMK 67

Query: 80  LPDKDSAGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWF 139
           L   DSAG VTAFYL+SQ  +HDE+DFEFLGNR G+P  LQTNVF  G G+REQR++LWF
Sbjct: 68  LVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWF 127

Query: 140 DPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPSK-PMQIEASLWNGESWAT 198
           DPT +FH Y +LWN + IVF VDDVPIRVFKN + +GV +P   PM+I +SLWN + WAT
Sbjct: 128 DPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWAT 187

Query: 199 DGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQKA 258
            GG  K DW+ APF A ++ F I GC A  +             WW+ ++F  L + Q  
Sbjct: 188 RGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFC---ATQGARWWDQKEFQDLDAFQYR 244

Query: 259 KYEN 262
           +   
Sbjct: 245 RLSW 248
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Length = 308 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Length = 280 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Length = 346 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 100.0
1ups_A 420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 100.0
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 100.0
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 100.0
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.97
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.96
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.95
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.85
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.8
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 97.49
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 90.9
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 88.82
4dqa_A355 Uncharacterized protein; two domains structure, DU 87.68
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=3.5e-61  Score=435.09  Aligned_cols=233  Identities=52%  Similarity=0.969  Sum_probs=215.0

Q ss_pred             CcccccCceeeEeCCCeEEeCCCceEEEEeeCCCcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeecCCCCCceE
Q 041460           26 DVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELD  105 (262)
Q Consensus        26 ~~~~~~~~~~~w~~~nv~~~~~G~~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~~~~~EID  105 (262)
                      +.+|.++|+++|+++||++.++|+.|+|++++.+||+|.||++|+|||||||||+|+|+++|+||||||++++|.++|||
T Consensus        14 ~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~p~~gEID   93 (278)
T 1umz_A           14 DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEID   93 (278)
T ss_dssp             CCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEEE
T ss_pred             CCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCCCCCCeEE
Confidence            67899999999999999998888889999999999999999999999999999999987789999999999888899999


Q ss_pred             EEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCC-CCCc
Q 041460          106 FEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYP-SKPM  184 (262)
Q Consensus       106 iE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P-~~Pm  184 (262)
                      ||++|+++++++++|+|+|.++.+++++.+.+++|++++||+|+|+|+|++|+|||||++++++++.+..+.+|| ++||
T Consensus        94 mE~lG~~~g~~~tvhtn~~~~g~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~~Pf~~P~  173 (278)
T 1umz_A           94 FEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPM  173 (278)
T ss_dssp             EEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCB
T ss_pred             EEEeCCCCCCceEEEEEEecCCCCCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCccCcCCCce
Confidence            999999888889999999999888888888888999999999999999999999999999999987765567899 5999


Q ss_pred             EEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEeeccCCCCCCccccccCC-CcccccccccccCCHHHHHHhcC
Q 041460          185 QIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYS-SQYWWNSEKFWKLHSTQKAKYEN  262 (262)
Q Consensus       185 ~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~~c~~~~~~~~~~~~c~~-~~~~~~~~~~~~l~~~~~~~~~~  262 (262)
                      +|+||||+||+|++.||++++||++.||+++|+.+++.+|..+  .+  ...|.+ +..||+++.+++|+++|+++|+|
T Consensus       174 ~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~--~~--~~~c~~~~~~~~~~~~~~~l~~~~~~~~~~  248 (278)
T 1umz_A          174 KIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEAS--VE--AKFCATQGARWWDQKEFQDLDAFQYRRLSW  248 (278)
T ss_dssp             EEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECC--SS--SCCCTTTTCSGGGSGGGSSCCHHHHHHHHH
T ss_pred             EEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCC--CC--CCccCCCcccccccCccccCCHHHHHHHHH
Confidence            9999999999999999988899999999999999999999985  22  345974 46799999999999999999987
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 3e-83
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 6e-37
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 2e-20
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 7e-18
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 9e-10
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 1e-06
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 1e-05
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  248 bits (633), Expect = 3e-83
 Identities = 120/238 (50%), Positives = 154/238 (64%), Gaps = 4/238 (1%)

Query: 26  DVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDS 85
           DV F +NY  TW  DH+   N G  IQL +D+ +G+GF SK  Y  G F ++MKL   DS
Sbjct: 3   DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDS 62

Query: 86  AGIVTAFYLTSQGDKHDELDFEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADF 145
           AG VTAFYL+SQ  +HDE+DFEFLGNR G+P  LQTNVF  G G+REQR++LWFDPT +F
Sbjct: 63  AGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEF 122

Query: 146 HTYKILWNPHQIVFYVDDVPIRVFKNLESIGV-GYPSKPMQIEASLWNGESWATDGGRTK 204
           H Y +LWN + IVF VDDVPIRVFKN + +GV    ++PM+I +SLWN + WAT GG  K
Sbjct: 123 HYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEK 182

Query: 205 IDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCYSSQYWWNSEKFWKLHSTQKAKYEN 262
            DW+ APF A ++ F I GC A  +             WW+ ++F  L + Q  +   
Sbjct: 183 TDWSKAPFIASYRSFHIDGCEASVEAKFC---ATQGARWWDQKEFQDLDAFQYRRLSW 237
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.98
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.97
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.97
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.97
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 92.6
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 92.46
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 92.22
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 92.08
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 91.09
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 90.66
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 86.41
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 85.14
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 84.7
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 84.55
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 84.32
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=4.3e-61  Score=430.24  Aligned_cols=233  Identities=52%  Similarity=0.960  Sum_probs=216.6

Q ss_pred             CcccccCceeeEeCCCeEEeCCCceEEEEeeCCCcceEEEceeeEeEEEEEEEEecCCCCCceEEEEEEeecCCCCCceE
Q 041460           26 DVKFDQNYYITWGNDHVLSLNQGRAIQLSMDRSSGSGFGSKLHYGSGFFHLKMKLPDKDSAGIVTAFYLTSQGDKHDELD  105 (262)
Q Consensus        26 ~~~~~~~~~~~w~~~nv~~~~~G~~L~Ltl~~~sga~i~S~~~f~YG~~EaR~K~p~g~~~G~~~Afwl~~~~~~~~EID  105 (262)
                      +.+|.++|.++|+++||++.++|..|+|++++.+||+|+||++|+|||||||||+|+|++.|++++||+.+.++.++|||
T Consensus         3 ~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~~~~~dEID   82 (267)
T d1umza_           3 DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEID   82 (267)
T ss_dssp             CCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEEE
T ss_pred             cccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCCCCCCCeEE
Confidence            56899999999999999999999999999999999999999999999999999999987779999999988878899999


Q ss_pred             EEEcCCCCCCCcEEEeeEeeCCcCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeeEEEEEecccCCCCCCC-CCc
Q 041460          106 FEFLGNREGKPITLQTNVFANGVGNREQRMHLWFDPTADFHTYKILWNPHQIVFYVDDVPIRVFKNLESIGVGYPS-KPM  184 (262)
Q Consensus       106 iE~lG~~~g~p~~~~tn~~~~g~~~~~~~~~l~~d~~~~fHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~~~~~P~-~Pm  184 (262)
                      ||++|+..++++++|+|+|.++.+++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.++|. +||
T Consensus        83 iE~lG~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~~pm  162 (267)
T d1umza_          83 FEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPM  162 (267)
T ss_dssp             EEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCB
T ss_pred             EEEecccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcceEE
Confidence            9999999888999999999999999999999999999999999999999999999999999999988777788886 999


Q ss_pred             EEEEEeecCCCCCCCCCcccccCCCCceEEEEeEEEEeeccCCCCCCccccccC-CCcccccccccccCCHHHHHHhcC
Q 041460          185 QIEASLWNGESWATDGGRTKIDWTHAPFKAHFQGFDISGCPADDDQNRSIQRCY-SSQYWWNSEKFWKLHSTQKAKYEN  262 (262)
Q Consensus       185 ~l~lnlw~gg~Wa~~GG~~~~d~~~~P~~~~~~~~~v~~c~~~~~~~~~~~~c~-~~~~~~~~~~~~~l~~~~~~~~~~  262 (262)
                      +|++|||+||+|+++||++++||+.+||+|+|++|+|.+|..++  .  ...|. .+..||+++.++.|+.+|+++|+|
T Consensus       163 ~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~--~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (267)
T d1umza_         163 KIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASV--E--AKFCATQGARWWDQKEFQDLDAFQYRRLSW  237 (267)
T ss_dssp             EEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCS--S--SCCCTTTTCSGGGSGGGSSCCHHHHHHHHH
T ss_pred             EEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCC--C--CcccCCCCCccccccccccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999873  2  23444 556899999999999999999987
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure