Citrus Sinensis ID: 041463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENGG
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccHHHHHccccccEEEccccccEEccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEEccHHccccccccEEEcccccccccccccHHHHccccccEEEccccccccccccccccccccccccccccEEEEEEEEEEccccEEEccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEcccccccccccHHHHccccccccccccccccEEccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHccccccEEEEcccccccccccccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHcccccccEEEcccccccccccHHHHHccHHcccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHcccccccHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
NQTELRTLVLNKArisdtipdwfWQLSLTLDELDVAYNElrgrvpnslgfnfpatvdlssnnfegrlplcipksigNLKQLITLVISnnnlsgeipllfsnsSFLYILDMsnnslsgsipesigsLRTLRFLVLRNNylsgelplslknctfmesldlgdnnlsgnipawigasmpgLLHILDLshndlsgfipprvgnlsdmkveppksvqhegrlrvvtkgserkYFTTLYLVNLLdlsstnlsaeipaELTSLVHLgtlnlshnhlvgkipeeignfewlETLDlsknklsgsippsmASLIFMNHLNLSynnlsgeipntnqfqtlndpsiyegnlalcgdplpkkcpengg
Flexible Loop (DISEMBL)
NQTELRTLVLnkarisdtipdwFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMkveppksvqhegrlrvvtkgserkyFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLAlcgdplpkkcpengg
Low Complexity Region (SEG)
NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENGG
Disordered region (IsUnstruct)
******TLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV*******************LRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCG************
Disordered Region (DISOPRED)
NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPL**K******
Disordered Region (DISEMBL)
NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENGG
Disordered Region (DISPRO)
*QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.924	0.276	0.370	2e-42
Q9FL28	1173	LRR receptor-like serine/	no	no	0.943	0.286	0.352	8e-41
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.960	0.283	0.331	3e-38
C0LGV1	1135	LRR receptor-like serine/	no	no	0.845	0.265	0.357	7e-38
Q9LHP4	1141	Receptor-like protein kin	no	no	0.859	0.268	0.365	8e-38
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.963	0.286	0.346	1e-37
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.960	0.283	0.329	2e-37
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.921	0.297	0.343	3e-37
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.789	0.286	0.349	4e-37
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.963	0.300	0.326	4e-37

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 196/378 (51%), Gaps = 49/378 (12%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLS 59
           N   L+ LVL+  +++  IP    +L+ +L  L++  N  +G++P  LG      T+DL 
Sbjct: 470 NAASLKRLVLSDNQLTGEIPREIGKLT-SLSVLNLNANMFQGKIPVELGDCTSLTTLDLG 528

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP---------LLFSNSSFLY---I 107
           SNN +G+    IP  I  L QL  LV+S NNLSG IP         +   + SFL    I
Sbjct: 529 SNNLQGQ----IPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGI 584

Query: 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI 167
            D+S N LSG IPE +G    L  + L NN+LSGE+P SL   T +  LDL  N L+G+I
Sbjct: 585 FDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSI 644

Query: 168 PAWIGASMPGLLHILDLSHNDLSGFIPPRVG--------NLSDMKVEPPKSVQHEGRLRV 219
           P  +G S+   L  L+L++N L+G IP   G        NL+  K++ P      G L+ 
Sbjct: 645 PKEMGNSLK--LQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASL-GNLKE 701

Query: 220 VTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN 279
           +T                +DLS  NLS E+ +EL+++  L  L +  N   G+IP E+GN
Sbjct: 702 LTH---------------MDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGN 746

Query: 280 FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS--IYE 337
              LE LD+S+N LSG IP  +  L  +  LNL+ NNL GE+P+    Q   DPS  +  
Sbjct: 747 LTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQ---DPSKALLS 803

Query: 338 GNLALCGDPLPKKCPENG 355
           GN  LCG  +   C   G
Sbjct: 804 GNKELCGRVVGSDCKIEG 821

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  167 bits (424), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 180/352 (51%), Gaps = 16/352 (4%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLS 59
           N + L TL +    ++ T+     +L   L  L V+YN L G +P  +G       + L 
Sbjct: 453 NCSNLETLSVADNNLTGTLKPLIGKLQ-KLRILQVSYNSLTGPIPREIGNLKDLNILYLH 511

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
           SN F GR    IP+ + NL  L  L + +N+L G IP    +   L +LD+SNN  SG I
Sbjct: 512 SNGFTGR----IPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQI 567

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
           P     L +L +L L+ N  +G +P SLK+ + + + D+ DN L+G IP  + AS+  + 
Sbjct: 568 PALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ 627

Query: 180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD 239
             L+ S+N L+G IP  +G L        + VQ       +  GS  +       V  LD
Sbjct: 628 LYLNFSNNLLTGTIPKELGKL--------EMVQEIDLSNNLFSGSIPRSLQACKNVFTLD 679

Query: 240 LSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
            S  NLS  IP E+   +  + +LNLS N   G+IP+  GN   L +LDLS N L+G IP
Sbjct: 680 FSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIP 739

Query: 299 PSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKK 350
            S+A+L  + HL L+ NNL G +P +  F+ +N   +  GN  LCG   P K
Sbjct: 740 ESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLM-GNTDLCGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 201/410 (49%), Gaps = 68/410 (16%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG---FNFPATVDLS 59
           + ++T+VL+  +    +PD F  L L L+ LD++ N L G +P+ +     N    + L 
Sbjct: 377 SNIKTMVLSFNKFVGGLPDSFSNL-LKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQ 435

Query: 60  SNNFEGRLPL----C----------------IPKSIGNLKQLITLVISNNNLSGEIP--L 97
           +N F+G +P     C                IP S+G+L +L  L++  N LSGEIP  L
Sbjct: 436 NNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQEL 495

Query: 98  LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLD 157
           ++  +    ILD   N L+G IP S+ +   L ++ L NN LSGE+P SL   + +  L 
Sbjct: 496 MYLQALENLILDF--NDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILK 553

Query: 158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPP----RVGNLSDMKVEPPK---- 209
           LG+N++SGNIPA +G      L  LDL+ N L+G IPP    + GN++   +   +    
Sbjct: 554 LGNNSISGNIPAELGNCQS--LIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYI 611

Query: 210 ----------------------------SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241
                                       S +H      V +G  +  F     +  LDLS
Sbjct: 612 KNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLS 671

Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
              L   IP EL ++ +L  LNL HN L G IP+++G  + +  LDLS N+ +G+IP S+
Sbjct: 672 YNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSL 731

Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKC 351
            SL  +  ++LS NNLSG IP +  F T   P     N +LCG PLP  C
Sbjct: 732 TSLTLLGEIDLSNNNLSGMIPESAPFDTF--PDYRFANNSLCGYPLPIPC 779

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/333 (35%), Positives = 175/333 (52%), Gaps = 32/333 (9%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA-TVDLS 59
           N +EL  L L    +S T+P    +L   L+++ +  N L G +P  +GF      +DLS
Sbjct: 273 NCSELINLFLYDNDLSGTLPKELGKLQ-NLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLS 331

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
            N F G     IPKS GNL  L  L++S+NN++G IP + SN + L    +  N +SG I
Sbjct: 332 MNYFSGT----IPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLI 387

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
           P  IG L+ L   +   N L G +P  L  C  +++LDL  N L+G++PA       GL 
Sbjct: 388 PPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPA-------GLF 440

Query: 180 HILDLSH-----NDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV---TKGSERKYFTT 231
            + +L+      N +SG IP  +GN + +            RLR+V     G   K    
Sbjct: 441 QLRNLTKLLLISNAISGVIPLEIGNCTSLV-----------RLRLVNNRITGEIPKGIGF 489

Query: 232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN 291
           L  ++ LDLS  NLS  +P E+++   L  LNLS+N L G +P  + +   L+ LD+S N
Sbjct: 490 LQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSN 549

Query: 292 KLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
            L+G IP S+  LI +N L LS N+ +GEIP++
Sbjct: 550 DLTGKIPDSLGHLISLNRLILSKNSFNGEIPSS 582

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 168/328 (51%), Gaps = 22/328 (6%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLS 59
           N +EL  L L +  +S +IP    QL+  L++L +  N L G +P  +G  +    +DLS
Sbjct: 272 NCSELVDLFLYENSLSGSIPREIGQLT-KLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLS 330

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
            N   G     IP SIG L  L   +IS+N  SG IP   SN S L  L +  N +SG I
Sbjct: 331 LNLLSGS----IPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLI 386

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
           P  +G+L  L      +N L G +P  L +CT +++LDL  N+L+G IP+  G  M   L
Sbjct: 387 PSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPS--GLFMLRNL 444

Query: 180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV---VTKGSERKYFTTLYLVN 236
             L L  N LSGFIP  +GN S +            RLR+      G       +L  +N
Sbjct: 445 TKLLLISNSLSGFIPQEIGNCSSLV-----------RLRLGFNRITGEIPSGIGSLKKIN 493

Query: 237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
            LD SS  L  ++P E+ S   L  ++LS+N L G +P  + +   L+ LD+S N+ SG 
Sbjct: 494 FLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGK 553

Query: 297 IPPSMASLIFMNHLNLSYNNLSGEIPNT 324
           IP S+  L+ +N L LS N  SG IP +
Sbjct: 554 IPASLGRLVSLNKLILSKNLFSGSIPTS 581

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 183/372 (49%), Gaps = 29/372 (7%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSS 60
           +  L+ L L     +  IP      S  L  L +++N L G +P+SLG  +    + L  
Sbjct: 415 KNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 473

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N  EG     IP+ +  +K L TL++  N+L+GEIP   SN + L  + +SNN L+G IP
Sbjct: 474 NMLEGE----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 529

Query: 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW-------IGA 173
           + IG L  L  L L NN  SG +P  L +C  +  LDL  N  +G IPA        I A
Sbjct: 530 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 589

Query: 174 S-MPGLLHIL---DLSHNDLSG------FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKG 223
           + + G  ++    D    +  G      F   R   L+ +    P ++        V  G
Sbjct: 590 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-----VYGG 644

Query: 224 SERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWL 283
                F     +  LD+S   LS  IP E+ S+ +L  LNL HN + G IP+E+G+   L
Sbjct: 645 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 704

Query: 284 ETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALC 343
             LDLS NKL G IP +M++L  +  ++LS NNLSG IP   QF+T   P+ +  N  LC
Sbjct: 705 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLC 763

Query: 344 GDPLPKKCPENG 355
           G PLP+  P N 
Sbjct: 764 GYPLPRCDPSNA 775

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/410 (32%), Positives = 200/410 (48%), Gaps = 68/410 (16%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG---FNFPATVDLS 59
           + ++T+VL+  +    +PD F  L   L+ LD++ N L G +P+ +     N    + L 
Sbjct: 377 SNIKTMVLSFNKFVGGLPDSFSNLP-KLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQ 435

Query: 60  SNNFEGRLPL----C----------------IPKSIGNLKQLITLVISNNNLSGEIP--L 97
           +N F+G +P     C                IP S+G+L +L  L++  N LSGEIP  L
Sbjct: 436 NNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQEL 495

Query: 98  LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLD 157
           ++  +    ILD   N L+G IP S+ +   L ++ L NN LSGE+P SL   + +  L 
Sbjct: 496 MYLQALENLILDF--NDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILK 553

Query: 158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPP----RVGNLSDMKVEPPK---- 209
           LG+N++SGNIPA +G      L  LDL+ N L+G IPP    + GN++   +   +    
Sbjct: 554 LGNNSISGNIPAELGNCQS--LIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYI 611

Query: 210 ----------------------------SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241
                                       S +H      V +G  +  F     +  LDLS
Sbjct: 612 KNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLS 671

Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
              L   IP EL ++ +L  LNL HN L G IP+++G  + +  LDLS N+ +G+IP S+
Sbjct: 672 YNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSL 731

Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKC 351
            SL  +  ++LS NNLSG IP +  F T   P     N +LCG PLP  C
Sbjct: 732 TSLTLLGEIDLSNNNLSGMIPESAPFDTF--PDYRFANNSLCGYPLPLPC 779

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 188/364 (51%), Gaps = 36/364 (9%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGF--NFPATVDLSS 60
           T L  L L+  R++ TIP     L   +D L +  N+L G++P  +GF  NF + +D+S+
Sbjct: 355 TLLEKLDLSINRLNGTIPQELQFLPYLVD-LQLFDNQLEGKIPPLIGFYSNF-SVLDMSA 412

Query: 61  NNFEGRLP--LC------------------IPKSIGNLKQLITLVISNNNLSGEIPLLFS 100
           N+  G +P   C                  IP+ +   K L  L++ +N L+G +P+   
Sbjct: 413 NSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELF 472

Query: 101 NSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160
           N   L  L++  N LSG+I   +G L+ L  L L NN  +GE+P  + N T +   ++  
Sbjct: 473 NLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISS 532

Query: 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV 220
           N L+G+IP  +G+ +   +  LDLS N  SG+I   +G L  +++        + RL   
Sbjct: 533 NQLTGHIPKELGSCVT--IQRLDLSGNKFSGYIAQELGQLVYLEILRLS----DNRL--- 583

Query: 221 TKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLG-TLNLSHNHLVGKIPEEIGN 279
             G     F  L  +  L L    LS  IP EL  L  L  +LN+SHN+L G IP+ +GN
Sbjct: 584 -TGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGN 642

Query: 280 FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN 339
            + LE L L+ NKLSG IP S+ +L+ +   N+S NNL G +P+T  FQ + D S + GN
Sbjct: 643 LQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRM-DSSNFAGN 701

Query: 340 LALC 343
             LC
Sbjct: 702 HGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 169/338 (50%), Gaps = 57/338 (16%)

Query: 30  LDELDVAYNELRGRVPNS---LGFNFPATVDLSSNNFEGRLP------------------ 68
           L EL++A N L G + +S   L  N    + L  N   G +P                  
Sbjct: 274 LQELELAGNSLGGEITSSVRHLSVNL-VQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNL 332

Query: 69  --LCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL 126
               IP+ +  L +L  + +SNN+L+GEIP+   +   L +LD+S N+LSGSIP+S G+L
Sbjct: 333 LSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNL 392

Query: 127 RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSH 186
             LR L+L  N+LSG +P SL  C  +E LDL  NNL+G IP  + +++  L   L+LS 
Sbjct: 393 SQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSS 452

Query: 187 NDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLS 246
           N LSG IP  +  + DM +                                +DLSS  LS
Sbjct: 453 NHLSGPIPLELSKM-DMVLS-------------------------------VDLSSNELS 480

Query: 247 AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306
            +IP +L S + L  LNLS N     +P  +G   +L+ LD+S N+L+G+IPPS      
Sbjct: 481 GKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSST 540

Query: 307 MNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCG 344
           + HLN S+N LSG + +   F  L   S + G+  LCG
Sbjct: 541 LKHLNFSFNLLSGNVSDKGSFSKLTIES-FLGDSLLCG 577

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 177/377 (46%), Gaps = 34/377 (9%)

Query: 5   LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNF 63
           LR    +  R S  IP      + +L+EL +  N + G +P ++   +   T+DLS N  
Sbjct: 352 LRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYL 411

Query: 64  EGRLP--------------------LCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS 103
            G +P                      IP  IG L+ L  L+++NN L+GEIP  F N S
Sbjct: 412 NGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCS 471

Query: 104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163
            +  +  ++N L+G +P+  G L  L  L L NN  +GE+P  L  CT +  LDL  N+L
Sbjct: 472 NIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHL 531

Query: 164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIP------PRVGNLSDMK-VEPPKSVQ---- 212
           +G IP  +G   PG   +  L   +   F+         VG L +   + P + +Q    
Sbjct: 532 TGEIPPRLG-RQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSL 590

Query: 213 HEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGK 272
                  +  G     FT    +  LDLS   L  +IP E+  ++ L  L LSHN L G+
Sbjct: 591 KSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGE 650

Query: 273 IPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLND 332
           IP  IG  + L   D S N+L G IP S ++L F+  ++LS N L+G IP   Q  TL  
Sbjct: 651 IPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTL-P 709

Query: 333 PSIYEGNLALCGDPLPK 349
            + Y  N  LCG PLP+
Sbjct: 710 ATQYANNPGLCGVPLPE 726

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
359488583	958	PREDICTED: LRR receptor-like serine/thre	0.997	0.370	0.573	1e-117
147789266	925	hypothetical protein VITISV_040339 [Viti	0.994	0.382	0.556	1e-113
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.994	0.357	0.556	1e-112
359496394	602	PREDICTED: LOW QUALITY PROTEIN: leucine-	0.997	0.589	0.563	1e-112
255536933	471	serine-threonine protein kinase, plant-t	0.941	0.711	0.554	1e-108
359488639	1097	PREDICTED: LRR receptor-like serine/thre	0.983	0.319	0.545	1e-107
296090227	1102	unnamed protein product [Vitis vinifera]	0.983	0.317	0.545	1e-107
359496390	1113	PREDICTED: LRR receptor-like serine/thre	0.983	0.314	0.540	1e-106
359488641	1012	PREDICTED: LRR receptor-like serine/thre	0.985	0.346	0.529	1e-104
359488591	981	PREDICTED: probable leucine-rich repeat	0.985	0.357	0.525	1e-102

>gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/422 (57%), Positives = 283/422 (67%), Gaps = 67/422 (15%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
           Q EL T+VLN A IS TIPDW W+L L L ELD+AYN+L GRVPNSL F++ A VDLSSN
Sbjct: 459 QNELTTIVLNNAGISGTIPDWLWKLDLQLSELDIAYNQLSGRVPNSLVFSYLANVDLSSN 518

Query: 62  NFEGRLPL------------------------------------------CIPKSIGNLK 79
            F+G LPL                                           IP S+G+L+
Sbjct: 519 LFDGPLPLWSSNVSTLYLRGNLFSGPIPQNIGQVMPILTDLDISWNSLNGSIPLSMGDLQ 578

Query: 80  QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYL 139
            LITLVISNNNLSGEIP  ++    LYI+DMSNNSLSG+IP S+GSL  LRFLVL NN L
Sbjct: 579 ALITLVISNNNLSGEIPQFWNKMPSLYIVDMSNNSLSGTIPRSLGSLTALRFLVLSNNNL 638

Query: 140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--------------------- 178
           SGELP  L+NC+ +ESLDLGDN  SGNIP+WIG SMP L                     
Sbjct: 639 SGELPSQLQNCSVLESLDLGDNKFSGNIPSWIGESMPSLLILALQSNFFSGNIPSEICAL 698

Query: 179 --LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS--VQHEGRLRVVTKGSERKYFTTLYL 234
             LHILDLSHN +SGFIPP  GNLS  K E       ++EGRL++V KG   +Y++TLYL
Sbjct: 699 SALHILDLSHNHVSGFIPPCFGNLSGFKSELSDDDLERYEGRLKLVAKGRALEYYSTLYL 758

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           VN LDLS+ +LS EIP ELTSL+ LGTLNLS N+L G IPE+IGN +WLETLDLSKNKLS
Sbjct: 759 VNSLDLSNNSLSGEIPIELTSLLKLGTLNLSSNNLGGNIPEKIGNLQWLETLDLSKNKLS 818

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPEN 354
           G IP SMAS+ F+ HLNL++NNLSG+IP  NQFQTL DPSIY+GNLALCG PL  +C +N
Sbjct: 819 GPIPMSMASITFLVHLNLAHNNLSGKIPTGNQFQTLIDPSIYQGNLALCGFPLTTECHDN 878

Query: 355 GG 356
            G
Sbjct: 879 NG 880

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789266|emb|CAN71149.1| hypothetical protein VITISV_040339 [Vitis vinifera]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/422 (55%), Positives = 278/422 (65%), Gaps = 68/422 (16%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
           Q EL T+VLN ARIS TIPDW W+L L L ELD+AYN+L GRVPNSL F++ A VDLSSN
Sbjct: 427 QNELTTVVLNNARISGTIPDWLWKLDLQLRELDIAYNQLSGRVPNSLVFSYLANVDLSSN 486

Query: 62  NFEGRLPL------------------------------------------CIPKSIGNLK 79
            F+G LPL                                           IP S+GNL+
Sbjct: 487 LFDGPLPLWSSNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPLSMGNLQ 546

Query: 80  QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYL 139
            LITLVISNNNLSGEIP  ++    LYI+DMSNNSLSG+IP+S+GSL  LRFLVL +N L
Sbjct: 547 ALITLVISNNNLSGEIPQFWNKMPSLYIVDMSNNSLSGTIPKSLGSLTALRFLVLSDNNL 606

Query: 140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--------------------- 178
           SGELP  L+NC+ +ESLDLGDN  SGNIP+WIG SM  L                     
Sbjct: 607 SGELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALRSNFFSGKIPSEICAL 666

Query: 179 --LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS--VQHEGRLRVVTKGSERKYFTTLYL 234
             LHILDLSHN++SGFIPP  GNLS  K E       ++EG L++V KG   +Y+  LYL
Sbjct: 667 SALHILDLSHNNVSGFIPPCFGNLSGFKSELSDDDLARYEGSLKLVAKGRALEYYDILYL 726

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           VN LDLS+ +LS EIP ELTSL+ LGTLNLS N+L G IPE IGN +WLETLDLS+NKLS
Sbjct: 727 VNSLDLSNNSLSGEIPIELTSLLKLGTLNLSSNNLGGTIPENIGNLQWLETLDLSRNKLS 786

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPEN 354
           G IP +M S+ F+ HLNL++NNLSG+IP  NQFQT  D SIY+GNLALCG PL  +C +N
Sbjct: 787 GRIPMTMVSMTFLAHLNLAHNNLSGKIPTGNQFQTF-DSSIYQGNLALCGFPLTTECHDN 845

Query: 355 GG 356
            G
Sbjct: 846 NG 847

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/422 (55%), Positives = 278/422 (65%), Gaps = 68/422 (16%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
           Q EL T+VLN ARIS TIPDW W+L+L L ELD+AYN+L GRVPNSL F++ A VDLSSN
Sbjct: 492 QNELTTVVLNNARISGTIPDWLWKLNLQLRELDIAYNQLSGRVPNSLVFSYLANVDLSSN 551

Query: 62  NFEGRLPL------------------------------------------CIPKSIGNLK 79
            F+G LPL                                           IP S+GNL+
Sbjct: 552 LFDGPLPLWSSNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPWSMGNLQ 611

Query: 80  QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYL 139
            LITLVISNNNLSGEIP  ++    LYI+DMSNNSLSG+IP S+GSL  LRFLVL +N L
Sbjct: 612 ALITLVISNNNLSGEIPQFWNKMPSLYIIDMSNNSLSGTIPRSLGSLTALRFLVLSDNNL 671

Query: 140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--------------------- 178
           SGELP  L+NC+ +ESLDLGDN  SGNIP+WIG SM  L                     
Sbjct: 672 SGELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALRSNFFSGKIPSEICAL 731

Query: 179 --LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS--VQHEGRLRVVTKGSERKYFTTLYL 234
             LHILDLSHN++SGFIPP  GNLS  K E       ++EG L++V KG   +Y+  LYL
Sbjct: 732 SALHILDLSHNNVSGFIPPCFGNLSGFKSELSDDDLARYEGSLKLVAKGRALEYYDILYL 791

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           VN LDLS+ +LS EIP ELTSL+ LGTLNLS N+L G IPE IGN +WLETLDLS+NKLS
Sbjct: 792 VNSLDLSNNSLSGEIPIELTSLLKLGTLNLSSNNLGGTIPENIGNLQWLETLDLSRNKLS 851

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPEN 354
           G IP +M S+ F+ HLNL++NNLSG+IP  NQFQT  D SIY+GNLALCG PL  +C +N
Sbjct: 852 GRIPMTMVSMTFLAHLNLAHNNLSGKIPTGNQFQTF-DQSIYQGNLALCGFPLTTECHDN 910

Query: 355 GG 356
            G
Sbjct: 911 NG 912

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496394|ref|XP_003635226.1| PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat receptor-like protein kinase PXL1-like, partial [Vitis vinifera]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/422 (56%), Positives = 279/422 (66%), Gaps = 67/422 (15%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
           Q EL T+VLN A IS TIPDW WQL L L EL +AYN+L GRVPNSL F++ A VDLSSN
Sbjct: 59  QNELTTVVLNNAGISGTIPDWLWQLDLQLSELHIAYNQLSGRVPNSLVFSYLANVDLSSN 118

Query: 62  NFEGRLPL------------------------------------------CIPKSIGNLK 79
            F+G LPL                                           IP S+GNL+
Sbjct: 119 LFDGPLPLWSSNVSTLYLRDNLFSGPIPPNIGEAMPILTDLDISWNSLNGSIPLSMGNLQ 178

Query: 80  QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYL 139
            L+TLVISNN+LSGEIP  ++    LYI+DMSNNSL G+IP S+GSL TLRFLVL NN L
Sbjct: 179 ALMTLVISNNHLSGEIPQFWNKMPSLYIVDMSNNSLPGTIPRSLGSLMTLRFLVLSNNNL 238

Query: 140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--------------------- 178
           SGELP  L+NC+ +ESLDLGDN  SGNIP+WIG SMP L                     
Sbjct: 239 SGELPSHLQNCSALESLDLGDNKFSGNIPSWIGESMPSLLILALRSNFFSGNIPSEICAL 298

Query: 179 --LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS--VQHEGRLRVVTKGSERKYFTTLYL 234
             LHILDLSH+++SGFIPP   NLS  K E       ++EGRL + +KG   +Y+ +LYL
Sbjct: 299 SALHILDLSHDNVSGFIPPCFRNLSGFKSELSDDDIARYEGRLNLDSKGRAIEYYHSLYL 358

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           VN LDLS  NLS EIP ELTSL+ LGTLNLS N+L G IPE+IGN + LETLDLS+NKLS
Sbjct: 359 VNSLDLSYNNLSGEIPIELTSLLKLGTLNLSSNNLGGTIPEKIGNLQXLETLDLSRNKLS 418

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPEN 354
           G IP SMAS+IF+ HLNLS+NNLSG+IP  NQFQTL DPSIY+GNLALCG PL  +C +N
Sbjct: 419 GPIPMSMASIIFLVHLNLSHNNLSGKIPTGNQFQTLIDPSIYQGNLALCGFPLTNECHDN 478

Query: 355 GG 356
            G
Sbjct: 479 NG 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536933|ref|XP_002509533.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549432|gb|EEF50920.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/402 (55%), Positives = 261/402 (64%), Gaps = 67/402 (16%)

Query: 19  IPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPL--------- 69
           +PDWFWQL L +DELDVAY++L GR+PNS+GF     VDLSSN+F+G LPL         
Sbjct: 1   MPDWFWQLVLHMDELDVAYHQLSGRIPNSVGFLSATVVDLSSNSFQGPLPLWSTKMAKLY 60

Query: 70  ---------------------------------CIPKSIGNLKQLITLVISNNNLSGEIP 96
                                             IP SIGN+K L TLVISNNNLSGEIP
Sbjct: 61  LQHNMFSRLIPDDIGQMMPYLTDLDISWNSLNGSIPTSIGNIKTLATLVISNNNLSGEIP 120

Query: 97  LLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESL 156
             + N   LYILD+SNNSL G I +SIGS RTLRFLVL  N LSGE+P S+KNC+ ++SL
Sbjct: 121 QFWVNILSLYILDVSNNSLYGRIHQSIGSFRTLRFLVLSKNNLSGEIPSSMKNCSLLDSL 180

Query: 157 DLGDNNLSGNIPAWIGASMPGLL-----------------------HILDLSHNDLSGFI 193
           +LGDN  SG +P+WIG SM  L+                       HILDLS N+LSG I
Sbjct: 181 NLGDNKFSGRLPSWIGESMKLLMILNLQSNSFNGNIPPNICILSNIHILDLSQNNLSGKI 240

Query: 194 PPRVGNLSDMKVE--PPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPA 251
           PP +GNL  +K+E     +V++EGRLR+V KG E +Y++ LYLVN LDLS+ NLS  IP 
Sbjct: 241 PPCIGNLIGLKIELSYKDTVRYEGRLRIVVKGRELEYYSILYLVNSLDLSNNNLSGRIPM 300

Query: 252 ELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN 311
           EL  L  LGTLNLS N+L G IP EIG   WLET DLS+NK SG IPPSMA L F+NHLN
Sbjct: 301 ELIELAKLGTLNLSINNLSGSIPLEIGKLGWLETFDLSRNKFSGLIPPSMAQLTFLNHLN 360

Query: 312 LSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPE 353
           LSYNNLSG+IP  NQFQ+LNDPSIY GN ALCG PLP KC E
Sbjct: 361 LSYNNLSGKIPIANQFQSLNDPSIYVGNTALCGMPLPTKCYE 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488639|ref|XP_003633795.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/416 (54%), Positives = 269/416 (64%), Gaps = 66/416 (15%)

Query: 1    NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
            NQ +L+TLVLN ARISDTIPDWFW+L L +D LD A N+L GRVPNSL F   A VDLSS
Sbjct: 596  NQNQLKTLVLNNARISDTIPDWFWKLDLQVDLLDFANNQLSGRVPNSLKFQEQAIVDLSS 655

Query: 61   NNFEGRLPL------------------------------------------CIPKSIGNL 78
            N F G  P                                            IP SIG +
Sbjct: 656  NRFHGPFPHFSSKLSSLYLRDNSFSGPMPRDVGKTMPWLINFDVSWNSLNGTIPLSIGKI 715

Query: 79   KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY 138
              L +LV+SNNNLSGEIPL++++   LYI+DM+NNSLSG IP S+G+L +L FL+L  N 
Sbjct: 716  TGLASLVLSNNNLSGEIPLIWNDKPDLYIVDMANNSLSGEIPSSMGTLNSLMFLILSGNK 775

Query: 139  LSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-------------------- 178
            LSGE+P SL+NC  M+S DLGDN LSGN+P+WIG     L                    
Sbjct: 776  LSGEIPSSLQNCKIMDSFDLGDNRLSGNLPSWIGEMQSLLILRLRSNFFDGNIPSQVCSL 835

Query: 179  --LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
              LHILDL+H++LSGFIP  +GNLS M  E   S ++EG+L VV KG E  Y  TLYLVN
Sbjct: 836  SHLHILDLAHDNLSGFIPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVN 894

Query: 237  LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
             +DLS  NLS ++P EL +L  LGTLNLS NHL G IPE+IG+   LETLDLS+N+LSG 
Sbjct: 895  SIDLSDNNLSGKLP-ELRNLSRLGTLNLSINHLTGNIPEDIGSLSQLETLDLSRNQLSGP 953

Query: 297  IPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP 352
            IPPSM SL  +NHLNLSYN LSG+IP +NQFQTLNDPSIY  NLALCG+PLP KCP
Sbjct: 954  IPPSMVSLTSLNHLNLSYNKLSGKIPTSNQFQTLNDPSIYTNNLALCGEPLPMKCP 1009

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090227|emb|CBI40046.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/416 (54%), Positives = 269/416 (64%), Gaps = 66/416 (15%)

Query: 1    NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
            NQ +L+TLVLN ARISDTIPDWFW+L L +D LD A N+L GRVPNSL F   A VDLSS
Sbjct: 601  NQNQLKTLVLNNARISDTIPDWFWKLDLQVDLLDFANNQLSGRVPNSLKFQEQAIVDLSS 660

Query: 61   NNFEGRLPL------------------------------------------CIPKSIGNL 78
            N F G  P                                            IP SIG +
Sbjct: 661  NRFHGPFPHFSSKLSSLYLRDNSFSGPMPRDVGKTMPWLINFDVSWNSLNGTIPLSIGKI 720

Query: 79   KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY 138
              L +LV+SNNNLSGEIPL++++   LYI+DM+NNSLSG IP S+G+L +L FL+L  N 
Sbjct: 721  TGLASLVLSNNNLSGEIPLIWNDKPDLYIVDMANNSLSGEIPSSMGTLNSLMFLILSGNK 780

Query: 139  LSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-------------------- 178
            LSGE+P SL+NC  M+S DLGDN LSGN+P+WIG     L                    
Sbjct: 781  LSGEIPSSLQNCKIMDSFDLGDNRLSGNLPSWIGEMQSLLILRLRSNFFDGNIPSQVCSL 840

Query: 179  --LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
              LHILDL+H++LSGFIP  +GNLS M  E   S ++EG+L VV KG E  Y  TLYLVN
Sbjct: 841  SHLHILDLAHDNLSGFIPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVN 899

Query: 237  LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
             +DLS  NLS ++P EL +L  LGTLNLS NHL G IPE+IG+   LETLDLS+N+LSG 
Sbjct: 900  SIDLSDNNLSGKLP-ELRNLSRLGTLNLSINHLTGNIPEDIGSLSQLETLDLSRNQLSGP 958

Query: 297  IPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP 352
            IPPSM SL  +NHLNLSYN LSG+IP +NQFQTLNDPSIY  NLALCG+PLP KCP
Sbjct: 959  IPPSMVSLTSLNHLNLSYNKLSGKIPTSNQFQTLNDPSIYTNNLALCGEPLPMKCP 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496390|ref|XP_002268557.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/416 (54%), Positives = 270/416 (64%), Gaps = 66/416 (15%)

Query: 1    NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
            NQ +L+TLVLN ARISDTIPDWFW+L L L+ LDVA N+L GRVPNSL F   A VDLSS
Sbjct: 612  NQNQLKTLVLNNARISDTIPDWFWKLDLQLNLLDVANNQLSGRVPNSLKFPKNAVVDLSS 671

Query: 61   NNFEGRLPL------------------------------------------CIPKSIGNL 78
            N F G +P                                            IP SIG +
Sbjct: 672  NRFHGPIPHFSSNLSSLYLRDNLFSGPIPLDVGKTMPWLTNFDVSWNSLNGTIPLSIGKI 731

Query: 79   KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY 138
              L +LV+SNN+LSGEIPL++++   LYI+DM+NNSLSG IP S+G+L +L FL+L  N 
Sbjct: 732  TGLASLVLSNNHLSGEIPLIWNDKPDLYIVDMANNSLSGEIPSSMGTLNSLMFLILSGNK 791

Query: 139  LSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-------------------- 178
            LSGE+P SL+NC  M+S DLGDN LSGN+P+WIG     L                    
Sbjct: 792  LSGEIPSSLQNCKIMDSFDLGDNRLSGNLPSWIGEMQSLLILRLRSNFFDGNIPSQVCSL 851

Query: 179  --LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
              LHILDL+H++LSGFIP  +GNLS M  E   S ++EG+L VV KG E  Y  TLYLVN
Sbjct: 852  SHLHILDLAHDNLSGFIPSCLGNLSGMATE-ISSERYEGQLSVVMKGRELIYQNTLYLVN 910

Query: 237  LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
             +DLS  NLS ++P EL +L  LGTLNLS NHL G IPE+IG+   LETLDLS+N+LSG 
Sbjct: 911  SIDLSDNNLSGKLP-ELRNLSRLGTLNLSINHLTGNIPEDIGSLSQLETLDLSRNQLSGP 969

Query: 297  IPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP 352
            IPPSM SL  +NHLNLSYN LSG+IP +NQFQT NDPSIY+ NL LCG+PLP KCP
Sbjct: 970  IPPSMVSLTSLNHLNLSYNKLSGKIPTSNQFQTFNDPSIYKNNLVLCGEPLPMKCP 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488641|ref|XP_003633796.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/417 (52%), Positives = 262/417 (62%), Gaps = 66/417 (15%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           NQ +L+TLVLN ARISDTIPDWFW+L L +D LD A N+L GRVPNSL F   A VDLSS
Sbjct: 508 NQNQLKTLVLNNARISDTIPDWFWKLDLQVDLLDFANNQLSGRVPNSLKFQEQAIVDLSS 567

Query: 61  NNFEGRLPL------------------------------------------CIPKSIGNL 78
           N F G  P                                            IP S G L
Sbjct: 568 NRFHGPFPHFSSKLNSLYLRDNSFSGPMPRDVGKTMPWLINFDVSWNSLNGTIPLSFGKL 627

Query: 79  KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY 138
             L+TLVISNN+LSG IP  ++    LY+LDM+NN+LSG +P S+GSLR +RFL++ NN+
Sbjct: 628 TNLLTLVISNNHLSGGIPEFWNGLPDLYVLDMNNNNLSGELPSSMGSLRFVRFLMISNNH 687

Query: 139 LSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-------------------- 178
           LSGE+P +L+NCT + +LDLG N  SGN+PAWIG  MP L                    
Sbjct: 688 LSGEIPSALQNCTAIRTLDLGGNRFSGNVPAWIGERMPNLLILRLRSNLFHGSIPSQLCT 747

Query: 179 ---LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV 235
              LHILDL  N+LSGFIP  VGNLS M V    S ++E  L V  KG E  Y + LYLV
Sbjct: 748 LSALHILDLGENNLSGFIPSCVGNLSGM-VSEIDSQRYEAELMVWRKGREDLYKSILYLV 806

Query: 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
           N +DLS+ NLS E+P  +T+L  LGTLNLS NHL GKIP++IG+ + LETLDLS+N+LSG
Sbjct: 807 NSMDLSNNNLSGEVPEGVTNLSRLGTLNLSINHLTGKIPDKIGSLQGLETLDLSRNQLSG 866

Query: 296 SIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP 352
            IPP MASL  +NHLNLSYNNLSG IP  NQ QTL+DPSIYE N ALCG P   KCP
Sbjct: 867 VIPPGMASLTSLNHLNLSYNNLSGRIPTGNQLQTLDDPSIYENNPALCGPPTTAKCP 923

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488591|ref|XP_003633783.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/417 (52%), Positives = 263/417 (63%), Gaps = 66/417 (15%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           NQTEL ++VL+ ARIS TIP+WFW+L L LDELD+  N L GRVPNS+ F   ATVDL  
Sbjct: 477 NQTELTSVVLSNARISGTIPEWFWKLDLHLDELDIGSNNLGGRVPNSMKFLPGATVDLEE 536

Query: 61  NNFEGRLPL------------------------------------------CIPKSIGNL 78
           NNF+G LPL                                           IP S G L
Sbjct: 537 NNFQGPLPLWSSNVTRLNLYDNFFSGPIPQELGERMSMLTDLDLSWNALYGTIPLSFGKL 596

Query: 79  KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY 138
             L+TLVISNN+LSG IP  ++    LY+LDM+NN+LSG +P S+GSLR +RFL++ NN+
Sbjct: 597 TNLLTLVISNNHLSGGIPEFWNGLPDLYVLDMNNNNLSGELPSSMGSLRFVRFLMISNNH 656

Query: 139 LSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-------------------- 178
           LSGE+P +L+NCT + +LDLG N  SGN+PAWIG  MP L                    
Sbjct: 657 LSGEIPSALQNCTAIHTLDLGGNRFSGNVPAWIGERMPNLLILRLRSNLFHGSIPSQLCT 716

Query: 179 ---LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV 235
              LHILDL  N+LSGFIP  VGNLS M V    S ++E  L V  KG E  Y + LYLV
Sbjct: 717 LSSLHILDLGENNLSGFIPSCVGNLSGM-VSEIDSQRYEAELMVWRKGREDLYKSILYLV 775

Query: 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
           N +DLS+ NLS E+P  +T+L  LGTLNLS NHL GKIP++I + + LETLDLS+N+LSG
Sbjct: 776 NSMDLSNNNLSGEVPEGVTNLSRLGTLNLSINHLTGKIPDKIASLQGLETLDLSRNQLSG 835

Query: 296 SIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP 352
            IPP MASL  +NHLNLSYNNLSG IP  NQ QTL+DPSIYE N ALCG P   KCP
Sbjct: 836 VIPPGMASLTSLNHLNLSYNNLSGRIPTGNQLQTLDDPSIYENNPALCGPPTTAKCP 892

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.938	0.369	0.386	4.2e-55
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.963	0.366	0.365	1.1e-44
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.949	0.416	0.340	2.2e-44
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.932	0.291	0.355	4e-44
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.946	0.287	0.353	5.4e-44
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.943	0.281	0.371	1.5e-43
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.926	0.290	0.362	1.7e-43
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.941	0.335	0.346	3.7e-41
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.859	0.269	0.362	3.9e-41
UNIPROTKB|Q5Z9N5	994	P0481E08.42 "Os06g0717200 prot	0.946	0.339	0.338	1.3e-40

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 4.2e-55, P = 4.2e-55
 Identities = 145/375 (38%), Positives = 203/375 (54%)

Query:     4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAT--VDLSSN 61
             +L T+ L+      T P W    S    EL +  N   G +P ++    P    + L SN
Sbjct:   546 KLNTIDLSSNNFEGTFPLW----STNATELRLYENNFSGSLPQNIDVLMPRMEKIYLFSN 601

Query:    62 NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPE 121
             +F G     IP S+  +  L  L +  N+ SG  P  +     L+ +D+S N+LSG IPE
Sbjct:   602 SFTGN----IPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPE 657

Query:   122 SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGA-------- 173
             S+G L +L  L+L  N L G++P SL+NC+ + ++DLG N L+G +P+W+G         
Sbjct:   658 SLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLR 717

Query:   174 ----SMPGL----------LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV 219
                 S  G           L ILDLS N +SG IP  + NL+ +       V  +  + +
Sbjct:   718 LQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNNEV-FQNLVFI 776

Query:   220 VTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN 279
             VT+   R+Y     + N ++LS  N+S EIP E+  L++L  LNLS N + G IPE+I  
Sbjct:   777 VTRA--REYEA---IANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISE 831

Query:   280 FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN 339
                LETLDLSKNK SG+IP S A++  +  LNLS+N L G IP   +FQ   DPSIY GN
Sbjct:   832 LSRLETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQ---DPSIYIGN 888

Query:   340 LALCGDPLPKKCPEN 354
               LCG PLPKKCP++
Sbjct:   889 ELLCGKPLPKKCPKD 903

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.1e-44, P = 1.1e-44
 Identities = 135/369 (36%), Positives = 190/369 (51%)

Query:     1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLS 59
             N T LR L ++   +S  IP W ++    LD + ++ N L G +P SL G  F + +DLS
Sbjct:   509 NSTMLRILDMSNNGLSGAIPRWLFEFPY-LDYVLISNNFLEGTIPPSLLGMPFLSFLDLS 567

Query:    60 SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
              N F G LP  +   +G     I + + NNN +G IP     S  + ILD+ NN LSGSI
Sbjct:   568 GNQFSGALPSHVDSELG-----IYMFLHNNNFTGPIPDTLLKS--VQILDLRNNKLSGSI 620

Query:   120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
             P+     +++  L+L+ N L+G +P  L + + +  LDL DN L+G IP+ +     G L
Sbjct:   621 PQ-FDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRL 679

Query:   180 HILDLSHNDLSGFIPPRVGN-------LSDMKVEPPKSVQHEGRLRVVTKG-----SERK 227
                 ++ N    F+   +         L D K+E  +S   E  ++   K      S R 
Sbjct:   680 QEDAMALNIPPSFLQTSLEMELYKSTFLVD-KIEVDRSTYQETEIKFAAKQRYDSYSGRS 738

Query:   228 YFTT--LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLET 285
              F+   L L+  +DLS+  LS  IP EL  L+ L TLNLSHN L+G IP        +E+
Sbjct:   739 EFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVES 798

Query:   286 LDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGD 345
             LDLS N L GSIP  ++SL  +   ++S NNLSG IP   QF T  + S Y GN  LCG 
Sbjct:   799 LDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEES-YLGNPLLCGP 857

Query:   346 PLPKKCPEN 354
             P  + C  N
Sbjct:   858 PTSRSCETN 866

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 2.2e-44, P = 2.2e-44
 Identities = 121/355 (34%), Positives = 186/355 (52%)

Query:     2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
             ++++  L+L++   S ++P    ++   L  LD++ N L G  P     ++   +D+SSN
Sbjct:   418 ESQVMVLMLSENNFSGSVPKSITKIPF-LKLLDLSKNRLSGEFPRFRPESYLEWLDISSN 476

Query:    62 NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPE 121
              F G     +P   G    +  L++S NN SGE P  F N S+L  LD+ +N +SG++  
Sbjct:   477 EFSGD----VPAYFGGSTSM--LLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVAS 530

Query:   122 SIGSLRT-LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180
              I  L + +  L LRNN L G +P  + N T ++ LDL +NNL G +P+ +G      L 
Sbjct:   531 LISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGN-----LT 585

Query:   181 ILDLSHNDLSGFIPPRVGNLSDM-KVEPPKSVQHEGRLRVVT--KGSERKYFT-TLYLVN 236
              +  S    +  I P   + +D+  +E    ++ E    +V   K S++  F    YL  
Sbjct:   586 CMIKSPEPSAMTIRPYFSSYTDIPNIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYT 645

Query:   237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
             LLDLS   L  EIP  L +L  L  LNLS+N   G IP+  G+ E +E+LDLS N L+G 
Sbjct:   646 LLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGE 705

Query:   297 IPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKC 351
             IP +++ L  +N L+L  N L G IP + Q   LN+P+IY  N  +CG  +   C
Sbjct:   706 IPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLNNPNIYANNSGICGMQIQVPC 760

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 4.0e-44, P = 4.0e-44
 Identities = 124/349 (35%), Positives = 184/349 (52%)

Query:     5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV-DLSSNNF 63
             L T+ L +   S  IP     L   L+ L++  N L G +P+ +      T+ +LS N F
Sbjct:   412 LTTISLGRNGFSGRIPSDLLSL-YGLETLNLNENHLTGAIPSEITKLANLTILNLSFNRF 470

Query:    64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
              G     +P ++G+LK L  L IS   L+G IP+  S    L +LD+S   +SG +P  +
Sbjct:   471 SGE----VPSNVGDLKSLSVLNISGCGLTGRIPVSISGLMKLQVLDISKQRISGQLPVEL 526

Query:   124 GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILD 183
               L  L+ + L NN L G +P    +   ++ L+L  N  SG+IP   G      L +L 
Sbjct:   527 FGLPDLQVVALGNNLLGGVVPEGFSSLVSLKYLNLSSNLFSGHIPKNYGFLKS--LQVLS 584

Query:   184 LSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243
             LSHN +SG IPP +GN S ++V    S   +G + V        Y + L L+  LDLS  
Sbjct:   585 LSHNRISGTIPPEIGNCSSLEVLELGSNSLKGHIPV--------YVSKLSLLKKLDLSHN 636

Query:   244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS 303
             +L+  IP +++    L +L L+ N L G+IPE +     L  LDLS N+L+ +IP S++ 
Sbjct:   637 SLTGSIPDQISKDSSLESLLLNSNSLSGRIPESLSRLTNLTALDLSSNRLNSTIPSSLSR 696

Query:   304 LIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP 352
             L F+N+ NLS N+L GEIP     +  N P+++  N  LCG PL  +CP
Sbjct:   697 LRFLNYFNLSRNSLEGEIPEALAARFTN-PTVFVKNPGLCGKPLGIECP 744

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 5.4e-44, P = 5.4e-44
 Identities = 125/354 (35%), Positives = 182/354 (51%)

Query:     1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV-DLS 59
             N + L TL +    ++ T+     +L   L  L V+YN L G +P  +G      +  L 
Sbjct:   453 NCSNLETLSVADNNLTGTLKPLIGKLQ-KLRILQVSYNSLTGPIPREIGNLKDLNILYLH 511

Query:    60 SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
             SN F GR    IP+ + NL  L  L + +N+L G IP    +   L +LD+SNN  SG I
Sbjct:   512 SNGFTGR----IPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQI 567

Query:   120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
             P     L +L +L L+ N  +G +P SLK+ + + + D+ DN L+G IP  + AS+  + 
Sbjct:   568 PALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ 627

Query:   180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD 239
               L+ S+N L+G IP  +G     K+E  + +     L     GS  +       V  LD
Sbjct:   628 LYLNFSNNLLTGTIPKELG-----KLEMVQEIDLSNNL---FSGSIPRSLQACKNVFTLD 679

Query:   240 LSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
              S  NLS  IP E+   +  + +LNLS N   G+IP+  GN   L +LDLS N L+G IP
Sbjct:   680 FSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIP 739

Query:   299 PSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLP-KKC 351
              S+A+L  + HL L+ NNL G +P +  F+ +N   +  GN  LCG   P K C
Sbjct:   740 ESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLM-GNTDLCGSKKPLKPC 792

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 1.5e-43, P = 1.5e-43
 Identities = 138/371 (37%), Positives = 200/371 (53%)

Query:     1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLS 59
             N   L+ LVL+  +++  IP    +L+ +L  L++  N  +G++P  LG      T+DL 
Sbjct:   470 NAASLKRLVLSDNQLTGEIPREIGKLT-SLSVLNLNANMFQGKIPVELGDCTSLTTLDLG 528

Query:    60 SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP---------LLFSNSSFLY---I 107
             SNN +G+    IP  I  L QL  LV+S NNLSG IP         +   + SFL    I
Sbjct:   529 SNNLQGQ----IPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGI 584

Query:   108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI 167
              D+S N LSG IPE +G    L  + L NN+LSGE+P SL   T +  LDL  N L+G+I
Sbjct:   585 FDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSI 644

Query:   168 PAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDM-KVEPPKSVQHEGRLRVVTKGSER 226
             P  +G S+   L  L+L++N L+G IP   G L  + K+   K+ + +G +   + G+ +
Sbjct:   645 PKEMGNSLK--LQGLNLANNQLNGHIPESFGLLGSLVKLNLTKN-KLDGPVPA-SLGNLK 700

Query:   227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETL 286
             +       +  +DLS  NLS E+ +EL+++  L  L +  N   G+IP E+GN   LE L
Sbjct:   701 E-------LTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYL 753

Query:   287 DLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS--IYEGNLALCG 344
             D+S+N LSG IP  +  L  +  LNL+ NNL GE+P+    Q   DPS  +  GN  LCG
Sbjct:   754 DVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQ---DPSKALLSGNKELCG 810

Query:   345 DPLPKKCPENG 355
               +   C   G
Sbjct:   811 RVVGSDCKIEG 821

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 127/350 (36%), Positives = 176/350 (50%)

Query:     5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNF 63
             L+ L L +   S  +P     L   L+ L++  N L G  P  L      + +DLS N F
Sbjct:   406 LKVLSLGRNSFSGYVPSSMVNLQ-QLERLNLGENNLNGSFPVELMALTSLSELDLSGNRF 464

Query:    64 EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
              G +P+    SI NL  L  L +S N  SGEIP    N   L  LD+S  ++SG +P  +
Sbjct:   465 SGAVPV----SISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVEL 520

Query:   124 GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILD 183
               L  ++ + L+ N  SG +P    +   +  ++L  N+ SG IP   G     LL  L 
Sbjct:   521 SGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLR--LLVSLS 578

Query:   184 LSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243
             LS N +SG IPP +GN S ++V   +S     RL     G      + L  + +LDL   
Sbjct:   579 LSDNHISGSIPPEIGNCSALEVLELRS----NRLM----GHIPADLSRLPRLKVLDLGQN 630

Query:   244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS 303
             NLS EIP E++    L +L+L HNHL G IP        L  +DLS N L+G IP S+A 
Sbjct:   631 NLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLA- 689

Query:   304 LIFMN--HLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKC 351
             LI  N  + N+S NNL GEIP  +    +N+ S + GN  LCG PL ++C
Sbjct:   690 LISSNLVYFNVSSNNLKGEIP-ASLGSRINNTSEFSGNTELCGKPLNRRC 738

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.7e-41, P = 3.7e-41
 Identities = 126/364 (34%), Positives = 184/364 (50%)

Query:     5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFN--FPATVDLSSNN 62
             L  L ++  +++  IP W  +    L  L ++ N L G +P SL FN  +   +DLSSN 
Sbjct:   551 LNVLDISNNKLTGVIPSWIGERQ-GLFALQLSNNMLEGEIPTSL-FNISYLQLLDLSSNR 608

Query:    63 FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP-LLFSNSSFLYILDMSNNSLSGSIPE 121
               G     IP  + ++     L++ NNNLSG IP  L  N   + +LD+ NN LSG++PE
Sbjct:   609 LSGD----IPPHVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPE 661

Query:   122 SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHI 181
              I + + +  L+LR N  +G++P    + + ++ LDL +N  +G+IP+ +  +  GL   
Sbjct:   662 FINT-QNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKG 720

Query:   182 LDLSHNDLSGFIPPRVGNLSD-------MKVEPPKSVQH---EGRLRVVTKGSERKYFT- 230
              D    D    +P R G   D       + ++    V     + ++   TK     Y   
Sbjct:   721 DDSYRYD----VPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGG 776

Query:   231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK 290
              L L+  +DLS   LS EIP EL  LV L  LNLSHN+L G I E     + +E+LDLS 
Sbjct:   777 NLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSF 836

Query:   291 NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKK 350
             N+L G IP  +  +I +   N+SYNNLSG +P   QF T    S Y GN  LCG  +   
Sbjct:   837 NRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQS-YFGNPLLCGKSIDIS 895

Query:   351 CPEN 354
             C  N
Sbjct:   896 CASN 899

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 3.9e-41, P = 3.9e-41
 Identities = 119/328 (36%), Positives = 176/328 (53%)

Query:     1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAT-VDLS 59
             N +EL  L L    +S T+P    +L   L+++ +  N L G +P  +GF      +DLS
Sbjct:   273 NCSELINLFLYDNDLSGTLPKELGKLQ-NLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLS 331

Query:    60 SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
              N F G     IPKS GNL  L  L++S+NN++G IP + SN + L    +  N +SG I
Sbjct:   332 MNYFSGT----IPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLI 387

Query:   120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
             P  IG L+ L   +   N L G +P  L  C  +++LDL  N L+G++PA +   +  L 
Sbjct:   388 PPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGL-FQLRNLT 446

Query:   180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTK---GSERKYFTTLYLVN 236
              +L +S N +SG IP  +GN + +            RLR+V     G   K    L  ++
Sbjct:   447 KLLLIS-NAISGVIPLEIGNCTSLV-----------RLRLVNNRITGEIPKGIGFLQNLS 494

Query:   237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
              LDLS  NLS  +P E+++   L  LNLS+N L G +P  + +   L+ LD+S N L+G 
Sbjct:   495 FLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGK 554

Query:   297 IPPSMASLIFMNHLNLSYNNLSGEIPNT 324
             IP S+  LI +N L LS N+ +GEIP++
Sbjct:   555 IPDSLGHLISLNRLILSKNSFNGEIPSS 582

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 442 (160.7 bits), Expect = 1.3e-40, P = 1.3e-40
 Identities = 121/357 (33%), Positives = 189/357 (52%)

Query:     3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSN 61
             + L +L L+   ++  IP     LS  L  L++  N LRG +P+ + GF     + L  N
Sbjct:   293 SSLASLDLSVNDLAGEIPPSLANLS-NLKLLNLFRNHLRGSIPDFVAGFAQLEVLQLWDN 351

Query:    62 NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPE 121
             N  G +P  + K+ G LK   TL ++ N+L+G IP        L +L +  N L G IP+
Sbjct:   352 NLTGNIPAGLGKN-GRLK---TLDLATNHLTGPIPADLCAGRRLEMLVLMENGLFGPIPD 407

Query:   122 SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHI 181
             S+G  +TL  + L  N+L+G +P  L N      ++L DN L+G +P  IG    G+L  
Sbjct:   408 SLGDCKTLTRVRLAKNFLTGPVPAGLFNLPQANMVELTDNLLTGELPDVIGGDKIGMLL- 466

Query:   182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241
               L +N + G IPP +GNL  ++    +S    G L     G+ +        ++ L++S
Sbjct:   467 --LGNNGIGGRIPPAIGNLPALQTLSLESNNFSGALPPEI-GNLKN-------LSRLNVS 516

Query:   242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
                L+  IP EL     L  ++LS N   G+IPE I + + L TL++S+N+L+G +PP M
Sbjct:   517 GNALTGAIPDELIRCASLAAVDLSRNGFSGEIPESITSLKILCTLNVSRNRLTGELPPEM 576

Query:   302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPEN--GG 356
             +++  +  L++SYN+LSG +P   QF   N+ S + GN  LCG P+   CP +  GG
Sbjct:   577 SNMTSLTTLDVSYNSLSGPVPMQGQFLVFNESS-FVGNPGLCGGPVADACPPSMAGG 632

GO:0010080 "regulation of floral meristem growth" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-28
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  162 bits (411), Expect = 4e-44
 Identities = 122/346 (35%), Positives = 184/346 (53%), Gaps = 24/346 (6%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--ATVDLSS 60
            +L +L L+   +S  IP+   QL   L+ L +  N   G++P +L  + P    + L S
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWS 341

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N F G     IPK++G    L  L +S NNL+GEIP    +S  L+ L + +NSL G IP
Sbjct: 342 NKFSGE----IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI--PAWIGASMPGL 178
           +S+G+ R+LR + L++N  SGELP        +  LD+ +NNL G I    W    MP L
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW---DMPSL 454

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
             +L L+ N   G +P   G+         K +++    R    G+  +   +L  +  L
Sbjct: 455 -QMLSLARNKFFGGLPDSFGS---------KRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
            LS   LS EIP EL+S   L +L+LSHN L G+IP        L  LDLS+N+LSG IP
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 299 PSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCG 344
            ++ ++  +  +N+S+N+L G +P+T  F  +N  ++  GN+ LCG
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV-AGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (387), Expect = 5e-41
 Identities = 115/327 (35%), Positives = 178/327 (54%), Gaps = 21/327 (6%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV---D 57
           N + + ++ L+   IS  I    ++L   +  ++++ N+L G +P+ + F   +++   +
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPY-IQTINLSNNQLSGPIPDDI-FTTSSSLRYLN 124

Query: 58  LSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG 117
           LS+NNF G +P       G++  L TL +SNN LSGEIP    + S L +LD+  N L G
Sbjct: 125 LSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
            IP S+ +L +L FL L +N L G++P  L     ++ + LG NNLSG IP  IG  +  
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTS 237

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
           L H LDL +N+L+G IP  +GNL +++        ++ +L     G       +L  +  
Sbjct: 238 LNH-LDLVYNNLTGPIPSSLGNLKNLQY----LFLYQNKL----SGPIPPSIFSLQKLIS 288

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           LDLS  +LS EIP  +  L +L  L+L  N+  GKIP  + +   L+ L L  NK SG I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 298 PPSMASLIFMNHLNLSYNNLSGEIPNT 324
           P ++     +  L+LS NNL+GEIP  
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  144 bits (365), Expect = 5e-38
 Identities = 115/328 (35%), Positives = 165/328 (50%), Gaps = 36/328 (10%)

Query: 5   LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNF 63
           L TL L+   +S  IP+     S +L  LD+  N L G++PNSL        + L+SN  
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 64  EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
            G+    IP+ +G +K L  + +  NNLSGEIP      + L  LD+  N+L+G IP S+
Sbjct: 201 VGQ----IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 124 GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILD 183
           G+L+ L++L L  N LSG +P S+ +   + SLDL DN+LSG IP  +   +   L IL 
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQN-LEILH 314

Query: 184 LSHNDLSGFIPPRVGNLSDMKV----------EPPKSVQHEGRLRVVTKGSERKYFTTLY 233
           L  N+ +G IP  + +L  ++V          E PK++     L V              
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV-------------- 360

Query: 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293
               LDLS+ NL+ EIP  L S  +L  L L  N L G+IP+ +G    L  + L  N  
Sbjct: 361 ----LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 294 SGSIPPSMASLIFMNHLNLSYNNLSGEI 321
           SG +P     L  +  L++S NNL G I
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (353), Expect = 2e-36
 Identities = 97/256 (37%), Positives = 142/256 (55%), Gaps = 14/256 (5%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL-RTLRFLVLR 135
           N  +++++ +S  N+SG+I        ++  +++SNN LSG IP+ I +   +LR+L L 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 136 NNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPP 195
           NN  +G +P        +E+LDL +N LSG IP  IG+     L +LDL  N L G IP 
Sbjct: 127 NNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSS--LKVLDLGGNVLVGKIPN 182

Query: 196 RVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTS 255
            + NL+ ++     S Q  G+  +  +  + K    +YL         NLS EIP E+  
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYL------GYNNLSGEIPYEIGG 234

Query: 256 LVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN 315
           L  L  L+L +N+L G IP  +GN + L+ L L +NKLSG IPPS+ SL  +  L+LS N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 316 NLSGEIPN-TNQFQTL 330
           +LSGEIP    Q Q L
Sbjct: 295 SLSGEIPELVIQLQNL 310

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  115 bits (290), Expect = 3e-28
 Identities = 81/224 (36%), Positives = 116/224 (51%), Gaps = 37/224 (16%)

Query: 100 SNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL-KNCTFMESLDL 158
           +NSS +  +D+S  ++SG I  +I  L  ++ + L NN LSG +P  +    + +  L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLR 218
            +NN +G+IP     S+P  L  LDLS+N LSG IP  +G+ S +KV             
Sbjct: 126 SNNNFTGSIP---RGSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKV------------- 168

Query: 219 VVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIG 278
                              LDL    L  +IP  LT+L  L  L L+ N LVG+IP E+G
Sbjct: 169 -------------------LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 279 NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322
             + L+ + L  N LSG IP  +  L  +NHL+L YNNL+G IP
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query: 71  IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130
           IP  I  L+ L ++ +S N++ G IP    + + L +LD+S NS +GSIPES+G L +LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 131 FLVLRNNYLSGELPLSL 147
            L L  N LSG +P +L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK 292
           + ++ L L +  L   IP +++ L HL ++NLS N + G IP  +G+   LE LDLS N 
Sbjct: 418 WFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 293 LSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSI-YEGNLALCGDPLPKKC 351
            +GSIP S+  L  +  LNL+ N+LSG +P     + L+  S  +  N  LCG P  + C
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI 167
           L + N  L G IP  I  LR L+ + L  N + G +P SL + T +E LDL  N+ +G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 168 PAWIGASMPGLLHILDLSHNDLSGFIPPRVG 198
           P  +G      L IL+L+ N LSG +P  +G
Sbjct: 483 PESLGQLT--SLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query: 84  LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGEL 143
           L + N  L G IP   S    L  +++S NS+ G+IP S+GS+ +L  L L  N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 144 PLSLKNCTFMESLDLGDNNLSGNIPAWIGA 173
           P SL   T +  L+L  N+LSG +PA +G 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 17  DTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNFEGRLPLCIPKSI 75
            T   WF      +D L +    LRG +PN +       +++LS N+  G     IP S+
Sbjct: 413 STKGKWF------IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN----IPPSL 462

Query: 76  GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGS--LRTLRFLV 133
           G++  L  L +S N+ +G IP      + L IL+++ NSLSG +P ++G   L    F  
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522

Query: 134 LRNNYLSG 141
             N  L G
Sbjct: 523 TDNAGLCG 530

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 132 LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSG 191
           L L N  L G +P  +     ++S++L  N++ GNIP  +G S+  L  +LDLS+N  +G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSL-EVLDLSYNSFNG 480

Query: 192 FIPPRVGNLSDMKV 205
            IP  +G L+ +++
Sbjct: 481 SIPESLGQLTSLRI 494

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF-MNHLNL 312
            +   + +++LS  ++ GKI   I    +++T++LS N+LSG IP  + +    + +LNL
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 313 SYNNLSGEIPN 323
           S NN +G IP 
Sbjct: 126 SNNNFTGSIPR 136

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 62/277 (22%), Positives = 96/277 (34%), Gaps = 51/277 (18%)

Query: 56  VDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLL-------FSNSSFLYIL 108
           + L  N         +  ++     L  L +S N   G IP          +    L  L
Sbjct: 28  LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQEL 86

Query: 109 DMSNNSLSGSIPESIGSLR---TLRFLVLRNNYLSGE-LPL---SLKNCTF-MESLDLGD 160
           D+S+N+L       + SL    +L+ L L NN L    L L    LK+    +E L LG 
Sbjct: 87  DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR 146

Query: 161 NNLSGN--IPAWIGASMPGLLHILDLSHNDLSGFIPPRVG------------NLSDMKVE 206
           N L G               L  L+L++N +       +             +L++  + 
Sbjct: 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206

Query: 207 PPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTS-----LVHLGT 261
              +      L             +L  + +L+L   NL+    A L S      + L T
Sbjct: 207 DEGASALAETLA------------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254

Query: 262 LNLSHNHL----VGKIPEEIGNFEWLETLDLSKNKLS 294
           L+LS N +       + E +   E L  LDL  NK  
Sbjct: 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 81/277 (29%), Positives = 124/277 (44%), Gaps = 42/277 (15%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            + L   +  G   L   +++ NL  L +L ++ N L   I  L    + L  LD+ NN+
Sbjct: 69  LLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNN 127

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
           ++   P        L+ L L +N +   LP  L+N   +++LDL  N+LS         S
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186

Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
               L+ LDLS N +S  +PP +  LS ++                              
Sbjct: 187 N---LNNLDLSGNKISD-LPPEIELLSALEE----------------------------- 213

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
              LDLS+ N   E+ + L++L +L  L LS+N  +  +PE IGN   LETLDLS N++ 
Sbjct: 214 ---LDLSN-NSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQI- 267

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
            S   S+ SL  +  L+LS N+LS  +P       L 
Sbjct: 268 -SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317
           +L +L+LS+N L             L+ LDLS N L+   P + + L  +  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
PLN03150	623	hypothetical protein; Provisional	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
PLN03150	623	hypothetical protein; Provisional	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG4341	483	consensus F-box protein containing LRR [General fu	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
KOG4341	483	consensus F-box protein containing LRR [General fu	98.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.59
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.37
KOG4308	478	consensus LRR-containing protein [Function unknown	93.05
smart00370	26	LRR Leucine-rich repeats, outliers.	92.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.85
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.73
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.39
KOG4308	478	consensus LRR-containing protein [Function unknown	90.99
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.23
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	83.25

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.4e-34  Score=286.14  Aligned_cols=338  Identities=33%  Similarity=0.516  Sum_probs=217.8

Q ss_pred             CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcc
Q 041463            1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLK   79 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~   79 (356)
                      ++++|++|++++|.+.+..|..+.++ ++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.+    |..+..++
T Consensus       234 ~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~  308 (968)
T PLN00113        234 GLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI----PELVIQLQ  308 (968)
T ss_pred             cCCCCCEEECcCceeccccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC----ChhHcCCC
Confidence            35677778888777777777777766 677777777777766655555 4677777777777766533    34455566


Q ss_pred             cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCC--------
Q 041463           80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCT--------  151 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~--------  151 (356)
                      +|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++        
T Consensus       309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  388 (968)
T PLN00113        309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF  388 (968)
T ss_pred             CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence            666666666666655555666666666666666666555555555555666666665555544444444444        


Q ss_pred             ----------------CCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC
Q 041463          152 ----------------FMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG  215 (356)
Q Consensus       152 ----------------~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~  215 (356)
                                      +|+.|++++|.+.+..|..+.. ++. ++.+++++|.+.+..+..+..+++|+.+....+...+
T Consensus       389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCC-CCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence                            4444444444444333333222 221 4555555555444444444444444443332221111


Q ss_pred             Ce---------eee------ecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCC
Q 041463          216 RL---------RVV------TKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNF  280 (356)
Q Consensus       216 ~~---------~~~------~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~  280 (356)
                      ..         ...      ..+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+
T Consensus       467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  546 (968)
T PLN00113        467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM  546 (968)
T ss_pred             ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence            10         000      012223445667788888888888887788888888888888888888888888888888


Q ss_pred             CCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCccccCCC
Q 041463          281 EWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDP  346 (356)
Q Consensus       281 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  346 (356)
                      ++|+.|++++|++.+.+|..+.+++.|+.+++++|++.+.+|....+..+.... +.+|+..||.+
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~-~~~n~~lc~~~  611 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA-VAGNIDLCGGD  611 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh-hcCCccccCCc
Confidence            888888888888888888888888888888998888888888887777776665 77888888754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-33  Score=281.80  Aligned_cols=312  Identities=36%  Similarity=0.500  Sum_probs=142.9

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      +++|++|++++|.+++.+|..  .+ ++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.    +|..+..+++
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~~--~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~  189 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPRG--SI-PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTS  189 (968)
T ss_pred             CCCCCEEECcCCccccccCcc--cc-CCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc----CChhhhhCcC
Confidence            455666666666665544431  12 455555555555554444433 355555555555554432    2234444555


Q ss_pred             ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  160 (356)
                      |++|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus       190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  269 (968)
T PLN00113        190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ  269 (968)
T ss_pred             CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence            55555555555444444455555555555555554444444444555555555555554444444444455555555555


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCe-------------eee---ecCC
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRL-------------RVV---TKGS  224 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~-------------~~~---~~~~  224 (356)
                      |.+.+..|..+.. +.. |+.|++++|.+.+.+|..+..+++|+.+........+..             ...   ..+.
T Consensus       270 n~l~~~~p~~l~~-l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        270 NKLSGPIPPSIFS-LQK-LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             CeeeccCchhHhh-ccC-cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence            4444334333322 111 444444444444444444444444333222111110000             000   0011


Q ss_pred             ccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCc
Q 041463          225 ERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASL  304 (356)
Q Consensus       225 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l  304 (356)
                      .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  427 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL  427 (968)
T ss_pred             CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence            22233444555555555555544444444444444444444444444444444444555555555555544444444444


Q ss_pred             CCCCEEEcccCcccccCC
Q 041463          305 IFMNHLNLSYNNLSGEIP  322 (356)
Q Consensus       305 ~~L~~L~l~~n~~~~~~~  322 (356)
                      +.|+.|++++|.+++.+|
T Consensus       428 ~~L~~L~Ls~N~l~~~~~  445 (968)
T PLN00113        428 PLVYFLDISNNNLQGRIN  445 (968)
T ss_pred             CCCCEEECcCCcccCccC
Confidence            444444444444444433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=9e-32  Score=234.91  Aligned_cols=312  Identities=21%  Similarity=0.236  Sum_probs=158.5

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCC-CCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL   84 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L   84 (356)
                      ++|++++|.+.+..+..|.++ ++|+++++.+|.++ .+|.+.+ ..+|+.|+|..|.|...    -.+.+..++.|+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl-~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv----~se~L~~l~alrsl  154 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNL-PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSV----TSEELSALPALRSL  154 (873)
T ss_pred             eeeeccccccccCcHHHHhcC-Ccceeeeeccchhh-hcccccccccceeEEeeeccccccc----cHHHHHhHhhhhhh
Confidence            457777777766666656666 67777777777666 3444443 33455555555555421    12334444444444


Q ss_pred             ecccc------------------------cccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccc
Q 041463           85 VISNN------------------------NLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS  140 (356)
Q Consensus        85 ~l~~~------------------------~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  140 (356)
                      |++.|                        .|+......|..+.+|..|.++.|+++...+..|.++++|+.|++..|.+.
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            44444                        444344444444444444444444444333444444444444444444443


Q ss_pred             cccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeee
Q 041463          141 GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV  220 (356)
Q Consensus       141 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~  220 (356)
                      ....-.|.++++|+.|.+..|.+. .+.+..+..+.+ +++|++..|++...-..++..+++|+.+.......       
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~k-me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI-------  305 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEK-MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI-------  305 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecc-cceeecccchhhhhhcccccccchhhhhccchhhh-------
Confidence            111223344444444444444443 233333333333 66666666666544445555566555433322111       


Q ss_pred             ecCCccccccccccccEEeecCCcccccCchhhh------------------------cccccCeEEccCCcCcCCC---
Q 041463          221 TKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT------------------------SLVHLGTLNLSHNHLVGKI---  273 (356)
Q Consensus       221 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~------------------------~~~~L~~L~L~~n~i~~~~---  273 (356)
                       .......|+..++|+.|+|+.|.++...+..|.                        .+.+|++|+|+.|.+...+   
T Consensus       306 -~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  306 -QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             -heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence             111223344455555555555555544444444                        4455555555555543221   


Q ss_pred             CcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcc
Q 041463          274 PEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       274 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~  334 (356)
                      ...|.++++|+.|++.+|++..+.-..|.++++|++|||.+|.+..+-|.. ..+ .|+++.
T Consensus       385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            123455677777777777776555556777777777777777777666665 333 455544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=8.8e-32  Score=234.99  Aligned_cols=322  Identities=20%  Similarity=0.174  Sum_probs=229.5

Q ss_pred             eEEEcccccccccCCchHHhhc-cCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            6 RTLVLNKARISDTIPDWFWQLS-LTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      +.|+.++..+....-..+...+ +.-+.|++++|.+.......+ ++++|+++++.+|.++     .+|.......+++.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-----~IP~f~~~sghl~~  129 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-----RIPRFGHESGHLEK  129 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-----hcccccccccceeE
Confidence            4567777776532222222222 567889999999997666655 7999999999999988     35555555678999


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      |++.+|.|+.+..+.+..++.|+.||++.|.+..+....|..-.++++|++++|.+++..-..|..+.+|-.|.+++|.+
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            99999999988888899999999999999999966667788878999999999999987778899999999999999999


Q ss_pred             cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCc----cCCCeeeee------------cCCccc
Q 041463          164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ----HEGRLRVVT------------KGSERK  227 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~----~~~~~~~~~------------~~~~~~  227 (356)
                      + .+|...++.+++ |+.|++..|.+.-.--..+..+++|+.+.+....    ..+.+....            ......
T Consensus       210 t-tLp~r~Fk~L~~-L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  210 T-TLPQRSFKRLPK-LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             c-ccCHHHhhhcch-hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence            8 788777776776 9999999998763323455666666553332211    111111110            111223


Q ss_pred             cccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCC
Q 041463          228 YFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM  307 (356)
Q Consensus       228 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  307 (356)
                      ++-.++.|+.|++++|.|....+..++-.++|++|+|+.|.|+.-.+..|..+..|+.|.|++|.+...-...|..+++|
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL  367 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL  367 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence            34466778888888888877777777777888888888888875445566666666666666666665444556666666


Q ss_pred             CEEEcccCcccccCCCC----cccCcCCCcc
Q 041463          308 NHLNLSYNNLSGEIPNT----NQFQTLNDPS  334 (356)
Q Consensus       308 ~~L~l~~n~~~~~~~~~----~~l~~l~~~~  334 (356)
                      ++|||++|.++..+.+.    .++++|+.+.
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            66666666666655444    4556666555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=3.7e-28  Score=214.39  Aligned_cols=337  Identities=24%  Similarity=0.306  Sum_probs=209.6

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      |+++++|.|...++. .+|+.++.+ .+|++|.+.+|.+.....+.-.++.|+.+.+..|++...   -+|..+.++..|
T Consensus        31 Mt~~~WLkLnrt~L~-~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dL  105 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLE-QVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDL  105 (1255)
T ss_pred             hhheeEEEechhhhh-hChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC---CCCchhcccccc
Confidence            566777777777776 577777776 677777777777765555555677777777777766533   245566667777


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      +.|++++|.+. ..|..+..-+++-.|++++|.|..+....|.++.-|-+|++++|++. .+|+.+..+.+|++|++++|
T Consensus       106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCC
Confidence            77777777766 55666666667777777777776554455556666666777777666 56666666666666666666


Q ss_pred             cccccCCchhhcccccceeEEEcccCccc-ccCCCCcCCCCCCcccCCCCCc------------cCCCeeeeecC--Ccc
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLS-GFIPPRVGNLSDMKVEPPKSVQ------------HEGRLRVVTKG--SER  226 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~~~~~~~~------------~~~~~~~~~~~--~~~  226 (356)
                      .+.......+-. +. +|+.|.+++.+-+ ..+|.++..+.+|.........            ....+......  ...
T Consensus       184 PL~hfQLrQLPs-mt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~  261 (1255)
T KOG0444|consen  184 PLNHFQLRQLPS-MT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN  261 (1255)
T ss_pred             hhhHHHHhcCcc-ch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee
Confidence            553111111100 11 1444444443321 2344444444433321111000            00000000000  001


Q ss_pred             ccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcC-CCCcCcCCCCCccEEEccCCcccccCCccccCcC
Q 041463          227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI  305 (356)
Q Consensus       227 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~  305 (356)
                      ...+...+|+.|+++.|.++ .+|.+++.++.|+.|.+.+|+++- -+|..++.+.+|+.+..++|.+. ..|+.+..|+
T Consensus       262 ~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~  339 (1255)
T KOG0444|consen  262 MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV  339 (1255)
T ss_pred             ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH
Confidence            11233456677777777776 567777777777777777777542 36777777778888888877776 7888889999


Q ss_pred             CCCEEEcccCcccccCCCCcccCcCCCccccccCccccCCCCCCC
Q 041463          306 FMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKK  350 (356)
Q Consensus       306 ~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  350 (356)
                      .|+.|.|++|++-+.+..+--++.|+.++ .+.|+.+-..|-.-|
T Consensus       340 kL~kL~L~~NrLiTLPeaIHlL~~l~vLD-lreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  340 KLQKLKLDHNRLITLPEAIHLLPDLKVLD-LRENPNLVMPPKPND  383 (1255)
T ss_pred             HHHHhcccccceeechhhhhhcCCcceee-ccCCcCccCCCCcch
Confidence            99999999999987777778889999999 888988776665544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=6e-28  Score=213.13  Aligned_cols=328  Identities=26%  Similarity=0.312  Sum_probs=254.4

Q ss_pred             ccceEEEccccccc-ccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            3 TELRTLVLNKARIS-DTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         3 ~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      +=+|-+++++|.++ +.+|.....+ .+++.|.|....+. .+|+.+ .+.+|++|.+..|++.     .+...+..+|.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~   79 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPR   79 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchh
Confidence            44677899999998 5689888888 89999999998887 566666 6999999999999987     45567888999


Q ss_pred             ccEEecccccccc-cccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463           81 LITLVISNNNLSG-EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG  159 (356)
Q Consensus        81 L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  159 (356)
                      ||.+.+..|.+.. -+|..+..+..|+.||+++|.+. ..|..+..-+++-.|.+++|.+..+.-..+.++..|-.||++
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            9999999998853 36777888999999999999999 888888888999999999999984444456789999999999


Q ss_pred             CCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEe
Q 041463          160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD  239 (356)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  239 (356)
                      +|.+. .+|..+.....  |++|.+++|++.-.--..+.++++|..+.+...+..       ....+..+..+.+|..+|
T Consensus       159 ~NrLe-~LPPQ~RRL~~--LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-------l~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  159 NNRLE-MLPPQIRRLSM--LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-------LDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             cchhh-hcCHHHHHHhh--hhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-------hhcCCCchhhhhhhhhcc
Confidence            99997 88888776544  999999999865332233344455544333322111       112345567788999999


Q ss_pred             ecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      ++.|.+. ..|..+-.+++|+.|+|++|.|+ .+.-......+|+.|+++.|+++ ..|+.+.++++|+.|.+.+|+++-
T Consensus       229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  229 LSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             ccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence            9999998 78888888999999999999998 55555566778999999999999 889999999999999999998874


Q ss_pred             c-CCCC-cccCcCCCccccccCccccCCC-CCCCCCC
Q 041463          320 E-IPNT-NQFQTLNDPSIYEGNLALCGDP-LPKKCPE  353 (356)
Q Consensus       320 ~-~~~~-~~l~~l~~~~~~~~~~~~~~~~-~~~~c~~  353 (356)
                      . +|+. ..+..|.++. ..+|..- -.| .-|-|++
T Consensus       306 eGiPSGIGKL~~Levf~-aanN~LE-lVPEglcRC~k  340 (1255)
T KOG0444|consen  306 EGIPSGIGKLIQLEVFH-AANNKLE-LVPEGLCRCVK  340 (1255)
T ss_pred             cCCccchhhhhhhHHHH-hhccccc-cCchhhhhhHH
Confidence            3 5554 7777777665 3333222 233 4477753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=1.6e-26  Score=193.80  Aligned_cols=310  Identities=27%  Similarity=0.374  Sum_probs=190.2

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcc-cCCccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKS-IGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~l~~   80 (356)
                      |+.|++|+...|.++ .+|..++.+ .+|+-|+++.|++. ..|++-++..|+++.++.|.+.     .+|.. ..+++.
T Consensus       182 m~~L~~ld~~~N~L~-tlP~~lg~l-~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-----~lpae~~~~L~~  253 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLE-TLPPELGGL-ESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-----MLPAEHLKHLNS  253 (565)
T ss_pred             HHHHHhcccchhhhh-cCChhhcch-hhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-----hhHHHHhccccc
Confidence            445555555555554 455555555 55666666666655 4455555666666666666554     23332 335666


Q ss_pred             ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccc------------------
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE------------------  142 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~------------------  142 (356)
                      +.+||++.|.+. ..|..+..+.+|.+||+++|.++ ..|..++++ +|++|.+.+|.+.+.                  
T Consensus       254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             ceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            667777777666 55666666666777777777666 555566666 677777766654310                  


Q ss_pred             --------------------cC---ccccCCCCCcEEEecCCcccccCCchhhcccc-cceeEEEcccCcccccCCCCcC
Q 041463          143 --------------------LP---LSLKNCTFMESLDLGDNNLSGNIPAWIGASMP-GLLHILDLSHNDLSGFIPPRVG  198 (356)
Q Consensus       143 --------------------~~---~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~  198 (356)
                                          .+   .......+.+.|++++-+++ ..|..++.... ..++..++++|++. .+|..+.
T Consensus       331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~  408 (565)
T KOG0472|consen  331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV  408 (565)
T ss_pred             hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH
Confidence                                00   01112234555666665555 44544433322 23677788888775 5666665


Q ss_pred             CCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcC
Q 041463          199 NLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIG  278 (356)
Q Consensus       199 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  278 (356)
                      .+..+..+.......        .+-.+..+..+++|..|+|++|.+. ..|..+..+..|+.|+++.|.+. .+|..+.
T Consensus       409 ~lkelvT~l~lsnn~--------isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y  478 (565)
T KOG0472|consen  409 ELKELVTDLVLSNNK--------ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY  478 (565)
T ss_pred             HHHHHHHHHHhhcCc--------cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh
Confidence            555544322111111        1112445667888899999999887 67888888888999999999776 6777666


Q ss_pred             CCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463          279 NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       279 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      ....++.+-.++|++....++.+..+.+|..||+.+|.+..++|-+..+++|+++.
T Consensus       479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLe  534 (565)
T KOG0472|consen  479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLE  534 (565)
T ss_pred             hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEE
Confidence            66667777666677775555556677777777777777777777777777777665

>PLN03210 Resistant to P

Probab=99.89  E-value=2.3e-21  Score=194.99  Aligned_cols=316  Identities=19%  Similarity=0.188  Sum_probs=199.0

Q ss_pred             CcccceEEEccccc------ccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcc
Q 041463            1 NQTELRTLVLNKAR------ISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKS   74 (356)
Q Consensus         1 ~l~~L~~L~l~~~~------i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~   74 (356)
                      +|++|+.|.+..+.      +...+|..+..+.++|+.|.+.++.+. ..|..+...+|++|+++++.+.     .++..
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-----~L~~~  629 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-----KLWDG  629 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-----ccccc
Confidence            36778888886543      223466677766567999999998887 6677778899999999999876     35567


Q ss_pred             cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463           75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME  154 (356)
Q Consensus        75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  154 (356)
                      +..+++|+.++++++.....+|. +..+++|++|++++|......|..+.++++|++|++++|.....+|..+ .+++|+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            78899999999998764435554 7788999999999987666788888899999999999986544667655 688999


Q ss_pred             EEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccccc
Q 041463          155 SLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL  234 (356)
Q Consensus       155 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (356)
                      .|++++|.....+|..     ...++.|+++++.+. .+|..+ .+++|..+....+.... +...............++
T Consensus       708 ~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI-----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             EEeCCCCCCccccccc-----cCCcCeeecCCCccc-cccccc-cccccccccccccchhh-ccccccccchhhhhcccc
Confidence            9999998654455532     234899999998876 445433 34444432222111000 000000000011112344


Q ss_pred             ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCC---------------------CCccEEEccCCcc
Q 041463          235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNF---------------------EWLETLDLSKNKL  293 (356)
Q Consensus       235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~---------------------~~L~~L~L~~n~i  293 (356)
                      |+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+                     ++|+.|+|++|.+
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI  858 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence            5555555554443445555555555555555543222333322 22                     4566666666666


Q ss_pred             cccCCccccCcCCCCEEEcccCcc-cccCCCCcccCcCCCcc
Q 041463          294 SGSIPPSMASLIFMNHLNLSYNNL-SGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       294 ~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~l~~l~~~~  334 (356)
                      + .+|..+..+++|+.|++++|+- ....+....++.|+.++
T Consensus       859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            6 5666677777888888877543 33334446666666655

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.2e-24  Score=182.12  Aligned_cols=293  Identities=22%  Similarity=0.263  Sum_probs=187.4

Q ss_pred             cCCcEeeccCCccCCcCCCCCC-CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccc-ccccccccccccCCCCC
Q 041463           28 LTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFL  105 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L  105 (356)
                      +.-.++.|..|.|+...+.+|+ +++|+.|+|+.|.|+.    +.|.+|.+++.+..|.+.+ |.|+......|.++..|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~----I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF----IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhh----cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            5677788888888877777774 7888888888887764    3457777888777766555 77776666778888888


Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc-ccCCchhhcccccceeEEEc
Q 041463          106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS-GNIPAWIGASMPGLLHILDL  184 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~L~~L~l  184 (356)
                      +.|.+..|++.-.....|..++++..|.+.+|.+....-..+..+..++.+++..|.+. +....+......  ......
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a--~~~iet  220 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA--MNPIET  220 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh--hchhhc
Confidence            88888887777666677777888888888888776333346777777787777776632 111111111000  000011


Q ss_pred             ccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccc-cEEeecCCccccc-CchhhhcccccCeE
Q 041463          185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV-NLLDLSSTNLSAE-IPAELTSLVHLGTL  262 (356)
Q Consensus       185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~L~~~~l~~~-~~~~~~~~~~L~~L  262 (356)
                      ++-..  ..|..      +..         .+......   ..+......+ ..+. +.+...++ ....|..+++|++|
T Consensus       221 sgarc--~~p~r------l~~---------~Ri~q~~a---~kf~c~~esl~s~~~-~~d~~d~~cP~~cf~~L~~L~~l  279 (498)
T KOG4237|consen  221 SGARC--VSPYR------LYY---------KRINQEDA---RKFLCSLESLPSRLS-SEDFPDSICPAKCFKKLPNLRKL  279 (498)
T ss_pred             cccee--cchHH------HHH---------HHhcccch---hhhhhhHHhHHHhhc-cccCcCCcChHHHHhhcccceEe
Confidence            11000  00000      000         00000000   0000011111 1111 12222223 33568999999999


Q ss_pred             EccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCccc
Q 041463          263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLAL  342 (356)
Q Consensus       263 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~  342 (356)
                      +|++|+|+++.+.+|.++..++.|.|..|++...-..+|.++..|+.|+|.+|+|+.+.|-.  |+.+..    .+.+.+
T Consensus       280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--F~~~~~----l~~l~l  353 (498)
T KOG4237|consen  280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--FQTLFS----LSTLNL  353 (498)
T ss_pred             ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--ccccce----eeeeeh
Confidence            99999999888889999999999999999999777778999999999999999999988876  333332    234556


Q ss_pred             cCCCCCCCCCC
Q 041463          343 CGDPLPKKCPE  353 (356)
Q Consensus       343 ~~~~~~~~c~~  353 (356)
                      -+|||.|||.-
T Consensus       354 ~~Np~~CnC~l  364 (498)
T KOG4237|consen  354 LSNPFNCNCRL  364 (498)
T ss_pred             ccCcccCccch
Confidence            78999999973

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=2e-25  Score=187.32  Aligned_cols=263  Identities=30%  Similarity=0.429  Sum_probs=204.1

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      -.++.+.++.|.+....++..++..+.+|++.+|+..     .+|.++..+..++.+++++|.+. ..|+.+.....|..
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-----~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~  118 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-----QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK  118 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhh-----hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence            4688999999999877777778999999999999987     56788889999999999999998 88899999999999


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      ++++.|++. ..+..+..+..++.++..+|.++ ..|..+..+.++..+++.+|.+. ..|+.... +.. +++++...|
T Consensus       119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~-L~~ld~~~N  193 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKR-LKHLDCNSN  193 (565)
T ss_pred             hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHH-HHhcccchh
Confidence            999999998 67777888889999999999998 78999999999999999999998 55555444 433 999999888


Q ss_pred             cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463          188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN  267 (356)
Q Consensus       188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n  267 (356)
                      .++ .+|+.++.+++|..                                |+|..|++. ..| .|+++..|++|.+..|
T Consensus       194 ~L~-tlP~~lg~l~~L~~--------------------------------LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N  238 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLEL--------------------------------LYLRRNKIR-FLP-EFPGCSLLKELHVGEN  238 (565)
T ss_pred             hhh-cCChhhcchhhhHH--------------------------------HHhhhcccc-cCC-CCCccHHHHHHHhccc
Confidence            776 78888888877765                                666666665 344 5666666667766666


Q ss_pred             cCcCCCCcC-cCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCc
Q 041463          268 HLVGKIPEE-IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNL  340 (356)
Q Consensus       268 ~i~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~  340 (356)
                      .|. .+|.. ..+++++..||+.+|+++ +.|+.+.-+.+|..||+++|.+++.++.++.+ -|+++. ..|||
T Consensus       239 ~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~-leGNP  308 (565)
T KOG0472|consen  239 QIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA-LEGNP  308 (565)
T ss_pred             HHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh-hcCCc
Confidence            666 44433 336666667777777766 56666666666666777777776666666666 455555 44443

>PLN03210 Resistant to P

Probab=99.85  E-value=7.9e-20  Score=183.92  Aligned_cols=290  Identities=21%  Similarity=0.191  Sum_probs=205.0

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      +||.|.+.++.+. .+|..+. . .+|++|++.++.+.........+++|+.|+++++.....+|     .+..+++|+.
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f~-~-~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~  661 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNFR-P-ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLET  661 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcCC-c-cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-----ccccCCcccE
Confidence            5888888888876 5666663 3 68889999888887443334468888999998775443333     3666888888


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      |++.+|.....+|..+..+++|+.|++++|......|..+ ++++|++|.+++|.....+|..   ..+|+.|++++|.+
T Consensus       662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i  737 (1153)
T PLN03210        662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI  737 (1153)
T ss_pred             EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence            8888886555777888888888888888876444555544 6778888888887554344432   34667777777665


Q ss_pred             cccCCchh----------------------------hcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC
Q 041463          164 SGNIPAWI----------------------------GASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG  215 (356)
Q Consensus       164 ~~~~~~~~----------------------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~  215 (356)
                      . .+|..+                            ....+..|+.|++++|.....+|..++.+++|+.+....+....
T Consensus       738 ~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        738 E-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             c-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence            4 333221                            01122348888888887666788888888888886665544333


Q ss_pred             CeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccc
Q 041463          216 RLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG  295 (356)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~  295 (356)
                      .++.        . ..+++|+.|++++|......|..   ..+|++|++++|.++ .+|.++..+++|+.|++++|.-..
T Consensus       817 ~LP~--------~-~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        817 TLPT--------G-INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             eeCC--------C-CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence            2211        1 15788999999998654444432   368999999999998 788899999999999999985444


Q ss_pred             cCCccccCcCCCCEEEcccCcccc
Q 041463          296 SIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       296 ~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      .+|..+..+++|+.+++++|.-..
T Consensus       884 ~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        884 RVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             ccCcccccccCCCeeecCCCcccc
Confidence            677778889999999999996543

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.84  E-value=6.8e-23  Score=188.40  Aligned_cols=227  Identities=30%  Similarity=0.385  Sum_probs=139.3

Q ss_pred             CCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEE
Q 041463          103 SFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL  182 (356)
Q Consensus       103 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L  182 (356)
                      .+|++++++.+.+. ..|.++..+.+|+.+.+..|.++ .+|..+....+|+.|.+..|.+. .+|.......  .+++|
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~--sL~tL  315 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLK--SLRTL  315 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccc--eeeee
Confidence            46777777777777 45566677777777777777765 44555555555555555555543 3333322111  15555


Q ss_pred             EcccCcccccCCCCcCCCCC--CcccCC-------------CCCccCCCeeeee---cCCccccccccccccEEeecCCc
Q 041463          183 DLSHNDLSGFIPPRVGNLSD--MKVEPP-------------KSVQHEGRLRVVT---KGSERKYFTTLYLVNLLDLSSTN  244 (356)
Q Consensus       183 ~l~~~~l~~~~~~~~~~l~~--L~~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~  244 (356)
                      ++..|.+.. +|..+.....  +.....             ........+....   .......+.++.+|+.|+|++|+
T Consensus       316 dL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  316 DLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            555554432 2211100000  000000             0000000000000   11112234577899999999999


Q ss_pred             ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc-CCC
Q 041463          245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE-IPN  323 (356)
Q Consensus       245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~  323 (356)
                      +.......+.+++.|++|+|+||.++ .+|+.+..++.|+.|...+|++. .+| .+.+++.|+.+|++.|+++.. +|.
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence            98666677888999999999999998 78888888999999999999998 677 688899999999999998854 444


Q ss_pred             CcccCcCCCccccccC
Q 041463          324 TNQFQTLNDPSIYEGN  339 (356)
Q Consensus       324 ~~~l~~l~~~~~~~~~  339 (356)
                      ....+.|++++ +.||
T Consensus       472 ~~p~p~LkyLd-lSGN  486 (1081)
T KOG0618|consen  472 ALPSPNLKYLD-LSGN  486 (1081)
T ss_pred             hCCCcccceee-ccCC
Confidence            44447888877 4444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=1e-19  Score=171.50  Aligned_cols=261  Identities=26%  Similarity=0.293  Sum_probs=191.6

Q ss_pred             ceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463            5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL   84 (356)
Q Consensus         5 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L   84 (356)
                      -..|+++.+.++ .+|..+.   ++|+.|++.+|.++. +|.  ..++|++|++++|.++.     +|..   .++|+.|
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lts-----LP~l---p~sL~~L  267 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-----LPVL---PPGLLEL  267 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCc-----ccCc---cccccee
Confidence            457899999998 5777665   589999999999984 443  25899999999999882     3322   4688999


Q ss_pred             ecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463           85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus        85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      ++.+|.+. .+|..   ..+|+.|++++|.+. ..|.   .+++|++|++++|.++ .+|..   ...|+.|++++|.+.
T Consensus       268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCC---cccccccccccCccc
Confidence            99999887 44442   367889999999988 4443   2468999999999998 44432   246888999999887


Q ss_pred             ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc
Q 041463          165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  244 (356)
                       .+|.     .+..|+.|++++|.+.. +|.....+..|..   ..... ..+        +   ....+|+.|++++|.
T Consensus       336 -~LP~-----lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~L---s~N~L-~~L--------P---~l~~~L~~LdLs~N~  393 (788)
T PRK15387        336 -SLPT-----LPSGLQELSVSDNQLAS-LPTLPSELYKLWA---YNNRL-TSL--------P---ALPSGLKELIVSGNR  393 (788)
T ss_pred             -cccc-----cccccceEecCCCccCC-CCCCCcccceehh---hcccc-ccC--------c---ccccccceEEecCCc
Confidence             4553     23349999999999873 4544434433321   11110 011        0   113478999999999


Q ss_pred             ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC
Q 041463          245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN  323 (356)
Q Consensus       245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  323 (356)
                      +.+ .|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       394 Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        394 LTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            984 4432   367999999999998 56654   357899999999999 7888899999999999999999987555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=1.5e-18  Score=164.40  Aligned_cols=246  Identities=26%  Similarity=0.422  Sum_probs=166.8

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      +.+.|+++++.++ .+|..+.   ++++.|++++|.++.. |..+ ..+|++|++++|.++ .+    |..+  .++|+.
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsL-P~~l-~~nL~~L~Ls~N~Lt-sL----P~~l--~~~L~~  245 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKSL-PENL-QGNIKTLYANSNQLT-SI----PATL--PDTIQE  245 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcC-Chhh-ccCCCEEECCCCccc-cC----Chhh--hccccE
Confidence            4567888887777 4565443   5788888888888743 3322 257888888888776 33    3333  246788


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      |++++|.+. .+|..+.  .+|++|++++|.+. ..|..+.  ++|++|++++|.++ .+|..+.  ++|+.|++++|.+
T Consensus       246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L  316 (754)
T PRK15370        246 MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL  316 (754)
T ss_pred             EECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc
Confidence            888888877 4555443  47888888888877 4454443  47888888888877 4454332  4677888888877


Q ss_pred             cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463          164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST  243 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  243 (356)
                      . .+|..+    +..|+.|++++|.+.. +|..+                                  .++|+.|++++|
T Consensus       317 t-~LP~~l----~~sL~~L~Ls~N~Lt~-LP~~l----------------------------------~~sL~~L~Ls~N  356 (754)
T PRK15370        317 T-ALPETL----PPGLKTLEAGENALTS-LPASL----------------------------------PPELQVLDVSKN  356 (754)
T ss_pred             c-cCCccc----cccceeccccCCcccc-CChhh----------------------------------cCcccEEECCCC
Confidence            6 344332    2347888888777653 33211                                  135777999999


Q ss_pred             cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccc----cCcCCCCEEEcccCccc
Q 041463          244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM----ASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~~~  318 (356)
                      .+. .+|..+.  +.|++|++++|.++ .+|..+.  .+|+.|++++|+++ .+|..+    ..++.+..+++.+|+++
T Consensus       357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        357 QIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            887 4555553  68999999999988 5666553  36899999999988 555433    34578889999999986

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=1.1e-20  Score=165.93  Aligned_cols=157  Identities=23%  Similarity=0.225  Sum_probs=90.8

Q ss_pred             EEEccccccccc-CCchHHhhccCCcEeeccCCccCCc----CCCCC-CCCCCcEEecCCCcccC--cCCCCCCcccCCc
Q 041463            7 TLVLNKARISDT-IPDWFWQLSLTLDELDVAYNELRGR----VPNSL-GFNFPATVDLSSNNFEG--RLPLCIPKSIGNL   78 (356)
Q Consensus         7 ~L~l~~~~i~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~-~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~l   78 (356)
                      +|+|..+.+++. ....+..+ .+|++|++.++.++..    ++..+ ..+.+++++++++.+.+  .....++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKL-LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHH-hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            577788877743 33334444 7899999999887532    22222 45678888888876652  1101122345556


Q ss_pred             ccccEEecccccccccccccccCCCC---CcEEEcccCcccc----cccccccCC-CCCcEEEeeccccccc----cCcc
Q 041463           79 KQLITLVISNNNLSGEIPLLFSNSSF---LYILDMSNNSLSG----SIPESIGSL-RTLRFLVLRNNYLSGE----LPLS  146 (356)
Q Consensus        79 ~~L~~L~l~~~~i~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~l~~~----~~~~  146 (356)
                      ++|+.|++++|.+....+..+..+..   |++|++++|.+.+    .....+..+ ++|+.|++++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            67777777777765444444444433   7777777776652    112233344 6677777777666521    2233


Q ss_pred             ccCCCCCcEEEecCCccc
Q 041463          147 LKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       147 l~~l~~L~~L~l~~~~l~  164 (356)
                      +..+++|++|++++|.+.
T Consensus       161 ~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         161 LRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHhCCCcCEEECcCCCCc
Confidence            445556666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.76  E-value=5.9e-21  Score=160.25  Aligned_cols=290  Identities=19%  Similarity=0.196  Sum_probs=201.8

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCC-CcccCcCCCCCCcccCCcccc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSS-NNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      .-+.++|+.|+|+...+.+|..+ ++|+.|+|++|.|+.+.+.+| ++..+.+|-+.+ |+|+ .+|.   ..|..+..+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l-~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k---~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTL-HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK---GAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChhhccch-hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh---hHhhhHHHH
Confidence            35688999999996666666666 999999999999999999988 588877777766 8887 3332   578889999


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      +.|.+.-|.+.......|..+++|..|.+-.|.+..+.-..|..+..++.+.+..|.+..     ..+++.+..... -+
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a-~~  216 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLA-MN  216 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHh-hc
Confidence            999999999987788899999999999999999885555688889999999888776421     112222211110 01


Q ss_pred             cccccCCchhhcccccceeEEEcccCcccccCCCCcCC-CCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGN-LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      .+...   ++..     .....+.+.++....+..+.. ++++..       ....-...+..-....|..+++|++|+|
T Consensus       217 ~iets---garc-----~~p~rl~~~Ri~q~~a~kf~c~~esl~s-------~~~~~d~~d~~cP~~cf~~L~~L~~lnl  281 (498)
T KOG4237|consen  217 PIETS---GARC-----VSPYRLYYKRINQEDARKFLCSLESLPS-------RLSSEDFPDSICPAKCFKKLPNLRKLNL  281 (498)
T ss_pred             hhhcc---ccee-----cchHHHHHHHhcccchhhhhhhHHhHHH-------hhccccCcCCcChHHHHhhcccceEecc
Confidence            10000   0000     111111111111110000000 000000       0000000011112234788999999999


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      ++|.++.+...+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|..+..|.+|++-.|++..
T Consensus       282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence            9999999999999999999999999999985555688999999999999999998889999999999999999888864

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.74  E-value=6.7e-20  Score=168.95  Aligned_cols=269  Identities=25%  Similarity=0.318  Sum_probs=186.4

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      ++++.|+.++|.++...+. +..  .+|++++++++.++. +|+.+ .+.+|+.++...|.++     .+|..+.....|
T Consensus       219 ~~l~~L~a~~n~l~~~~~~-p~p--~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-----~lp~ri~~~~~L  289 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH-PVP--LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-----ALPLRISRITSL  289 (1081)
T ss_pred             cchheeeeccCcceeeccc-ccc--ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-----hhHHHHhhhhhH
Confidence            5678888888888733322 222  578999999998884 44666 5899999999999886     456777788889


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCC-CCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR-TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  160 (356)
                      +.|.+..|.+. .+|......+.|++|++..|.+....+..+.-.. .++.+..+.+++.......=...+.|+.|++.+
T Consensus       290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            99999999887 6677777788999999999988743333333222 366677777776522222223456788888888


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      |.+++.....+.....  |+.|++++|++.......                                +.+++.|+.|+|
T Consensus       369 N~Ltd~c~p~l~~~~h--LKVLhLsyNrL~~fpas~--------------------------------~~kle~LeeL~L  414 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKH--LKVLHLSYNRLNSFPASK--------------------------------LRKLEELEELNL  414 (1081)
T ss_pred             Ccccccchhhhccccc--eeeeeecccccccCCHHH--------------------------------HhchHHhHHHhc
Confidence            8887665555444332  888888888776332222                                334455666888


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      +||+++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|+++.........-++|++||+++|.-.
T Consensus       415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            888887 56677777888888888888887 677 6677888888888888887442222222278888888888753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=3.7e-17  Score=155.11  Aligned_cols=227  Identities=26%  Similarity=0.406  Sum_probs=155.8

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      .+..+|++.++.++. +|..+ .+.|+.|++++|.++ .    +|..+  .++|++|++++|.+. .+|..+  ..+|+.
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I-p~~L~~L~Ls~N~Lt-s----LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~  245 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI-PEQITTLILDNNELK-S----LPENL--QGNIKTLYANSNQLT-SIPATL--PDTIQE  245 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc-ccCCcEEEecCCCCC-c----CChhh--ccCCCEEECCCCccc-cCChhh--hccccE
Confidence            456778888877773 34322 257888888888776 2    33333  257888888888776 445443  246888


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      |++++|.+. ..|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+    +..++.|++++|
T Consensus       246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l----p~sL~~L~Ls~N  314 (754)
T PRK15370        246 MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL----PSGITHLNVQSN  314 (754)
T ss_pred             EECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc----hhhHHHHHhcCC
Confidence            888888877 4454443  46888888888877 4565443  47888888888776 444332    223777777777


Q ss_pred             cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463          188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN  267 (356)
Q Consensus       188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n  267 (356)
                      .+.. +|..+                                  .++|+.|++++|.++. +|..+.  ++|+.|++++|
T Consensus       315 ~Lt~-LP~~l----------------------------------~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N  356 (754)
T PRK15370        315 SLTA-LPETL----------------------------------PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN  356 (754)
T ss_pred             cccc-CCccc----------------------------------cccceeccccCCcccc-CChhhc--CcccEEECCCC
Confidence            6652 22111                                  1357779999999885 555553  68999999999


Q ss_pred             cCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463          268 HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI  321 (356)
Q Consensus       268 ~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  321 (356)
                      .+. .+|..+.  ++|+.|++++|+++ .+|..+.  ..|+.|++++|++...+
T Consensus       357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP  404 (754)
T PRK15370        357 QIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLP  404 (754)
T ss_pred             CCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCc
Confidence            998 6776553  68999999999999 5565443  36999999999998543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=1.5e-16  Score=150.35  Aligned_cols=251  Identities=25%  Similarity=0.263  Sum_probs=174.9

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      ..-..|+++.+.++ .+|..+. .+|+.|++.+|.++.     +|.   ..++|++|++++|.++ .+|..   .++|+.
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~-~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLE  266 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh-cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccC-cccCc---ccccce
Confidence            45678999999998 4555443 589999999999882     333   2578999999999998 44542   468999


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      |++++|.+. ..|..   +.+|+.|.+++|.++ .+|.   ..++|+.|++++|.+. .+|..     +..++.|++++|
T Consensus       267 L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~l-----p~~L~~L~Ls~N  332 (788)
T PRK15387        267 LSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPAL-----PSELCKLWAYNN  332 (788)
T ss_pred             eeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCC-----cccccccccccC
Confidence            999999887 44432   357889999999998 5554   2468999999999987 44432     234889999999


Q ss_pred             cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463          188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN  267 (356)
Q Consensus       188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n  267 (356)
                      .+.. +|....   +|+.+........ .+        +   ....+|+.|++++|.+.. +|..   ..+|+.|++++|
T Consensus       333 ~L~~-LP~lp~---~Lq~LdLS~N~Ls-~L--------P---~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N  392 (788)
T PRK15387        333 QLTS-LPTLPS---GLQELSVSDNQLA-SL--------P---TLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGN  392 (788)
T ss_pred             cccc-cccccc---ccceEecCCCccC-CC--------C---CCCcccceehhhcccccc-Cccc---ccccceEEecCC
Confidence            8863 443222   2333222221111 01        0   012467778888888874 4432   257899999999


Q ss_pred             cCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463          268 HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       268 ~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      .++ .+|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+++..+..+..++.|..++
T Consensus       393 ~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        393 RLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVN  451 (788)
T ss_pred             ccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCcccccChHHhhccCCCeEE
Confidence            988 45543   357999999999998 466533   468889999999986554557777777666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=7.2e-19  Score=154.40  Aligned_cols=261  Identities=24%  Similarity=0.224  Sum_probs=174.1

Q ss_pred             EeeccCCccCCc-CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccc------cccccccCCC
Q 041463           32 ELDVAYNELRGR-VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG------EIPLLFSNSS  103 (356)
Q Consensus        32 ~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~------~~~~~~~~l~  103 (356)
                      .|+|..+.+.+. ....+ .+..|+.++++++.++......++..+...+.+++++++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            466666666532 22222 367799999999988543222344566677889999999887752      2334567788


Q ss_pred             CCcEEEcccCcccccccccccCCC---CCcEEEeecccccc----ccCccccCC-CCCcEEEecCCcccccCCchhhccc
Q 041463          104 FLYILDMSNNSLSGSIPESIGSLR---TLRFLVLRNNYLSG----ELPLSLKNC-TFMESLDLGDNNLSGNIPAWIGASM  175 (356)
Q Consensus       104 ~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~l~~----~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~  175 (356)
                      +|++|++++|.+....+..+..+.   +|++|++++|.+++    .+...+..+ ++|+.|++++|.+.+.....+...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            999999999988755555444444   49999999998863    223345566 8899999999988743222222222


Q ss_pred             c--cceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccC----
Q 041463          176 P--GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI----  249 (356)
Q Consensus       176 ~--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~----  249 (356)
                      .  ..++.|++++|.+.+.....                            ....+...++|+.|++++|.+.+..    
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~----------------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  213 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRA----------------------------LAEGLKANCNLEVLDLNNNGLTDEGASAL  213 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHH----------------------------HHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence            1  23899999988765311000                            0111234467888999999887433    


Q ss_pred             chhhhcccccCeEEccCCcCcCCCCcCcC-----CCCCccEEEccCCccccc----CCccccCcCCCCEEEcccCccccc
Q 041463          250 PAELTSLVHLGTLNLSHNHLVGKIPEEIG-----NFEWLETLDLSKNKLSGS----IPPSMASLIFMNHLNLSYNNLSGE  320 (356)
Q Consensus       250 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~  320 (356)
                      ...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.+++.    +...+..+++|+++++++|++...
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            33456678899999999988753222221     247899999999998732    334455668899999999999854

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=8.6e-19  Score=131.19  Aligned_cols=163  Identities=31%  Similarity=0.440  Sum_probs=103.1

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      ++++.|.+++|.++...|..-.+.+|+.|++.+|++.     .+|..+.++++|+.|+++-|.+. ..|.+|+.++.|+.
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4566666666666644444435666666666666665     34456666677777777666665 66666777777777


Q ss_pred             EEcccCccc-ccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEccc
Q 041463          108 LDMSNNSLS-GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSH  186 (356)
Q Consensus       108 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~  186 (356)
                      ||++.|.+. ...|..|..+..|+.|.+++|.+. .+|..++.+++|+.|.+.+|.+. .+|..++....  ++.|++.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~--lrelhiqg  182 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR--LRELHIQG  182 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH--HHHHhccc
Confidence            777666654 245666666666777777777666 66666777777777777766655 56666655333  67777777


Q ss_pred             CcccccCCCCcCCCC
Q 041463          187 NDLSGFIPPRVGNLS  201 (356)
Q Consensus       187 ~~l~~~~~~~~~~l~  201 (356)
                      |+++ .+|+.++.+.
T Consensus       183 nrl~-vlppel~~l~  196 (264)
T KOG0617|consen  183 NRLT-VLPPELANLD  196 (264)
T ss_pred             ceee-ecChhhhhhh
Confidence            7665 4555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3e-18  Score=128.28  Aligned_cols=165  Identities=29%  Similarity=0.481  Sum_probs=111.8

Q ss_pred             CCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhccccccee
Q 041463          101 NSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH  180 (356)
Q Consensus       101 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~  180 (356)
                      .+.+++.|.+++|+++ ..|..++.+.+|+.|.+++|++. .+|..++.+++|+.|++.-|.+. ..             
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~l-------------   94 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-IL-------------   94 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cC-------------
Confidence            4555666666666666 45555566666666666666665 55666666666666655544443 22             


Q ss_pred             EEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccc-cCchhhhccccc
Q 041463          181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSA-EIPAELTSLVHL  259 (356)
Q Consensus       181 ~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L  259 (356)
                                   |..++                                .++.|+.|||++|.+.. ..|..|..+..|
T Consensus        95 -------------prgfg--------------------------------s~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   95 -------------PRGFG--------------------------------SFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             -------------ccccC--------------------------------CCchhhhhhccccccccccCCcchhHHHHH
Confidence                         33332                                33334446666666553 356667777888


Q ss_pred             CeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccC
Q 041463          260 GTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ  328 (356)
Q Consensus       260 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~  328 (356)
                      +.|.+.+|.+. .+|..++.+.+|+.|.+..|.+. +.|..++.+.+|++|++.+|+++..+|.+..+.
T Consensus       130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~  196 (264)
T KOG0617|consen  130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD  196 (264)
T ss_pred             HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence            88888888887 78888888888888888888887 788888888888888888888888888875554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=1.4e-13  Score=114.56  Aligned_cols=188  Identities=23%  Similarity=0.265  Sum_probs=121.8

Q ss_pred             cccceEEEcccccccccCCchHHhhc---cCCcEeeccCC---ccCCcCCCCC--------CCCCCcEEecCCCcccCcC
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLS---LTLDELDVAYN---ELRGRVPNSL--------GFNFPATVDLSSNNFEGRL   67 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~---~~L~~L~l~~~---~~~~~~~~~~--------~~~~L~~L~l~~n~~~~~~   67 (356)
                      +..++.++|++|.+......++++.+   ++|++.++++=   .....+++.+        ++++|++|+||+|.+...+
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            56788999999999755455554443   56777777652   1112233322        5779999999999887655


Q ss_pred             CCCCCcccCCcccccEEecccccccccc-------------cccccCCCCCcEEEcccCccccc----ccccccCCCCCc
Q 041463           68 PLCIPKSIGNLKQLITLVISNNNLSGEI-------------PLLFSNSSFLYILDMSNNSLSGS----IPESIGSLRTLR  130 (356)
Q Consensus        68 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~-------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~  130 (356)
                      +..+-.-+.++..|+.|.+.+|.+....             ...+.+-++|+.++...|++.+.    +...|...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            5444445667888999999999875211             11234457888888888887532    233455667888


Q ss_pred             EEEeeccccccc----cCccccCCCCCcEEEecCCcccccCCchhhcc---cccceeEEEcccCccc
Q 041463          131 FLVLRNNYLSGE----LPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS---MPGLLHILDLSHNDLS  190 (356)
Q Consensus       131 ~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~  190 (356)
                      .+.+..|.+...    ....+..+++|+.||+++|.++......+...   ++ .|+.+++++|.+.
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~  254 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLE  254 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccc
Confidence            888888877532    22456778888888888888764333333222   22 2667777766654

>PLN03150 hypothetical protein; Provisional

Probab=99.26  E-value=1.3e-11  Score=116.82  Aligned_cols=117  Identities=37%  Similarity=0.611  Sum_probs=102.8

Q ss_pred             cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      .++.|+|+++.+.+..|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCC-cc-cCcCCCccccccCccccCCCCCCCC
Q 041463          314 YNNLSGEIPNT-NQ-FQTLNDPSIYEGNLALCGDPLPKKC  351 (356)
Q Consensus       314 ~n~~~~~~~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~~c  351 (356)
                      +|++++.+|.. .. +..+..+. +.+|...||.|..-.|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCC
Confidence            99999999976 22 23344555 7889999998854333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=1e-13  Score=122.44  Aligned_cols=170  Identities=32%  Similarity=0.532  Sum_probs=95.7

Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcc
Q 041463          106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLS  185 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~  185 (356)
                      ...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|.+++++.|++. .+|..++. ++  |+.|.++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lp--Lkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LP--LKVLIVS  151 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-Cc--ceeEEEe
Confidence            34455555555 45555555555666666666665 55666666666666666666665 45554433 33  6666666


Q ss_pred             cCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463          186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS  265 (356)
Q Consensus       186 ~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~  265 (356)
                      +|+++ .+|..++.+..|                                ..|+.+.|.+. ..|..+.++.+|+.|.+.
T Consensus       152 NNkl~-~lp~~ig~~~tl--------------------------------~~ld~s~nei~-slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTL--------------------------------AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             cCccc-cCCcccccchhH--------------------------------HHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence            66655 444444433332                                22555666555 344455555666666666


Q ss_pred             CCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          266 HNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       266 ~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      .|.+. .+|..+..++ |..||+++|++. .+|-.|..|+.|++|-|.+|++.
T Consensus       198 Rn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  198 RNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            66655 4555555444 566666666666 55555666666666666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=1.3e-12  Score=115.48  Aligned_cols=212  Identities=26%  Similarity=0.397  Sum_probs=144.9

Q ss_pred             eeccCCccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEc
Q 041463           33 LDVAYNELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM  110 (356)
Q Consensus        33 L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l  110 (356)
                      |.|++-.+....-...  .+..-...+++.|++.     .+|..+..+-.|+.+.++.|.+. .+|..+..+..|+++++
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-----elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~l  128 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-----ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDL  128 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-----cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhh
Confidence            4444444443322222  3455567778888776     45566666777888888888877 77777888888888888


Q ss_pred             ccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc
Q 041463          111 SNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS  190 (356)
Q Consensus       111 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  190 (356)
                      +.|.+. ..|..+..++ |+.|.+++|+++ .+|..+.....|..||.+.|.+. .+|..++....  ++.|.+..|.+.
T Consensus       129 s~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s--lr~l~vrRn~l~  202 (722)
T KOG0532|consen  129 SSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS--LRDLNVRRNHLE  202 (722)
T ss_pred             ccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH--HHHHHHhhhhhh
Confidence            888887 5565555554 888888888887 77777887778888888888876 56665554333  777777777765


Q ss_pred             ccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCc
Q 041463          191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLV  270 (356)
Q Consensus       191 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~  270 (356)
                       .+|..+..|+                                 |..||+++|++. .+|..|..+..|++|.|.+|++.
T Consensus       203 -~lp~El~~Lp---------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  203 -DLPEELCSLP---------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -hCCHHHhCCc---------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence             4455444332                                 445888888887 67788888888888888888887


Q ss_pred             CCCCcCcCCCC---CccEEEccCCc
Q 041463          271 GKIPEEIGNFE---WLETLDLSKNK  292 (356)
Q Consensus       271 ~~~~~~~~~~~---~L~~L~L~~n~  292 (356)
                       ..|..++-..   =.++|+...|+
T Consensus       248 -SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  248 -SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             -CChHHHHhccceeeeeeecchhcc
Confidence             4554443322   24566666663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=1.8e-13  Score=114.06  Aligned_cols=92  Identities=26%  Similarity=0.299  Sum_probs=69.9

Q ss_pred             ccccccccccEEeecCCccccc----CchhhhcccccCeEEccCCcCcCCCCcCc-----CCCCCccEEEccCCcccccC
Q 041463          227 KYFTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEI-----GNFEWLETLDLSKNKLSGSI  297 (356)
Q Consensus       227 ~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~i~~~~  297 (356)
                      ..+..+++|++|||..|.++..    +...++.+++|++|++.+|.+.+.....+     ...|+|+.|.+.+|.|+...
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            3466788999999999998753    34567788899999999998876544433     34789999999999998442


Q ss_pred             ----CccccCcCCCCEEEcccCccc
Q 041463          298 ----PPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       298 ----~~~~~~l~~L~~L~l~~n~~~  318 (356)
                          ...+...+.|..|+|++|++.
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCccccc
Confidence                223344788999999999993

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=2.9e-11  Score=94.41  Aligned_cols=122  Identities=29%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           29 TLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      .+++|+|.+|.|.. +...- .+.+|+.|++++|.+..     + +.+..++.|++|++++|.++...+.....+++|++
T Consensus        20 ~~~~L~L~~n~I~~-Ie~L~~~l~~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IENLGATLDKLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccc-ccchhhhhcCCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            45666666666653 22221 34566666666666552     1 23445566666666666665332211234556666


Q ss_pred             EEcccCcccccc-cccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEE
Q 041463          108 LDMSNNSLSGSI-PESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLD  157 (356)
Q Consensus       108 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~  157 (356)
                      |++++|++.+.. -..++.+++|++|++.+|+++...-   ..+..+|+|+.||
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            666666554321 1233445555555555555542211   1234445555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=6.9e-12  Score=107.60  Aligned_cols=209  Identities=25%  Similarity=0.204  Sum_probs=108.0

Q ss_pred             CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccc--cccccccCCCCCcEEEcccCcccccccccc-cC
Q 041463           49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG--EIPLLFSNSSFLYILDMSNNSLSGSIPESI-GS  125 (356)
Q Consensus        49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~  125 (356)
                      ++.+|+.+.|.++.+...+..   .....+++++.|++++|-+..  ........+++|+.|+++.|++........ ..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            456777777777766421100   234456777777777765542  122334556777777777776542211111 13


Q ss_pred             CCCCcEEEeeccccccccCc-cccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCc
Q 041463          126 LRTLRFLVLRNNYLSGELPL-SLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK  204 (356)
Q Consensus       126 l~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~  204 (356)
                      +++|+.|.++.|.++..... .+..+++|+.|++++|..  .............|+.|++++|.+... +.         
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~i~~~L~~LdLs~N~li~~-~~---------  263 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI--ILIKATSTKILQTLQELDLSNNNLIDF-DQ---------  263 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc--cceecchhhhhhHHhhccccCCccccc-cc---------
Confidence            55677777777766532222 234566777777776631  111111222233367777776665321 10         


Q ss_pred             ccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc-Cchh-----hhcccccCeEEccCCcCcCCCC--cC
Q 041463          205 VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE-IPAE-----LTSLVHLGTLNLSHNHLVGKIP--EE  276 (356)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~-----~~~~~~L~~L~L~~n~i~~~~~--~~  276 (356)
                                           ....+.++.|+.|+++.+++.+. .|..     ...+++|+.|++..|+|. .++  ..
T Consensus       264 ---------------------~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~  321 (505)
T KOG3207|consen  264 ---------------------GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNH  321 (505)
T ss_pred             ---------------------ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccch
Confidence                                 01123445555566666666542 1111     234566666666666664 222  13


Q ss_pred             cCCCCCccEEEccCCccc
Q 041463          277 IGNFEWLETLDLSKNKLS  294 (356)
Q Consensus       277 ~~~~~~L~~L~L~~n~i~  294 (356)
                      +..+++|++|.+..|.++
T Consensus       322 l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  322 LRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccchhhhhhccccccc
Confidence            344566666666666665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=2.7e-11  Score=117.38  Aligned_cols=288  Identities=17%  Similarity=0.191  Sum_probs=159.7

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCc--ccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCC
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN--FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL  105 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L  105 (356)
                      ...+.+.+.++.+. ..+....+++|++|-+.+|.  +. .++   +..|..+|.|++||+++|.-.+..|..++.+-+|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~-~is---~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLL-EIS---GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhh-hcC---HHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            35677777777666 45555566788888888875  22 111   2347778888888888876555788888888888


Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc--ccCCchhhcccccceeEEE
Q 041463          106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS--GNIPAWIGASMPGLLHILD  183 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~L~~L~  183 (356)
                      ++|+++++.+. ..|..+.++..|.+|++..+......+.....+++|++|.+......  ....... ..+ ..|+.+.
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~L-e~L~~ls  674 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENL-EHLENLS  674 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcc-cchhhhe
Confidence            88888888888 77888888888888888877655455556666888888888665421  1111111 111 1133333


Q ss_pred             cccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhh-----hc-cc
Q 041463          184 LSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL-----TS-LV  257 (356)
Q Consensus       184 l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-----~~-~~  257 (356)
                      ......  .+...+..+..|.........  .   .............+.+|+.|.+.++.+.+....+.     .. ++
T Consensus       675 ~~~~s~--~~~e~l~~~~~L~~~~~~l~~--~---~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~  747 (889)
T KOG4658|consen  675 ITISSV--LLLEDLLGMTRLRSLLQSLSI--E---GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP  747 (889)
T ss_pred             eecchh--HhHhhhhhhHHHHHHhHhhhh--c---ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence            322211  000111111111110000000  0   01112223345567778888888877754322221     11 33


Q ss_pred             ccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc--CCCCcccCcCC
Q 041463          258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE--IPNTNQFQTLN  331 (356)
Q Consensus       258 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~l~  331 (356)
                      ++..+...++... ..+.+.--.++|+.|.+..|...+.+......+..+..+-+..+.+.+.  .....+++.+.
T Consensus       748 ~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~  822 (889)
T KOG4658|consen  748 NLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY  822 (889)
T ss_pred             HHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE
Confidence            4444445555433 3344444567788888888766655555455555555444444444433  33334444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=3.1e-11  Score=99.01  Aligned_cols=60  Identities=32%  Similarity=0.332  Sum_probs=28.0

Q ss_pred             CCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          102 SSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       102 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      +..|+++|+++|.|. .......-.|.++.|+++.|.+.  ....++.+++|..||+++|.+.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee--eehhhhhcccceEeecccchhH
Confidence            344555555555544 23333333445555555555553  1223444555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=1e-10  Score=105.85  Aligned_cols=79  Identities=44%  Similarity=0.624  Sum_probs=35.7

Q ss_pred             EeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463          238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL  317 (356)
Q Consensus       238 L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  317 (356)
                      +.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|++++. +. +..+.+++.+++++|.+
T Consensus       214 l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             hhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccc
Confidence            444444322 22333444444444444455444 2234444445555555555555522 22 44445555555555544


Q ss_pred             ccc
Q 041463          318 SGE  320 (356)
Q Consensus       318 ~~~  320 (356)
                      ...
T Consensus       290 ~~~  292 (394)
T COG4886         290 SNA  292 (394)
T ss_pred             ccc
Confidence            433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=4.3e-11  Score=93.41  Aligned_cols=134  Identities=24%  Similarity=0.234  Sum_probs=50.9

Q ss_pred             cCCCCCCCCCCcEEecCCCcccCcCCCCCCcccC-CcccccEEecccccccccccccccCCCCCcEEEcccCcccccccc
Q 041463           43 RVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIG-NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPE  121 (356)
Q Consensus        43 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  121 (356)
                      ..+...+..++++|+|++|.|..     + +.+. .+.+|+.|++++|.+...  ..+..+++|++|++++|++....+.
T Consensus        11 ~~~~~~n~~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen   11 QIAQYNNPVKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH
T ss_pred             ccccccccccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc
Confidence            44555567789999999999872     2 3454 578999999999999844  3577899999999999999855433


Q ss_pred             cccCCCCCcEEEeeccccccc-cCccccCCCCCcEEEecCCcccccC--CchhhcccccceeEEEcc
Q 041463          122 SIGSLRTLRFLVLRNNYLSGE-LPLSLKNCTFMESLDLGDNNLSGNI--PAWIGASMPGLLHILDLS  185 (356)
Q Consensus       122 ~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~~~L~~L~l~  185 (356)
                      ....+++|++|.+++|++... ....+..+++|+.|++.+|++....  ...+...+|. |+.||..
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~-Lk~LD~~  148 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS-LKVLDGQ  148 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT--SEETTE
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh-hheeCCE
Confidence            224689999999999999742 2356788999999999999987331  1233344555 7887754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=3.3e-11  Score=98.89  Aligned_cols=130  Identities=28%  Similarity=0.307  Sum_probs=87.0

Q ss_pred             CCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccc
Q 041463          151 TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT  230 (356)
Q Consensus       151 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
                      +.|+.+|+++|.+. .+...+ +..|. ++.|+++.|.+....                                  .+.
T Consensus       284 q~LtelDLS~N~I~-~iDESv-KL~Pk-ir~L~lS~N~i~~v~----------------------------------nLa  326 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESV-KLAPK-LRRLILSQNRIRTVQ----------------------------------NLA  326 (490)
T ss_pred             hhhhhccccccchh-hhhhhh-hhccc-eeEEeccccceeeeh----------------------------------hhh
Confidence            45667777777665 333322 22343 777777777654211                                  123


Q ss_pred             ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccccc-CCccccCcCCCCE
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS-IPPSMASLIFMNH  309 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~  309 (356)
                      .+++|+.|||++|.++ ....|-..+.+.++|.+++|.|.+  ...+..+.+|..||+++|+|.+. -...++++|.|+.
T Consensus       327 ~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  327 ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence            4556777888888887 344566677888889999888762  24566778888999999988732 2335778888998


Q ss_pred             EEcccCccccc
Q 041463          310 LNLSYNNLSGE  320 (356)
Q Consensus       310 L~l~~n~~~~~  320 (356)
                      +.+.+|++.+.
T Consensus       404 l~L~~NPl~~~  414 (490)
T KOG1259|consen  404 LRLTGNPLAGS  414 (490)
T ss_pred             HhhcCCCcccc
Confidence            88988888753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.4e-11  Score=105.71  Aligned_cols=211  Identities=25%  Similarity=0.265  Sum_probs=142.7

Q ss_pred             CcccccEEeccccccccccc-ccccCCCCCcEEEcccCcccc--cccccccCCCCCcEEEeeccccccccCc-cccCCCC
Q 041463           77 NLKQLITLVISNNNLSGEIP-LLFSNSSFLYILDMSNNSLSG--SIPESIGSLRTLRFLVLRNNYLSGELPL-SLKNCTF  152 (356)
Q Consensus        77 ~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~l~~l~~  152 (356)
                      .+.+|+++.+.++.+..... .....+++++.||+++|-+..  .+......+|+|+.|.++.|.+...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46788888998888763221 467788999999999987652  2334556788999999999887521111 1235678


Q ss_pred             CcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccc
Q 041463          153 MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL  232 (356)
Q Consensus       153 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (356)
                      |+.|.++.|+++..-..++...+|. ++.|++..|...  ...                              ......+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~--~~~------------------------------~~~~~i~  245 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEII--LIK------------------------------ATSTKIL  245 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhccccc--cee------------------------------cchhhhh
Confidence            8899999998875445555555665 888888887411  100                              0112334


Q ss_pred             ccccEEeecCCcccccC-chhhhcccccCeEEccCCcCcCC-CCcC-----cCCCCCccEEEccCCcccccCC--ccccC
Q 041463          233 YLVNLLDLSSTNLSAEI-PAELTSLVHLGTLNLSHNHLVGK-IPEE-----IGNFEWLETLDLSKNKLSGSIP--PSMAS  303 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~-~~~~~~~~~L~~L~L~~n~i~~~-~~~~-----~~~~~~L~~L~L~~n~i~~~~~--~~~~~  303 (356)
                      ..|+.|+|++|.+.+.. ......++.|..|+++.+.|.+. .|+.     ...+++|++|+++.|+|. .++  ..+..
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~  324 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT  324 (505)
T ss_pred             hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhc
Confidence            55777999998876422 23456778899999999988753 2333     245789999999999997 333  23455


Q ss_pred             cCCCCEEEcccCcccccC
Q 041463          304 LIFMNHLNLSYNNLSGEI  321 (356)
Q Consensus       304 l~~L~~L~l~~n~~~~~~  321 (356)
                      +++|+.+.+..|.++...
T Consensus       325 l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNKET  342 (505)
T ss_pred             cchhhhhhcccccccccc
Confidence            778888888888887653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=3.4e-10  Score=102.41  Aligned_cols=197  Identities=34%  Similarity=0.521  Sum_probs=126.4

Q ss_pred             EEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCC-CCcEEEcccCcccccccccccCCCCCcEEE
Q 041463           55 TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS-FLYILDMSNNSLSGSIPESIGSLRTLRFLV  133 (356)
Q Consensus        55 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  133 (356)
                      .+++..+.+....     ..+...+.++.+++.++.+. .++....... +|+.|+++.|.+. ..+..+..+++|+.|+
T Consensus        97 ~l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~  169 (394)
T COG4886          97 SLDLNLNRLRSNI-----SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD  169 (394)
T ss_pred             eeeccccccccCc-----hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccc
Confidence            4666666653221     22334567888888888887 4455555553 8888888888887 4445567788888888


Q ss_pred             eeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCcc
Q 041463          134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQH  213 (356)
Q Consensus       134 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~  213 (356)
                      +++|+++ .++......+.|+.|++++|.+. .+|....  .+..++.+.+++|... ..+..+                
T Consensus       170 l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~--~~~~L~~l~~~~N~~~-~~~~~~----------------  228 (394)
T COG4886         170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE--LLSALEELDLSNNSII-ELLSSL----------------  228 (394)
T ss_pred             cCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh--hhhhhhhhhhcCCcce-ecchhh----------------
Confidence            8888887 55555557788888888888887 5555431  2223788888777422 222222                


Q ss_pred             CCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcc
Q 041463          214 EGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL  293 (356)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i  293 (356)
                                      ..+.++..+.+.++.+. ..+..+..+++++.|++++|.+++ ++. +..+.+++.|+++++.+
T Consensus       229 ----------------~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         229 ----------------SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ----------------hhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccc
Confidence                            23334444666666665 234556666777788888887773 333 66777788888887777


Q ss_pred             cccCC
Q 041463          294 SGSIP  298 (356)
Q Consensus       294 ~~~~~  298 (356)
                      ....+
T Consensus       290 ~~~~~  294 (394)
T COG4886         290 SNALP  294 (394)
T ss_pred             cccch
Confidence            64433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=1.4e-10  Score=74.66  Aligned_cols=61  Identities=41%  Similarity=0.544  Sum_probs=46.5

Q ss_pred             cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463          257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL  317 (356)
Q Consensus       257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  317 (356)
                      |+|++|++++|.+....+..|..+++|++|++++|+++...+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677788888877755556777788888888888888766777788888888888888764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.1e-09  Score=70.45  Aligned_cols=61  Identities=38%  Similarity=0.500  Sum_probs=56.2

Q ss_pred             ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcc
Q 041463          233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL  293 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i  293 (356)
                      ++|+.|++++|.+....+.+|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999987778999999999999999999977788999999999999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=3.8e-09  Score=100.24  Aligned_cols=98  Identities=30%  Similarity=0.484  Sum_probs=85.0

Q ss_pred             cccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCc-
Q 041463          226 RKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASL-  304 (356)
Q Consensus       226 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-  304 (356)
                      +..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|+.++.+++|+.|+|++|++++.+|..+... 
T Consensus       435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~  514 (623)
T PLN03150        435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL  514 (623)
T ss_pred             CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence            3345667788889999999998999999999999999999999999999999999999999999999999999887763 


Q ss_pred             CCCCEEEcccCcccccCCC
Q 041463          305 IFMNHLNLSYNNLSGEIPN  323 (356)
Q Consensus       305 ~~L~~L~l~~n~~~~~~~~  323 (356)
                      .++..+++.+|+..+-.|.
T Consensus       515 ~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        515 LHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             ccCceEEecCCccccCCCC
Confidence            4677899999987655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=9.7e-10  Score=106.77  Aligned_cols=268  Identities=22%  Similarity=0.230  Sum_probs=168.8

Q ss_pred             cCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccc--ccccccccccCCCCCcEEEcccCccccccc
Q 041463           43 RVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNN--LSGEIPLLFSNSSFLYILDMSNNSLSGSIP  120 (356)
Q Consensus        43 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  120 (356)
                      ..+........+.+.+-+|.+..     ++.. ...++|++|-+..|.  +......+|..++.|+.||+++|.-...+|
T Consensus       515 ~~~~~~~~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP  588 (889)
T KOG4658|consen  515 EIPQVKSWNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP  588 (889)
T ss_pred             ccccccchhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence            35666677889999999887752     2222 235689999999986  554566679999999999999988777999


Q ss_pred             ccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc--ccCCCCcC
Q 041463          121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS--GFIPPRVG  198 (356)
Q Consensus       121 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~  198 (356)
                      ..++.+-+||+|+++++.+. .+|..+..++.|.+|++..+.-....+.. ...+.+ |+.|.+......  ......+.
T Consensus       589 ~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~-Lr~L~l~~s~~~~~~~~l~el~  665 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQS-LRVLRLPRSALSNDKLLLKELE  665 (889)
T ss_pred             hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch-hhhccc-ccEEEeeccccccchhhHHhhh
Confidence            99999999999999999999 89999999999999999987644344333 333444 899988765421  11112223


Q ss_pred             CCCCCcccCCCCCccCCCeeeeecCCccccccccccc----cEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCC
Q 041463          199 NLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV----NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP  274 (356)
Q Consensus       199 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  274 (356)
                      .++.|+....   .....       .....+..+..|    +.+.+.++... ..+..+..+.+|+.|.+.++.+.+...
T Consensus       666 ~Le~L~~ls~---~~~s~-------~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~  734 (889)
T KOG4658|consen  666 NLEHLENLSI---TISSV-------LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVI  734 (889)
T ss_pred             cccchhhhee---ecchh-------HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhc
Confidence            3333332111   00000       000011111121    22333333322 344556778899999999998864333


Q ss_pred             cCcC-----C-CCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCC
Q 041463          275 EEIG-----N-FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLN  331 (356)
Q Consensus       275 ~~~~-----~-~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~  331 (356)
                      .+..     . ++++..+.+.+|... ..+.+..-.++|+.|++.+|+....+.+. ..+..++
T Consensus       735 ~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~  797 (889)
T KOG4658|consen  735 EWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK  797 (889)
T ss_pred             ccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence            3321     1 445556666666444 23333334589999999998777554443 4444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.73  E-value=2.1e-10  Score=104.62  Aligned_cols=174  Identities=28%  Similarity=0.228  Sum_probs=113.4

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCC---------ccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYN---------ELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPK   73 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~---------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~   73 (356)
                      .+||+|.|.++.+..  ..++..+-.+|+.|.-.+.         .-.+.+...+.+.+|.+.++++|.+.     .+-.
T Consensus       109 ~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-----~mD~  181 (1096)
T KOG1859|consen  109 RSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-----LMDE  181 (1096)
T ss_pred             cceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-----hHHH
Confidence            456666666666652  3333333234444433322         11123444455778888888888776     2335


Q ss_pred             ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCC
Q 041463           74 SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFM  153 (356)
Q Consensus        74 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  153 (356)
                      +++-++.++.|+|++|.+++..  .++.+++|++||++.|.+..+.-.....+ .|+.|.+++|.++.  ...+.++.+|
T Consensus       182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~LksL  256 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLKSL  256 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh--hhhHHhhhhh
Confidence            6777889999999999987553  78899999999999999884333333444 49999999998862  3467788889


Q ss_pred             cEEEecCCcccccCCchhhcccccceeEEEcccCcc
Q 041463          154 ESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL  189 (356)
Q Consensus       154 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  189 (356)
                      +.||+++|-+.+.-.-.....+.. |+.|.+.||++
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~-L~~L~LeGNPl  291 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSS-LIVLWLEGNPL  291 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHH-HHHHhhcCCcc
Confidence            999999887763322222222222 78888888865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.1e-10  Score=95.73  Aligned_cols=181  Identities=23%  Similarity=0.154  Sum_probs=80.4

Q ss_pred             ccEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecc-ccccccC-ccccCCCCCcEEE
Q 041463           81 LITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNN-YLSGELP-LSLKNCTFMESLD  157 (356)
Q Consensus        81 L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~-~~l~~l~~L~~L~  157 (356)
                      ++.+|++...++.. ....++.+.+|+.|.+.+.++.+.....++.-.+|+.|+++.+ .++.... -.+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            44555555444321 2223444555555555555555444444444455555555544 2221111 1234455555555


Q ss_pred             ecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccE
Q 041463          158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL  237 (356)
Q Consensus       158 l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  237 (356)
                      +++|.+.......+..+..+.++.|+++|+.-. ....   +                         ......++++|..
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-l~~s---h-------------------------~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-LQKS---H-------------------------LSTLVRRCPNLVH  317 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhh-hhhh---H-------------------------HHHHHHhCCceee
Confidence            555554323333333334444555555544311 0000   0                         0111234555555


Q ss_pred             EeecCCc-ccccCchhhhcccccCeEEccCCcCcCCCCc---CcCCCCCccEEEccCCc
Q 041463          238 LDLSSTN-LSAEIPAELTSLVHLGTLNLSHNHLVGKIPE---EIGNFEWLETLDLSKNK  292 (356)
Q Consensus       238 L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~---~~~~~~~L~~L~L~~n~  292 (356)
                      |||+.+. ++......|..++.|++|.++.|..  ++|+   .+...|+|.+|++-+|-
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            6665544 2322334455556666666666552  2333   23445566666655553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=3.7e-09  Score=95.93  Aligned_cols=127  Identities=26%  Similarity=0.299  Sum_probs=66.8

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      ..++.+.+..+.+.......-.+.+|+.|++.+|.+..     +...+..+++|++|++++|.|+..  ..+..++.|+.
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhh-----cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence            34555555555555322223345666666666666652     111145566666666666666533  22445555666


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCccc
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~  164 (356)
                      |++.+|.+...  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            66666666522  123335566666666666653222 1 345556666666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=3.2e-10  Score=103.53  Aligned_cols=111  Identities=29%  Similarity=0.361  Sum_probs=86.2

Q ss_pred             cccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcC-cCCCCCccEEEccCCcccccCCccccCcCCCC
Q 041463          230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE-IGNFEWLETLDLSKNKLSGSIPPSMASLIFMN  308 (356)
Q Consensus       230 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  308 (356)
                      .-++.++.|+|+.|++...  ..+..++.|++|+|+.|.+. .+|.. -.++ .|+.|.+++|.++ +.- .+.++.+|+
T Consensus       184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL~-gie~LksL~  257 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TLR-GIENLKSLY  257 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hhh-hHHhhhhhh
Confidence            3456677799999999743  36788899999999999987 55542 2333 3999999999998 333 367899999


Q ss_pred             EEEcccCccccc--CCCCcccCcCCCccccccCccccCCCCC
Q 041463          309 HLNLSYNNLSGE--IPNTNQFQTLNDPSIYEGNLALCGDPLP  348 (356)
Q Consensus       309 ~L~l~~n~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~  348 (356)
                      .||+++|=+.+.  ...+..+..|.++. +.|||..| +||+
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~-LeGNPl~c-~p~h  297 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLW-LEGNPLCC-APWH  297 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHh-hcCCcccc-CHHH
Confidence            999999988864  55557778888888 89999888 8885

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=3.5e-09  Score=96.04  Aligned_cols=245  Identities=23%  Similarity=0.233  Sum_probs=137.6

Q ss_pred             CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC
Q 041463           49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT  128 (356)
Q Consensus        49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  128 (356)
                      .+..++.+.++.|.+..     +-..+..+.+++.+++.+|.+.. +...+..+++|++|++++|.|++..+  +..++.
T Consensus        70 ~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~  141 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTL  141 (414)
T ss_pred             HhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccc
Confidence            45677777788887763     11346678899999999999873 33336778999999999999885443  566777


Q ss_pred             CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCC
Q 041463          129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPP  208 (356)
Q Consensus       129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~  208 (356)
                      |+.|.+.+|.+..  ...+..++.|+.+++++|.+...-+.. ...+.. ++.+.+.+|.+...  ..+..+..+.....
T Consensus       142 L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~-l~~l~l~~n~i~~i--~~~~~~~~l~~~~l  215 (414)
T KOG0531|consen  142 LKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELIS-LEELDLGGNSIREI--EGLDLLKKLVLLSL  215 (414)
T ss_pred             hhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccc-hHHHhccCCchhcc--cchHHHHHHHHhhc
Confidence            9999999998863  245556888999999999876333311 122332 77778877765421  11111111111000


Q ss_pred             --CCCccCCCeeeeecCCccccccccc--cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCcc
Q 041463          209 --KSVQHEGRLRVVTKGSERKYFTTLY--LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE  284 (356)
Q Consensus       209 --~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~  284 (356)
                        ..+..            ......+.  +|+.+.++++++.. .+..+..+..+..+++.++.+...  ..+...+.+.
T Consensus       216 ~~n~i~~------------~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~  280 (414)
T KOG0531|consen  216 LDNKISK------------LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLS  280 (414)
T ss_pred             cccccee------------ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHH
Confidence              00000            00001111  25556666666552 223344455566666666655421  1233444555


Q ss_pred             EEEccCCccccc---CCc-cccCcCCCCEEEcccCcccccCC
Q 041463          285 TLDLSKNKLSGS---IPP-SMASLIFMNHLNLSYNNLSGEIP  322 (356)
Q Consensus       285 ~L~L~~n~i~~~---~~~-~~~~l~~L~~L~l~~n~~~~~~~  322 (356)
                      .+....+++...   ... .....+.++.+.+..|++....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  281 ELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             HhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            555555555421   111 12335566666666666665444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=8.2e-10  Score=90.66  Aligned_cols=214  Identities=19%  Similarity=0.139  Sum_probs=114.6

Q ss_pred             CCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc-ccccCCchhhcccccceeE
Q 041463          104 FLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN-LSGNIPAWIGASMPGLLHI  181 (356)
Q Consensus       104 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~  181 (356)
                      .||++|++...++.. .-..++.+.+|+.|.+.++++.+.+...++.-.+|+.++++.+. ++......+...+.. |..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~-L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR-LDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh-Hhh
Confidence            366666666555421 12234455566666666666655555555555666666666553 332222333333333 566


Q ss_pred             EEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccc---ccCchhhhcccc
Q 041463          182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLS---AEIPAELTSLVH  258 (356)
Q Consensus       182 L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~~~~  258 (356)
                      |++++|.+.......                              ..-.--++|+.|+++|+.-.   +....-...+|+
T Consensus       265 LNlsWc~l~~~~Vtv------------------------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~  314 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTV------------------------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN  314 (419)
T ss_pred             cCchHhhccchhhhH------------------------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence            666665433111000                              00011235666888886532   122233456789


Q ss_pred             cCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCcccccCCcc---ccCcCCCCEEEcccCcccccCCCC-cccCcCCCc
Q 041463          259 LGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPS---MASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDP  333 (356)
Q Consensus       259 L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~  333 (356)
                      |.+|+|++|. ++......|-.++.|++|.++.|...  +|..   +...|.|.+|++-++---+...-+ ..++.|+..
T Consensus       315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin  392 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKIN  392 (419)
T ss_pred             eeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccccc
Confidence            9999999886 44333345567889999999998653  4443   456788999998877544333322 445555433


Q ss_pred             cccccCccccCCCCCCCCCC
Q 041463          334 SIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       334 ~~~~~~~~~~~~~~~~~c~~  353 (356)
                      ..+.+   ....|..-+|+.
T Consensus       393 ~q~~~---~iarpv~~~~~s  409 (419)
T KOG2120|consen  393 CQHFN---FIARPVSGQCES  409 (419)
T ss_pred             ceeee---eeeccccccccc
Confidence            31111   123555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.42  E-value=3.9e-08  Score=79.98  Aligned_cols=187  Identities=21%  Similarity=0.193  Sum_probs=128.1

Q ss_pred             cccceEEEcccccccccCCchHHhhc---cCCcEeeccCCccCC----c--------CCCCCCCCCCcEEecCCCcccCc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLS---LTLDELDVAYNELRG----R--------VPNSLGFNFPATVDLSSNNFEGR   66 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~--------~~~~~~~~~L~~L~l~~n~~~~~   66 (356)
                      +..++.++|++|.|......++++..   .+|++.++++- +++    .        .+..++|++|+++++|+|.+...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            45688999999999876666666654   56666666653 121    1        12234799999999999999877


Q ss_pred             CCCCCCcccCCcccccEEecccccccccccc-------------cccCCCCCcEEEcccCcccccc----cccccCCCCC
Q 041463           67 LPLCIPKSIGNLKQLITLVISNNNLSGEIPL-------------LFSNSSFLYILDMSNNSLSGSI----PESIGSLRTL  129 (356)
Q Consensus        67 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L  129 (356)
                      +|.-+-.-+.+...|..|.+++|.+....-.             -..+-|.|+.+++..|++..-.    ...+..-.+|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            7655555677889999999999987522111             1335688999999999876221    2223333578


Q ss_pred             cEEEeeccccccccC-----ccccCCCCCcEEEecCCcccccCCchhhc---ccccceeEEEcccCccc
Q 041463          130 RFLVLRNNYLSGELP-----LSLKNCTFMESLDLGDNNLSGNIPAWIGA---SMPGLLHILDLSHNDLS  190 (356)
Q Consensus       130 ~~L~l~~~~l~~~~~-----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~  190 (356)
                      +.+.+..|.+.....     ..+..+.+|+.||+++|.++.........   .++. ++.|.+.+|-+.
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~-lrEL~lnDClls  255 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL-LRELRLNDCLLS  255 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch-hhhccccchhhc
Confidence            999999988864322     23456789999999999887443333332   2333 788998888664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.39  E-value=8e-07  Score=69.30  Aligned_cols=129  Identities=21%  Similarity=0.190  Sum_probs=96.5

Q ss_pred             CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      .-+++++++..+.....-..-......+++++|.+...      ..|.+++.|.+|.+++|.|+.+.|..-..+++|+.|
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L   93 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL   93 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceE
Confidence            45677887776653222111356888999999988632      467889999999999999997777777778999999


Q ss_pred             EcccCcccccc-cccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEEecCCcc
Q 041463          109 DMSNNSLSGSI-PESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus       109 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~~~l  163 (356)
                      .+.+|.+.... -..++.+|.|++|.+-+|.++..--   ..+..+++|+.||+++-.-
T Consensus        94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            99999876332 2346778999999999998874322   3567889999999987543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=2.2e-08  Score=82.46  Aligned_cols=85  Identities=31%  Similarity=0.338  Sum_probs=43.9

Q ss_pred             cccccEEecccccccc--cccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCc
Q 041463           78 LKQLITLVISNNNLSG--EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFME  154 (356)
Q Consensus        78 l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~  154 (356)
                      ...++++++.+|.|++  .+...+..+|.|+.|+++.|.+....-..-....+|+.|.+.+..+...-. ..+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4456666666666542  222334556666666666665542211111234466666666665543222 2334556666


Q ss_pred             EEEecCCc
Q 041463          155 SLDLGDNN  162 (356)
Q Consensus       155 ~L~l~~~~  162 (356)
                      .|+++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            66666663

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.35  E-value=2.8e-09  Score=91.44  Aligned_cols=277  Identities=17%  Similarity=0.105  Sum_probs=153.2

Q ss_pred             ceEEEccccccc-ccCCchHHhhccCCcEeeccCCccC-CcCCCCC--CCCCCcEEecCCCc-ccCcCCCCCCcccCCcc
Q 041463            5 LRTLVLNKARIS-DTIPDWFWQLSLTLDELDVAYNELR-GRVPNSL--GFNFPATVDLSSNN-FEGRLPLCIPKSIGNLK   79 (356)
Q Consensus         5 L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~--~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~   79 (356)
                      |+.|.+.++.=. ......+...+|+++.|.+.+|... +.....+  .+++|++|++..|. ++...   +-.....++
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~---Lk~la~gC~  216 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS---LKYLAEGCR  216 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH---HHHHHHhhh
Confidence            677888887443 3333445556799999999888522 1111112  58999999999853 33210   111234588


Q ss_pred             cccEEeccccc-cccc-ccccccCCCCCcEEEcccCccc-ccc-cccccCCCCCcEEEeecc-ccccccC-ccccCCCCC
Q 041463           80 QLITLVISNNN-LSGE-IPLLFSNSSFLYILDMSNNSLS-GSI-PESIGSLRTLRFLVLRNN-YLSGELP-LSLKNCTFM  153 (356)
Q Consensus        80 ~L~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~~~~l~~L~~L~l~~~-~l~~~~~-~~l~~l~~L  153 (356)
                      +|.++++++|. +.+. +...++++.+++.+...||.-. ... ...-..+.-+..+++..| .++++.. ..-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            99999999994 4432 2234566777777777776421 111 111123444555555555 3333221 122346678


Q ss_pred             cEEEecCCc-ccccCCchhhcccccceeEEEcccCcc-cccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccc
Q 041463          154 ESLDLGDNN-LSGNIPAWIGASMPGLLHILDLSHNDL-SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTT  231 (356)
Q Consensus       154 ~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (356)
                      +.++.+++. +++..-..++.... +|+.+-+.+|+. +...      ++                         ..-.+
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~------ft-------------------------~l~rn  344 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCH-NLQVLELSGCQQFSDRG------FT-------------------------MLGRN  344 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCC-ceEEEeccccchhhhhh------hh-------------------------hhhcC
Confidence            888887765 33333334444444 388888888762 1110      00                         11134


Q ss_pred             cccccEEeecCCccccc--CchhhhcccccCeEEccCCc-CcCCC----CcCcCCCCCccEEEccCCcc-cccCCccccC
Q 041463          232 LYLVNLLDLSSTNLSAE--IPAELTSLVHLGTLNLSHNH-LVGKI----PEEIGNFEWLETLDLSKNKL-SGSIPPSMAS  303 (356)
Q Consensus       232 ~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~n~-i~~~~----~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~  303 (356)
                      .+.|+.+++..+.....  +...-.+++.|+++.++.|. |++..    ...-..+..|+.+.+++|+. ++...+.+..
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            55566677766654321  22222345677777777665 33321    12224456677777777744 3445556666


Q ss_pred             cCCCCEEEcccCc
Q 041463          304 LIFMNHLNLSYNN  316 (356)
Q Consensus       304 l~~L~~L~l~~n~  316 (356)
                      +++|+.+++-+|+
T Consensus       425 c~~Leri~l~~~q  437 (483)
T KOG4341|consen  425 CRNLERIELIDCQ  437 (483)
T ss_pred             Ccccceeeeechh
Confidence            7777777776663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=4.8e-07  Score=53.22  Aligned_cols=37  Identities=43%  Similarity=0.686  Sum_probs=22.5

Q ss_pred             CCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          281 EWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       281 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      ++|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666777777666 34445666677777777777665

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=6.5e-08  Score=78.71  Aligned_cols=90  Identities=18%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             cccccccEEeecCCccccc----CchhhhcccccCeEEccCCcCcCCCCcCc------CCCCCccEEEccCCcccccC--
Q 041463          230 TTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEI------GNFEWLETLDLSKNKLSGSI--  297 (356)
Q Consensus       230 ~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~------~~~~~L~~L~L~~n~i~~~~--  297 (356)
                      ..+.+|+.|||..|.++..    ...+++.++.|++|.+.+|-++......+      ...|+|..|...+|.+.+..  
T Consensus       211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence            3556777777777776642    23345566677777777776654332221      13567777777777665321  


Q ss_pred             ----Cccc-cCcCCCCEEEcccCcccc
Q 041463          298 ----PPSM-ASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       298 ----~~~~-~~l~~L~~L~l~~n~~~~  319 (356)
                          +.+. ..+|-|..+.+.+|++..
T Consensus       291 ~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         291 DISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             eechhhhhhcccHHHHHHHHccCcchh
Confidence                1111 235666666677777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=5.6e-07  Score=74.35  Aligned_cols=110  Identities=27%  Similarity=0.241  Sum_probs=75.1

Q ss_pred             cccccEEeccccccccc--ccccccCCCCCcEEEcccCcccc--cccccccCCCCCcEEEeeccccccccCccc-cCCCC
Q 041463           78 LKQLITLVISNNNLSGE--IPLLFSNSSFLYILDMSNNSLSG--SIPESIGSLRTLRFLVLRNNYLSGELPLSL-KNCTF  152 (356)
Q Consensus        78 l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l-~~l~~  152 (356)
                      ...+..+.+.++.|...  ....-.....++++|+.+|.+.+  .....+.++|.|++|+++.|++. .....+ ....+
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKN  122 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccc
Confidence            34455667777766422  11222356789999999999873  23345678999999999999987 333333 35678


Q ss_pred             CcEEEecCCcccccCCchhhcccccceeEEEcccCcc
Q 041463          153 MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL  189 (356)
Q Consensus       153 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  189 (356)
                      |+.|-+.+..+.-.....+....|. ++.|+++.|.+
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~-vtelHmS~N~~  158 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPK-VTELHMSDNSL  158 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchh-hhhhhhccchh
Confidence            9999999988764555555555555 78888888754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.17  E-value=1.5e-08  Score=86.97  Aligned_cols=277  Identities=17%  Similarity=0.097  Sum_probs=130.3

Q ss_pred             CcccceEEEcccc-cccccCCchHHhhccCCcEeeccCC-ccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCcccC
Q 041463            1 NQTELRTLVLNKA-RISDTIPDWFWQLSLTLDELDVAYN-ELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSIG   76 (356)
Q Consensus         1 ~l~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~   76 (356)
                      +++++++|.+.++ .+++..-..+...|+.+++|++..| .+++.....+  ++++|++|+++.+.-...  ..+-.-.+
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--~gv~~~~r  239 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG--NGVQALQR  239 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc--CcchHHhc
Confidence            3566666666666 4455555556666677777777664 3333222222  567777777776632211  01112334


Q ss_pred             CcccccEEeccccccccc--ccccccCCCCCcEEEcccCc-ccccccccc-cCCCCCcEEEeecccc-ccccCcc-ccCC
Q 041463           77 NLKQLITLVISNNNLSGE--IPLLFSNSSFLYILDMSNNS-LSGSIPESI-GSLRTLRFLVLRNNYL-SGELPLS-LKNC  150 (356)
Q Consensus        77 ~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~l-~~~~~~~-l~~l  150 (356)
                      ++..++.+.+.+|.-...  +...-..+..+..+++..|. +++.....+ ..+..|++|..+++.. ++..... ..+.
T Consensus       240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            455555665555431100  01111223344555544443 222211111 1245566666666532 2221122 2455


Q ss_pred             CCCcEEEecCCc-ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccc
Q 041463          151 TFMESLDLGDNN-LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYF  229 (356)
Q Consensus       151 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (356)
                      .+|+.+.+.+++ +++.....+...++. |+.+++.++.....  ..+.                            ..-
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~-Le~l~~e~~~~~~d--~tL~----------------------------sls  368 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPH-LERLDLEECGLITD--GTLA----------------------------SLS  368 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChh-hhhhcccccceehh--hhHh----------------------------hhc
Confidence            677777777765 333333333333333 66666665543211  0111                            112


Q ss_pred             cccccccEEeecCCccc-ccC----chhhhcccccCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCc-ccccCC-ccc
Q 041463          230 TTLYLVNLLDLSSTNLS-AEI----PAELTSLVHLGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNK-LSGSIP-PSM  301 (356)
Q Consensus       230 ~~~~~L~~L~L~~~~l~-~~~----~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~-~~~  301 (356)
                      .+++.|+.+.++.|... ++.    ...-.....|..+.+++++ +++...+.+..+++|+++++-+|+ ++.+.. .+-
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence            34556666777665532 221    1112334566677777776 344445556666777777777763 332222 222


Q ss_pred             cCcCCCCEE
Q 041463          302 ASLIFMNHL  310 (356)
Q Consensus       302 ~~l~~L~~L  310 (356)
                      .++|++++.
T Consensus       449 ~~lp~i~v~  457 (483)
T KOG4341|consen  449 THLPNIKVH  457 (483)
T ss_pred             hhCccceeh
Confidence            345665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=3.5e-07  Score=66.74  Aligned_cols=114  Identities=25%  Similarity=0.352  Sum_probs=75.9

Q ss_pred             ccccccEEeecCCcccccCchhh-hcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCE
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH  309 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  309 (356)
                      ....|+..+|++|.+.+ +|..| ..++..+.|++++|.|. .+|+.+..++.|+.|+++.|.+. ..|..+..+.++-.
T Consensus        51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            33456668888888874 44444 44567888888888887 67777888888888888888887 56666666777888


Q ss_pred             EEcccCcccccCCCCcccCcCCCccccccCccccCCCCCCCCCCC
Q 041463          310 LNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPEN  354 (356)
Q Consensus       310 L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c~~~  354 (356)
                      |+.-+|.....+.+ --++.+.-+. -.+|     +||.=.|+.+
T Consensus       128 Lds~~na~~eid~d-l~~s~~~al~-~lgn-----epl~~~~~~k  165 (177)
T KOG4579|consen  128 LDSPENARAEIDVD-LFYSSLPALI-KLGN-----EPLGDETKKK  165 (177)
T ss_pred             hcCCCCccccCcHH-HhccccHHHH-HhcC-----CcccccCccc
Confidence            88888877654443 2233332211 1233     7787777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=3.3e-06  Score=49.65  Aligned_cols=37  Identities=43%  Similarity=0.671  Sum_probs=24.1

Q ss_pred             cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463          257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS  294 (356)
Q Consensus       257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~  294 (356)
                      ++|++|++++|+|+ .+|..++.+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777776 45555677777777777777776

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.98  E-value=3.1e-07  Score=67.02  Aligned_cols=98  Identities=29%  Similarity=0.383  Sum_probs=77.7

Q ss_pred             ccEEeecCCccccc--CchhhhcccccCeEEccCCcCcCCCCcCcC-CCCCccEEEccCCcccccCCccccCcCCCCEEE
Q 041463          235 VNLLDLSSTNLSAE--IPAELTSLVHLGTLNLSHNHLVGKIPEEIG-NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN  311 (356)
Q Consensus       235 L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  311 (356)
                      +-.++|+.|.+...  .+..+.....|+.++|++|.+. ..|..|. .++.++.|++++|++. .+|..++.++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            44488889887621  2233445567888899999998 6777665 4568999999999999 7888899999999999


Q ss_pred             cccCcccccCCCCcccCcCCCcc
Q 041463          312 LSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       312 l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      ++.|++...+..+..+.+|-.++
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhc
Confidence            99999998887776677766665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=2.8e-06  Score=81.02  Aligned_cols=59  Identities=25%  Similarity=0.241  Sum_probs=25.7

Q ss_pred             CcccccEEecccccccccccccccCCCCCcEEEcccCcccc-cccccccCCCCCcEEEeecc
Q 041463           77 NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG-SIPESIGSLRTLRFLVLRNN  137 (356)
Q Consensus        77 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~  137 (356)
                      ++|+|+.||++++.++..  .+++.+++|+.|.+.+=.+.. ..-..+.++++|+.|++|..
T Consensus       171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            445555555555544422  334445555555444433331 11122334455555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=4e-06  Score=79.95  Aligned_cols=135  Identities=26%  Similarity=0.342  Sum_probs=77.7

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccC-CcccccEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccccCCC
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIG-NLKQLITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR  127 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  127 (356)
                      -.+|++|++++...-..   .-+..++ .+|.|+.|.+.+-.+... .......+++|..||++++.+...  ..+++++
T Consensus       121 r~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk  195 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLK  195 (699)
T ss_pred             HHhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccc
Confidence            35777778777533211   0111122 367788887777555322 123355678888888888777744  4567777


Q ss_pred             CCcEEEeecccccc-ccCccccCCCCCcEEEecCCcccccC--Cc---hhhcccccceeEEEcccCccc
Q 041463          128 TLRFLVLRNNYLSG-ELPLSLKNCTFMESLDLGDNNLSGNI--PA---WIGASMPGLLHILDLSHNDLS  190 (356)
Q Consensus       128 ~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~--~~---~~~~~~~~~L~~L~l~~~~l~  190 (356)
                      +|+.|.+.+-.+.. .....+..+++|+.||++........  ..   .....+|. |+.||.+++.+.
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe-LrfLDcSgTdi~  263 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE-LRFLDCSGTDIN  263 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc-ccEEecCCcchh
Confidence            88877777765542 12234567788888888776543111  00   11122443 777887777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00029  Score=62.47  Aligned_cols=12  Identities=25%  Similarity=0.182  Sum_probs=6.0

Q ss_pred             CCcEEEeecccc
Q 041463          128 TLRFLVLRNNYL  139 (356)
Q Consensus       128 ~L~~L~l~~~~l  139 (356)
                      +|++|.+++|..
T Consensus       157 SLk~L~Is~c~~  168 (426)
T PRK15386        157 SLKTLSLTGCSN  168 (426)
T ss_pred             cccEEEecCCCc
Confidence            455555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00021  Score=63.26  Aligned_cols=15  Identities=7%  Similarity=-0.046  Sum_probs=6.9

Q ss_pred             CCCCcEEEcccCccc
Q 041463          102 SSFLYILDMSNNSLS  116 (356)
Q Consensus       102 l~~L~~L~l~~~~~~  116 (356)
                      +.++++|++++|.+.
T Consensus        51 ~~~l~~L~Is~c~L~   65 (426)
T PRK15386         51 ARASGRLYIKDCDIE   65 (426)
T ss_pred             hcCCCEEEeCCCCCc
Confidence            344444454444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=5.3e-05  Score=59.37  Aligned_cols=105  Identities=21%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccC-CcccccEEecccccccccc-cccccCCCCC
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIG-NLKQLITLVISNNNLSGEI-PLLFSNSSFL  105 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L  105 (356)
                      .+...++|.+|.+. ....+-.++.|.+|.+.+|.|+..-     ..+. -+++|..|.+.+|.+.... -..+..++.|
T Consensus        42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~-----p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRID-----PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccceecccccchh-hcccCCCccccceEEecCCcceeec-----cchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            56778888888776 5555557888889999988887422     2233 3577888888888876331 2346678889


Q ss_pred             cEEEcccCccccccc---ccccCCCCCcEEEeeccc
Q 041463          106 YILDMSNNSLSGSIP---ESIGSLRTLRFLVLRNNY  138 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~  138 (356)
                      ++|.+-+|.+....-   -.+..+|+|+.|++..-.
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999888888764322   234567888888887643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00012  Score=59.69  Aligned_cols=105  Identities=20%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccc--cccccccccccCCCCCcEEEcccCcccccc-cccccCC
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN--NLSGEIPLLFSNSSFLYILDMSNNSLSGSI-PESIGSL  126 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l  126 (356)
                      +..|+.+++.+..++..      ..+..+|+|+.|.++.|  ++.+-.+.....+++|+++++++|++.... -..+..+
T Consensus        42 ~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            44555555554444310      23555667777777777  444333344445577777777777765311 1223445


Q ss_pred             CCCcEEEeeccccccccC---ccccCCCCCcEEEecC
Q 041463          127 RTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLGD  160 (356)
Q Consensus       127 ~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~  160 (356)
                      .+|..|++.+|..+....   ..+.-+++|++|+-..
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            666677777766553111   1234456666666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=2.5e-05  Score=64.27  Aligned_cols=81  Identities=15%  Similarity=0.095  Sum_probs=48.3

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccc-cccccCCCCCc
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEI-PLLFSNSSFLY  106 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L~  106 (356)
                      .+.+.|+..+|.+.+ +..-..++.|+.|.|+-|+|+.-      ..+..++.|++|+|..|.|.+.. -.++.++++|+
T Consensus        19 ~~vkKLNcwg~~L~D-Isic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD-ISICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHhhhhcccCCCccH-HHHHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            456777777777763 22222566777777777766521      34566677777777777665332 23455666666


Q ss_pred             EEEcccCcc
Q 041463          107 ILDMSNNSL  115 (356)
Q Consensus       107 ~L~l~~~~~  115 (356)
                      .|-|..|+-
T Consensus        92 ~LWL~ENPC  100 (388)
T KOG2123|consen   92 TLWLDENPC  100 (388)
T ss_pred             hHhhccCCc
Confidence            666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.83  E-value=0.0049  Score=45.94  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=34.2

Q ss_pred             cCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCc
Q 041463           28 LTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLY  106 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~  106 (356)
                      .+|+.+.+.. .+.......+ ++++|+.+.+..+ +. .++   ...|..++.++.+.+.. .+.......|..+++|+
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~---~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIG---DNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE----TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccc---eeeeecccccccccccc-ccccccccccccccccc
Confidence            4555555543 2333333333 2445555555543 22 111   12344444555555543 22212233444455555


Q ss_pred             EEEcccCcccccccccccCCCCCcEEEee
Q 041463          107 ILDMSNNSLSGSIPESIGSLRTLRFLVLR  135 (356)
Q Consensus       107 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  135 (356)
                      .+++..+ +.......+.+. +++.+.+.
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            5555433 332333344443 45544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.83  E-value=0.0045  Score=46.16  Aligned_cols=83  Identities=20%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463           75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME  154 (356)
Q Consensus        75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  154 (356)
                      |..+.+|+.+.+.. .+.......|..+.+|+.+++.++ +.......|.++++++.+.+.+ .+.......+..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            44444455554443 233233344445545555555443 3333344444554555555543 22212223344455555


Q ss_pred             EEEecC
Q 041463          155 SLDLGD  160 (356)
Q Consensus       155 ~L~l~~  160 (356)
                      .+++..
T Consensus        85 ~i~~~~   90 (129)
T PF13306_consen   85 NIDIPS   90 (129)
T ss_dssp             EEEETT
T ss_pred             ccccCc
Confidence            555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00065  Score=55.62  Aligned_cols=64  Identities=27%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             ccccccccEEeecCC--cccccCchhhhcccccCeEEccCCcCcCCCCcCc---CCCCCccEEEccCCccc
Q 041463          229 FTTLYLVNLLDLSST--NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI---GNFEWLETLDLSKNKLS  294 (356)
Q Consensus       229 ~~~~~~L~~L~L~~~--~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~L~~n~i~  294 (356)
                      +..+++|++|.++.|  .+.+.+......+|+|+++++++|+|..  ++.+   ..+++|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            344455555555555  3333333333333555555555555431  2222   23344445555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.79  E-value=0.0001  Score=68.59  Aligned_cols=110  Identities=24%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             cccccEEeccccc-cccc-ccccccCCCCCcEEEcccC-cccccc----cccccCCCCCcEEEeeccc-cccccCcccc-
Q 041463           78 LKQLITLVISNNN-LSGE-IPLLFSNSSFLYILDMSNN-SLSGSI----PESIGSLRTLRFLVLRNNY-LSGELPLSLK-  148 (356)
Q Consensus        78 l~~L~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~-  148 (356)
                      ++.|+.+.+..+. +... .......++.|+.|+++++ ......    ......+.+|+.|+++.+. +++.....+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4555555555552 2211 1223445566666666552 111011    1122234556666666555 4433222222 


Q ss_pred             CCCCCcEEEecCCc-ccccCCchhhcccccceeEEEcccCc
Q 041463          149 NCTFMESLDLGDNN-LSGNIPAWIGASMPGLLHILDLSHND  188 (356)
Q Consensus       149 ~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~~~~  188 (356)
                      .+++|+.|.+.++. +++..-..+...++. |++|++++|.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~-L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPS-LRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCc-ccEEeeecCc
Confidence            25566666655554 444443444444443 6666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00024  Score=55.83  Aligned_cols=82  Identities=21%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             ccccEEeecCCcccccCchhhhcccccCeEEccCCc-CcCCCCcCcC-CCCCccEEEccCC-cccccCCccccCcCCCCE
Q 041463          233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH-LVGKIPEEIG-NFEWLETLDLSKN-KLSGSIPPSMASLIFMNH  309 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~-~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~  309 (356)
                      ..++.++-+++.|..+....+..++.++.|.+.+|. +.+...+-++ ..++|+.|+|++| +||+.....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            357889999999887777778888899999999886 3322122222 4689999999999 888777777888899998


Q ss_pred             EEccc
Q 041463          310 LNLSY  314 (356)
Q Consensus       310 L~l~~  314 (356)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            88764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.38  E-value=0.00021  Score=66.54  Aligned_cols=62  Identities=24%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             CCCCCcEEEcccCc-ccccccccccC-CCCCcEEEeeccc-cccccC-ccccCCCCCcEEEecCCc
Q 041463          101 NSSFLYILDMSNNS-LSGSIPESIGS-LRTLRFLVLRNNY-LSGELP-LSLKNCTFMESLDLGDNN  162 (356)
Q Consensus       101 ~l~~L~~L~l~~~~-~~~~~~~~~~~-l~~L~~L~l~~~~-l~~~~~-~~l~~l~~L~~L~l~~~~  162 (356)
                      .+.+|+.++++++. +++..-..+.. +++|+.|.+.++. +++... .....++.|+.|+++++.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            34555555555555 33333222222 4556666655444 332222 122344556666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.00014  Score=59.90  Aligned_cols=83  Identities=23%  Similarity=0.162  Sum_probs=37.8

Q ss_pred             cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccC-CccccCcCCCCEEEc
Q 041463          234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI-PPSMASLIFMNHLNL  312 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l  312 (356)
                      +.++|++-||++.++  .....++.|+.|.|+-|.|+..  ..+..|++|+.|+|..|.|.+.. ..-+.++|+|+.|-|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            444455555555421  1223345555555555555421  23344555555555555554211 112344555555555


Q ss_pred             ccCccccc
Q 041463          313 SYNNLSGE  320 (356)
Q Consensus       313 ~~n~~~~~  320 (356)
                      ..|+-.+.
T Consensus        96 ~ENPCc~~  103 (388)
T KOG2123|consen   96 DENPCCGE  103 (388)
T ss_pred             ccCCcccc
Confidence            55555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.93  E-value=0.0034  Score=30.57  Aligned_cols=12  Identities=67%  Similarity=0.822  Sum_probs=6.6

Q ss_pred             ccEEEccCCccc
Q 041463          283 LETLDLSKNKLS  294 (356)
Q Consensus       283 L~~L~L~~n~i~  294 (356)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.59  E-value=0.02  Score=27.77  Aligned_cols=18  Identities=33%  Similarity=0.303  Sum_probs=14.0

Q ss_pred             CCCEEEcccCcccccCCC
Q 041463          306 FMNHLNLSYNNLSGEIPN  323 (356)
Q Consensus       306 ~L~~L~l~~n~~~~~~~~  323 (356)
                      +|++||+++|+++..++.
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            589999999999944433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.37  E-value=0.026  Score=25.42  Aligned_cols=11  Identities=73%  Similarity=1.002  Sum_probs=3.3

Q ss_pred             ccEEEccCCcc
Q 041463          283 LETLDLSKNKL  293 (356)
Q Consensus       283 L~~L~L~~n~i  293 (356)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.05  E-value=0.00034  Score=64.10  Aligned_cols=185  Identities=25%  Similarity=0.192  Sum_probs=107.1

Q ss_pred             ceEEEcccccccccCCchHHhhc---cCCcEeeccCCccCCcCCCCC-----CC-CCCcEEecCCCcccCcCCCCCCccc
Q 041463            5 LRTLVLNKARISDTIPDWFWQLS---LTLDELDVAYNELRGRVPNSL-----GF-NFPATVDLSSNNFEGRLPLCIPKSI   75 (356)
Q Consensus         5 L~~L~l~~~~i~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~-----~~-~~L~~L~l~~n~~~~~~~~~~~~~~   75 (356)
                      +.+|.|.+|.+.+.....+...+   ++|+.|+++.|.+.+.....+     .. ..+++|++..|.+++.....+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56777788877755444443332   577888888887764322222     11 4566777777777765554455566


Q ss_pred             CCcccccEEecccccccc----ccccccc----CCCCCcEEEcccCcccccc----cccccCCCC-CcEEEeeccccccc
Q 041463           76 GNLKQLITLVISNNNLSG----EIPLLFS----NSSFLYILDMSNNSLSGSI----PESIGSLRT-LRFLVLRNNYLSGE  142 (356)
Q Consensus        76 ~~l~~L~~L~l~~~~i~~----~~~~~~~----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~l~~~~l~~~  142 (356)
                      .....++.++++.|.+..    ..+..+.    ...++++|.+.+|.++...    ...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            667778888888877631    1222222    4667888888887765211    122333334 55577777766533


Q ss_pred             ----cCccccCC-CCCcEEEecCCcccccCCchhhcc---cccceeEEEcccCccc
Q 041463          143 ----LPLSLKNC-TFMESLDLGDNNLSGNIPAWIGAS---MPGLLHILDLSHNDLS  190 (356)
Q Consensus       143 ----~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~  190 (356)
                          ....+..+ ..++.++++.|.+.+.........   .+ .++.+.++.+.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccc
Confidence                22333444 566788888887765544443332   22 3667777766543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.91  E-value=0.081  Score=26.76  Aligned_cols=16  Identities=50%  Similarity=0.536  Sum_probs=9.2

Q ss_pred             CCccEEEccCCccccc
Q 041463          281 EWLETLDLSKNKLSGS  296 (356)
Q Consensus       281 ~~L~~L~L~~n~i~~~  296 (356)
                      ++|++|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666633

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.91  E-value=0.081  Score=26.76  Aligned_cols=16  Identities=50%  Similarity=0.536  Sum_probs=9.2

Q ss_pred             CCccEEEccCCccccc
Q 041463          281 EWLETLDLSKNKLSGS  296 (356)
Q Consensus       281 ~~L~~L~L~~n~i~~~  296 (356)
                      ++|++|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666633

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.85  E-value=0.022  Score=45.09  Aligned_cols=81  Identities=16%  Similarity=0.041  Sum_probs=38.9

Q ss_pred             ccEEecccccccccccccccCCCCCcEEEcccCccc-cccccccc-CCCCCcEEEeecc-ccccccCccccCCCCCcEEE
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS-GSIPESIG-SLRTLRFLVLRNN-YLSGELPLSLKNCTFMESLD  157 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~  157 (356)
                      ++.++-+++.|....-+.+.+++.++.|.+..|.-. +.--..+. -.++|+.|++++| .+++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            445555555554443444455555555555555421 11111111 1346666666665 34444444455566666666


Q ss_pred             ecCC
Q 041463          158 LGDN  161 (356)
Q Consensus       158 l~~~  161 (356)
                      +++=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            5543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.73  E-value=0.0036  Score=50.53  Aligned_cols=86  Identities=22%  Similarity=0.213  Sum_probs=65.3

Q ss_pred             cccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCE
Q 041463          230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH  309 (356)
Q Consensus       230 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  309 (356)
                      ......+.||++.+++. ..-..|..+..+..|+++.|.+. ..|..+.+...+..+++.+|... ..|..+.+.++++.
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            34566777888888776 34445666777888888888887 77888888777888888888777 67777888888888


Q ss_pred             EEcccCccc
Q 041463          310 LNLSYNNLS  318 (356)
Q Consensus       310 L~l~~n~~~  318 (356)
                      +++.++++.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            888888764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.39  E-value=0.061  Score=26.62  Aligned_cols=19  Identities=32%  Similarity=0.396  Sum_probs=10.2

Q ss_pred             cccceEEEcccccccccCC
Q 041463            2 QTELRTLVLNKARISDTIP   20 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~   20 (356)
                      +++|++|+|++|.|++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHH
Confidence            3567777777777765433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.99  E-value=0.0017  Score=59.64  Aligned_cols=168  Identities=22%  Similarity=0.241  Sum_probs=110.8

Q ss_pred             ccceEEEcccccccccCCchHHhhc----cCCcEeeccCCccCCcCCCCC-----CCCCCcEEecCCCcccCcCCCCCCc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLS----LTLDELDVAYNELRGRVPNSL-----GFNFPATVDLSSNNFEGRLPLCIPK   73 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~   73 (356)
                      +.|..|+++.|.+.+.-...+.+..    ..+++|++..|.+++......     ....++.++++.|.+....-..++.
T Consensus       115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~  194 (478)
T KOG4308|consen  115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ  194 (478)
T ss_pred             ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence            5677889999988755444444432    346778888888775543332     4778899999998874332223333


Q ss_pred             ccC----CcccccEEeccccccccc----ccccccCCCC-CcEEEcccCccccc----ccccccCC-CCCcEEEeecccc
Q 041463           74 SIG----NLKQLITLVISNNNLSGE----IPLLFSNSSF-LYILDMSNNSLSGS----IPESIGSL-RTLRFLVLRNNYL  139 (356)
Q Consensus        74 ~~~----~l~~L~~L~l~~~~i~~~----~~~~~~~l~~-L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~l  139 (356)
                      .+.    ...++++|.+.+|.++..    ....+...+. +..+++..|.+.+.    ..+.+..+ +.++.+++..|.+
T Consensus       195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi  274 (478)
T KOG4308|consen  195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI  274 (478)
T ss_pred             hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence            444    467899999999887632    1223445555 77789999887654    22334444 6788999999998


Q ss_pred             ccccC----ccccCCCCCcEEEecCCcccccCCch
Q 041463          140 SGELP----LSLKNCTFMESLDLGDNNLSGNIPAW  170 (356)
Q Consensus       140 ~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~  170 (356)
                      ++...    ..+..++.++.+.+++|.+.+.....
T Consensus       275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~  309 (478)
T KOG4308|consen  275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVEL  309 (478)
T ss_pred             cccchHHHHHHHhhhHHHHHhhcccCccccHHHHH
Confidence            75433    44556778999999999887544433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.23  E-value=0.011  Score=47.89  Aligned_cols=60  Identities=15%  Similarity=0.120  Sum_probs=28.7

Q ss_pred             cccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcc
Q 041463          232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL  293 (356)
Q Consensus       232 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i  293 (356)
                      ++.+..|+++.+.+. -.|..+.....+..+.+.+|... ..|.++...+.++++++.++.+
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            344444555544444 34444444444444444444444 4444555555555555555543

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=83.25  E-value=4.4  Score=36.88  Aligned_cols=13  Identities=31%  Similarity=0.560  Sum_probs=7.2

Q ss_pred             eeEEEcccCcccc
Q 041463          179 LHILDLSHNDLSG  191 (356)
Q Consensus       179 L~~L~l~~~~l~~  191 (356)
                      ++.+....|.+.+
T Consensus       356 ~q~l~~rdnnldg  368 (553)
T KOG4242|consen  356 VQVLLQRDNNLDG  368 (553)
T ss_pred             eeEeecccccccc
Confidence            5666665555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-39
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-39
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-22
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 191/414 (46%), Gaps = 93/414 (22%)
Query: 30  LDELDVAYNELRGRVPNSLGFNFPA---TVDLSSNNFEGRLPLCIPKSIGNLKQ-LITLV 85
           L  LD+++NE  G +P SL  N  A   T+DLSSNNF G +   +P    N K  L  L 
Sbjct: 345 LKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELY 400
Query: 86  ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL------------------- 126
           + NN  +G+IP   SN S L  L +S N LSG+IP S+GSL                   
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 127 -----RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIG--------- 172
                +TL  L+L  N L+GE+P  L NCT +  + L +N L+G IP WIG         
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 173 -------ASMPGLLH------ILDLSHNDLSGFIPPRVGNLSD----------------- 202
                   ++P  L        LDL+ N  +G IP  +   S                  
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 203 --MKVEPP--------KSVQHEGRLRVVTK-----------GSERKYFTTLYLVNLLDLS 241
             MK E          + ++ E   R+ T+           G     F     +  LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
              LS  IP E+ S+ +L  LNL HN + G IP+E+G+   L  LDLS NKL G IP +M
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENG 355
           ++L  +  ++LS NNLSG IP   QF+T   P+ +  N  LCG PLP+  P N 
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPLPRCDPSNA 753

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 191/414 (46%), Gaps = 93/414 (22%)
Query: 30  LDELDVAYNELRGRVPNSLGFNFPA---TVDLSSNNFEGRLPLCIPKSIGNLKQ-LITLV 85
           L  LD+++NE  G +P SL  N  A   T+DLSSNNF G +   +P    N K  L  L 
Sbjct: 342 LKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELY 397
Query: 86  ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSL------------------- 126
           + NN  +G+IP   SN S L  L +S N LSG+IP S+GSL                   
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 127 -----RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIG--------- 172
                +TL  L+L  N L+GE+P  L NCT +  + L +N L+G IP WIG         
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 173 -------ASMPGLLH------ILDLSHNDLSGFIPPRVGNLSD----------------- 202
                   ++P  L        LDL+ N  +G IP  +   S                  
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 203 --MKVEPP--------KSVQHEGRLRVVTK-----------GSERKYFTTLYLVNLLDLS 241
             MK E          + ++ E   R+ T+           G     F     +  LD+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
              LS  IP E+ S+ +L  LNL HN + G IP+E+G+   L  LDLS NKL G IP +M
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENG 355
           ++L  +  ++LS NNLSG IP   QF+T   P+ +  N  LCG PLP+  P N 
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPLPRCDPSNA 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 142/294 (48%), Gaps = 39/294 (13%)
Query: 56  VDLSSNNFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNS 114
           +DLS  N     P  IP S+ NL  L  L I   NNL G IP   +  + L+ L +++ +
Sbjct: 55  LDLSGLNLPKPYP--IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
           +SG+IP+ +  ++TL  L    N LSG LP S+ +   +  +    N +SG IP   G S
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-S 171
Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
              L   + +S N L+G IPP   NL+   V+  +++  EG   V+  GS++        
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML-EGDASVLF-GSDKN------- 222
Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
                              T  +HL   +L+ +  +GK+    G  + L  LDL  N++ 
Sbjct: 223 -------------------TQKIHLAKNSLAFD--LGKV----GLSKNLNGLDLRNNRIY 257
Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLP 348
           G++P  +  L F++ LN+S+NNL GEIP     Q   D S Y  N  LCG PLP
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF-DVSAYANNKCLCGSPLP 310

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 15/243 (6%)
Query: 81  LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS 140
           +  L +++N L    P  F+  S L ILD   NS+S   PE    L  L+ L L++N LS
Sbjct: 27  ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 141 GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNL 200
                +   CT +  LDL  N++   I +    +   L+  LDLSHN LS         L
Sbjct: 87  QISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIK-LDLSHNGLSS------TKL 138
Query: 201 SDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLG 260
                          + +++   SE   F     +  LDLSS  L    P    ++  L 
Sbjct: 139 GTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLF 198
Query: 261 TLNLSHN----HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMN--HLNLSY 314
            L L++     HL  K+  E+ N   ++ L L+ N+L  +   + + L + N   L+LSY
Sbjct: 199 ALLLNNAQLNPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSY 257
Query: 315 NNL 317
           NNL
Sbjct: 258 NNL 260

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  293 bits (753), Expect = 2e-93
 Identities = 116/377 (30%), Positives = 167/377 (44%), Gaps = 37/377 (9%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
            +  L+ L L     +  IP      S  L  L +++N L G +P+SLG +      + L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKL 449

Query: 59  SSNNFEGRLPLC--------------------IPKSIGNLKQLITLVISNNNLSGEIPLL 98
             N  EG +P                      IP  + N   L  + +SNN L+GEIP  
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

Query: 99  FSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL 158
                 L IL +SNNS SG+IP  +G  R+L +L L  N  +G +P ++       S  +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKI 565

Query: 159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLR 218
             N ++G    +I             +  +  G    ++  LS        S        
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV------ 619

Query: 219 VVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIG 278
               G     F     +  LD+S   LS  IP E+ S+ +L  LNL HN + G IP+E+G
Sbjct: 620 --YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 279 NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEG 338
           +   L  LDLS NKL G IP +M++L  +  ++LS NNLSG IP   QF+T   P+ +  
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP-PAKFLN 736

Query: 339 NLALCGDPLPKKCPENG 355
           N  LCG PLP+  P N 
Sbjct: 737 NPGLCGYPLPRCDPSNA 753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  247 bits (633), Expect = 7e-76
 Identities = 88/333 (26%), Positives = 144/333 (43%), Gaps = 31/333 (9%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA---TVD 57
               L+ L L+    S  +P+    LS +L  LD++ N   G +  +L  N       + 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 58  LSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG 117
           L +N F G+    IP ++ N  +L++L +S N LSG IP    + S L  L +  N L G
Sbjct: 401 LQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
            IP+ +  ++TL  L+L  N L+GE+P  L NCT +  + L +N L+G IP WIG  +  
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLEN 515

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT----TLY 233
            L IL LS+N  SG IP  +G+                 L  +   +    F        
Sbjct: 516 -LAILKLSNNSFSGNIPAELGDCR--------------SLIWLDLNTNL--FNGTIPAAM 558

Query: 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN--HLVGKIPEEIGNFEWLETLDLSKN 291
                 +++  ++ +    + +       + + N     G   E++         +++  
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618

Query: 292 KLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
              G   P+  +   M  L++SYN LSG IP  
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  221 bits (566), Expect = 3e-66
 Identities = 95/326 (29%), Positives = 142/326 (43%), Gaps = 44/326 (13%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
             L  L ++    S  IP +    S  L  LD++ N+L G    ++         +++SS
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCS-ALQHLDISGNKLSGDFSRAIS-TCTELKLLNISS 256

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSGSI 119
           N F G +P         LK L  L ++ N  +GEIP  L      L  LD+S N   G++
Sbjct: 257 NQFVGPIPPL------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPL-SLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
           P   GS   L  L L +N  SGELP+ +L     ++ LDL  N  SG +P  +  ++   
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSAS 369

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
           L  LDLS N+ SG I P +                                     +  L
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNP------------------------------KNTLQEL 399

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
            L +   + +IP  L++   L +L+LS N+L G IP  +G+   L  L L  N L G IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 299 PSMASLIFMNHLNLSYNNLSGEIPNT 324
             +  +  +  L L +N+L+GEIP+ 
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSG 485

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  207 bits (529), Expect = 6e-61
 Identities = 89/328 (27%), Positives = 138/328 (42%), Gaps = 46/328 (14%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNELRGRVPNSLGFNFP--ATVDLS 59
             L +L L++  +S  +       S + L  L+V+ N L      S G        +DLS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
           +N+  G   +    S     +L  L IS N +SG++ +  S    L  LD+S+N+ S  I
Sbjct: 160 ANSISGANVVGWVLS-DGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI 216

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
           P  +G    L+ L +  N LSG+   ++  CT ++ L++  N   G IP     S    L
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS----L 271

Query: 180 HILDLSHNDLSGFIPPRV-GNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
             L L+ N  +G IP  + G    +                                  L
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTG--------------------------------L 299

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE-IGNFEWLETLDLSKNKLSGSI 297
           DLS  +    +P    S   L +L LS N+  G++P + +     L+ LDLS N+ SG +
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

Query: 298 PPSMASL-IFMNHLNLSYNNLSGEIPNT 324
           P S+ +L   +  L+LS NN SG I   
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  203 bits (519), Expect = 2e-59
 Identities = 98/332 (29%), Positives = 144/332 (43%), Gaps = 53/332 (15%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLS--LTLDELDVAYNELRGRVPNSLGFNFPA--TV 56
               L  L L+   IS      +        L  L ++ N++ G V  S          +
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RCVNLEFL 205

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           D+SSNNF   +P      +G+   L  L IS N LSG+     S  + L +L++S+N   
Sbjct: 206 DVSSNNFSTGIP-----FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLK-NCTFMESLDLGDNNLSGNIPAWIGASM 175
           G IP     L++L++L L  N  +GE+P  L   C  +  LDL  N+  G +P + G S 
Sbjct: 261 GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SC 317

Query: 176 PGLLHILDLSHNDLSGFIPPRV-GNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
             L   L LS N+ SG +P      +  +KV                             
Sbjct: 318 SLLES-LALSSNNFSGELPMDTLLKMRGLKV----------------------------- 347

Query: 235 VNLLDLSSTNLSAEIPAELTSL-VHLGTLNLSHNHLVGKIPEEIGNFEW--LETLDLSKN 291
              LDLS    S E+P  LT+L   L TL+LS N+  G I   +       L+ L L  N
Sbjct: 348 ---LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 292 KLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
             +G IPP++++   +  L+LS+N LSG IP+
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  197 bits (502), Expect = 4e-57
 Identities = 84/325 (25%), Positives = 134/325 (41%), Gaps = 47/325 (14%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
           T +             +      L+  L+ L ++ + + G V          ++DLS N+
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLT-GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSGSIPE 121
             G +      S+G+   L  L +S+N L     +      + L +LD+S NS+SG+   
Sbjct: 112 LSGPVT--TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 122 SI---GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
                     L+ L +  N +SG++ +S   C  +E LD+  NN S  IP ++G      
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDC--SA 224

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
           L  LD+S N LSG     +   +++K+                                L
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKL--------------------------------L 252

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSI 297
           ++SS      IP     L  L  L+L+ N   G+IP+ + G  + L  LDLS N   G++
Sbjct: 253 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 298 PPSMASLIFMNHLNLSYNNLSGEIP 322
           PP   S   +  L LS NN SGE+P
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  193 bits (492), Expect = 1e-55
 Identities = 86/330 (26%), Positives = 141/330 (42%), Gaps = 52/330 (15%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGF-NFPA--TVDLS 59
           T L +L L+ + I+ ++   F   + +L  LD++ N L G V       +      +++S
Sbjct: 77  TGLESLFLSNSHINGSVSG-FKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP---LLFSNSSFLYILDMSNNSLS 116
           SN  +    +        L  L  L +S N++SG      +L      L  L +S N +S
Sbjct: 135 SNTLDFPGKV---SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
           G +   +     L FL + +N  S  +P  L +C+ ++ LD+  N LSG+    I     
Sbjct: 192 GDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC-- 246

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
             L +L++S N   G IPP    L  ++                                
Sbjct: 247 TELKLLNISSNQFVGPIPP--LPLKSLQY------------------------------- 273

Query: 237 LLDLSSTNLSAEIPAELT-SLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
            L L+    + EIP  L+ +   L  L+LS NH  G +P   G+   LE+L LS N  SG
Sbjct: 274 -LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 296 SIPP-SMASLIFMNHLNLSYNNLSGEIPNT 324
            +P  ++  +  +  L+LS+N  SGE+P +
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  176 bits (449), Expect = 1e-49
 Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 43/273 (15%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
           ++DLSS          +  S+ +L  L +L +SN++++G +   F  S+ L  LD+S NS
Sbjct: 54  SIDLSSKPLNVGFSA-VSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 115 LSGSIPE--SIGSLRTLRFLVLRNNYLSGELPLS-LKNCTFMESLDLGDNNLSGNIPAWI 171
           LSG +    S+GS   L+FL + +N L     +S       +E LDL  N++SG      
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 172 GA-SMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230
                 G L  L +S N +SG +   V    +++                          
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEF------------------------- 204

Query: 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK 290
                  LD+SS N S  IP  L     L  L++S N L G     I     L+ L++S 
Sbjct: 205 -------LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 291 NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
           N+  G IPP    L  + +L+L+ N  +GEIP+
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  158 bits (403), Expect = 2e-43
 Identities = 58/254 (22%), Positives = 104/254 (40%), Gaps = 39/254 (15%)

Query: 77  NLKQLITLVISNNNLS---GEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
              ++ ++ +S+  L+     +     + + L  L +SN+ ++GS+        +L  L 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 134 LRNNYLSGELP--LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSG 191
           L  N LSG +    SL +C+ ++ L++  N L        G  +  L   LDLS N +SG
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-LDLSANSISG 165

Query: 192 FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPA 251
                                    L+                   L +S   +S ++  
Sbjct: 166 ANVVGWVLSDGCG-----------ELKH------------------LAISGNKISGDVD- 195

Query: 252 ELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN 311
            ++  V+L  L++S N+    IP  +G+   L+ LD+S NKLSG    ++++   +  LN
Sbjct: 196 -VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 312 LSYNNLSGEIPNTN 325
           +S N   G IP   
Sbjct: 254 ISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 258 HLGTLNLSHNHL---VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY 314
            + +++LS   L      +   + +   LE+L LS + ++GS+         +  L+LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 315 NNLSGEIPNTNQFQTL 330
           N+LSG +       + 
Sbjct: 110 NSLSGPVTTLTSLGSC 125

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  248 bits (635), Expect = 9e-81
 Identities = 97/352 (27%), Positives = 152/352 (43%), Gaps = 49/352 (13%)

Query: 1   NQTELRTLVLNKARISD--TIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV-D 57
           N  + + L+  K  + +  T+  W       L   D       G + ++    +     D
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSW-------LPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 58  LSSNNFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           LS  N     P  IP S+ NL  L  L I   NNL G IP   +  + L+ L +++ ++S
Sbjct: 57  LSGLNLPKPYP--IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
           G+IP+ +  ++TL  L    N LSG LP S+ +   +  +    N +SG IP   G S  
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFS 173

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
            L   + +S N L+G IPP   NL+                                 + 
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLN---------------------------------LA 200

Query: 237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
            +DLS   L  +      S  +   ++L+ N L   +  ++G  + L  LDL  N++ G+
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259

Query: 297 IPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLP 348
           +P  +  L F++ LN+S+NNL GEIP     Q  +  + Y  N  LCG PLP
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.2 bits (160), Expect = 4e-12
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 5   LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP-ATVDLSSNNF 63
             ++ +++ R++  IP  F  L+L    +D++ N L G      G +     + L+ N+ 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLNLA--FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 64  EGRLPL-------------------CIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSF 104
              L                      +P+ +  LK L +L +S NNL GEIP   +   F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 105 LYILDMSNNSLSGSIPES 122
                 +N  L GS   +
Sbjct: 294 DVSAYANNKCLCGSPLPA 311

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  149 bits (378), Expect = 2e-40
 Identities = 56/347 (16%), Positives = 111/347 (31%), Gaps = 59/347 (17%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA-------- 54
            +L  + +        +P +   L   +  ++VA N           +   A        
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 55  -TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNN 113
             + +  NN +      +  S+  +K+L  L    N L G++P  F +   L  L+++ N
Sbjct: 308 QIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYN 363

Query: 114 SLSGSIPESIGSLRTLRFLVLRNNYLSGELP--LSLKNCTFMESLDLGDNNLSGNIPAWI 171
            ++       G    +  L   +N L   +P     K+ + M ++D   N +        
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 172 GASMPGL-----LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
               P       +  ++LS+N +S F        S +                       
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL----------------------- 459

Query: 227 KYFTTLYLV-NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI--GNFEWL 283
              +++ L+ N+L     N   +      +   L +++L  N L   + ++       +L
Sbjct: 460 ---SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYL 515

Query: 284 ETLDLSKNKLSGSIPPSMAS------LIFMNHLNLSYNNLSGEIPNT 324
             +DLS N  S   P    +          N  +   N    E P  
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (360), Expect = 7e-38
 Identities = 59/323 (18%), Positives = 105/323 (32%), Gaps = 54/323 (16%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           ++ +L +L L   +I+  IP  F   +  ++ L  A+N+L+         +      +D 
Sbjct: 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

Query: 59  SSNNFEGRLPLC---IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSL 115
           S N            +  +      + ++ +SNN +S     LFS  S L  +++  N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 116 SGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM 175
           +     S+                      + KN   + S+DL  N L+     +   ++
Sbjct: 470 TEIPKNSLKD-----------------ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 176 PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV 235
           P  L  +DLS+N  S   P +  N S                                + 
Sbjct: 513 PY-LVGIDLSYNSFSK-FPTQPLNSST--------------------------LKGFGIR 544

Query: 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
           N  D        E P  +T    L  L +  N +   + E+I     +  LD+  N    
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNIS 601

Query: 296 SIPPSMASLIFMNHLNLSYNNLS 318
                +   I      L Y+   
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (347), Expect = 3e-36
 Identities = 43/342 (12%), Positives = 103/342 (30%), Gaps = 64/342 (18%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
              +   +      I+  +     +L+  L +  +  +            N     +   
Sbjct: 181 ITLKDTQIGQLSNNIT-FVSKAVMRLT-KLRQFYMGNSPFVAENICEAWEN----ENSEY 234

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSL----- 115
                   L       NLK L  + + N     ++P        + +++++ N       
Sbjct: 235 AQQYKTEDL----KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 116 ---SGSIPESIGSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSGNIPAWI 171
                           ++ + +  N L +  +  SL+    +  L+   N L G +PA+ 
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350

Query: 172 GASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTT 231
                  L  L+L++N ++       G    ++                           
Sbjct: 351 SEIK---LASLNLAYNQITEIPANFCGFTEQVEN-------------------------- 381

Query: 232 LYLVNLLDLSSTNLSAEIPA--ELTSLVHLGTLNLSHNHLVG-------KIPEEIGNFEW 282
                 L  +   L   IP   +  S+  +  ++ S+N +          +         
Sbjct: 382 ------LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 283 LETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
           + +++LS N++S       ++   ++ +NL  N L+    N+
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (340), Expect = 4e-35
 Identities = 38/306 (12%), Positives = 93/306 (30%), Gaps = 54/306 (17%)

Query: 30  LDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVIS 87
           +  L +      GRVP+++G        + L S+  +    L  PK I            
Sbjct: 83  VTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 88  NNNLSGEIP--LLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPL 145
             +            + S L    ++++    SI +S         +   +N ++  +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 146 SLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKV 205
           ++   T +    +G++                     +  +         +  NL D+  
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENI-------CEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 206 EPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265
                                           +++ +     ++P  L +L  +  +N++
Sbjct: 254 --------------------------------VEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 266 HNHLV--------GKIPEEIGNFEWLETLDLSKNKL-SGSIPPSMASLIFMNHLNLSYNN 316
            N  +         +   +    E ++ + +  N L +  +  S+  +  +  L   YN 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 317 LSGEIP 322
           L G++P
Sbjct: 342 LEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  130 bits (330), Expect = 7e-34
 Identities = 50/335 (14%), Positives = 104/335 (31%), Gaps = 55/335 (16%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNELRGRVPNSLGFNFPATV-DL 58
                      +     T  D+  +   + L +  +  +  +  +  S       T    
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
            SNN        + K++  L +L    + N+    E       +               +
Sbjct: 191 LSNNITF-----VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKT 240

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL-SGNIPAWIGASMPG 177
                 +L+ L  + + N     +LP  LK    M+ +++  N   SG        ++  
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 178 L-----LHILDLSHNDL-SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTT 231
                 + I+ + +N+L +  +   +  +  + +                          
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM-------------------------- 334

Query: 232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN 291
                 L+     L  ++P    S + L +LNL++N +        G  E +E L  + N
Sbjct: 335 ------LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 292 KLSGSIPP--SMASLIFMNHLNLSYNNLSGEIPNT 324
           KL   IP      S+  M+ ++ SYN +       
Sbjct: 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  116 bits (292), Expect = 1e-28
 Identities = 25/283 (8%), Positives = 70/283 (24%), Gaps = 59/283 (20%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG----EIPLLFSNSSFLYILDMSN 112
            L      GR    +P +IG L +L  L + ++          P   S +          
Sbjct: 87  SLEGFGASGR----VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 113 NSLSGSIPESIGSLRT--LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW 170
                +  +         L    + ++     +  S +       +    NN++  +   
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 171 IGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230
           +   +  L     + ++                                           
Sbjct: 202 VM-RLTKLRQ-FYMGNSPFVAENICEAWEN------------------------------ 229

Query: 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK 290
                   +            +  +L  L  + + +   + K+P  +     ++ ++++ 
Sbjct: 230 -------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 291 NKL--------SGSIPPSMASLIFMNHLNLSYNNL-SGEIPNT 324
           N+                      +  + + YNNL +  +  +
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (266), Expect = 2e-25
 Identities = 29/272 (10%), Positives = 71/272 (26%), Gaps = 56/272 (20%)

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG----E 142
             +    +  +  +++  +  L +     SG +P++IG L  L  L L ++         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSD 202
            P  +      E       +       +        L    ++ +     I         
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 203 MKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTL 262
                                              +   S N++  +   +  L  L   
Sbjct: 185 D--------------------------------TQIGQLSNNIT-FVSKAVMRLTKLRQF 211

Query: 263 NLSHNHLVGK-------------------IPEEIGNFEWLETLDLSKNKLSGSIPPSMAS 303
            + ++  V +                      +  N + L  +++        +P  + +
Sbjct: 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 304 LIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSI 335
           L  M  +N++ N         + +Q L D  +
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPV 303

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 30/239 (12%), Positives = 64/239 (26%), Gaps = 18/239 (7%)

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLS 146
            N +  G      +N +F   LDM           S+ S   +  L L     SG +P +
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSLNSNGRVTGLSLEGFGASGRVPDA 100

Query: 147 LKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMK 204
           +   T +E L LG +    N   +    +                               
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF-- 158

Query: 205 VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL 264
                 +  +       + S +K          +   S N++  +   +  L  L    +
Sbjct: 159 ----SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYM 213

Query: 265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
            ++  V +   E          +    +   +      +L  +  + +       ++P 
Sbjct: 214 GNSPFVAENICEAWE-----NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 22/160 (13%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNELRGRVPNSLG-------FNFPA 54
             L ++ L   +++  + D F   +L  L  +D++YN      P           F    
Sbjct: 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
             D   N          P+ I     L  L I +N++      +  N   + +LD+ +N 
Sbjct: 546 QRDAQGNRTLRE----WPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNP 598

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME 154
                   +         +L  +         ++ C  ++
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQ-----DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 252 ELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG----SIPPSMASLIFM 307
            L S   +  L+L      G++P+ IG    LE L L  +          P  +++ +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 308 NHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCPENGG 356
                   +      + +  +  +D         +  DP  K   ++  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLI----KDCINSDPQQKSIKKSSR 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (374), Expect = 1e-39
 Identities = 69/359 (19%), Positives = 118/359 (32%), Gaps = 38/359 (10%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
           ++L +L +    IS   P+   +L   L  L++ +NEL      +          + L S
Sbjct: 49  SQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMS 106

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N+ +              K LITL +S+N LS            L  L +SNN +     
Sbjct: 107 NSIQK----IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 121 ESIGSL--RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
           E +      +L+ L L +N +    P        +  L L +  L  ++   +   +   
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

Query: 179 -LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVT------KGSERKYFTT 231
            +  L LS++ LS         L                L ++              F  
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWT------------NLTMLDLSYNNLNVVGNDSFAW 270

Query: 232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN---------HLVGKIPEEIGNFEW 282
           L  +    L   N+       L  L ++  LNL  +          L           + 
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 283 LETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLA 341
           LE L++  N + G        LI + +L+LS +  S        F +L    ++  NL 
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (367), Expect = 1e-38
 Identities = 58/341 (17%), Positives = 108/341 (31%), Gaps = 40/341 (11%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA-----T 55
               L  L +    I     + F  L   L  L ++ +    R   +  F   A      
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 56  VDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP-LLFSNSSFLYILDMSNNS 114
           ++L+ N            +   L  L  L +  N +  E+    +     ++ + +S N 
Sbjct: 386 LNLTKNKISKI----ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSG--ELPLSLKNCTFMESLDLGDNNLSGNIPAWIG 172
                  S   + +L+ L+LR   L      P   +    +  LDL +NN++      + 
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 173 ASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL 232
             +  L  ILDL HN+L+                P   ++    L +             
Sbjct: 502 -GLEKL-EILDLQHNNLARLWKHANPGG------PIYFLKGLSHLHI------------- 540

Query: 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK 292
                L+L S             L  L  ++L  N+L         N   L++L+L KN 
Sbjct: 541 -----LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 293 LSGSIPPSMA-SLIFMNHLNLSYNNLSGEIPNTNQFQTLND 332
           ++         +   +  L++ +N       +   F    +
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  142 bits (359), Expect = 1e-37
 Identities = 60/329 (18%), Positives = 111/329 (33%), Gaps = 48/329 (14%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
                   +  +++  +PD    L   +  L++ +N+LR     +    +    ++D+  
Sbjct: 4   VSHEVADCSHLKLT-QVPDD---LPTNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGF 58

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N          P+    L  L  L + +N LS      F+  + L  L + +NS+     
Sbjct: 59  NTISKL----EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180
                 + L  L L +N LS     +      ++ L L +N +       +       L 
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240
            L+LS N +  F P     +  +                                  L L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFG--------------------------------LFL 202

Query: 241 SSTNLSAEIPAELT---SLVHLGTLNLSHNHLVGKIPEEIGNFEW--LETLDLSKNKLSG 295
           ++  L   +  +L    +   +  L+LS++ L           +W  L  LDLS N L+ 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 296 SIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
               S A L  + +  L YNN+     ++
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (355), Expect = 4e-37
 Identities = 68/350 (19%), Positives = 119/350 (34%), Gaps = 59/350 (16%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAT----V 56
             + L+ L L+  +I +  P  F  +   L  L +   +L   +   L      T    +
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 57  DLSSNNFEGRLPLCIPKSIGNLK--QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            LS++            +   LK   L  L +S NNL+      F+    L    +  N+
Sbjct: 228 SLSNSQLST----TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGEL---------PLSLKNCTFMESLDLGDNNLSG 165
           +      S+  L  +R+L L+ ++    +           S +    +E L++ DN++ G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 166 NIPAWIGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKG 223
                      GL  L  L LS++  S                                 
Sbjct: 344 IKSNMFT----GLINLKYLSLSNSFTSLRTLT---------------------------- 371

Query: 224 SERKYFTTLYLVNL--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP-EEIGNF 280
              + F +L    L  L+L+   +S       + L HL  L+L  N +  ++  +E    
Sbjct: 372 --NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 281 EWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
           E +  + LS NK       S A +  +  L L    L     + + FQ L
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  139 bits (353), Expect = 8e-37
 Identities = 59/326 (18%), Positives = 101/326 (30%), Gaps = 35/326 (10%)

Query: 5   LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNN 62
                ++ A +       F  L   L+ L++  N++ G   N           + LS++ 
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSF 364

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-E 121
              R              L  L ++ N +S      FS    L +LD+  N +   +  +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 122 SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG-NIPAWIGASMPGLLH 180
               L  +  + L  N        S      ++ L L    L   +        +  L  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-T 483

Query: 181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV--NLL 238
           ILDLS+N+++      +  L  +++                          L L   NL 
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEI--------------------------LDLQHNNLA 517

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
            L            L  L HL  LNL  N       E   +   L+ +DL  N L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 299 PSMASLIFMNHLNLSYNNLSGEIPNT 324
               + + +  LNL  N ++      
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKV 603

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  142 bits (359), Expect = 1e-37
 Identities = 59/357 (16%), Positives = 118/357 (33%), Gaps = 56/357 (15%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGF-NFPATV--- 56
           N  +L  + L        +PD+ + L   L  L++A N           +          
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 57  ------DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM 110
                  +  NN E         S+  + +L  L   +N +   +   F  +  L  L +
Sbjct: 548 PKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602

Query: 111 SNNSLSGSIPESIGS-LRTLRFLVLRNNYLSGELP--LSLKNCTFMESLDLGDNNLSGNI 167
             N +   IPE   +    +  L   +N L   +P   + K+   M S+D   N +    
Sbjct: 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-E 659

Query: 168 PAWIGASMPGL----LHILDLSHNDLSGFIPPRVGNLSDMKV---------EPPKSVQHE 214
              I  SM          + LS+N++  F        S +             P++    
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL-- 717

Query: 215 GRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL--TSLVHLGTLNLSHNHLVGK 272
                     +   +   YL+  +DL    L+  +  +   T+L +L  +++S+N     
Sbjct: 718 --------KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SS 767

Query: 273 IPEEIGNFEWLETLDLSK------NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
            P +  N   L+   +        N++    P  + +   +  L +  N++  ++  
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (322), Expect = 1e-32
 Identities = 54/352 (15%), Positives = 112/352 (31%), Gaps = 71/352 (20%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
           T+L+ +    +  +          ++  ++ +  Y +       S   N      V+L +
Sbjct: 448 TKLQIIYFANSPFTYDNI------AVDWEDANSDYAKQYENEELSWS-NLKDLTDVELYN 500

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG---------EIPLLFSNSSFLYILDMS 111
                +    +P  + +L +L +L I+ N              +         + I  M 
Sbjct: 501 CPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 112 NNSLSGSIPE-SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW 170
            N+L       S+  +  L  L   +N +   L  +      +  L L  N +   IP  
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED 613

Query: 171 IGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230
             A     +  L  SHN L   IP                                    
Sbjct: 614 FCAFTD-QVEGLGFSHNKLKY-IPNIFN------------------------------AK 641

Query: 231 TLYLVNLLDLSSTNLSAEIPAELTSL-----VHLGTLNLSHNHLVGKIPEEIGNFEWLET 285
           ++Y++  +D S   + +E      S+     ++  T+ LS+N +     E       + T
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 286 LDLSKNKLS-------GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
           + LS N ++            +  +   +  ++L +N L+  + +  +  TL
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (310), Expect = 4e-31
 Identities = 61/370 (16%), Positives = 108/370 (29%), Gaps = 71/370 (19%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
            +         K RI       F      L+  D+  + +  R P        + + L  
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKD 427

Query: 61  NNFEGRLPL--CIPKSIGNLKQLITLVISNNNLSGEIPLL-------------------F 99
                       I K+I  L +L  +  +N+  + +   +                   +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 100 SNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG---------ELPLSLKNC 150
           SN   L  +++ N      +P+ +  L  L+ L +  N              L       
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 151 TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKV----- 205
             ++   +G NNL    PA         L +LD  HN +        G    +       
Sbjct: 548 PKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDY 604

Query: 206 ----EPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP--AELTSLVHL 259
               E P+                         V  L  S   L   IP      S+  +
Sbjct: 605 NQIEEIPEDF-----------------CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646

Query: 260 GTLNLSHNHLVGKIPEEIG------NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313
           G+++ S+N + G     I             T+ LS N++        A+   ++ + LS
Sbjct: 647 GSVDFSYNKI-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 314 YNNLSGEIPN 323
            N ++  IP 
Sbjct: 706 NNLMT-SIPE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (304), Expect = 3e-30
 Identities = 43/334 (12%), Positives = 100/334 (29%), Gaps = 75/334 (22%)

Query: 30  LDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVIS 87
           L +L + YN++   +P            +  S N  +    +    +  ++  + ++  S
Sbjct: 597 LTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVYVMGSVDFS 652

Query: 88  NNNLSGEIPLLFSNSSF-----LYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS-- 140
            N +  E   +  +           + +S N +     E   +   +  ++L NN ++  
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 141 -----GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPP 195
                     + KN   + ++DL  N L+  +     A+    L  +D+S+N  S   P 
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 196 RVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTS 255
           +  N S                                                   L +
Sbjct: 771 QPLNSSQ--------------------------------------------------LKA 780

Query: 256 LVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN 315
                  +   N ++ + P  I     L  L +  N +   +   +     +  L+++ N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADN 837

Query: 316 NL-SGEIPNTNQFQTLNDPS-IYEGNLALCGDPL 347
              S ++ +   +        +Y+    + G   
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (295), Expect = 4e-29
 Identities = 56/356 (15%), Positives = 108/356 (30%), Gaps = 59/356 (16%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           N   +  L L        +PD   QL+  L  L    +                 +    
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 61  NNF----EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
            +       ++ L   + +     L   +  N  +         +     I +++N    
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--I 437

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSG-------------------ELPLSLKNCTFMESLD 157
             I ++I  L  L+ +   N+  +                       LS  N   +  ++
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRL 217
           L +      +P ++   +P  L  L+++ N           + + +            ++
Sbjct: 498 LYNCPNMTQLPDFLY-DLPE-LQSLNIACNRGIS-AAQLKADWTRL----ADDEDTGPKI 550

Query: 218 RVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE--LTSLVHLGTLNLSHNHLVGKIPE 275
           ++                    +   NL  E PA   L  +V LG L+  HN +  +  E
Sbjct: 551 QI------------------FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV--RHLE 589

Query: 276 EIGNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
             G    L  L L  N++   IP    A    +  L  S+N L   IPN    +++
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (250), Expect = 3e-23
 Identities = 33/263 (12%), Positives = 75/263 (28%), Gaps = 42/263 (15%)

Query: 74  SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
            + N  ++  L ++     G +P      + L +L    +S + S         T     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 134 LRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS-- 190
            R + +      + L     +   DL  + ++ N P          + + D    +L+  
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN-PEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 191 -GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI 249
             FI   +  L+ +++                                +  +++  + + 
Sbjct: 437 ITFISKAIQRLTKLQI--------------------------------IYFANSPFTYDN 464

Query: 250 PAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH 309
            A     V     N  +            N + L  ++L        +P  +  L  +  
Sbjct: 465 IA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 310 LNLSYNNLSGEIPNTNQFQTLND 332
           LN++ N           +  L D
Sbjct: 520 LNIACNRGISAAQLKADWTRLAD 542

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 10/75 (13%), Positives = 25/75 (33%)

Query: 249 IPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMN 308
              +L +   +  L+L+     G++P+ IG    L+ L    +  + S        +  +
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 309 HLNLSYNNLSGEIPN 323
                 + +      
Sbjct: 375 MSEERKHRIRMHYKK 389

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  133 bits (336), Expect = 1e-34
 Identities = 59/313 (18%), Positives = 101/313 (32%), Gaps = 48/313 (15%)

Query: 15  ISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKS 74
             D I D F  L+  +    +    +      S  F +   ++L +  F     L     
Sbjct: 270 YLDDIIDLFNCLT-NVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNCKFGQFPTL----- 322

Query: 75  IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS--GSIPESIGSLRTLRFL 132
              LK L  L  ++N           +   L  LD+S N LS  G   +S     +L++L
Sbjct: 323 --KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF 192
            L  N +   +  +      +E LD   +NL       +  S+  L++ LD+SH      
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVA 436

Query: 193 IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE 252
                  LS ++V                                L ++  +       +
Sbjct: 437 FNGIFNGLSSLEV--------------------------------LKMAGNSFQENFLPD 464

Query: 253 -LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN 311
             T L +L  L+LS   L    P    +   L+ L++S N            L  +  L+
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 312 LSYNNLSGEIPNT 324
            S N++       
Sbjct: 525 YSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (318), Expect = 3e-32
 Identities = 69/347 (19%), Positives = 125/347 (36%), Gaps = 32/347 (9%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           + + L TL+L    I       F  LS +L +L      L       +G +      +++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIG-HLKTLKELNV 131

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSN----SSFLYILDMSNNS 114
           + N  +      +P+   NL  L  L +S+N +                    LD+S N 
Sbjct: 132 AHNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSG--NIPAWI 171
           ++   P +   +R L  L LRNN+ S  +    ++    +E   L         N+  + 
Sbjct: 189 MNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 172 GASMPGL----LHILDLSHNDLSGFIPPRVG---------NLSDMKVEPPKSVQHEGRLR 218
            +++ GL    +    L++ D        +          +L  + +E  K   +    +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 219 VVT-KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL--VGKIPE 275
            +     +   F TL L +L  L+ T+           L  L  L+LS N L   G   +
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 276 EIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322
                  L+ LDLS N +   +  +   L  + HL+  ++NL     
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (315), Expect = 7e-32
 Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 20/282 (7%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           DLS N            S  +  +L  L +S   +       + + S L  L ++ N + 
Sbjct: 34  DLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                +   L +L+ LV     L+      + +   ++ L++  N +         +++ 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
             L  LDLS N +       +  L  M +           +  +  G+    F  + L  
Sbjct: 150 N-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHK 204

Query: 237 LLDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHLVGKIPEE---IGNFEWLETLDLSKNK 292
            L L +   S  +    +  L  L    L       +   E       E L  L + + +
Sbjct: 205 -LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 293 LS------GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ 328
           L+        I      L  ++  +L    +      +  F 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (310), Expect = 3e-31
 Identities = 69/339 (20%), Positives = 108/339 (31%), Gaps = 31/339 (9%)

Query: 26  LSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83
           L  +   LD+++N LR     S   +FP    +DLS    +         +  +L  L T
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTI----EDGAYQSLSHLST 80

Query: 84  LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYL-SGE 142
           L+++ N +       FS  S L  L     +L+      IG L+TL+ L + +N + S +
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIG--ASMPGLLHILDLSHNDLSGFIPPRVGN- 199
           LP    N T +E LDL  N +       +     MP L   LDLS N ++   P      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 200 ------LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
                 L +              L                LV     +  NL     + L
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAG---------LEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 254 TSLVHLGTLNLSHNHL---VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL 310
             L +L        +L   +  I +       + +  L    +      S        HL
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHL 309

Query: 311 NLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPK 349
            L             +       +  +G  A     LP 
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (304), Expect = 2e-30
 Identities = 69/356 (19%), Positives = 117/356 (32%), Gaps = 33/356 (9%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV-DLS 59
           +  EL+ L L++  I       +  LS  L  L +  N ++     +             
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNL-SGEIPLLFSNSSFLYILDMSNNSLSGS 118
             N            IG+LK L  L +++N + S ++P  FSN + L  LD+S+N +   
Sbjct: 109 ETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 119 IPESIGSLRTLRF----LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
               +  L  +      L L  N ++   P + K       L L +N  S N+       
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL-HKLTLRNNFDSLNVMKTCIQG 223

Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQH-EGRLRVVTKGSERKYFTTLY 233
           + G L +  L   +          + S ++     +++                 F  L 
Sbjct: 224 LAG-LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 234 LVNLLDLSSTNLSAEIP-AELTSLVHL----------------GTLNLSHNHLVGKIPEE 276
            V+   L S  +      +      HL                    L+     G     
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 277 IGNFEWLETLDLSKNKLS--GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
             +   LE LDLS+N LS  G    S      + +L+LS+N +     N    + L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (272), Expect = 3e-26
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 10/194 (5%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
             T L+ L L+   +     ++     L    LD  ++ L+     S+  +      +D+
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLE--HLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEI-PLLFSNSSFLYILDMSNNSLSG 117
           S  +               L  L  L ++ N+      P +F+    L  LD+S   L  
Sbjct: 429 SHTHTRV----AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
             P +  SL +L+ L + +N          K    ++ LD   N++  +    +    P 
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPS 543

Query: 178 LLHILDLSHNDLSG 191
            L  L+L+ ND + 
Sbjct: 544 SLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
              ++L+   +   +P           L+LS N L         +F  L+ LDLS+ ++ 
Sbjct: 12  YQCMELNFYKIPDNLPFSTK------NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
                +  SL  ++ L L+ N +       
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           + + L+ L ++           +  L+ +L  LD + N +       L     +   ++L
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL 105
           + N+F           +  +K    L++    +    P        L
Sbjct: 551 TQNDFACTCEH--QSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (334), Expect = 2e-34
 Identities = 70/331 (21%), Positives = 118/331 (35%), Gaps = 48/331 (14%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLS-LTLDELDVAYNELRGRVPNSLGFNFPA--TVDLS 59
             L           D  P  F  L  ++++ +++  +       N+    F     +DL+
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQELDLT 286

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
           + +        +P  +  L  L  LV+S N       +  SN   L  L +  N+    +
Sbjct: 287 ATHLSE-----LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 120 -PESIGSLRTLRFLVLRNNYL--SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
               + +L  LR L L ++ +  S    L L+N + ++SL+L  N    ++        P
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECP 400

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
             L +LDL+   L                                       F  L+L+ 
Sbjct: 401 Q-LELLDLAFTRLKVKDAQSP-------------------------------FQNLHLLK 428

Query: 237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEW---LETLDLSKNKL 293
           +L+LS + L          L  L  LNL  NH      ++  + +    LE L LS   L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 294 SGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
           S     +  SL  MNH++LS+N L+      
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  126 bits (318), Expect = 2e-32
 Identities = 70/331 (21%), Positives = 113/331 (34%), Gaps = 49/331 (14%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLS 59
           +  + ++ L K    +   + F   S  L ELD+    L   +P+ L         + LS
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGL-VGLSTLKKLVLS 309

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEI-PLLFSNSSFLYILDMSNNSL--S 116
           +N FE         S  N   L  L I  N    E+      N   L  LD+S++ +  S
Sbjct: 310 ANKFENL----CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                 + +L  L+ L L  N        + K C  +E LDL    L          ++ 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
            L   L+LSH+ L          L  ++                                
Sbjct: 426 LLKV-LNLSHSLLDISSEQLFDGLPALQH------------------------------- 453

Query: 237 LLDLSSTNLSAEI---PAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293
            L+L   +           L +L  L  L LS   L         + + +  +DLS N+L
Sbjct: 454 -LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 294 SGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
           + S      S +   +LNL+ N++S  +P+ 
Sbjct: 513 T-SSSIEALSHLKGIYLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (312), Expect = 2e-31
 Identities = 69/334 (20%), Positives = 117/334 (35%), Gaps = 19/334 (5%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
             L  L L + +I     D F      LD L +  N L      +L     A   +    
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIFMAETALS-GPKALKHLFFIQ 114

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
                 +       + N K L +L + +N++S         +  L +LD  NN++     
Sbjct: 115 TGISS-ID---FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 121 ESIGSLRTLRFLVLRNNYLS-GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
           E + SL+    L L  N      +     +    +SL+ G       I   +  S    L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG-RLRVVTKGSERKYFTTLYLVNLL 238
            +      D     P     L +M V   +S+  +      ++  +    F     +  L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSV---ESINLQKHYFFNISSNT----FHCFSGLQEL 283

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
           DL++T+LS E+P+ L  L  L  L LS N           NF  L  L +  N     + 
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 299 PSM-ASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
                +L  +  L+LS++++        Q + L+
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 2e-29
 Identities = 54/290 (18%), Positives = 99/290 (34%), Gaps = 30/290 (10%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           + S N     +      +   L  L  L ++   +       F +   L  L ++ N L 
Sbjct: 39  EFSFNVLPT-IQ---NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                ++   + L+ L      +S    + L N   +ESL LG N++S +I    G    
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTE 153

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVE------------PPK----------SVQHE 214
             L +LD  +N +       + +L                   P           +    
Sbjct: 154 K-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 215 GRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP 274
             L V+ KG +     +L+L    D+   ++S  +   L  +  + ++NL  ++      
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISS 271

Query: 275 EEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
                F  L+ LDL+   LS  +P  +  L  +  L LS N        +
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (286), Expect = 5e-28
 Identities = 71/330 (21%), Positives = 128/330 (38%), Gaps = 35/330 (10%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
             + L+ L L    +S  +P     LS TL +L ++ N+       S   NFP+   + +
Sbjct: 276 CFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISAS-NFPSLTHLSI 332

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNL--SGEIPLLFSNSSFLYILDMSNNSLS 116
             N     L       + NL+ L  L +S++++  S    L   N S L  L++S N   
Sbjct: 333 KGNTKRLELG---TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLS-LKNCTFMESLDLGDNNLSGNIPAWIGASM 175
               E+      L  L L    L  +   S  +N   ++ L+L  + L       +   +
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGL 448

Query: 176 PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVT------KGSERKYF 229
           P L H L+L  N        +  +L  +            RL ++          ++  F
Sbjct: 449 PALQH-LNLQGNHFPKGNIQKTNSLQTLG-----------RLEILVLSFCDLSSIDQHAF 496

Query: 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
           T+L ++N +DLS   L++     L+ L  +  LNL+ NH+   +P  +       T++L 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555

Query: 290 KNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319
           +N L  +      ++ F+     +   L  
Sbjct: 556 QNPLDCTCS----NIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
            +L  L L   R+        +Q    L  L+++++ L            PA   ++L  
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQG 458

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N+F          S+  L +L  LV+S  +LS      F++   +  +D+S+N L+ S  
Sbjct: 459 NHFPKGNIQKTN-SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180
           E++  L+ +  L L +N++S  LP  L   +   +++L  N L          S    L 
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC------SNIYFLE 570

Query: 181 ILDLSHNDLSGFIPPRVGNLSDMK 204
               +   L         N   ++
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLR 594

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (289), Expect = 2e-28
 Identities = 61/323 (18%), Positives = 107/323 (33%), Gaps = 30/323 (9%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
              +    L            F  L+  +  + +A   ++  + +        ++ +   
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRC 317

Query: 62  NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPE 121
             +            +L  L +L ++ N  S  I         L  LD+S N+LS S   
Sbjct: 318 QLKQF-------PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 122 SIGSLRT--LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
           S   L T  LR L L  N     +  +      ++ LD   + L          S+  LL
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV----VTKGSERKYFTTLYLV 235
           + LD+S+ +           L+ +             L++        +    F     +
Sbjct: 428 Y-LDISYTNTKIDFDGIFLGLTSLNT-----------LKMAGNSFKDNTLSNVFANTTNL 475

Query: 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
             LDLS   L         +L  L  LN+SHN+L+            L TLD S N++  
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 296 SIPPSMASLIFMNHLNLSYNNLS 318
           S          +   NL+ N+++
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (273), Expect = 3e-26
 Identities = 49/288 (17%), Positives = 93/288 (32%), Gaps = 25/288 (8%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           DLS N  +  L      S  N  +L  L +S   +       +     L  L ++ N + 
Sbjct: 38  DLSFNPLKI-LK---SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
              P S   L +L  LV     L+      +     ++ L++  N +       + A   
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS---CKLPAYFS 150

Query: 177 GL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
            L  L  +DLS+N +       +  L +              +  +   +    F  + L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA----FQGIKL 206

Query: 235 VNLLDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE--------T 285
              L L     S+ I    L +L  L    L       +   EI     +E         
Sbjct: 207 HE-LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 286 LDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG--EIPNTNQFQTLN 331
             L+              L  ++ ++L+  ++    ++P   ++Q+L+
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 2e-25
 Identities = 62/331 (18%), Positives = 115/331 (34%), Gaps = 41/331 (12%)

Query: 25  QLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCIPKSIGNLKQLI 82
            +  +   +D+++N L+     S   NF     +DLS    E        K+   L  L 
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIETI----EDKAWHGLHHLS 83

Query: 83  TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG- 141
            L+++ N +    P  FS  + L  L      L+      IG L TL+ L + +N++   
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 142 ELPLSLKNCTFMESLDLGDNNLSGNIPAWIG--ASMPGLLHILDLSHNDLSGFIPPRVGN 199
           +LP    N T +  +DL  N +       +      P +   LD+S N +  FI  +   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 200 LSDMKV-----------EPPKSVQHEGRLRVVT------------KGSERKYFTTLYLVN 236
              +                  +Q+   L V              +  E      L  V 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 237 L--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           +    L+ TN  ++   +   L ++  ++L+   +  K  E++      ++L + + +L 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK 320

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTN 325
                 +  L     L L+ N  S       
Sbjct: 321 QFPTLDLPFL---KSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 3e-25
 Identities = 64/337 (18%), Positives = 118/337 (35%), Gaps = 20/337 (5%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV-DLS 59
           N +EL+ L L++  I       +  L   L  L +  N ++   P S             
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSG-EIPLLFSNSSFLYILDMSNNSLSGS 118
                          IG L  L  L +++N +   ++P  FSN + L  +D+S N +   
Sbjct: 113 ETKLAS----LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 119 IPESIGSLRTLRF----LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
               +  LR        L +  N +      + +       L L  N  S NI      +
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL-HELTLRGNFNSSNIMKTCLQN 227

Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
           + G LH+  L   +        +   S M+     ++             +   F  L  
Sbjct: 228 LAG-LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           V+ + L+  ++      ++       +L++    L  + P    +  +L++L L+ NK  
Sbjct: 287 VSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMNKG- 340

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
            SI     +L  +++L+LS N LS     +      N
Sbjct: 341 -SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
              EL+ L    + +        +     L  LD++Y   +            +  T+ +
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKM 455

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
           + N+F+            N   L  L +S   L      +F     L +L+MS+N+L   
Sbjct: 456 AGNSFKDNTL---SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164
                  L +L  L    N +     +       +   +L +N+++
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 39/235 (16%), Positives = 68/235 (28%), Gaps = 62/235 (26%)

Query: 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI 167
               +  LS  +P+ I S  + + + L  N L      S  N +                
Sbjct: 16  YQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE--------------- 57

Query: 168 PAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERK 227
                      L  LDLS  ++          L  +                        
Sbjct: 58  -----------LQWLDLSRCEIETIEDKAWHGLHHLSN---------------------- 84

Query: 228 YFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD 287
                     L L+   + +  P   + L  L  L      L       IG    L+ L+
Sbjct: 85  ----------LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 288 LSKNKLSG-SIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLA 341
           ++ N +    +P   ++L  + H++LSYN +     N  QF   N       +++
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 1e-27
 Identities = 54/343 (15%), Positives = 96/343 (27%), Gaps = 53/343 (15%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           + +    L    +       D   Q        D        R  NS   N P     + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQR-HYNADRNRWHSAWRQANS---NNPQIETRTG 65

Query: 61  NNFEGRLPLCIPKSIGNLKQ--LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
              +          + +  Q   + L + +  L  + P      S L  + +    L   
Sbjct: 66  RALK-----ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
           +P+++     L  L L  N L   LP S+ +   +  L +        +P  + ++    
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 179 -------LHILDLSHNDLSGFIPPRVGNLSDMKV---------EPPKSVQHEGRLRVVTK 222
                  L  L L    +   +P  + NL ++K              ++ H         
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHH--------- 227

Query: 223 GSERKYFTTLYLVNL--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNF 280
                      L  L  LDL         P        L  L L     +  +P +I   
Sbjct: 228 -----------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 281 EWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
             LE LDL        +P  +A L     + +  +  +    +
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (257), Expect = 4e-25
 Identities = 52/301 (17%), Positives = 90/301 (29%), Gaps = 46/301 (15%)

Query: 29  TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISN 88
             + L    +       + L            +    R          N         + 
Sbjct: 13  GRENLYFQGSTALRPYHDVLS-------QWQRHYNADRNRWHSAWRQANSNNPQIETRTG 65

Query: 89  NNLSGEIPLL-FSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL 147
             L     LL  +       L++ +  L    P+    L  L+ + +    L  ELP ++
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 148 KNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMKV 205
           +    +E+L L  N L   +PA I      L  L  L +        +P  + +      
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIA----SLNRLRELSIRACPELTELPEPLASTDASG- 177

Query: 206 EPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL--LDLSSTNLSAEIPAELTSLVHLGTLN 263
                                       LVNL  L L  T +   +PA + +L +L +L 
Sbjct: 178 ------------------------EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 264 LSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
           + ++ L   +   I +   LE LDL       + PP       +  L L   +    +P 
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 324 T 324
            
Sbjct: 272 D 272

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLT--------LDELDVAYNELRGRVPNSLGFNFPA 54
             LR L +        +P+       +        L  L + +  +R  +P S+  N   
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQN 207

Query: 55  --TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSN 112
             ++ + ++         +  +I +L +L  L +         P +F   + L  L + +
Sbjct: 208 LKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 113 NSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIG 172
            S   ++P  I  L  L  L LR       LP  +        + +   +L   +     
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHRP 321

Query: 173 ASMPGL 178
            + P  
Sbjct: 322 VARPAE 327

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 8e-26
 Identities = 51/303 (16%), Positives = 107/303 (35%), Gaps = 41/303 (13%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
            ++ ++ + +          +   +  L +S N LS       +  + L +L++S+N L 
Sbjct: 16  KVTDSSLK-QAL---ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
               + + SL TLR L L NNY+       L     +E+L   +NN+S  +    G    
Sbjct: 72  -ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQG-- 121

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV-------VTKGSERKYF 229
                + L++N ++       G  S              R++        +   +  +  
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRS--------------RVQYLDLKLNEIDTVNFAELA 165

Query: 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
            +   +  L+L    +  ++  +      L TL+LS N L   +  E  +   +  + L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 290 KNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPK 349
            NKL   I  ++     + H +L  N            +     ++ +  +        +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 350 KCP 352
           +C 
Sbjct: 282 ECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 47/313 (15%), Positives = 103/313 (32%), Gaps = 54/313 (17%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           +   ++ L L+   +S          +  L+ L+++ N L     +    +   T+DL++
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYE-TLDLESLSTLRTLDLNN 89

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N  +          +     + TL  +NNN+S               + ++NN ++    
Sbjct: 90  NYVQ---------ELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRD 137

Query: 121 ESIGSLRTLRFLVLRNNYLSG-ELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
              G    +++L L+ N +          +   +E L+L  N +  ++   +  +    L
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFA---KL 193

Query: 180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD 239
             LDLS N L+ F+ P   + + +                                  + 
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTW--------------------------------IS 220

Query: 240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLV-GKIPEEIGNFEWLETLDLSKNKLSGSIP 298
           L +  L   I   L    +L   +L  N    G + +     + ++T+     K      
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 299 PSMASLIFMNHLN 311
               ++  + H  
Sbjct: 280 EEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 44/201 (21%)

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
           +I E   +    +   + ++ L   L    ++   ++ LDL  N LS  I A   A    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
           L   L+LS N L       + +LS ++                                 
Sbjct: 60  LEL-LNLSSNVLYE--TLDLESLSTLRT-------------------------------- 84

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           LDL++  +      EL     + TL+ ++N++  ++       +  + + L+ NK++   
Sbjct: 85  LDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLR 136

Query: 298 PPSMASLIFMNHLNLSYNNLS 318
                    + +L+L  N + 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 15/188 (7%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
           + ++ L L    I           S TL+ L++ YN +   V   + F    T+DLSSN 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK 202

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                   +     +   +  + + NN L   I      S  L   D+  N         
Sbjct: 203 LAF-----MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLR 255

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182
               +  R   +    +      + + CT       G                P    ++
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-------DLPAPFADRLI 308

Query: 183 DLSHNDLS 190
            L H+   
Sbjct: 309 ALGHHHHH 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (255), Expect = 5e-24
 Identities = 64/332 (19%), Positives = 111/332 (33%), Gaps = 62/332 (18%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
                L + ++ ++ T+PD        +  L +  N L   +P         T+++S N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT-SLPALPP-EL-RTLEVSGNQ 92

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                   +P     L +L        +L      L         L +  N L+ S+P  
Sbjct: 93  LT-----SLPVLPPGLLELSIFSNPLTHLPALPSGLCK-------LWIFGNQLT-SLPVL 139

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182
              L+ L    + +N L+  LP           L   +N L+ ++P          L  L
Sbjct: 140 PPGLQELS---VSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSG-----LQEL 186

Query: 183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL--LDL 240
            +S N L+  +P     L  +         +  RL  +                L  L +
Sbjct: 187 SVSDNQLA-SLPTLPSELYKLWA-------YNNRLTSLPAL----------PSGLKELIV 228

Query: 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPS 300
           S   L+  +P   + L     L +S N L   +P        L +L + +N+L+  +P S
Sbjct: 229 SGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPES 279

Query: 301 MASLIFMNHLNLSYNNLSGEIPNTNQFQTLND 332
           +  L     +NL  N LS       +  T   
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.1 bits (239), Expect = 5e-22
 Identities = 61/324 (18%), Positives = 113/324 (34%), Gaps = 75/324 (23%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
            ELRTL ++  +++ ++P     L   L         L   +P+ L       + +  N 
Sbjct: 81  PELRTLEVSGNQLT-SLPVLPPGLL-ELSIFSNPLTHLP-ALPSGL-----CKLWIFGNQ 132

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                   +P     L++L    +S+N L+  +P L S    L  L   NN L+ S+P  
Sbjct: 133 LT-----SLPVLPPGLQELS---VSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPML 179

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182
              L+ L    + +N L+  LP        +  L   +N L+ ++PA         L  L
Sbjct: 180 PSGLQELS---VSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSG-----LKEL 226

Query: 183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS 242
            +S N L+  +P     L +                                   L +S 
Sbjct: 227 IVSGNRLTS-LPVLPSELKE-----------------------------------LMVSG 250

Query: 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMA 302
             L+  +P   + L+ L   ++  N L  ++PE + +     T++L  N LS     ++ 
Sbjct: 251 NRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 303 SLIFMNHLNLSYNNLSGEIPNTNQ 326
            +      +           +  +
Sbjct: 306 EITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 56/185 (30%)

Query: 141 GELPLSLKNC--TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVG 198
             +   ++ C       L++G++ L+  +P  + A     +  L +  N+L+  +P    
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAH----ITTLVIPDNNLT-SLPALPP 81

Query: 199 NLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVH 258
            L                                     L++S   L+  +P     L+ 
Sbjct: 82  ELRT-----------------------------------LEVSGNQLT-SLPVLPPGLLE 105

Query: 259 LGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318
           L   +    HL    P        L  L +  N+L+ S+P     L     L++S N L+
Sbjct: 106 LSIFSNPLTHL----PALPSG---LCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA 154

Query: 319 GEIPN 323
             +P 
Sbjct: 155 -SLPA 158

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 15/160 (9%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
           + L+ L+++  R++ ++P    +L     EL V+ N L   +P         ++ +  N 
Sbjct: 221 SGLKELIVSGNRLT-SLPVLPSELK----ELMVSGNRLT-SLPMLPSGL--LSLSVYRNQ 272

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                   +P+S+ +L    T+ +  N LS          +              +   +
Sbjct: 273 LT-----RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN 162
               R L       ++L                    DN 
Sbjct: 328 PRETRALHLAA--ADWLVPAREGEPAPADRWHMFGQEDNA 365

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.2 bits (245), Expect = 4e-23
 Identities = 74/342 (21%), Positives = 138/342 (40%), Gaps = 37/342 (10%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           +  ++  L LN  +I +     F     T+ +L + +N +R  +P  +  N P    + L
Sbjct: 67  SFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 124

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
             N+    LP        N  +L TL +SNNNL       F  ++ L  L +S+N L+  
Sbjct: 125 ERNDLS-SLP---RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
           +   +  + +L    +  N LS     +L     +E LD   N+++  +   +       
Sbjct: 180 VD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVE---- 227

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
           L IL L HN+L+      + N   +       + +   L  +        F  +  +  L
Sbjct: 228 LTILKLQHNNLTD--TAWLLNYPGLVE---VDLSYN-ELEKIMYHP----FVKMQRLERL 277

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
            +S+  L   +      +  L  L+LSHNHL+  +      F+ LE L L  N +  ++ 
Sbjct: 278 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 334

Query: 299 PSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNL 340
            S  +   + +L LS+N+          F+ +  P++ + + 
Sbjct: 335 LS--THHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 66/325 (20%), Positives = 126/325 (38%), Gaps = 39/325 (12%)

Query: 15  ISDTIPDWFWQLSLT-LDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCI 71
            +  +   F  ++L     +    + +R ++P +L  +F     ++L+    E  +    
Sbjct: 31  QTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EID--- 85

Query: 72  PKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI-GSLRTLR 130
             +      +  L +  N +    P +F N   L +L +  N LS S+P  I  +   L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 131 FLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS 190
            L + NN L      + +  T +++L L  N L+      +  S+   L   ++S+N LS
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----VDLSLIPSLFHANVSYNLLS 199

Query: 191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP 250
               P    + ++             + VV           L    +L L   NL+ +  
Sbjct: 200 TLAIPI--AVEELDAS-------HNSINVVRGPV----NVELT---ILKLQHNNLT-DTA 242

Query: 251 AELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSMASLIFMNH 309
             L +   L  ++LS+N L  KI        + LE L +S N+L  ++      +  +  
Sbjct: 243 W-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 310 LNLSYNNLS---GEIPNTNQFQTLN 331
           L+LS+N+L       P  ++ + L 
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 44/250 (17%)

Query: 70  CIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL 129
           CI  ++        + I                +   I+   N+++       + S R +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL 189
             L L +  +      +      ++ L +G N +   +P  +  ++P L   L L  NDL
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV-LVLERNDL 129

Query: 190 SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI 249
           S  +P  +                               F     +  L +S+ NL   I
Sbjct: 130 S-SLPRGI-------------------------------FHNTPKLTTLSMSNNNLE-RI 156

Query: 250 PAE-LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMN 308
             +   +   L  L LS N L   +   +     L   ++S N LS     ++A  I + 
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVE 208

Query: 309 HLNLSYNNLS 318
            L+ S+N+++
Sbjct: 209 ELDASHNSIN 218

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 5e-23
 Identities = 56/308 (18%), Positives = 101/308 (32%), Gaps = 23/308 (7%)

Query: 29  TLDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVI 86
           T + L +++N +R  V  S          ++L S      +     ++  NL  L  L +
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDL 80

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI--PESIGSLRTLRFLVLRNNYLSG-EL 143
            ++ +    P  F     L+ L +    LS ++       +L+ L  L L  N +    L
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 144 PLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-LHILDLSHNDLSGFIPPRVGNLSD 202
             S      ++S+D   N +   +       + G  L    L+ N L   +    G   +
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 203 MKVEPP----------KSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE 252
                            +V   G        S+       + +        N+       
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 253 LTSLVHLG--TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL 310
              L       L+LSH  +           + L+ L+L+ NK++     +   L  +  L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 311 NLSYNNLS 318
           NLSYN L 
Sbjct: 320 NLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 70/355 (19%), Positives = 112/355 (31%), Gaps = 62/355 (17%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA---TVD 57
           N   LR L L  ++I    PD F  L   L EL + +  L   V     F        +D
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 58  LSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSN--SSFLYILDMSNNSL 115
           LS N       L +  S G L  L ++  S+N +               L    ++ NSL
Sbjct: 130 LSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 116 SGSIPESIGSL------RTLRFLVLRNNYLSGELP------------LSLKNCTFMESLD 157
              +    G          L  L +  N  + ++              SL     +    
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 158 LGDNNLSGNIPAWIGASMPGL-LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGR 216
            G +N+  +      A +    +  LDLSH  +   +  RV                   
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRV------------------- 285

Query: 217 LRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE 276
                       F TL  + +L+L+   ++         L +L  LNLS+N L       
Sbjct: 286 ------------FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 277 IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
                 +  +DL KN ++     +   L  +  L+L  N L+  I        + 
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIF 387

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.3 bits (232), Expect = 6e-21
 Identities = 69/371 (18%), Positives = 132/371 (35%), Gaps = 52/371 (14%)

Query: 5   LRTLVLNKARISDTIPDWFWQ-----------LSLTLDELDVAYNELRGRVPNSLGFNFP 53
           L  L ++    +  I   F             L+  +      ++ ++    N+      
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 54  ATV---DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM 110
           ++V   DLS       L     +    LK L  L ++ N ++      F     L +L++
Sbjct: 266 SSVRHLDLSHGFVF-SLN---SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 111 SNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW 170
           S N L      +   L  + ++ L+ N+++     + K    +++LDL DN L+      
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------ 375

Query: 171 IGASMPGL--LHILDLSHNDLSGFIP----PRVGNLSDMKVEPPKSVQHEGRLRVVT--- 221
              ++  +  +  + LS N L           + +LS+ ++E    +    R+  +    
Sbjct: 376 ---TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 222 -------KGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL-----TSLVHLGTLNLSHNHL 269
                    S  +  +    +  L L    L      EL       L HL  L L+HN+L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 270 VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQT 329
               P    +   L  L L+ N+L+  +  +      +  L++S N L    PN + F +
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPAN-LEILDISRNQLL--APNPDVFVS 548

Query: 330 LNDPSIYEGNL 340
           L+   I     
Sbjct: 549 LSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.1 bits (221), Expect = 1e-19
 Identities = 67/357 (18%), Positives = 127/357 (35%), Gaps = 39/357 (10%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQL-SLTLDELDVAYNELRGRVPNSL-GFNFPATVDL 58
               +         I D   + F  L   ++  LD+++  +                ++L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
           + N    ++     ++   L  L  L +S N L       F     +  +D+  N ++  
Sbjct: 298 AYNKIN-KIA---DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 119 IPESIGSLRTLRFLVLRNN--------------YLSGELPLSLKNCTF-MESLDLGDNNL 163
             ++   L  L+ L LR+N              +LSG   ++L         + L +N L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413

Query: 164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQH----EGRLRV 219
                 +    +P L  IL L+ N  S     +  +          S++     E  L++
Sbjct: 414 ENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSE-------NPSLEQLFLGENMLQL 465

Query: 220 VTKGS-ERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIG 278
             +       F  L  + +L L+   L++  P   + L  L  L+L+ N L   +     
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND- 523

Query: 279 NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSI 335
               LE LD+S+N+L    P    SL   + L++++N    E   +     LN  ++
Sbjct: 524 LPANLEILDISRNQLLAPNPDVFVSL---SVLDITHNKFICECELSTFINWLNHTNV 577

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 45/294 (15%), Positives = 87/294 (29%), Gaps = 52/294 (17%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
                  N        +P+    L     L++S N +       F     L +L++ +  
Sbjct: 8   IAFYRFCNLTQ-----VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 115 LSGSI-PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS-GNIPAWIG 172
              +I  E+  +L  LR L L ++ +    P + +    +  L L    LS   +     
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 173 ASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVT------KGSER 226
            ++  L   LDLS N +               +    S      L+ +            
Sbjct: 120 RNLKALTR-LDLSKNQIR-------------SLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

Query: 227 KYFTTLYLVNL--LDLSSTNLSAEIPAELTSL------VHLGTLNLSHNHLVGKIPEEIG 278
                L    L    L++ +L + +  +          + L  L++S N     I     
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225

Query: 279 NF------------EWLETLDLSKNKLSGSIPPSMASLIFMN--HLNLSYNNLS 318
           N               +       + +      + A L   +  HL+LS+  + 
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.8 bits (246), Expect = 5e-23
 Identities = 51/303 (16%), Positives = 107/303 (35%), Gaps = 41/303 (13%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
            ++ ++ + +          +   +  L +S N LS       +  + L +L++S+N L 
Sbjct: 16  KVTDSSLK-QAL---ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                 + SL TLR L L NNY+       L     +E+L   +NN+S  +    G    
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQG-- 121

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV-------VTKGSERKYF 229
                + L++N ++       G  S              R++        +   +  +  
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRS--------------RVQYLDLKLNEIDTVNFAELA 165

Query: 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
            +   +  L+L    +  ++  ++     L TL+LS N L   +  E  +   +  + L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 290 KNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPK 349
            NKL   I  ++     + H +L  N            +     ++ +  +        +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 350 KCP 352
           +C 
Sbjct: 282 ECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.8 bits (220), Expect = 1e-19
 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 29/257 (11%)

Query: 71  IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130
           I +   N  +     +++++L   +  L  ++  +  LD+S N LS      +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 131 FLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLSHND 188
            L L +N L     L L++ + + +LDL +N +           +     +  L  ++N+
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNN 110

Query: 189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSA- 247
           +S     R     ++ +          ++ ++              V  LDL    +   
Sbjct: 111 ISRVSCSRGQGKKNIYL-------ANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTV 159

Query: 248 EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM 307
                  S   L  LNL +N +   +  ++  F  L+TLDLS NKL+  + P   S   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 308 NHLNLSYNNLSGEIPNT 324
             ++L  N L   I   
Sbjct: 217 TWISLRNNKLV-LIEKA 232

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.1 bits (208), Expect = 4e-18
 Identities = 44/319 (13%), Positives = 97/319 (30%), Gaps = 54/319 (16%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           +   ++ L L+   +S          +  L+ L+++ N L     +    +   T+DL++
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYE-TLDLESLSTLRTLDLNN 89

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N           + +     + TL  +NNN+S               + ++NN ++    
Sbjct: 90  NYV---------QELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRD 137

Query: 121 ESIGSLRTLRFLVLRNNYLSG-ELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLL 179
              G    +++L L+ N +          +   +E L+L  N +  ++   +  +    L
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK---L 193

Query: 180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD 239
             LDLS N L+ F+ P   + + +                                  + 
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTW--------------------------------IS 220

Query: 240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPP 299
           L +  L   I   L    +L   +L  N             +      ++K  +      
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 300 SMASLIFMNHLNLSYNNLS 318
           +          +       
Sbjct: 279 NEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 49/301 (16%), Positives = 94/301 (31%), Gaps = 24/301 (7%)

Query: 30  LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN 89
           ++ L  A N +  RV  S G      + L++N     L        G   ++  L +  N
Sbjct: 101 IETLHAANNNIS-RVSCSRGQGKK-NIYLANNKIT-MLR---DLDEGCRSRVQYLDLKLN 154

Query: 90  NLSG-EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLK 148
            +       L ++S  L  L++  N +   +   +     L+ L L +N L+  +    +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 149 NCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPR-VGNLSDMKVEP 207
           +   +  + L +N L   I   +  S    L   DL  N                ++   
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFS--QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSL--VHLGTLNLS 265
            ++V+          G   +  T   L +       +L A     L +L       L+  
Sbjct: 269 KQTVKKLT-------GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 266 HNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTN 325
            +    ++  E  N      +D  K +    I            L      L  ++ N  
Sbjct: 322 GSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 326 Q 326
           +
Sbjct: 381 R 381

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 42/340 (12%), Positives = 88/340 (25%), Gaps = 33/340 (9%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
             + TL      IS                + +A N++   + +           +DL  
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKK----NIYLANNKIT-MLRDLDEGCRSRVQYLDLKL 153

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N  +    +   +   +   L  L +  N +  ++      +  L  LD+S+N L+  + 
Sbjct: 154 NEIDT---VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMG 207

Query: 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180
               S   + ++ LRNN L   +  +L+    +E  DL  N           +    +  
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 181 IL-----DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG------------RLRVVTKG 223
           +       L+  +      P +G+      E   +   +               +     
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 224 SERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWL 283
                         +D         I           TL      L  ++         L
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 284 ETLDLSKNKLSG--SIPPSMASLIFMNHLNLSYNNLSGEI 321
           +                   + L  +  +   Y  +  E 
Sbjct: 387 DGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 33/201 (16%), Positives = 71/201 (35%), Gaps = 44/201 (21%)

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
           +I E   +    +   + ++ L   L    ++   ++ LDL  N LS    A +      
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTK 59

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
           L   L+LS N L   +   + +LS ++                                 
Sbjct: 60  LEL-LNLSSNVLYETLD--LESLSTLRT-------------------------------- 84

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           LDL++  +      EL     + TL+ ++N++  ++       +  + + L+ NK++   
Sbjct: 85  LDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLR 136

Query: 298 PPSMASLIFMNHLNLSYNNLS 318
                    + +L+L  N + 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEID 157

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.8 bits (229), Expect = 4e-21
 Identities = 61/322 (18%), Positives = 127/322 (39%), Gaps = 39/322 (12%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
             +  LV+   +++  I      L+  L+ L++  N++   +           + + +N 
Sbjct: 44  ESITKLVVAGEKVAS-IQG-IEYLT-NLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNK 99

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                 +    ++ NL  L  L ++ +N+S   PL  +N + +Y L++  N    S    
Sbjct: 100 ------ITDISALQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNLGANHNL-SDLSP 150

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LH 180
           + ++  L +L +  + +    P++  N T + SL L  N +    P      +  L  LH
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDISP------LASLTSLH 202

Query: 181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240
                 N ++   P  V N++ +       + +        K ++      L  +  L++
Sbjct: 203 YFTAYVNQITDITP--VANMTRLNS---LKIGN-------NKITDLSPLANLSQLTWLEI 250

Query: 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPS 300
            +  +S +I A +  L  L  LN+  N +       + N   L +L L+ N+L       
Sbjct: 251 GTNQIS-DINA-VKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 301 MASLIFMNHLNLSYNNLSGEIP 322
           +  L  +  L LS N+++   P
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 64/316 (20%), Positives = 129/316 (40%), Gaps = 57/316 (18%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
            +L  L +   +I+D        L+  L EL +  + +   +          +++L +N+
Sbjct: 88  VKLTNLYIGTNKITD--ISALQNLT-NLRELYLNEDNISD-ISPLANLTKMYSLNLGANH 143

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                       + N+  L  L ++ + +    P   +N + LY L ++ N +    P  
Sbjct: 144 NLS-----DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-- 194

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182
           + SL +L +     N ++   P++  N T + SL +G+N ++ ++     A++   L  L
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNNKIT-DLSPL--ANLSQ-LTWL 248

Query: 183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS 242
           ++  N +S      V +L+ +K+                                L++ S
Sbjct: 249 EIGTNQISD--INAVKDLTKLKM--------------------------------LNVGS 274

Query: 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMA 302
             +S +I   L +L  L +L L++N L  +  E IG    L TL LS+N ++   P  +A
Sbjct: 275 NQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 303 SLIFMNHLNLSYNNLS 318
           SL  M+  + +   + 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.0 bits (219), Expect = 9e-20
 Identities = 62/340 (18%), Positives = 121/340 (35%), Gaps = 73/340 (21%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
            E    VL KA ++D +     +L  ++ +L VA  ++   +           ++L+ N 
Sbjct: 22  AEGIRAVLQKASVTDVVT--QEELE-SITKLVVAGEKVAS-IQGIEYLTNLEYLNLNGNQ 77

Query: 63  FEGRLPLC----------------IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLY 106
                PL                    ++ NL  L  L ++ +N+S   PL  +N + +Y
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPL--ANLTKMY 135

Query: 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
            L++  N    S    + ++  L +L +  + +    P++  N T + SL L  N +   
Sbjct: 136 SLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDI 192

Query: 167 IPAWIGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGS 224
            P      +  L  LH      N ++   P  V N++ +                     
Sbjct: 193 SP------LASLTSLHYFTAYVNQITDITP--VANMTRLNS------------------- 225

Query: 225 ERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE 284
                        L + +  ++   P  L +L  L  L +  N +       + +   L+
Sbjct: 226 -------------LKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLK 268

Query: 285 TLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
            L++  N++S      + +L  +N L L+ N L  E    
Sbjct: 269 MLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.0 bits (206), Expect = 4e-18
 Identities = 62/318 (19%), Positives = 109/318 (34%), Gaps = 65/318 (20%)

Query: 5   LRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNF 63
             TL    A I+   PD      L       +    +   V           + ++    
Sbjct: 2   AATLATLPAPINQIFPD----ADLAEGIRAVLQKASVTDVVTQE-ELESITKLVVAGEKV 56

Query: 64  EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
                    + I  L  L  L ++ N ++   PL  SN   L  L +  N +  +   ++
Sbjct: 57  AS------IQGIEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKI--TDISAL 106

Query: 124 GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHI 181
            +L  LR L L  + +S   PL+  N T M SL+LG N+   ++       +  +  L+ 
Sbjct: 107 QNLTNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLSP-----LSNMTGLNY 159

Query: 182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241
           L ++ + +    P  + NL+D+                                  L L+
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYS--------------------------------LSLN 185

Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
              +    P  L SL  L       N +    P  + N   L +L +  NK++   P  +
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239

Query: 302 ASLIFMNHLNLSYNNLSG 319
           A+L  +  L +  N +S 
Sbjct: 240 ANLSQLTWLEIGTNQISD 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 61/323 (18%), Positives = 114/323 (35%), Gaps = 48/323 (14%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           +   L  L LN+  +S   P  F  L   L  L +  N L+  +P  +         +D+
Sbjct: 54  SFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111

Query: 59  SSNNFEGRLPLCIPKSI-GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG 117
           S N         +   +  +L  L +L + +N+L       FS  + L  L +   +L+ 
Sbjct: 112 SENKIV-----ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
              E++  L  L  L LR+  ++     S K    ++ L++        +          
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP--NCLYGL 224

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
            L  L ++H +L+  +P                                     L  +  
Sbjct: 225 NLTSLSITHCNLTA-VPYLA-------------------------------VRHLVYLRF 252

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGS 296
           L+LS   +S    + L  L+ L  + L    L   +         +L  L++S N+L+ +
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-T 310

Query: 297 IPPSM-ASLIFMNHLNLSYNNLS 318
           +  S+  S+  +  L L  N L+
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 59/283 (20%), Positives = 113/283 (39%), Gaps = 31/283 (10%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            V      F   +P  IP           L +  N +       F++   L  L+++ N 
Sbjct: 15  AVLCHRKRFV-AVPEGIPTE------TRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
           +S   P +  +L  LR L LR+N L           + +  LD+ +N +   +  ++   
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQD 126

Query: 175 MPGLLHILDLSHNDLSGFIPPRV----GNLSDMKVE-------PPKSVQHEGRLRVVTKG 223
           +  L   L++  NDL  +I  R      +L  + +E       P +++ H   L V+   
Sbjct: 127 LYNLKS-LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 224 S------ERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE- 276
                      F  LY + +L++S       +       ++L +L+++H +L   +P   
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

Query: 277 IGNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNLS 318
           + +  +L  L+LS N +S +I  SM   L+ +  + L    L+
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA 285

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 57/333 (17%), Positives = 114/333 (34%), Gaps = 19/333 (5%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           +   L  L L+   +S     WF  LS +L  L++  N  +     SL  N     T+ +
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
            +      +          L  L  L I   +L         +   ++ L +  +  +  
Sbjct: 131 GNVETFSEIR---RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESL--------DLGDNNLSGNIPAW 170
           +      L ++R+L LR+  L+      L        +         L D + +  +   
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 171 IGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230
                   +   D + N L  F P     +S++      +++     +          ++
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE---IGNFEWLETLD 287
            L  V  + + ++ +     +    L  L  L+LS N +V +  +     G +  L+TL 
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 288 LSKNKLS--GSIPPSMASLIFMNHLNLSYNNLS 318
           LS+N L         + +L  +  L++S N   
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 64/326 (19%), Positives = 108/326 (33%), Gaps = 34/326 (10%)

Query: 33  LDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLK-----QLITLVIS 87
            D ++NEL   +   L  +     D + N   G         +  L       +  L I 
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 88  NNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGEL---P 144
              L  ++  ++S    +  + + N+ +          L++L FL L  N +  E     
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 145 LSLKNCTFMESLDLGDNNLSGNIPAWIG--ASMPGLLHILDLSHNDLSGFIPPRVGNLSD 202
                   +++L L  N+L  ++        ++  L   LD+S N     +P        
Sbjct: 355 ACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTS-LDISRNTFH-PMPDSCQWPEK 411

Query: 203 MKVEPPKSVQHEG-RLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGT 261
           M+      +      +RVV          TL    +LD+S+ NL       L  L     
Sbjct: 412 MRF-----LNLSSTGIRVVKTC----IPQTL---EVLDVSNNNLD-SFSLFLPRLQE--- 455

Query: 262 LNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI 321
           L +S N L  K   +   F  L  + +S+N+L          L  +  + L  N      
Sbjct: 456 LYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513

Query: 322 PNTNQFQT-LNDPSIYEGNLALCGDP 346
           P  +     LN  S  E   A C   
Sbjct: 514 PRIDYLSRWLNKNSQKEQGSAKCSGS 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 39/264 (14%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
             D  S +F   +P  +  +      + +L +S N ++          + L +L + ++ 
Sbjct: 9   VCDGRSRSFT-SIPSGLTAA------MKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
           ++    ++  SL +L  L L +N+LS          + ++ L+L  N         +  +
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
           +   L  L + + +    I                                   F  L  
Sbjct: 122 LTN-LQTLRIGNVETFSEIRRID-------------------------------FAGLTS 149

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           +N L++ + +L       L S+  +  L L  +     +         +  L+L    L+
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 295 GSIPPSMASLIFMNHLNLSYNNLS 318
                 +      + +       S
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 38/153 (24%)

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
             + D      +  IP  +            +++                         L
Sbjct: 7   SGVCDGRSRSFT-SIPSGL----------TAAMKS------------------------L 31

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
           DLS   ++     +L +  +L  L L  + +     +   +   LE LDLS N LS S+ 
Sbjct: 32  DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLS 90

Query: 299 PSM-ASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
            S    L  + +LNL  N     +  T+ F  L
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNL 122

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 77/326 (23%), Positives = 129/326 (39%), Gaps = 56/326 (17%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
             L +LV +   ++  +P+    L  +L   +     L   +P  L       + +S+N 
Sbjct: 91  PHLESLVASCNSLT-ELPELPQSLK-SLLVDNNNLKAL-SDLPPLL-----EYLGVSNNQ 142

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
            E +LP      + N   L  + + NN+L  ++P L  +   L  +   NN L   +PE 
Sbjct: 143 LE-KLP-----ELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPE- 190

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182
           + +L  L  +   NN L  +LP    +   +ES+  G+N L   +P          L  +
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-ELPEL---QNLPFLTTI 242

Query: 183 DLSHNDLSGFIPPRVGNLSDMKV------EPPKSVQHEGRLRVVTKGSERKYFTTL--YL 234
              +N L   +P    +L  + V      + P+  Q    L V         F+ L    
Sbjct: 243 YADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV-----SENIFSGLSELP 296

Query: 235 VNL--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK 292
            NL  L+ SS  +   +     SL  L   N+S+N L+ ++P        LE L  S N 
Sbjct: 297 PNLYYLNASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELPALPPR---LERLIASFNH 348

Query: 293 LSGSIPPSMASLIFMNHLNLSYNNLS 318
           L+  +P    +L     L++ YN L 
Sbjct: 349 LA-EVPELPQNL---KQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 68/341 (19%), Positives = 133/341 (39%), Gaps = 69/341 (20%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV---- 56
           + T L+  + + + ++  +P     +  +  E   A++E     P   G      V    
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 57  ----------DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLY 106
                     +L++          +P+   +L+   +LV S N+L+ E+P L  +   L 
Sbjct: 67  DCLDRQAHELELNNLGLS-----SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLL 117

Query: 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
           + + +  +LS   P        L +L + NN L  +LP  L+N +F++ +D+ +N+L   
Sbjct: 118 VDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-K 167

Query: 167 IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
           +P    +     L  +   +N L     P + NL  +             +       + 
Sbjct: 168 LPDLPPS-----LEFIAAGNNQLEEL--PELQNLPFLTA-----------IYA-----DN 204

Query: 227 KYFTTL--YLVNL--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEW 282
                L    ++L  +   +  L      EL +L  L T+   +N L   +P+   +   
Sbjct: 205 NSLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS--- 258

Query: 283 LETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
           LE L++  N L+  +P    SL F++     ++ LS   PN
Sbjct: 259 LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 71/321 (22%), Positives = 113/321 (35%), Gaps = 81/321 (25%)

Query: 26  LSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLV 85
           L     EL++    L   +P         ++  S N+        +P+   +LK L+   
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLT-----ELPELPQSLKSLLVDN 120

Query: 86  ISNNNLSGEIPLL---------------FSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130
            +   LS   PLL                 NSSFL I+D+ NNSL   +P+   SL  + 
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA 179

Query: 131 FLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS 190
                NN L  ELP  L+N  F+ ++   +N+L   +P    +     L  +   +N L 
Sbjct: 180 ---AGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLS-----LESIVAGNNILE 228

Query: 191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP 250
               P + NL  +                                  +   +  L   +P
Sbjct: 229 --ELPELQNLPFLTT--------------------------------IYADNNLLK-TLP 253

Query: 251 AELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL 310
               SL     LN+  N+L   +PE   +   L  LD+S+N  S  +     +L    +L
Sbjct: 254 DLPPSLE---ALNVRDNYLT-DLPELPQS---LTFLDVSENIFS-GLSELPPNL---YYL 302

Query: 311 NLSYNNLSGEIPNTNQFQTLN 331
           N S N +          + LN
Sbjct: 303 NASSNEIRSLCDLPPSLEELN 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 60/329 (18%), Positives = 115/329 (34%), Gaps = 61/329 (18%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
             L  +     ++   +P+      LT   +    N L+ ++P+    +   ++   +N 
Sbjct: 173 PSLEFIAAGNNQLE-ELPELQNLPFLT--AIYADNNSLK-KLPDLPL-SL-ESIVAGNNI 226

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
            E          + NL  L T+   NN L   +P L  +   L  L++ +N L+  +PE 
Sbjct: 227 LE------ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPEL 275

Query: 123 IGSLRTLRFLVLRNNYLSGELP----LSLKNCTF---------MESLDLGDNNLSGNIPA 169
             SL  L       + LS   P    L+  +            +E L++ +N L   +PA
Sbjct: 276 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA 334

Query: 170 WIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYF 229
                    L  L  S N L+  +P    NL  + V           LR           
Sbjct: 335 LPPR-----LERLIASFNHLA-EVPELPQNLKQLHV-------EYNPLREFPDI------ 375

Query: 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
                 ++ DL   +  AE+P    +L  L   ++  N L  + P+   +   +E L ++
Sbjct: 376 ----PESVEDLRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPES---VEDLRMN 424

Query: 290 KNKLSGSIPPSMASLIFMNHLNLSYNNLS 318
             ++      +  +   +      +++  
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 51/275 (18%), Positives = 95/275 (34%), Gaps = 48/275 (17%)

Query: 71  IPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130
           I     +   L   +  ++NL+ E+P+   N         + +    + P   G  R + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 131 FLVLRNNYLSGELPLSLKNC---------TFMESLDLGDNNLSGNIPAWIGASMPGL--L 179
              LR+        L L N            +ESL    N+L+  +P         L  L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQ----SLKSL 116

Query: 180 HILDLSHNDLSGFIPP-RVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
            + + +   LS   P      +S+ ++E    +Q+   L++                  +
Sbjct: 117 LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI------------------I 158

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
           D+ + +L  ++P    SL     +   +N L  ++P E+ N  +L  +    N L   +P
Sbjct: 159 DVDNNSLK-KLPDLPPSLEF---IAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLP 211

Query: 299 PSMASLIFMNHLNLSYNNLSG--EIPNTNQFQTLN 331
               SL     +    N L    E+ N     T+ 
Sbjct: 212 DLPLSL---ESIVAGNNILEELPELQNLPFLTTIY 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 49/301 (16%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISN---NNLSGEIPLLFSNSSFLYILDMSNN 113
            LS N+F   +            +     +     N     +     N      L ++  
Sbjct: 12  SLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FSELQLNRL 69

Query: 114 SLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGA 173
           +LS S+P+++     +  L +  N L   LP    +   +E LD  DN LS  +P    +
Sbjct: 70  NLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPAS 121

Query: 174 SMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLY 233
                L  LD+ +N L+  +P     L  +            +L ++ +           
Sbjct: 122 -----LKHLDVDNNQLT-MLPELPALLEYINA-------DNNQLTMLPE----------L 158

Query: 234 LVNL--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLET----LD 287
             +L  L + +  L+  +P    SL     L++S N L   +P         E       
Sbjct: 159 PTSLEVLSVRNNQLT-FLPELPESLEA---LDVSTNLLES-LPAVPVRNHHSEETEIFFR 213

Query: 288 LSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPL 347
             +N+++  IP ++ SL     + L  N LS      +  Q    P  +   +       
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDG 271

Query: 348 P 348
            
Sbjct: 272 Q 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.3 bits (216), Expect = 4e-19
 Identities = 58/285 (20%), Positives = 100/285 (35%), Gaps = 49/285 (17%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
             + N     L  C+      + Q   L ++  NLS  +P        + +L+++ N+L 
Sbjct: 43  GENRNEAVSLLKECL------INQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI 93

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
            S+PE   SL  L      +N LS  LP    +      LD+ +N L+  +P        
Sbjct: 94  -SLPELPASLEYLD---ACDNRLS-TLPELPASLK---HLDVDNNQLT-MLPELPA---- 140

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
            LL  ++  +N L+  +P    +L  + V          +L  + +             +
Sbjct: 141 -LLEYINADNNQLT-MLPELPTSLEVLSV-------RNNQLTFLPEL----------PES 181

Query: 237 L--LDLSSTNLSAEIPAELTSLVHLGT----LNLSHNHLVGKIPEEIGNFEWLETLDLSK 290
           L  LD+S+  L   +PA      H            N +   IPE I + +   T+ L  
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 291 NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSI 335
           N LS  I  S++        +      S      N        ++
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 4e-14
 Identities = 42/237 (17%), Positives = 73/237 (30%), Gaps = 64/237 (27%)

Query: 82  ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG 141
           +++++  NN        F N+          +        +              N    
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTI---------SGTYADYFSAWDKWEKQALPGENRNEAVS 51

Query: 142 ELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLS 201
            L   L N      L L   NLS ++P  +       + +L+++ N L   +P    +L 
Sbjct: 52  LLKECLINQF--SELQLNRLNLS-SLPDNLPPQ----ITVLEITQNALI-SLPELPASLE 103

Query: 202 DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGT 261
                                               LD     LS  +P    SL H   
Sbjct: 104 Y-----------------------------------LDACDNRLS-TLPELPASLKH--- 124

Query: 262 LNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318
           L++ +N L   +PE       LE ++   N+L+  +P    SL     L++  N L+
Sbjct: 125 LDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSL---EVLSVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
             L+ L ++  +++  +P+    L      ++   N+L   +P          + + +N 
Sbjct: 120 ASLKHLDVDNNQLT-MLPELPALLE----YINADNNQLT-MLPELPTSL--EVLSVRNNQ 171

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSG---EIPLLFSNSSFLYILDMSNNSLSGSI 119
                   +P+   +L+ L    +S N L            +           N ++  I
Sbjct: 172 LT-----FLPELPESLEALD---VSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW 170
           PE+I SL     ++L +N LS  +  SL   T            S +    
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 18/170 (10%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-----FPATVD 57
           T L  L +   +++  +P+    L      LDV+ N L   +P     N           
Sbjct: 160 TSLEVLSVRNNQLT-FLPELPESLE----ALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213

Query: 58  LSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG 117
              N         IP++I +L    T+++ +N LS  I    S  +            S 
Sbjct: 214 CRENRIT-----HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI 167
           S  +     R L   V    +        +         +   N  S  +
Sbjct: 269 SDGQQNTLHRPLADAV--TAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 6e-19
 Identities = 67/333 (20%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           Q +     ++    +  +   F  ++L     +    + +R ++P +L  +F     ++L
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 82

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
           +    E  +      +      +  L +  N +    P +F N   L +L +  N LS S
Sbjct: 83  NDLQIE-EID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 137

Query: 119 IPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
           +P  I  +   L  L + NN L      + +  T +++L L  N L+      +  S+  
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----VDLSLIP 192

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
            L   ++S+N LS    P    + ++             + VV           L +   
Sbjct: 193 SLFHANVSYNLLSTLAIPI--AVEELDAS-------HNSINVVRGPV----NVELTI--- 236

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           L L   NL+ +    L +   L  ++LS+N L   +       + LE L +S N+L  ++
Sbjct: 237 LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293

Query: 298 PPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
                 +  +  L+LS+N+L     N  QF  L
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 65/342 (19%), Positives = 109/342 (31%), Gaps = 60/342 (17%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           N   L  LVL +  +S      F      L  L ++ N L  R+ +       +   + L
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL 178

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
           SSN     + L        +  L    +S N LS       +    +  LD S+NS++  
Sbjct: 179 SSNRLT-HVDL------SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-V 225

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
           +         L  L L++N L+ +    L N   +  +DL  N L   I       M  L
Sbjct: 226 VRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 280

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
              L +S+N L   +      +  +KV                                L
Sbjct: 281 -ERLYISNNRLV-ALNLYGQPIPTLKV--------------------------------L 306

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
           DLS  +L   +         L  L L HN +V  +   +     L+ L LS N    +  
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSL 362

Query: 299 PSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNL 340
            ++   +    ++ +  +   +    +          Y   L
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 46/262 (17%)

Query: 60  SNNFEGRLP--LCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG 117
             N + R P   CI  ++        + I                +   I+   N+++  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
                + S R +  L L +  +      +      ++ L +G N +   +P  +  ++P 
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPL 124

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
           L   L L  NDLS  +P  +                               F     +  
Sbjct: 125 LTV-LVLERNDLS-SLPRGI-------------------------------FHNTPKLTT 151

Query: 238 LDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
           L +S+ NL   I  +   +   L  L LS N L   +   +     L   ++S N LS  
Sbjct: 152 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-- 205

Query: 297 IPPSMASLIFMNHLNLSYNNLS 318
              ++A  I +  L+ S+N+++
Sbjct: 206 ---TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 6e-12
 Identities = 56/317 (17%), Positives = 112/317 (35%), Gaps = 38/317 (11%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQL---------------SLTLDELDVAYNELRGRVP 45
             T L+ L L+  R++         L                + ++ELD ++N +   V 
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVR 227

Query: 46  NSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL 105
             +       + L  NN            + N   L+ + +S N L   +   F     L
Sbjct: 228 GPVNVELT-ILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG 165
             L +SNN L  ++      + TL+ L L +N+L   +  +      +E+L L  N++  
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337

Query: 166 NIPAWIGASMPGLLHILDLSHNDLSG----FIPPRVGNLSDMKVEPPKSVQHEGRLRVVT 221
            +     ++   L + L LSHND        +   V   +    +    + ++    +  
Sbjct: 338 TLKL---STHHTLKN-LTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCC 393

Query: 222 KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE 281
           K S++ Y   L    L  ++ T++  ++           T+N   +       +     +
Sbjct: 394 KESDKPYLDRL----LQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 282 WLETLDLSKNKLSGSIP 298
             E L+   N+L   + 
Sbjct: 450 GNEQLEAEVNELRAEVQ 466

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 8e-11
 Identities = 46/253 (18%), Positives = 92/253 (36%), Gaps = 47/253 (18%)

Query: 86  ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIG-----SLRTLRFLVLRNNYLS 140
              N    +      +S+  Y     +  +     +        +L   + +  +N+ + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 141 GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNL 200
                 L +   +E L+L D  +   I  +  A    +   L +  N +  ++PP V   
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQK-LYMGFNAIR-YLPPHV--- 118

Query: 201 SDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL-TSLVHL 259
                                       F  + L+ +L L   +LS  +P  +  +   L
Sbjct: 119 ----------------------------FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149

Query: 260 GTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318
            TL++S+N+L  +I ++       L+ L LS N+L+  +  S   +  + H N+SYN LS
Sbjct: 150 TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS 205

Query: 319 GEIPNTNQFQTLN 331
             +      + L+
Sbjct: 206 -TLAIPIAVEELD 217

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 8e-19
 Identities = 46/270 (17%), Positives = 86/270 (31%), Gaps = 19/270 (7%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           DLS N     L      S  +  +L  L +S   +       + + S L  L ++ N + 
Sbjct: 34  DLSFNPLR-HLG---SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                +   L +L+ LV     L+      + +   ++ L++  N +       +     
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFS 146

Query: 177 GL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
            L  L  LDLS N +       +  L  M +           +  +  G+    F  + L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRL 202

Query: 235 VNLLDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHLVGK---IPEEIGNFEWLETLDLSK 290
              L L +   S  +    +  L  L    L       +      +    E L  L + +
Sbjct: 203 HK-LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 291 NKLSG-SIPPSMASLIFMNHLNLSYNNLSG 319
            +L+           +F    N+S  +L  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 62/295 (21%), Positives = 99/295 (33%), Gaps = 46/295 (15%)

Query: 27  SLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVI 86
           +LT++E  +AY +      + +   F    ++SS +        +     N      L +
Sbjct: 256 NLTIEEFRLAYLDY---YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLEL 311

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS--GELP 144
            N        L   +   L  L  ++N    +  E    L +L FL L  N LS  G   
Sbjct: 312 VNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCS 366

Query: 145 LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK 204
            S    T ++ LDL  N +      ++G      L  LD  H++L       V       
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ---LEHLDFQHSNLKQMSEFSV------- 416

Query: 205 VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL 264
                                   F +L  +  LD+S T+           L  L  L +
Sbjct: 417 ------------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 265 SHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318
           + N        +I      L  LDLS+ +L    P +  SL  +  LN++ N L 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 65/333 (19%), Positives = 108/333 (32%), Gaps = 49/333 (14%)

Query: 15  ISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKS 74
             D I D F  L+  +    +    +  RV +         ++L +  F        P  
Sbjct: 270 YLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG-----QFPT- 321

Query: 75  IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS--GSIPESIGSLRTLRFL 132
              LK L  L  ++N           +   L  LD+S N LS  G   +S     +L++L
Sbjct: 322 -LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF 192
            L  N +   +  +      +E LD   +NL       +  S+  L++ LD+SH      
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVA 436

Query: 193 IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE 252
                  LS ++V                                L ++  +       +
Sbjct: 437 FNGIFNGLSSLEV--------------------------------LKMAGNSFQENFLPD 464

Query: 253 -LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN 311
             T L +L  L+LS   L    P    +   L+ L+++ N+L          L  +  + 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 312 LSYNNLSGEIPNTNQFQT-LNDPSIYEGNLALC 343
           L  N      P  +     LN  S  E   A C
Sbjct: 525 LHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 557

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 2e-16
 Identities = 53/297 (17%), Positives = 88/297 (29%), Gaps = 48/297 (16%)

Query: 5   LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFE 64
           + +  L    I       +      L+ ++  + +       SL       +  +SN   
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGG 338

Query: 65  GRLPLCIPKSIGNLKQLITLVISNNNLS--GEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                       +L  L  L +S N LS  G        ++ L  LD+S N +  ++  +
Sbjct: 339 NAFSE------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 123 IGSLRTLRFLVLRNNYLSGELPLS-LKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHI 181
              L  L  L  +++ L      S   +   +  LD+   +        I   +  L   
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEV- 449

Query: 182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241
           L ++ N       P +                               FT L  +  LDLS
Sbjct: 450 LKMAGNSFQENFLPDI-------------------------------FTELRNLTFLDLS 478

Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP 298
              L    P    SL  L  LN++ N L             L+ + L  N    S P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.2 bits (193), Expect = 4e-16
 Identities = 66/358 (18%), Positives = 121/358 (33%), Gaps = 43/358 (12%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
              + L L+   +       F+     L  LD++  E++     +   +     T+ L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTG 85

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSL-SGSI 119
           N  +  L      +   L  L  LV    NL+        +   L  L++++N + S  +
Sbjct: 86  NPIQ-SLA---LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCT----FMESLDLGDNNLSGNIPAWIGASM 175
           PE   +L  L  L L +N +       L+          SLDL  N ++  I       +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI 200

Query: 176 PGLLHILDLSHNDLSGFIPPRV-GNLSDMKVE--PPKSVQHEGRLRVVTKGSERKYFTTL 232
              LH L L +N  S  +       L+ ++V        ++EG L    K +  +    L
Sbjct: 201 R--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA-LEGLCNL 257

Query: 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEW---------- 282
            +             +I      L ++ + +L    +  ++ +   NF W          
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKF 316

Query: 283 ----------LETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
                     L+ L  + NK   +   S   L  +  L+LS N LS +   +      
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 54/338 (15%), Positives = 100/338 (29%), Gaps = 45/338 (13%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGF-----NFPAT 55
           +   L+ L +    I       ++     L+ LD++ N+++      L           +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 56  VDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP-LLFSNSSFLYILD----- 109
           +DLS N         I        +L  L + NN  S  +        + L +       
Sbjct: 182 LDLSLNPMN-----FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 110 -MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG---ELPLSLKNCTFMESLDLGDNNLSG 165
             +  +L      ++  L  L     R  YL     ++       T + S  L    +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE- 295

Query: 166 NIPAWIGASMPGLLHILDLSHNDLSGFIPP--RVGNLSDMKVEPPKSVQHEGRLRVVTKG 223
            +  +        L +++              +    +  K     S      L      
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF---- 351

Query: 224 SERKYFTTLYLVNLLDLSSTNLSAE--IPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE 281
                         LDLS   LS +            L  L+LS N ++  +       E
Sbjct: 352 --------------LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 396

Query: 282 WLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNLS 318
            LE LD   + L      S+  SL  + +L++S+ +  
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 57/346 (16%), Positives = 100/346 (28%), Gaps = 41/346 (11%)

Query: 3   TELRTLVLNKARISDTIPDWF---WQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLS 59
           T L  L L+  +I            Q+ L    LD++ N +    P +        + L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 60  SNNFEGRLPLCIPKSIGNLKQL---ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           +N     +     + +  L+     +    +  NL             L I +     L 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 117 GSIPESIGS---LRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGA 173
             + + I     L  +    L +  +      S       + L+L +             
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFG-----QFPT 321

Query: 174 SMPGLLHILDLSHNDLSGFIPPRVG-------NLSDMKVE----PPKSVQHEGRLRVVTK 222
                L  L  + N         V        +LS   +       +S      L+ +  
Sbjct: 322 LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 223 GSERKYFTTLY-----LVNL--LDLSSTNLSAEIPAE--LTSLVHLGTLNLSHNHLVGKI 273
                   T+      L  L  LD   +NL  ++       SL +L  L++SH H     
Sbjct: 381 SF--NGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 274 PEEIGNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNLS 318
                    LE L ++ N    +  P +   L  +  L+LS   L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 15/197 (7%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA---TVDLS 59
             L+ L     +  +        L  +L+ LD++ N L  +   S           +DLS
Sbjct: 325 KSLKRLTFTSNKGGNAFS--EVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSGS 118
            N         +  +   L+QL  L   ++NL       +F +   L  LD+S+     +
Sbjct: 382 FNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 119 IPESIGSLRTLRFLVLRNNYLSGEL-PLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
                  L +L  L +  N       P        +  LDL    L   +      S+  
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSS 495

Query: 178 LLHILDLSHNDLSGFIP 194
            L +L+++ N L     
Sbjct: 496 -LQVLNMASNQLKSVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
            +L  L    + +        +     L  LD+++   R    N +     +   + ++ 
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAG 454

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N+F+       P     L+ L  L +S   L    P  F++ S L +L+M++N L     
Sbjct: 455 NSFQENFL---PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 121 ESIGSLRTLRFLVLRNN 137
                L +L+ + L  N
Sbjct: 512 GIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           +   L  L ++           F  LS +L+ L +A N  +      +         +DL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
           S    E +L    P +  +L  L  L +++N L      +F   + L  + +  N    S
Sbjct: 478 SQCQLE-QLS---PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

Query: 119 IP 120
            P
Sbjct: 534 CP 535

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 9e-19
 Identities = 49/262 (18%), Positives = 89/262 (33%), Gaps = 41/262 (15%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           +L  NN +  +      +  +L  L  L +  N++       F+  + L  L++ +N L+
Sbjct: 81  NLMENNIQ-MIQ---ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                +   L  LR L LRNN +      +      +  LDLG+      I       + 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
             L  L+L   ++   +P                                   T L  + 
Sbjct: 197 N-LKYLNLGMCNIK-DMP---------------------------------NLTPLVGLE 221

Query: 237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
            L++S  +     P     L  L  L + ++ +             L  L+L+ N LS S
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280

Query: 297 IPPSM-ASLIFMNHLNLSYNNL 317
           +P  +   L ++  L+L +N  
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 18/241 (7%)

Query: 80  QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYL 139
           Q   +V +   LS E+P    ++     L++  N++     ++   L  L  L L  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV-G 198
                 +      + +L+L DN L+  IP+     +  L   L L +N +   IP     
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRE-LWLRNNPIE-SIPSYAFN 168

Query: 199 NLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVH 258
            +  +       +    +L  +++G+    F  L+ +  L+L   N+  ++P  LT LV 
Sbjct: 169 RVPSLMRL---DLGELKKLEYISEGA----FEGLFNLKYLNLGMCNIK-DMPN-LTPLVG 219

Query: 259 LGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNL 317
           L  L +S NH     P        L+ L +  +++S  I  +    L  +  LNL++NNL
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL 278

Query: 318 S 318
           S
Sbjct: 279 S 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 11/189 (5%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
               L TL L    ++      F  LS  L EL +  N +   +P+      P+   +DL
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLS-KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
                   +      +   L  L  L +   N+  ++P   +    L  L+MS N     
Sbjct: 179 GELKKLEYIS---EGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEI 233

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
            P S   L +L+ L + N+ +S     +      +  L+L  NNLS ++P  +   +   
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRY- 291

Query: 179 LHILDLSHN 187
           L  L L HN
Sbjct: 292 LVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 11/164 (6%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVA-YNELRGRVPNSLGFNFPA--TVDLS 59
           ++LR L L    I       F ++  +L  LD+    +L   +             ++L 
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLG 204

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
             N +  +P     ++  L  L  L +S N+     P  F   S L  L + N+ +S   
Sbjct: 205 MCNIK-DMP-----NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163
             +   L +L  L L +N LS           ++  L L  N  
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 64/276 (23%), Positives = 101/276 (36%), Gaps = 56/276 (20%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           D+SSN             +  L  L +L+ +NN +S   PL     + L  L ++ N L 
Sbjct: 183 DISSNKVSD------ISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLK 234

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                ++ SL  L  L L NN +S   PLS    T +  L LG N +S NI    G +  
Sbjct: 235 D--IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTA- 288

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
             L  L+L+ N L    P  + NL ++                                 
Sbjct: 289 --LTNLELNENQLEDISP--ISNLKNLTY------------------------------- 313

Query: 237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
            L L   N+S   P  ++SL  L  L   +N +       + N   +  L    N++S  
Sbjct: 314 -LTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDL 368

Query: 297 IPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLND 332
            P  +A+L  +  L L+    +    N     ++ +
Sbjct: 369 TP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 51/329 (15%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
           T+L  +++N  +I+D  P     L+  L  L +  N++   +           ++LSSN 
Sbjct: 90  TKLVDILMNNNQIADITP--LANLT-NLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNT 145

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                      ++  L  L  L   N  ++   PL  +N + L  LD+S+N +S      
Sbjct: 146 ISD------ISALSGLTSLQQLSFGNQ-VTDLKPL--ANLTTLERLDISSNKVSD--ISV 194

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182
           +  L  L  L+  NN +S   PL     T ++ L L  N L  +I      +    L  L
Sbjct: 195 LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLK-DIGTLASLTN---LTDL 248

Query: 183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL----YLVNL- 237
           DL++N +S   P  +  L+ +             L++          + +     L  L 
Sbjct: 249 DLANNQISNLAP--LSGLTKLTE-----------LKL-----GANQISNISPLAGLTALT 290

Query: 238 -LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296
            L+L+   L    P  +++L +L  L L  N++    P  + +   L+ L    NK+S  
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD- 345

Query: 297 IPPSMASLIFMNHLNLSYNNLSGEIPNTN 325
              S+A+L  +N L+  +N +S   P  N
Sbjct: 346 -VSSLANLTNINWLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 51/262 (19%), Positives = 105/262 (40%), Gaps = 33/262 (12%)

Query: 74  SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
           +   L + +  V+   N++  +    ++   +  L      +     + +  L  L  + 
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGI--KSIDGVEYLNNLTQIN 74

Query: 134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLSHNDLSG 191
             NN L+   PL   N T +  + + +N ++   P      +  L  L  L L +N ++ 
Sbjct: 75  FSNNQLTDITPLK--NLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITD 126

Query: 192 FIPPRVGNLSDMK-----------VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240
             P  + NL+++            +     +    +L    + ++ K    L  +  LD+
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184

Query: 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPS 300
           SS  +S    + L  L +L +L  ++N +    P  +G    L+ L L+ N+L      +
Sbjct: 185 SSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGT 238

Query: 301 MASLIFMNHLNLSYNNLSGEIP 322
           +ASL  +  L+L+ N +S   P
Sbjct: 239 LASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 68/320 (21%), Positives = 122/320 (38%), Gaps = 61/320 (19%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
            ++ TL  ++  I     D    L+  L +++ + N+L   +           + +++N 
Sbjct: 46  DQVTTLQADRLGIKS--IDGVEYLN-NLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQ 101

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                       + NL  L  L + NN ++   PL   N + L  L++S+N++S     +
Sbjct: 102 IAD------ITPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--ISA 151

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182
           +  L +L+ L   N          L N T +E LD+  N +S +I     A +  L   L
Sbjct: 152 LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVS-DISVL--AKLTNL-ESL 204

Query: 183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS 242
             ++N +S   P  +G L+++                                  L L+ 
Sbjct: 205 IATNNQISDITP--LGILTNLDE--------------------------------LSLNG 230

Query: 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMA 302
             L       L SL +L  L+L++N +    P  +     L  L L  N++S   P  +A
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284

Query: 303 SLIFMNHLNLSYNNLSGEIP 322
            L  + +L L+ N L    P
Sbjct: 285 GLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 36/293 (12%)

Query: 30  LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN 89
             +  +    +   V  +   +   T+       +          +  L  L  +  SNN
Sbjct: 26  KMKTVLGKTNVTDTVSQT-DLDQVTTLQADRLGIK------SIDGVEYLNNLTQINFSNN 78

Query: 90  NLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKN 149
            L+   PL   N + L  + M+NN ++   P  + +L  L  L L NN ++   PL   N
Sbjct: 79  QLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--N 132

Query: 150 CTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK 209
            T +  L+L  N +S +I A  G +    L  L   +  ++   P  + NL+ ++     
Sbjct: 133 LTNLNRLELSSNTIS-DISALSGLT---SLQQLSFGNQ-VTDLKP--LANLTTLERL--- 182

Query: 210 SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL 269
            +          K S+      L  +  L  ++  +S   P  L  L +L  L+L+ N L
Sbjct: 183 DISS-------NKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233

Query: 270 VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322
             K    + +   L  LDL+ N++S   P  ++ L  +  L L  N +S   P
Sbjct: 234 --KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 62/306 (20%), Positives = 114/306 (37%), Gaps = 49/306 (16%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
             T L +L+    +ISD  P     L+  LDEL +  N+L+     +L  +      +DL
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKD--IGTLA-SLTNLTDLDL 250

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS 118
           ++N             +  L +L  L +  N +S   PL  +  + L  L+++ N L   
Sbjct: 251 ANNQISN------LAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDI 302

Query: 119 IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178
            P  I +L+ L +L L  N +S   P+S  + T ++ L   +N +S         +    
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD----VSSLANLTN 354

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVT------KGSERKYFTTL 232
           ++ L   HN +S   P  + NL+              R+  +         +   Y   +
Sbjct: 355 INWLSAGHNQISDLTP--LANLT--------------RITQLGLNDQAWTNAPVNYKANV 398

Query: 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK 292
            + N +   +  L    PA ++        +++ N       E    F    T+      
Sbjct: 399 SIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTT 455

Query: 293 LSGSIP 298
            SG++ 
Sbjct: 456 FSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 61/318 (19%), Positives = 105/318 (33%), Gaps = 58/318 (18%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           N T L  L ++  ++SD       +L+  L+ L    N++   +           + L+ 
Sbjct: 175 NLTTLERLDISSNKVSD--ISVLAKLT-NLESLIATNNQISD-ITPLGILTNLDELSLNG 230

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP 120
           N  +         ++ +L  L  L ++NN +S   PL  S  + L  L +  N +S   P
Sbjct: 231 NQLKD------IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 282

Query: 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180
             +  L  L  L L  N L    P+S  N   +  L L  NN+S   P     S    L 
Sbjct: 283 --LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP----VSSLTKLQ 334

Query: 181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240
            L   +N +S      + NL+++                                  L  
Sbjct: 335 RLFFYNNKVSDVSS--LANLTNINW--------------------------------LSA 360

Query: 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPS 300
               +S   P  L +L  +  L L+             N     T+      L    P +
Sbjct: 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPAT 416

Query: 301 MASLIFMNHLNLSYNNLS 318
           ++        ++++N  S
Sbjct: 417 ISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
             L  TN++  +    T L  + TL      +  K  + +     L  ++ S N+L+   
Sbjct: 29  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 298 PPSMASLIFMNHLNLSYNNLSGEIPNTN 325
           P  + +L  +  + ++ N ++   P  N
Sbjct: 85  P--LKNLTKLVDILMNNNQIADITPLAN 110

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 43/263 (16%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           +L  N  +  +      S  +L+ L  L +S N++       F+  + L  L++ +N L+
Sbjct: 70  NLHENQIQ-IIK---VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 117 GSIPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM 175
            +IP      L  L+ L LRNN +      +      +  LDLG+      I       +
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 176 PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV 235
              L  L+L+  +L   IP                                   T L  +
Sbjct: 185 SN-LRYLNLAMCNLR-EIP---------------------------------NLTPLIKL 209

Query: 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
           + LDLS  +LSA  P     L+HL  L +  + +         N + L  ++L+ N L+ 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 296 SIPPSM-ASLIFMNHLNLSYNNL 317
            +P  +   L  +  ++L +N  
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 20/242 (8%)

Query: 80  QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYL 139
           Q   ++    NL  E+P   S +    +L++  N +      S   LR L  L L  N++
Sbjct: 44  QFSKVICVRKNLR-EVPDGISTN--TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV-G 198
                 +      + +L+L DN L+  IP      +  L   L L +N +   IP     
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKL-KELWLRNNPIE-SIPSYAFN 157

Query: 199 NLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVH 258
            +  ++      +    RL  +++G+    F  L  +  L+L+  NL  EIP  LT L+ 
Sbjct: 158 RIPSLRRL---DLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLR-EIPN-LTPLIK 208

Query: 259 LGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNN 316
           L  L+LS NHL   I          L+ L + ++++   I  +   +L  +  +NL++NN
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266

Query: 317 LS 318
           L+
Sbjct: 267 LT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 14/200 (7%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
           +   L  L L++  I       F  L+  L+ L++  N L   +PN           + L
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLT-TIPNGAFVYLSKLKELWL 143

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSG 117
            +N  E  +P     +   +  L  L +        I    F   S L  L+++  +L  
Sbjct: 144 RNNPIE-SIP---SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
            IP ++  L  L  L L  N+LS   P S +    ++ L +  + +   I      ++  
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQS 256

Query: 178 LLHILDLSHNDLSGFIPPRV 197
           L+  ++L+HN+L+  +P  +
Sbjct: 257 LVE-INLAHNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 31/188 (16%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
               L TL L   R++      F  LS  L EL +  N +   +P+      P+   +DL
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLL-------------------- 98
                   +      +   L  L  L ++  NL  EIP L                    
Sbjct: 168 GELKRLSYIS---EGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 99  ---FSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMES 155
              F     L  L M  + +      +  +L++L  + L +N L+            +E 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 156 LDLGDNNL 163
           + L  N  
Sbjct: 284 IHLHHNPW 291

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 37/274 (13%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           DL +N     +         NLK L TL++ NN +S   P  F+    L  L +S N L 
Sbjct: 58  DLQNNKIT-EIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL-SGNIPAWIGASM 175
             +PE     +TL+ L +  N ++            M  ++LG N L S  I       M
Sbjct: 114 -ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 176 PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ----HEGRLRVVTKGSERKYFTT 231
              L  + ++  +++  IP  +          P S+        ++  V   S       
Sbjct: 171 KK-LSYIRIADTNITT-IPQGL----------PPSLTELHLDGNKITKVDAAS----LKG 214

Query: 232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN 291
           L  +  L LS  ++SA     L +  HL  L+L++N LV K+P  + + ++++ + L  N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 292 KLSGSIPPSM-------ASLIFMNHLNLSYNNLS 318
            +S +I  +              + ++L  N + 
Sbjct: 274 NIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 59/303 (19%), Positives = 107/303 (35%), Gaps = 57/303 (18%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSS 60
           N   L TL+L   +IS   P  F  L   L+ L ++ N+L+  +P  +       + +  
Sbjct: 74  NLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLK-ELPEKM-PKTLQELRVHE 130

Query: 61  NNFEGRLPLCIPKSI-GNLKQLITLVISNNNLSGEI--PLLFSNSSFLYILDMSNNSLSG 117
           N         + KS+   L Q+I + +  N L         F     L  + +++ +++ 
Sbjct: 131 NEIT-----KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
           +IP+  G   +L  L L  N ++     SLK    +  L L  N++S  +     A+ P 
Sbjct: 185 TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPH 241

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
           L   L L++N L   +P  + +   ++V                                
Sbjct: 242 L-RELHLNNNKLV-KVPGGLADHKYIQV-------------------------------- 267

Query: 238 LDLSSTNLSA------EIPAELTSLVHLGTLNLSHNHL-VGKIPEEI-GNFEWLETLDLS 289
           + L + N+SA        P   T       ++L  N +   +I             + L 
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 290 KNK 292
             K
Sbjct: 328 NYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 24/241 (9%)

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLS 146
           S+  L  ++P          +LD+ NN ++        +L+ L  L+L NN +S   P +
Sbjct: 39  SDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95

Query: 147 LKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV-GNLSDMKV 205
                 +E L L  N L       +   MP  L  L +  N+++  +   V   L+ M  
Sbjct: 96  FAPLVKLERLYLSKNQLKE-----LPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMI- 148

Query: 206 EPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265
                V   G   + + G E   F  +  ++ + ++ TN++  IP  L     L  L+L 
Sbjct: 149 -----VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 200

Query: 266 HNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPP-SMASLIFMNHLNLSYNNLSGEIPN 323
            N +  K+          L  L LS N +S ++   S+A+   +  L+L+ N L  ++P 
Sbjct: 201 GNKI-TKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 324 T 324
            
Sbjct: 258 G 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL 288
           F  L  ++ L L +  +S   P     LV L  L LS N L  ++PE++   + L+ L +
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRV 128

Query: 289 SKNKLSGSIPPSM-ASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
            +N+++  +  S+   L  M  + L  N L         FQ + 
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 48/269 (17%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            +  +S      +P  IP S         L + +N L      +F   + L  L +S+N 
Sbjct: 11  EIRCNSKGLT-SVPTGIPSS------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 115 LS--GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIG 172
           LS  G   +S     +L++L L  N +   +  +      +E LD   +NL       + 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 173 ASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL 232
            S+   L  LD+SH          +                               F  L
Sbjct: 123 LSLRN-LIYLDISHTHTR-VAFNGI-------------------------------FNGL 149

Query: 233 YLVNLLDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSK 290
             + +L ++  +       +  T L +L  L+LS   L  ++      +   L+ L++S 
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSH 208

Query: 291 NKLSGSIPPSM-ASLIFMNHLNLSYNNLS 318
           N    S+       L  +  L+ S N++ 
Sbjct: 209 NNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 9/166 (5%)

Query: 3   TELRTLVLNKARISDTIP-DWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLS 59
            +L  L    + +        F  L   L  LD+++   R    N +     +   + ++
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMA 158

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
            N+F+       P     L+ L  L +S   L    P  F++ S L +L+MS+N+     
Sbjct: 159 GNSFQENFL---PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKN-CTFMESLDLGDNNLS 164
                 L +L+ L    N++       L++  + +  L+L  N+ +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL--VGKIPEEIGNFEWLETLDLSKNKLSG 295
           L+L S  L +        L  L  L+LS N L   G   +       L+ LDLS N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 91

Query: 296 SIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
           ++  +   L  + HL+  ++NL  ++   + F +L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLR 126

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 5e-16
 Identities = 62/280 (22%), Positives = 92/280 (32%), Gaps = 52/280 (18%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
           DL +N+    L          L+ L  LV+ NN +S      FS    L  L +S N L 
Sbjct: 60  DLQNNDIS-ELR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL-SGNIPAWIGASM 175
             IP       +L  L + +N +             M  +++G N L +          +
Sbjct: 116 -EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 176 PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV 235
              L+ L +S   L+G IP  +                                 TL   
Sbjct: 173 K--LNYLRISEAKLTG-IPKDL-------------------------------PETL--- 195

Query: 236 NLLDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKL 293
           N L L    +   I  E L     L  L L HN +   I          L  L L  NKL
Sbjct: 196 NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKL 253

Query: 294 SGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDP 333
           S  +P  +  L  +  + L  NN++ ++   N F  +   
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNIT-KVGV-NDFCPVGFG 290

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 62/241 (25%), Positives = 95/241 (39%), Gaps = 25/241 (10%)

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLS 146
           S+  L   +P   S      +LD+ NN +S    +    L+ L  LVL NN +S     +
Sbjct: 41  SDLGLK-AVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97

Query: 147 LKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV-GNLSDMKV 205
                 ++ L +  N+L   IP     ++P  L  L +  N +   +P  V   L +M  
Sbjct: 98  FSPLRKLQKLYISKNHLV-EIP----PNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMN- 150

Query: 206 EPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265
                    G   +   G E   F  L L   L +S   L+  IP +L     L  L+L 
Sbjct: 151 -----CIEMGGNPLENSGFEPGAFDGLKLN-YLRISEAKLT-GIPKDL--PETLNELHLD 201

Query: 266 HNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPP-SMASLIFMNHLNLSYNNLSGEIPN 323
           HN +   I  E    +  L  L L  N++   I   S++ L  +  L+L  N LS  +P 
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 324 T 324
            
Sbjct: 259 G 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 53/301 (17%), Positives = 98/301 (32%), Gaps = 58/301 (19%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
             L  LVL   +IS      F  L   L +L ++ N L   +P +L  +    + +  N 
Sbjct: 78  QHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNR 134

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEI--PLLFSNSSFLYILDMSNNSLSGSIP 120
              ++P         L+ +  + +  N L      P  F     L  L +S   L+  IP
Sbjct: 135 IR-KVP---KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIP 188

Query: 121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180
           +      TL  L L +N +       L   + +  L LG N +   I     + +P L  
Sbjct: 189 K--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTL-R 244

Query: 181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240
            L L +N LS  +P  + +L  ++V                                + L
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQV--------------------------------VYL 271

Query: 241 SSTNLSAEIPAE-------LTSLVHLGTLNLSHNHL-VGKIPEEI-GNFEWLETLDLSKN 291
            + N++ ++               +   ++L +N +   ++             +     
Sbjct: 272 HTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

Query: 292 K 292
           K
Sbjct: 331 K 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
             ++L  L L   +I          L  TL EL +  N+L  RVP  L  +      V L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS-RVPAGL-PDLKLLQVVYL 271

Query: 59  SSNNFE--GRLPLCIPKSIGNLKQLITLVISNNNLSGEI--PLLFSNSSFLYILDMSNN 113
            +NN    G    C             + + NN +      P  F   +    +   N 
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 74/364 (20%), Positives = 113/364 (31%), Gaps = 57/364 (15%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
             +  + L+   I++     F +L   L  L V        + N+      +   + L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 61  NNFEGRLPLCIPKSIGNLKQLITLVISNNNL-SGEIPL-LFSNSSFLYILDMSNNSLSGS 118
           N F  +L      +   L  L  L ++  NL    +    F   + L +L + +N++   
Sbjct: 89  NQFL-QLE---TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 119 IPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFM--ESLDLGDNNLSGNIPAWIGASM 175
            P S   ++R    L L  N +       L N        L L    L      W+G   
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 176 PGL------LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKY- 228
            G       +  LDLS N     +  R  +           + +   +      +  K  
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 229 ----FTTLYLVNL--LDLSS---TNLSAEIPAELT---------------------SLVH 258
               F  L    +   DLS      L   + +  T                      L H
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324

Query: 259 LGTLNLSHNHLVGKIPEEIGNFEW---LETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSY 314
           L  LNLS N L G I      FE    LE LDLS N +  ++       L  +  L L  
Sbjct: 325 LLKLNLSQNFL-GSIDS--RMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDT 380

Query: 315 NNLS 318
           N L 
Sbjct: 381 NQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 60/347 (17%), Positives = 116/347 (33%), Gaps = 74/347 (21%)

Query: 3   TELRTLVLNKARISDTI--PDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
             L  L L +  +   +   ++F  L+ +L+ L +  N ++   P S   N      +DL
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 59  SSNNFEGRLPLCIPKSI-----------GNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107
           + N  +      I +               L  +    ++   L  E       ++ +  
Sbjct: 162 TFNKVK-----SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 108 LDMSNNSLSGSIPESI---GSLRTLRFLVLRNNY-----LSGELPLSLKNCTFM------ 153
           LD+S N    S+ +      +   ++ L+L N+Y               N TF       
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 154 -ESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ 212
            ++ DL  + +   +   + +     L  L L+ N+++  I                   
Sbjct: 277 VKTCDLSKSKIF-ALLKSVFSHFTD-LEQLTLAQNEIN-KIDDNA--------------- 318

Query: 213 HEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGK 272
                           F  L  +  L+LS   L +       +L  L  L+LS+NH+   
Sbjct: 319 ----------------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RA 361

Query: 273 IPEEI-GNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNL 317
           + ++       L+ L L  N+L  S+P  +   L  +  + L  N  
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 48/265 (18%), Positives = 78/265 (29%), Gaps = 47/265 (17%)

Query: 83  TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI-GSLRTLRFLVLRNNYLSG 141
            + +S N+++      FS    L  L +   +    I  +    L +L  L L  N    
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 142 ELPLSLKNCTFMESLDLGDNNL-SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNL 200
               +      +E L L   NL    +       +  L   L L  N++    P      
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM-LVLRDNNIKKIQPASF--- 149

Query: 201 SDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLV--H 258
                                       F  +   ++LDL+   + +    +L +    H
Sbjct: 150 ----------------------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181

Query: 259 LGTLNLSHNHL-----VGKIPEEIGNF---EWLETLDLSKNKLSGSIPPSMASLIFMN-- 308
              L LS   L          E+ GN      + TLDLS N    S+       I     
Sbjct: 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 309 -HLNLSYNNLSGEIPNTNQFQTLND 332
             L LS +   G       F+  ++
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDN 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 9/233 (3%)

Query: 94  EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP---LSLKNC 150
           ++ L     S  Y+L   +          I    +L+ L +R   +   +    L +   
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 151 TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS 210
           + ++ L L +  ++G  P  +  +    L+IL+L +   +      +  L        K 
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKV 153

Query: 211 VQ-HEGRLRVVTKGSERKY--FTTLYL-VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSH 266
           +   +      +    R +   +TL L  N        +SA  P +  +L  L   N   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 267 NHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF-MNHLNLSYNNLS 318
               G           L+ LDLS N L  +           +N LNLS+  L 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 3e-13
 Identities = 51/272 (18%), Positives = 88/272 (32%), Gaps = 44/272 (16%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP--LLFSNSSFLYILDMSNNS 114
            + +     R+     + +  +  L  L + N  ++G  P  LL +    L IL++ N S
Sbjct: 74  TVRAARIPSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 115 LSGSIPE----SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW 170
            +                L+ L +   +        ++    + +LDL DN   G     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 171 IGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKY 228
                     L +L L +  +           +              +L+          
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-----------QLQG--------- 232

Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTS-LVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD 287
                    LDLS  +L     A        L +LNLS   L  ++P+ +     L  LD
Sbjct: 233 ---------LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLD 280

Query: 288 LSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319
           LS N+L  +  PS   L  + +L+L  N    
Sbjct: 281 LSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 50/251 (19%), Positives = 73/251 (29%), Gaps = 49/251 (19%)

Query: 56  VDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSF----LYILDMS 111
           + L +    G  P   P        L  L + N + +     L     +    L +L ++
Sbjct: 100 LTLENLEVTGTAP--PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 112 NNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNC----TFMESLDLGDNNLSGNI 167
                    E +     L  L L +N   GE  L    C      ++ L L +  +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TP 216

Query: 168 PAWIGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSE 225
                A       L  LDLSHN L                    S     +L        
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAP-------------SCDWPSQLNS------ 257

Query: 226 RKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLET 285
                       L+LS T L  ++P  L +   L  L+LS+N L    P        +  
Sbjct: 258 ------------LNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDR-NPS-PDELPQVGN 300

Query: 286 LDLSKNKLSGS 296
           L L  N    S
Sbjct: 301 LSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 8e-12
 Identities = 43/198 (21%), Positives = 57/198 (28%), Gaps = 21/198 (10%)

Query: 5   LRTLVLNKARISDT---IPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLS 59
           L  L L     +     + +    L   L  L +A               FPA  T+DLS
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLS 181

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNN---LSGEIPLLFSNSSFLYILDMSNNSLS 116
            N   G   L           L  L + N      SG    L +    L  LD+S+NSL 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 117 GSIPESIGS-LRTLRFLVLRNNYLSGELPLSLKNCTF--MESLDLGDNNLSGNIPAWIGA 173
            +           L  L L    L       +       +  LDL  N L    P+    
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSVLDLSYNRLDR-NPSPDEL 295

Query: 174 SMPGLLHILDLSHNDLSG 191
                +  L L  N    
Sbjct: 296 P---QVGNLSLKGNPFLD 310

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 41/263 (15%), Positives = 77/263 (29%), Gaps = 46/263 (17%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSL 115
                     +      +      L  + IS N++   I   +FSN   L+ + +   + 
Sbjct: 36  RFVLTKLR-VIQ---KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 116 SGSIPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
              I      +L  L++L++ N  +     +   +      LD+ DN     I       
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
           +     IL L+ N +   I                                   F    L
Sbjct: 152 LSFESVILWLNKNGIQE-IHNSA-------------------------------FNGTQL 179

Query: 235 VNLLDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNK 292
             L    + NL  E+P +          L++S   +   +P     N + L        K
Sbjct: 180 DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

Query: 293 LSGSIPPSMASLIFMNHLNLSYN 315
                 P++  L+ +   +L+Y 
Sbjct: 238 ----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 39/270 (14%), Positives = 75/270 (27%), Gaps = 67/270 (24%)

Query: 52  FPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMS 111
                    +     +P  +P++       I L      L       FS    L  +++S
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRN------AIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 62

Query: 112 NNSLSGSIPESI-GSLRTLRFLVLRN-NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
            N +   I   +  +L  L  + +   N L    P + +N   ++ L + +  +  ++P 
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD 121

Query: 170 WIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYF 229
                    +  LD+  N                                          
Sbjct: 122 VHKIHSLQKVL-LDIQDN------------------------------------------ 138

Query: 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
             + +  +   S   LS E             L L+ N +  +I     N   L+ L+LS
Sbjct: 139 --INIHTIERNSFVGLSFE----------SVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 290 KNKLSGSIPP-SMASLIFMNHLNLSYNNLS 318
            N     +P            L++S   + 
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH 215

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 54/246 (21%), Positives = 82/246 (33%), Gaps = 44/246 (17%)

Query: 51  NFPATV---DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107
             PA      L  N     +P     S    + L  L + +N L+      F+  + L  
Sbjct: 29  GIPAASQRIFLHGNRIS-HVP---AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 108 LDMSNNSLSGSIPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
           LD+S+N+   S+  +    L  L  L L    L    P   +    ++ L L DN L   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 167 IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
           +P      +   L  L L  N +S  +P R                              
Sbjct: 144 LPDDTFRDLGN-LTHLFLHGNRIS-SVPERA----------------------------- 172

Query: 227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLET 285
             F  L+ ++ L L    ++   P     L  L TL L  N+L   +P E       L+ 
Sbjct: 173 --FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQY 229

Query: 286 LDLSKN 291
           L L+ N
Sbjct: 230 LRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 48/235 (20%), Positives = 77/235 (32%), Gaps = 42/235 (17%)

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLS 146
               L   +P+    +     + +  N +S     S  + R L  L L +N L+     +
Sbjct: 19  PQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 147 LKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVE 206
                 +E LDL DN    ++       +   LH L L    L   + P +         
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGR-LHTLHLDRCGLQ-ELGPGL--------- 124

Query: 207 PPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE-LTSLVHLGTLNLS 265
                                 F  L  +  L L    L   +P +    L +L  L L 
Sbjct: 125 ----------------------FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 266 HNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNLS 318
            N +   +PE        L+ L L +N+++  + P     L  +  L L  NNLS
Sbjct: 162 GNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 9e-12
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 13/191 (6%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDL 58
               L  L L+   ++      F  L+  L++LD++ N     V  +         T+ L
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 59  SSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP-LLFSNSSFLYILDMSNNSLSG 117
                +  L    P     L  L  L + +N L   +P   F +   L  L +  N +S 
Sbjct: 113 DRCGLQ-ELG---PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS- 166

Query: 118 SIPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
           S+PE     L +L  L+L  N ++   P + ++   + +L L  NNLS  +P    A + 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLR 225

Query: 177 GLLHILDLSHN 187
            L + L L+ N
Sbjct: 226 ALQY-LRLNDN 235

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.7 bits (168), Expect = 6e-13
 Identities = 52/304 (17%), Positives = 104/304 (34%), Gaps = 42/304 (13%)

Query: 18  TIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGN 77
            +       +LTL+ ++  +N    R+   +         +S+   +G+L        G 
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 78  -LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
            LK L    + ++        ++   S + I + + +            +     L   N
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGA--SMPGLLHILDLSHNDLSGFIP 194
           N L+  +  +  + T +E+L L  N L   +         M  L   LD+S N +S    
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ-LDISQNSVSYDEK 391

Query: 195 PRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT 254
                                              +    +  L++SS  L+  I   L 
Sbjct: 392 KGD-------------------------------CSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 255 SLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLS 313
             + +  L+L  N +   IP+++   E L+ L+++ N+L  S+P  +   L  +  + L 
Sbjct: 421 PRIKV--LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476

Query: 314 YNNL 317
            N  
Sbjct: 477 TNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 58/370 (15%), Positives = 124/370 (33%), Gaps = 58/370 (15%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATV---DLS 59
           ++LR L+++  RI       F      L+ LD+++N+L       +  +    +   DLS
Sbjct: 45  SKLRILIISHNRIQYLDISVFKFNQE-LEYLDLSHNKLV-----KISCHPTVNLKHLDLS 98

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSI 119
            N F+    L I K  GN+ QL  L +S  +L     L  ++ +   +L +   +     
Sbjct: 99  FNAFDA---LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG--E 153

Query: 120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL- 178
            E    L+      L   + + +    + + +     +L  +N+   +     +    + 
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 179 -----------------------------------LHILDLSHNDLSGFIPPRVGNLSDM 203
                                              +    +S+  L G +  R  + S  
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 204 KVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLN 263
            +   K++     +  V    +   +     +N+ + + +          + +     L+
Sbjct: 274 SL---KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 264 LSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM---ASLIFMNHLNLSYNNLSGE 320
            S+N L   + E  G+   LETL L  N+L   +         +  +  L++S N++S  
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS-Y 388

Query: 321 IPNTNQFQTL 330
                     
Sbjct: 389 DEKKGDCSWT 398

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 52/323 (16%), Positives = 94/323 (29%), Gaps = 47/323 (14%)

Query: 8   LVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRL 67
           +V    +    I D   +    L+  ++       +    L        +   +N     
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 68  PLCIPKSIGNLKQLI------TLVISNNNLSGEIPLLFSNSSF-----LYILDMSNNSLS 116
                 S   + QL+         ISN  L G++     + S      L I  + ++   
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 117 GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
                       +       +       L     +    LD  +N L+ +        + 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLT 348

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN 236
            L   L L  N L   +                                    T +  + 
Sbjct: 349 EL-ETLILQMNQLKE-LSKIAE-----------------------------MTTQMKSLQ 377

Query: 237 LLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
            LD+S  ++S +      +    L +LN+S N L   I   +     ++ LDL  NK+  
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK- 434

Query: 296 SIPPSMASLIFMNHLNLSYNNLS 318
           SIP  +  L  +  LN++ N L 
Sbjct: 435 SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 47/265 (17%), Positives = 87/265 (32%), Gaps = 14/265 (5%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            VD S N     +P  + +          L IS N +S        + S L IL +S+N 
Sbjct: 4   LVDRSKNGLI-HVPKDLSQK------TTILNISQNYISELWTSDILSLSKLRILIISHNR 56

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
           +           + L +L L +N L     +S      ++ LDL  N     +P      
Sbjct: 57  IQYLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFD-ALPICKEFG 112

Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
               L  L LS   L       + +L+  KV       +    +   +G +     +L++
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHI 170

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLG-TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293
           V   +     +       + +L        L  N     +          +  +L+ N +
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 294 SGSIPPSMASLIFMNHLNLSYNNLS 318
             +    +  L  + H  + Y ++S
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSIS 255

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 42/233 (18%), Positives = 68/233 (29%), Gaps = 38/233 (16%)

Query: 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
           IL++S N +S      I SL  LR L++ +N +        K    +E LDL  N L   
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 167 IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
                       L  LDLS N                                       
Sbjct: 85  SCHPTVN-----LKHLDLSFNAFDAL-------------------------------PIC 108

Query: 227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETL 286
           K F  +  +  L LS+T+L       +  L     L +          E+    +   T 
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTE 166

Query: 287 DLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN 339
            L     +      +  +      NL  +N+   + +      L+  +  + N
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 57/326 (17%), Positives = 107/326 (32%), Gaps = 58/326 (17%)

Query: 26  LSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83
           +SL +  LD+   EL       L         V L            I  ++     L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 84  LVISNNNLSGE-----IPLLFSNSSFLYILDMSNNSLS----GSIPESIGSLRTLRFLVL 134
           L + +N L        +  L + S  +  L + N  L+    G +  ++ +L TL+ L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 135 RNNYLSGE-----LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLSHN 187
            +N L            L     +E L L   +LS      + + +        L +S+N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSA 247
           D++      V  L     + P  ++                         L L S  +++
Sbjct: 181 DIN---EAGVRVLCQGLKDSPCQLEA------------------------LKLESCGVTS 213

Query: 248 E----IPAELTSLVHLGTLNLSHNHL----VGKIPEEIGNFEW-LETLDLSKNKLSGSIP 298
           +    +   + S   L  L L  N L    + ++   + +    L TL + +  ++    
Sbjct: 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273

Query: 299 PSMASLIFMN----HLNLSYNNLSGE 320
             +  ++        L+L+ N L  E
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELGDE 299

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 56/293 (19%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE-----IPLLFSNSSFLYILD 109
            + L   +        +   +        L +SNN+++          L  +   L  L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 110 MSNNSLS----GSIPESIGSLRTLRFLVLRNNYLSGE-----LPLSLKNCTFMESLDLGD 160
           + +  ++      +   + S  +LR L L +N L         P  L   + + +L + +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 161 NNLSGNIPAWIGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLR 218
             ++      +   +     L  L L+ N+L          L +  +EP   ++      
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELG---DEGARLLCETLLEPGCQLES----- 317

Query: 219 VVTKGSERKYFTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIP 274
                              L + S + +A       + L     L  L +S+N L     
Sbjct: 318 -------------------LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 275 EEIG-----NFEWLETLDLSKNKLSGSIPPSMASLIFMN----HLNLSYNNLS 318
            E+          L  L L+   +S S   S+A+ +  N     L+LS N L 
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 47/298 (15%), Positives = 86/298 (28%), Gaps = 61/298 (20%)

Query: 55  TVDLSSNNF--EGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPLLFSNSSFLYIL 108
            ++L SN     G   +       + K +  L + N  L+G     +         L  L
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 109 DMSNNSLSGSIPESIGSLR-----TLRFLVLRNNYLSGE----LPLSLKNCTFMESLDLG 159
            +S+N L  +  + +          L  L L    LS      L   L+     + L + 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 160 DNNLSGNIPAWIGA---SMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGR 216
           +N+++      +       P  L  L L    ++        +L  + V    S++    
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDLCGI-VASKASLRE--- 231

Query: 217 LRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE-----IPAELTSLVHLGTLNLSHNHL-- 269
                                L L S  L         P  L     L TL +    +  
Sbjct: 232 ---------------------LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270

Query: 270 --VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH-----LNLSYNNLSGE 320
              G +   +   E L+ L L+ N+L       +   +         L +   + +  
Sbjct: 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 59/329 (17%), Positives = 102/329 (31%), Gaps = 63/329 (19%)

Query: 1   NQTELRTLVLNKARISDTIPDWFWQL---SLTLDELDVAYNELRGRVPNSLGFNFPA--- 54
            Q  L  L L    +S    +    +        EL V+ N++       L         
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 55  ---TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE-----IPLLFSNSSFLY 106
               + L S          +   + +   L  L + +N L         P L   SS L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 107 ILDMSNNSLS----GSIPESIGSLRTLRFLVLRNNYLSGE------LPLSLKNCTFMESL 156
            L +    ++    G +   + +  +L+ L L  N L  E        L    C  +ESL
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ-LESL 318

Query: 157 DLGDNNLSGNIPAWIGASMPGL--LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHE 214
            +   + +    +   + +     L  L +S+N L       V  L     +P   ++  
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED---AGVRELCQGLGQPGSVLRV- 374

Query: 215 GRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHL- 269
                                  L L+  ++S      + A L +   L  L+LS+N L 
Sbjct: 375 -----------------------LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

Query: 270 ---VGKIPEEIGNFEW-LETLDLSKNKLS 294
              + ++ E +      LE L L     S
Sbjct: 412 DAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 48/303 (15%), Positives = 93/303 (30%), Gaps = 43/303 (14%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE-----IPLLFSNSSFLYILD 109
            + L +    G     +  ++  L  L  L +S+N L           L      L  L 
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 110 MSNNSLSGSIPESIGSL----RTLRFLVLRNNYLSGE----LPLSLKNCTF-MESLDLGD 160
           +   SLS +  E + S+       + L + NN ++      L   LK+    +E+L L  
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 161 NNLSGNIPAWIGASMPGLLHI--LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLR 218
             ++ +    +   +     +  L L  N L       +  L    + P   ++    L 
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDV---GMAELCPGLLHPSSRLRT---LW 262

Query: 219 VVTKG-SER--KYFTTLYLVN----LLDLSSTNLSAE-----IPAELTSLVHLGTLNLSH 266
           +   G + +       +         L L+   L  E         L     L +L +  
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 267 NHL----VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH-----LNLSYNNL 317
                         +    +L  L +S N+L  +    +   +         L L+  ++
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 318 SGE 320
           S  
Sbjct: 383 SDS 385

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 52/328 (15%), Positives = 108/328 (32%), Gaps = 24/328 (7%)

Query: 2   QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSN 61
                 L L    I     +     + T+  L    N L   V  ++  N    + LS+ 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF-SVQVNMSVNALGHLQLSNI 228

Query: 62  NFEGRLPLCIPKSIGNLKQLITLV-ISNNNLSGEIPLLFSNSSFLYI-----LDMSNNSL 115
                    +   +  L +  TL+ ++  ++            F +      L++ N ++
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 116 SGSIPESIG-----SLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW 170
           +  I          +L++L    ++N                M    L  ++        
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT--PFIHM 346

Query: 171 IGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230
           +    P     L+ + N  +  +      L  ++    +       L+   K +      
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG----LKNFFKVALM--TK 400

Query: 231 TLYLVNLLDLSSTNLSAEIPAELTSLV-HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
            +  +  LD+S  +L++       +    +  LNLS N L G +   +     ++ LDL 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458

Query: 290 KNKLSGSIPPSMASLIFMNHLNLSYNNL 317
            N++  SIP  +  L  +  LN++ N L
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 56/324 (17%), Positives = 119/324 (36%), Gaps = 17/324 (5%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGF-NFPA--TVDLS 59
           +ELR L L+  RI       F      L+ LDV++N L+     ++      +   +DLS
Sbjct: 76  SELRVLRLSHNRIRSLDFHVFLFNQD-LEYLDVSHNRLQ-----NISCCPMASLRHLDLS 129

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNL-SGEIPLLFSNSSFLYILDMSNNSLSGS 118
            N+F+  LP+C  K  GNL +L  L +S       ++  +        +LD+ +  + G 
Sbjct: 130 FNDFD-VLPVC--KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 119 IPESIGSLRT--LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMP 176
             ES+    T  L  +   N+  S ++ +S+     ++  ++  N+ +        + + 
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 177 GLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ--HEGRLRVVTKGSERKYFTTLYL 234
               +L+++   +       V         P + +   +      + +       T L  
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           + +  + +        A  +    +    LS +           +      L+ ++N  +
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 295 GSIPPSMASLIFMNHLNLSYNNLS 318
            S+    ++L  +  L L  N L 
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 47/293 (16%), Positives = 100/293 (34%), Gaps = 38/293 (12%)

Query: 26  LSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGN-LKQLITL 84
           L++TL  ++  +     ++           +++ +     R+           LK L+  
Sbjct: 252 LNVTLQHIETTWKCSV-KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 85  VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP 144
            + N         L+S  + + I  +S +           S  +  FL    N  +  + 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 145 LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK 204
                   +++L L  N L  N      A M   +  L+     L+        +  D  
Sbjct: 371 QGCSTLKRLQTLILQRNGLK-NFFK--VALMTKNMSSLETLDVSLNSLNS----HAYDRT 423

Query: 205 VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL 264
               +S+                          L+LSS  L+  +   L     +  L+L
Sbjct: 424 CAWAESILV------------------------LNLSSNMLTGSVFRCLPP--KVKVLDL 457

Query: 265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNN 316
            +N +   IP+++ + + L+ L+++ N+L  S+P  +   L  + ++ L  N 
Sbjct: 458 HNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 58/322 (18%), Positives = 105/322 (32%), Gaps = 32/322 (9%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSN 61
           T+L  L L+ A+           L L+   LD+    ++G    SL   N      +   
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 62  NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPE 121
           N    + + +     ++  L  L +SN  L+ E                +  +++    E
Sbjct: 206 NSLFSVQVNM-----SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 122 SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHI 181
           +        F       +     L++ N T  E +D  +   S              L I
Sbjct: 261 TTWKCSVKLFQFFWPRPVEY---LNIYNLTITERIDREEFTYSETALK--------SLMI 309

Query: 182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL--LD 239
             + +              ++M ++   S+     + +V   S           +   L+
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKM-LSISDTPFIHMVCPPS---------PSSFTFLN 359

Query: 240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHL--VGKIPEEIGNFEWLETLDLSKNKLSGSI 297
            +    +  +    ++L  L TL L  N L    K+     N   LETLD+S N L+   
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419

Query: 298 PPSMASLIF-MNHLNLSYNNLS 318
                +    +  LNLS N L+
Sbjct: 420 YDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGS 296
           L LS  ++S     +++ L  L  L LSHN +   +   +    + LE LD+S N+L  +
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 297 IPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTL 330
           I      +  + HL+LS+N+    +P   +F  L
Sbjct: 115 ISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNL 145

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 7e-12
 Identities = 45/276 (16%), Positives = 94/276 (34%), Gaps = 45/276 (16%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
              + I   +   +++  +    +  + +  +  +N+ +  S+ + I  L  +  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-----LHILDLSHNDLSG 191
           N L+   PL+  N   +  L L +N +           +  L     L  L L HN +S 
Sbjct: 75  NKLTDIKPLT--NLKNLGWLFLDENKIK---------DLSSLKDLKKLKSLSLEHNGIS- 122

Query: 192 FIPPRVGNLSDMKVEPPKSVQHEGRLRVV----TKGSERKYFTTLYLVNLLDLSSTNLSA 247
                +  L  +            +L  +     K ++    + L  ++ L L    +S 
Sbjct: 123 ----DINGLVHLP-----------QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS- 166

Query: 248 EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM 307
           +I   L  L  L  L LS NH+       +   + L+ L+L   +         ++L+  
Sbjct: 167 DIVP-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 308 NHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALC 343
           N +  +  +L       +       P++        
Sbjct: 224 NTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFT 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 57/356 (16%), Positives = 106/356 (29%), Gaps = 72/356 (20%)

Query: 5   LRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNF 63
           +   +     I    PD     +     + ++    +   V  +   N    +  ++++ 
Sbjct: 1   MGETITVSTPIKQIFPD----DAFAETIKDNLKKKSVTDAVTQN-ELNSIDQIIANNSDI 55

Query: 64  EGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI 123
           +  +     + I  L  +  L ++ N L+   PL  +N   L  L +  N +   +  S+
Sbjct: 56  K-SV-----QGIQYLPNVTKLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIK-DL-SSL 105

Query: 124 GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL----- 178
             L+ L+ L L +N +S ++   L +   +ESL LG+N ++          +  L     
Sbjct: 106 KDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT---------DITVLSRLTK 154

Query: 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238
           L  L L  N +S  +P                                     L  +  L
Sbjct: 155 LDTLSLEDNQISDIVP----------------------------------LAGLTKLQNL 180

Query: 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG--- 295
            LS  ++S ++   L  L +L  L L     + K      N     T+  +   L     
Sbjct: 181 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 296 -SIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKK 350
            S            HL    N +S                       L        
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 34/289 (11%)

Query: 44  VPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS 103
              SL  +       SS +    +P  + ++      + +L +SNN ++           
Sbjct: 24  NQASLSCDRNGICKGSSGSLN-SIPSGLTEA------VKSLDLSNNRITYISNSDLQRCV 76

Query: 104 FLYILDMSNNSLSGSIPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN 162
            L  L +++N ++ +I E    SL +L  L L  NYLS       K  + +  L+L  N 
Sbjct: 77  NLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 163 LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV----GNLSDMKVEPPKSVQHEGRLR 218
               +      S    L IL + + D    I  +       L ++++           L+
Sbjct: 136 YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI-------DASDLQ 187

Query: 219 VVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI- 277
                S      ++  V+ L L        +   +     +  L L    L      E+ 
Sbjct: 188 SYEPKS----LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 278 -------GNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319
                          + ++   L   +   +  +  +  L  S N L  
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 18/238 (7%)

Query: 102 SSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161
           +  +  LD+SNN ++      +     L+ LVL +N ++     S  +   +E LDL  N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVT 221
            LS N+ +     +  L   L+L  N             S +       V +      + 
Sbjct: 111 YLS-NLSSSWFKPLSSLTF-LNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 222 KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNF 280
           +      F  L  +  L++ +++L +  P  L S+ ++  L L     +  + E      
Sbjct: 167 RKD----FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT 221

Query: 281 EWLETLDLSKNKLSGSIPPSMASLIF--------MNHLNLSYNNLSGEIPNTNQFQTL 330
             +E L+L    L       +++             ++ ++  +L   +   NQ   L
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 40/203 (19%), Positives = 84/203 (41%), Gaps = 18/203 (8%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSS 60
             L+ LVL    I+    D F  L  +L+ LD++YN L   + +S      +   ++L  
Sbjct: 76  VNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLG 133

Query: 61  NNFEGRLPLCIPKSI--GNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSG 117
           N ++      + ++    +L +L  L + N +   +I    F+  +FL  L++  + L  
Sbjct: 134 NPYK-----TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 118 SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN----IPAWIGA 173
             P+S+ S++ +  L+L        L + +   + +E L+L D +L       +      
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 174 SMPGL--LHILDLSHNDLSGFIP 194
           S+        + ++   L   + 
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGS 296
           LDLS+  ++    ++L   V+L  L L+ N +   I E+   +   LE LDLS N LS +
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-N 114

Query: 297 IPPSM-ASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
           +  S    L  +  LNL  N     +  T+ F  L 
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 42/218 (19%), Positives = 81/218 (37%), Gaps = 20/218 (9%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNN 113
           T+ L   +    +P     +  NL  +  + +S +    ++    F N S +  +++ N 
Sbjct: 35  TLKLIETHLR-TIP---SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 114 SLSGSIPESI-GSLRTLRFLVLRNNYLSGELP--LSLKNCTFMESLDLGDNNLSGNIPAW 170
                I       L  L+FL + N  L    P    + +      L++ DN    +IP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 171 IGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230
               +      L L +N  +  +     N + +       +     L V+ K +    F 
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA---VYLNKNKYLTVIDKDA----FG 201

Query: 231 TLY-LVNLLDLSSTNLSAEIPAE-LTSLVHLGTLNLSH 266
            +Y   +LLD+S T+++  +P++ L  L  L   N   
Sbjct: 202 GVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 43/241 (17%)

Query: 81  LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI-GSLRTLRFLVLRNNYL 139
             TL +   +L       FSN   +  + +S +     +      +L  +  + +RN   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 140 SGELPLS-LKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV- 197
              +    LK    ++ L + +  L    P         +  IL+++ N     IP    
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 198 GNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLV 257
             L +  +                                L L +   +  +     +  
Sbjct: 152 QGLCNETLT-------------------------------LKLYNNGFT-SVQGYAFNGT 179

Query: 258 HLGTLNLSHNHLVGKIPEEI--GNFEWLETLDLSKNKLSGSIPP----SMASLIFMNHLN 311
            L  + L+ N  +  I ++   G +     LD+S+  ++ ++P      +  LI  N   
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

Query: 312 L 312
           L
Sbjct: 239 L 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 48/255 (18%)

Query: 83  TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVL-RNNYLSG 141
              ++  ++   IP   S       L +    L      +  +L  +  + +  +  L  
Sbjct: 15  DFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 142 ELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLS 201
               S  N + +  +++ +      I       +P LL  L + +  L  F         
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLKMF--------- 120

Query: 202 DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE----LTSLV 257
                                  +     +  +  +L+++       IP      L +  
Sbjct: 121 ----------------------PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE- 157

Query: 258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM-ASLI-FMNHLNLSYN 315
              TL L +N     +     N   L+ + L+KNK    I       +    + L++S  
Sbjct: 158 -TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 316 NLSGEIPNTNQFQTL 330
           +++  +P +   + L
Sbjct: 216 SVT-ALP-SKGLEHL 228

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 13/141 (9%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA---TVDLS 59
             L+ L +    +           +     L++  N     +P +          T+ L 
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 60  SNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP-LLFSN-SSFLYILDMSNNSLSG 117
           +N F       +     N  +L  + ++ N     I    F    S   +LD+S  S++ 
Sbjct: 165 NNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218

Query: 118 SIPESIGSLRTLRFLVLRNNY 138
           ++P     L  L+ L+ RN +
Sbjct: 219 ALPS--KGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGS 296
           L L  T+L        ++L ++  + +S +  + ++      N   +  +++   +    
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 297 IPPSM-ASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331
           I P     L  +  L +    L    P+  +  + +
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTD 130

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 56/267 (20%), Positives = 95/267 (35%), Gaps = 49/267 (18%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
           T      NF  ++P  +P S  NL       +S N L       F +   L +LD+S   
Sbjct: 11  TYQCMELNFY-KIPDNLPFSTKNLD------LSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 115 LSGSIPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGA 173
           +  +I +    SL  L  L+L  N +      +    + ++ L   + NL+ ++  +   
Sbjct: 64  IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121

Query: 174 SMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLY 233
            +  L   L+++HN +  F  P                                 F+ L 
Sbjct: 122 HLKTLKE-LNVAHNLIQSFKLPEY-------------------------------FSNLT 149

Query: 234 LVNLLDLSS---TNLSAEIPAELTSLVHLG-TLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
            +  LDLSS    ++       L  +  L  +L+LS N +   I         L+ L L 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALD 208

Query: 290 KNKLSGSIPP-SMASLIFMNHLNLSYN 315
            N+L  S+P      L  +  + L  N
Sbjct: 209 TNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEW---LETLDLSKNKLS 294
           LDLS   L         S   L  L+LS   +   I +  G ++    L TL L+ N + 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIED--GAYQSLSHLSTLILTGNPIQ 89

Query: 295 GSIPPSM-ASLIFMNHLNLSYNNLS 318
            S+     + L  +  L     NL+
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLA 113

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 38/242 (15%), Positives = 76/242 (31%), Gaps = 35/242 (14%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
           N    +              +     + L  LD  N+S++  +   I  L  L  L+  +
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTS 73

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPR 196
           N ++    L L   T +  L    N L+      +  +    L  L+   N L+     +
Sbjct: 74  NNITT---LDLSQNTNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKLTKLDVSQ 125

Query: 197 VGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSL 256
              L+ +                    +        +   L +L           ++T  
Sbjct: 126 NPLLTYLNCA----------------RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQ 169

Query: 257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNN 316
             L TL+ S N +      ++   + L  L+   N ++  +  +    I +  L+ S N 
Sbjct: 170 TQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNK 223

Query: 317 LS 318
           L+
Sbjct: 224 LT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 45/245 (18%), Positives = 93/245 (37%), Gaps = 35/245 (14%)

Query: 74  SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
           S   L  L +L   N++++ ++  +   +  L  L  ++N+++ ++   +     L +L 
Sbjct: 37  SEEQLATLTSLDCHNSSIT-DMTGIEKLTG-LTKLICTSNNIT-TLD--LSQNTNLTYLA 91

Query: 134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFI 193
             +N L+    L +   T +  L+   N L+      +  S   LL  L+ + N L+   
Sbjct: 92  CDSNKLTN---LDVTPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCARNTLTEID 143

Query: 194 PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
                 L+++                  K   +   T    +  LD S   ++     ++
Sbjct: 144 VSHNTQLTELDCHL-------------NKKITKLDVTPQTQLTTLDCSFNKITEL---DV 187

Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313
           +    L  LN   N++      ++     L  LD S NKL+  I  +   L  + + + S
Sbjct: 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCS 241

Query: 314 YNNLS 318
            N L+
Sbjct: 242 VNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 46/279 (16%), Positives = 92/279 (32%), Gaps = 27/279 (9%)

Query: 72  PKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRF 131
              +    QL TL  S N ++    L  S +  L  L+   N+++  +   +     L F
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 132 LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-LHILDLSHNDLS 190
           L   +N L+    + +   T +   D   N L+  +     + +  L     DL   DL+
Sbjct: 217 LDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLT 272

Query: 191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL-----LDLSSTNL 245
                        +      V H  +L ++   +     T L L        L L++T L
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA--AGITELDLSQNPKLVYLYLNNTEL 330

Query: 246 SAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI 305
           + E+   ++    L +L+  + H+       +G    L     ++ +       ++ +  
Sbjct: 331 T-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNS 385

Query: 306 FMNHLNLSYNNLSGEI----PNTNQFQTLNDPSIYEGNL 340
               ++    +  G      P           +I   NL
Sbjct: 386 LTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 57/252 (22%)

Query: 74  SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
            +  L +L  L    N L+    L  S +  L  L+ + N+L+  I   +     L  L 
Sbjct: 101 DVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELD 154

Query: 134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFI 193
              N    +L ++    T + +LD   N ++      +  S   LL+ L+   N+++   
Sbjct: 155 CHLNKKITKLDVT--PQTQLTTLDCSFNKITE-----LDVSQNKLLNRLNCDTNNITKLD 207

Query: 194 PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
                                                    +  LD SS  L+     ++
Sbjct: 208 -----------------------------------LNQNIQLTFLDCSSNKLTE---IDV 229

Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313
           T L  L   + S N L  ++   +     L TL   +  L   I  +      + +    
Sbjct: 230 TPLTQLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EIDLT--HNTQLIYFQAE 283

Query: 314 YNNLSGEIPNTN 325
                 E+  T+
Sbjct: 284 GCRKIKELDVTH 295

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 40/265 (15%), Positives = 77/265 (29%), Gaps = 54/265 (20%)

Query: 74  SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
            +     L  L   +N L+    L  +  + L  L+   N L+      +     L +L 
Sbjct: 80  DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLN 133

Query: 134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFI 193
              N L+    + + + T +  LD   N     +      +    L  LD S N ++   
Sbjct: 134 CARNTLT---EIDVSHNTQLTELDCHLNKKITKLDV----TPQTQLTTLDCSFNKITELD 186

Query: 194 PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
             +   L+ +             +  +              +  LD SS  L+     ++
Sbjct: 187 VSQNKLLNRLNC-------DTNNITKLD-------LNQNIQLTFLDCSSNKLTE---IDV 229

Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM------------ 301
           T L  L   + S N L  ++   +     L TL   +  L   I  +             
Sbjct: 230 TPLTQLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGC 285

Query: 302 --------ASLIFMNHLNLSYNNLS 318
                        +  L+     ++
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 12/194 (6%)

Query: 74  SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
            + +  QLI           E+ +  ++++ LY+LD     ++  +   +     L +L 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLY 324

Query: 134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFI 193
           L N  L+ EL +S  + T ++SL   + ++  +  +         L+    +        
Sbjct: 325 LNNTELT-ELDVS--HNTKLKSLSCVNAHIQ-DFSSVGKIP---ALNNNFEAEGQTITMP 377

Query: 194 PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
              + N S      P  +   G    +  G    Y      +   +LS+ N +       
Sbjct: 378 KETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTS 437

Query: 254 TSLVHLGTLNLSHN 267
            +   +GT+     
Sbjct: 438 ENGAIVGTVTTPFE 451

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 54/264 (20%)

Query: 74  SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
            +  L QL     S N L+ E+    S  S L  L      L   I   +     L +  
Sbjct: 228 DVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQ 281

Query: 134 LRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFI 193
                   EL ++  + T +  LD     ++  +      S    L  L L++ +L+   
Sbjct: 282 AEGCRKIKELDVT--HNTQLYLLDCQAAGIT-ELD----LSQNPKLVYLYLNNTELTEL- 333

Query: 194 PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL 253
              V + + +K                                 L   + ++  +    +
Sbjct: 334 --DVSHNTKLKS--------------------------------LSCVNAHIQ-DFS-SV 357

Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG---SIPPSMASLIFMNHL 310
             +  L     +    +    E + N      +        G   +I P    +      
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 311 NLSYNNLSGEIPN-TNQFQTLNDP 333
            +++ NLS + P  T  F + N  
Sbjct: 418 TITWENLSTDNPAVTYTFTSENGA 441

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 49/309 (15%), Positives = 95/309 (30%), Gaps = 35/309 (11%)

Query: 23  FWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82
            +   LT+         +    P S+ +  P   +  S+ +   LP              
Sbjct: 260 CFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319

Query: 83  TLVISNNNLSGEI---------PLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV 133
            +   +++    +             +    L+  ++S    +  +   + S + L+ L 
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELE 378

Query: 134 LRNNYLSGELPLSLKNCTFMESLDLG---DNNLSGNIPAWIGASMPGLLHILDLSHNDLS 190
             N +    + L ++    +          + L    P             L  +     
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438

Query: 191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP 250
            +   RV +L+   +     ++                   L LV  LDLS   L   +P
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQ------------------LLLVTHLDLSHNRLR-ALP 479

Query: 251 AELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG-SIPPSMASLIFMNH 309
             L +L  L  L  S N L  +  + + N   L+ L L  N+L   +    + S   +  
Sbjct: 480 PALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 310 LNLSYNNLS 318
           LNL  N+L 
Sbjct: 538 LNLQGNSLC 546

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 5/122 (4%)

Query: 73  KSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL 132
             I     +  L I+N + +   P+  S  S L  L +    ++     ++  L +L  L
Sbjct: 60  TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF 192
            + ++     +   +     + S+DL  N    +I      ++P L   L++  + +  +
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPEL-KSLNIQFDGVHDY 174

Query: 193 IP 194
             
Sbjct: 175 RG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 234 LVNL--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN 291
           L NL  L +   +++++    L+ L  L  L++SH+     I  +I     + ++DLS N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 292 KLSGSIPPSMASLIFMNHLNLSYNNLS 318
                I P + +L  +  LN+ ++ + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 48/221 (21%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
             K  +  ++  ++ +    +  +  + L  + ++N +++  +   I     ++ L + N
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLSHNDLSGFIP 194
            + +   P+S    + +E L +   +++ +    +     GL  L +LD+SH+     I 
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLS----GLTSLTLLDISHSAHDDSIL 129

Query: 195 PRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT 254
            ++  L  +                                  +DLS      +I   L 
Sbjct: 130 TKINTLPKVNS--------------------------------IDLSYNGAITDIMP-LK 156

Query: 255 SLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
           +L  L +LN+  + +       I +F  L  L      + G
Sbjct: 157 TLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 233 YLVNL--LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK 290
           Y  N+  L +++ + +   P  ++ L +L  L +    +       +     L  LD+S 
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 291 NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323
           +    SI   + +L  +N ++LSYN    +I  
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 9e-09
 Identities = 52/203 (25%), Positives = 74/203 (36%), Gaps = 46/203 (22%)

Query: 151 TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS 210
           ++   LDL  NNLS     W    +  L H L LSHN L+ FI                 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNL-HSLLLSHNHLN-FISSEA------------- 83

Query: 211 VQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE-LTSLVHLGTLNLSHNHL 269
                             F  +  +  LDLSS +L   +     + L  L  L L +NH+
Sbjct: 84  ------------------FVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHI 124

Query: 270 VGKIPEEI-GNFEWLETLDLSKNKLSGSIPP----SMASLIFMNHLNLSYNNLSGEIPNT 324
           V  +      +   L+ L LS+N++S   P         L  +  L+LS N L       
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 325 NQFQTLNDPSIYEGNLALCGDPL 347
              Q L  P+  +  L L  +PL
Sbjct: 183 --LQKL--PAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI-GSLRTLRFLVLR 135
            L  L +L++S+N+L+      F     L  LD+S+N L  ++ E +   L+ L  L+L 
Sbjct: 62  RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 136 NNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLSHNDLSGFI 193
           NN++      + ++   ++ L L  N +S   P  +      L  L +LDLS N L    
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 194 PPRVGNLSDMKVE 206
              +  L      
Sbjct: 180 LTDLQKLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 39/191 (20%), Positives = 65/191 (34%), Gaps = 36/191 (18%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
           +    L L+   +S    +W       L  L +++N L                 +SS  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---------------FISSEA 83

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
           F              +  L  L +S+N+L      LFS+   L +L + NN +   +  +
Sbjct: 84  FVP------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRN 130

Query: 123 I-GSLRTLRFLVLRNNYLSGELP----LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPG 177
               +  L+ L L  N +S   P            +  LDL  N L   +P      +P 
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPA 188

Query: 178 L-LHILDLSHN 187
              + L L +N
Sbjct: 189 WVKNGLYLHNN 199

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 50/254 (19%), Positives = 93/254 (36%), Gaps = 60/254 (23%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
            L   I +    +N++  +    ++   +  L      ++ +I E +  L  L  L L++
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-----LHILDLSHNDLSG 191
           N ++   PL   N T +  L+L  N L          ++  +     +  LDL+   ++ 
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK---------NVSAIAGLQSIKTLDLTSTQITD 121

Query: 192 FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPA 251
             P  +  LS+++V                                L L    ++  I  
Sbjct: 122 VTP--LAGLSNLQV--------------------------------LYLDLNQIT-NISP 146

Query: 252 ELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN 311
            L  L +L  L++ +  +       + N   L TL    NK+S  I P +ASL  +  ++
Sbjct: 147 -LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVH 201

Query: 312 LSYNNLSGEIPNTN 325
           L  N +S   P  N
Sbjct: 202 LKNNQISDVSPLAN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 43/264 (16%), Positives = 91/264 (34%), Gaps = 48/264 (18%)

Query: 73  KSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL 132
           + +  L  LI L + +N ++   PL   N + +  L++S N L      +I  L++++ L
Sbjct: 57  EGVQYLNNLIGLELKDNQITDLAPL--KNLTKITELELSGNPLK--NVSAIAGLQSIKTL 112

Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF 192
            L +  ++   PL+    + ++ L L  N ++ NI     A +  L   L + +  +S  
Sbjct: 113 DLTSTQITDVTPLA--GLSNLQVLYLDLNQIT-NISPL--AGLTNL-QYLSIGNAQVSDL 166

Query: 193 IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE 252
            P                                     L  +  L      +S +I   
Sbjct: 167 TP----------------------------------LANLSKLTTLKADDNKIS-DISP- 190

Query: 253 LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNL 312
           L SL +L  ++L +N +       + N   L  + L+   ++        +L+  N +  
Sbjct: 191 LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

Query: 313 SYNNLSGEIPNTNQFQTLNDPSIY 336
                      ++     +    +
Sbjct: 249 PSGAPIAPATISDNGTYASPNLTW 272

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 47/327 (14%), Positives = 104/327 (31%), Gaps = 73/327 (22%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
                +   K+ ++DT+      L   +  L      +   +      N    ++L  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
                       + NL ++  L +S N L     +  +    +  LD+++  ++   P  
Sbjct: 75  ITD------LAPLKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITDVTP-- 124

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL---- 178
           +  L  L+ L L  N ++  +   L   T ++ L +G+  +S          +  L    
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS---------DLTPLANLS 173

Query: 179 -LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
            L  L    N +S   P  + +L ++                                  
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIE-------------------------------- 199

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           + L +  +S   P  L +  +L  + L++  +  +      N   L   ++ K      I
Sbjct: 200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNN---LVVPNVVKGPSGAPI 254

Query: 298 PPSMASLIFMNHLNLSYNNLSGEIPNT 324
            P+       ++   +  NL+  + + 
Sbjct: 255 APA----TISDNGTYASPNLTWNLTSF 277

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 44/250 (17%), Positives = 90/250 (36%), Gaps = 44/250 (17%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
              + I   +   +++  +    +  + +  +  +N+ +  S+ + I  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-----LHILDLSHNDLSG 191
           N L+   PL+  N   +  L L +N +           +  L     L  L L HN +S 
Sbjct: 78  NKLTDIKPLA--NLKNLGWLFLDENKVK---------DLSSLKDLKKLKSLSLEHNGIS- 125

Query: 192 FIPPRVGNLSDMKVEPPKSVQHEGRLRVV----TKGSERKYFTTLYLVNLLDLSSTNLSA 247
                +  L  +            +L  +     K ++    + L  ++ L L    +S 
Sbjct: 126 ----DINGLVHLP-----------QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170

Query: 248 EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM 307
            +P  L  L  L  L LS NH+       +   + L+ L+L   +         ++L+  
Sbjct: 171 IVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 308 NHLNLSYNNL 317
           N +  +  +L
Sbjct: 227 NTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 48/252 (19%), Positives = 84/252 (33%), Gaps = 56/252 (22%)

Query: 75  IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVL 134
           I  L  +  L ++ N L+   PL  +N   L  L +  N +   +  S+  L+ L+ L L
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSL 119

Query: 135 RNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL-----LHILDLSHNDL 189
            +N +S ++   L +   +ESL LG+N ++          +  L     L  L L  N +
Sbjct: 120 EHNGIS-DIN-GLVHLPQLESLYLGNNKIT---------DITVLSRLTKLDTLSLEDNQI 168

Query: 190 SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI 249
           S  +P                                     L  +  L LS  ++S ++
Sbjct: 169 SDIVP----------------------------------LAGLTKLQNLYLSKNHIS-DL 193

Query: 250 PAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH 309
              L  L +L  L L     + K      N     T+  +   L      S        +
Sbjct: 194 R-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

Query: 310 LNLSYNNLSGEI 321
           +       + E+
Sbjct: 253 VKWHLPEFTNEV 264

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 42/211 (19%)

Query: 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
           IL +S N L      ++     L  L L    L+ +L +       + +LDL  N L  +
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-S 91

Query: 167 IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226
           +P  +G ++P L  +LD+S N L+  +P                                
Sbjct: 92  LPL-LGQTLPAL-TVLDVSFNRLT-SLPLGA----------------------------- 119

Query: 227 KYFTTLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLE 284
                L  +  L L    L   +P  L T    L  L+L++N+L  ++P  +    E L+
Sbjct: 120 --LRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

Query: 285 TLDLSKNKLSGSIPPSMASLIFMNHLNLSYN 315
           TL L +N L  +IP        +    L  N
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           L LS   L     A L     L  LNL    L     +  G    L TLDLS N+L  S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SL 92

Query: 298 PPSMASLIFMNHLNLSYNNLS 318
           P    +L  +  L++S+N L+
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE-IGNFEWLETLDLSKNKLSGSIPPSMA 302
           + + +    L    +L  L + +   +  +    +     L  L + K+ L   + P   
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAF 76

Query: 303 S-LIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIY-EGNLALC 343
                ++ LNLS+N L      T   Q L+   +   GN   C
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKT--VQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 71  IPKSIGNLKQLITLVISNNNLSGEIPL-LFSNSSFLYILDMSNNSLSGSIPESIGSLRTL 129
               +   + L  L I N      + L        L  L +  + L    P++      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163
             L L  N L   L         ++ L L  N L
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 83  TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSG 141
           + +    + + +       +  L  L + N      +    +  L  LR L +  + L  
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 142 ELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL 189
             P +      +  L+L  N L  ++           L  L LS N L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSW--KTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 112 NNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPL-SLKNCTFMESLDLGDNNLSGNIPAW 170
               +      +     L  L + N      L L  L+    + +L +  + L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 171 IGASMPGLLHILDLSHNDLSGFIPPRVGNLS 201
                P L   L+LS N L       V  LS
Sbjct: 75  AFHFTPRLSR-LNLSFNALESLSWKTVQGLS 104

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 40/247 (16%), Positives = 78/247 (31%), Gaps = 57/247 (23%)

Query: 75  IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVL 134
              L   +   +   +++  +       S +   +  N+++  S+   +     L+ L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 135 RNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL----LHILDLSHNDLS 190
            +N +S +L   LK+ T +E L +  N L          ++ G+    L  L L +N+L 
Sbjct: 71  SHNQIS-DLS-PLKDLTKLEELSVNRNRLK---------NLNGIPSACLSRLFLDNNELR 119

Query: 191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP 250
                   +L  +K            L +                  L + +  L   I 
Sbjct: 120 -----DTDSLIHLK-----------NLEI------------------LSIRNNKLK-SIV 144

Query: 251 AELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL 310
             L  L  L  L+L  N +       +   + +  +DL+  K           L   N +
Sbjct: 145 M-LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 311 NLSYNNL 317
                  
Sbjct: 202 KDPDGRW 208

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
           N  +   L +    +   I  L +       +D S+N +   + +    LR L+ L++ N
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLS 164
           N +        +    +  L L +N+L 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 234 LVNLLDLS-STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK 292
            V   +L         I     +L     ++ S N +  K+ +       L+TL ++ N+
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNR 75

Query: 293 LSGSIPPSMASLIFMNHLNLSYNNLS 318
           +         +L  +  L L+ N+L 
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLV 101

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 47/236 (19%)

Query: 88  NNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL 147
           N  L  +   + S ++    +D S+  L+ +IP +I +    + L L++N LS     + 
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIPA--DTKKLDLQSNKLSSLPSKAF 57

Query: 148 KNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP 207
              T +  L L DN L   +PA I   +   L  L ++ N L   +P  V          
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKN-LETLWVTDNKLQA-LPIGV---------- 104

Query: 208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSH 266
                                F  L  +  L L    L + +P  +  SL  L  L+L +
Sbjct: 105 ---------------------FDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGY 142

Query: 267 NHLVGKIPEEIGNFE---WLETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYNNLS 318
           N L   +P+  G F+    L+ L L  N+L   +P      L  +  L L  N L 
Sbjct: 143 NELQ-SLPK--GVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 56/213 (26%), Positives = 80/213 (37%), Gaps = 42/213 (19%)

Query: 107 ILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL-KNCTFMESLDLGDNNLSG 165
            LD+ +N LS    ++   L  LR L L +N L   LP  + K    +E+L + DN L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 166 NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSE 225
            +P  +       L  L L  N L   +PPRV                            
Sbjct: 99  ALPIGVFDQ-LVNLAELRLDRNQLK-SLPPRV---------------------------- 128

Query: 226 RKYFTTLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEI-GNFEWL 283
              F +L  +  L L    L + +P  +   L  L  L L +N L  ++PE        L
Sbjct: 129 ---FDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTEL 183

Query: 284 ETLDLSKNKLSGSIPPSM-ASLIFMNHLNLSYN 315
           +TL L  N+L   +P     SL  +  L L  N
Sbjct: 184 KTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 57/244 (23%), Positives = 89/244 (36%), Gaps = 47/244 (19%)

Query: 51  NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM 110
           N   +VD SS      +P  IP     L       + +N LS      F   + L +L +
Sbjct: 16  NNKNSVDCSSKKLT-AIPSNIPADTKKLD------LQSNKLSSLPSKAFHRLTKLRLLYL 68

Query: 111 SNNSLSGSIPESI-GSLRTLRFLVLRNNYLSGELPLSL-KNCTFMESLDLGDNNLSGNIP 168
           ++N L  ++P  I   L+ L  L + +N L   LP+ +      +  L L  N L  ++P
Sbjct: 69  NDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLP 125

Query: 169 AWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKY 228
             +  S+  L + L L +N+L   +P  V                               
Sbjct: 126 PRVFDSLTKLTY-LSLGYNELQ-SLPKGV------------------------------- 152

Query: 229 FTTLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD 287
           F  L  +  L L +  L   +P      L  L TL L +N L         + E L+ L 
Sbjct: 153 FDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 288 LSKN 291
           L +N
Sbjct: 212 LQEN 215

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 77  NLKQLITLVISNNNLS-GEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLR 135
               +  LV+ N   + G+I  L +    L  L + N  L  S+  ++  L  L+ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 136 NNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187
            N + G L +  +    +  L+L  N L           +   L  LDL + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC-LKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE---WLETLDLSKNKLS 294
           LD   +N   +I       V+L  L+L +  L       + N      L+ L+LS+N++ 
Sbjct: 31  LDNCKSNDG-KIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKKLELSENRIF 84

Query: 295 GSIPPSMASLIFMNHLNLSYNNLS 318
           G +      L  + HLNLS N L 
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 75  IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG-SIPESIGSLRTLRFLV 133
           +  L +L  L +S N + G + +L      L  L++S N L   S  E +  L  L+ L 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 134 LRNN 137
           L N 
Sbjct: 127 LFNC 130

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 41/275 (14%), Positives = 83/275 (30%), Gaps = 56/275 (20%)

Query: 81  LITLVISNNNLSGE-----IPLLFSNSSFLYILDMSNNSLSG----SIPESIGSLRTLRF 131
           +    +  + ++ E       +L  + S +  + +S N++       + E+I S + L  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 132 LVLRNNYLS----------GELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--L 179
               + +              L  +L  C  + ++ L DN         +   +     L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 180 HILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGR-LRVVTKGSERKYFTTLYLVNLL 238
             L L +N L                  P++     R L+ +    + K    L     +
Sbjct: 125 EHLYLHNNGLG-----------------PQAGAKIARALQELAVNKKAKNAPPL---RSI 164

Query: 239 DLSSTNLSAE----IPAELTSLVHLGTLNLSHNHL-----VGKIPEEIGNFEWLETLDLS 289
                 L             S   L T+ +  N +        + E +   + L+ LDL 
Sbjct: 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 290 KNKLSGSIPPSMASLIFMN----HLNLSYNNLSGE 320
            N  +     ++A  +        L L+   LS  
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 26/162 (16%)

Query: 55  TVDLSSNNF---------EGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPLLFSN 101
            + L +N                L + K   N   L +++   N L           F +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 102 SSFLYILDMSNNSL-----SGSIPESIGSLRTLRFLVLRNNYLSGE----LPLSLKNCTF 152
              L+ + M  N +        + E +   + L+ L L++N  +      L ++LK+   
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 153 MESLDLGDNNLSGNIPAWIGASMPGL----LHILDLSHNDLS 190
           +  L L D  LS    A +  +   L    L  L L +N++ 
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 41/311 (13%), Positives = 81/311 (26%), Gaps = 72/311 (23%)

Query: 54  ATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILD 109
               L  +         +   +     +  +V+S N +  E    +    ++   L I +
Sbjct: 7   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66

Query: 110 MSNNSLS----------GSIPESIGSLRTLRFLVLRNNYLSGE----LPLSLKNCTFMES 155
            S+                + +++     L  + L +N         L   L   T +E 
Sbjct: 67  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 156 LDLGDNNLS-----------GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK 204
           L L +N L              +     A     L  +    N L       +   +   
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE---NGSMKEWAKT- 182

Query: 205 VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE-----IPAELTSLVHL 259
            +  + +                          + +    +  E     +   L     L
Sbjct: 183 FQSHRLLHT------------------------VKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 260 GTLNLSHNHL----VGKIPEEIGNFEWLETLDLSKNKLS--GSIPPSMASLIFMN----H 309
             L+L  N         +   + ++  L  L L+   LS  G+     A     N     
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 310 LNLSYNNLSGE 320
           L L YN +  +
Sbjct: 279 LRLQYNEIELD 289

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 53/297 (17%), Positives = 100/297 (33%), Gaps = 59/297 (19%)

Query: 55  TVDLSSNNFEGRLPLCIPKSI-GNLKQLITLVISNNNLSGE-----IPLLFSNSSFLYIL 108
           +++LS N+   +    + + +      + +L +S N LS +     +  L +    + +L
Sbjct: 55  SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL 114

Query: 109 DMSNNSLSGSIPESIGSL-----RTLRFLVLRNNYLSGE------LPLSLKNCTFMESLD 157
           D+  N  S                ++  L LR N L  +        L+      + SL+
Sbjct: 115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN-VNSLN 173

Query: 158 LGDNNLSGNIPAWIG---ASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHE 214
           L  NNL+    A +    AS+P  +  LDLS N L          L+ +    P  V   
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG---LKSYAELAYIFSSIPNHVVS- 229

Query: 215 GRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHL- 269
                                  L+L    L       +     SL HL T+ L ++ + 
Sbjct: 230 -----------------------LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

Query: 270 ------VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE 320
                    +     N + +  +D +  ++  S    +++LI          +L  +
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 53/266 (19%), Positives = 87/266 (32%), Gaps = 60/266 (22%)

Query: 88  NNNLSGE-----IPLLFSNSSFLYILDMSNNSLSGSIPESIGSL-----RTLRFLVLRNN 137
           N  L+       +    S    +  LD+S N+L       +         ++  L L  N
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 138 YLSGE----LPLSLK-NCTFMESLDLGDNNLSGNIPAWIG---ASMPGLLHILDLSHNDL 189
            L  +    L   L      + SL+L  N LS      +    A++P  + +LDL  ND 
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 190 SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI 249
           S                 P S+                          L+L   +L  + 
Sbjct: 122 S---SKSSSEFKQAFSNLPASITS------------------------LNLRGNDLGIKS 154

Query: 250 PAELTSL-----VHLGTLNLSHNHL----VGKIPEEIGNF-EWLETLDLSKNKLSGSIPP 299
             EL  +      ++ +LNL  N+L      ++ + + +    + +LDLS N L      
Sbjct: 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA 214

Query: 300 SMASLIFMN-----HLNLSYNNLSGE 320
            +A +          LNL  N L G 
Sbjct: 215 ELAYIFSSIPNHVVSLNLCLNCLHGP 240

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 26/217 (11%)

Query: 102 SSFLYILDMSNNSLSGSIPESIGS-LRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160
             F   +D     +S      +   L  +  L       +  L +  K    ++SL++  
Sbjct: 143 GLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIIS 202

Query: 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVV 220
             L  ++   I  S    L  L L                        +    +G + V 
Sbjct: 203 GGLPDSVVEDILGSDLPNLEKLVLYVGV--------------------EDYGFDGDMNVF 242

Query: 221 TKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL----VGKIPEE 276
                +  F  L  + ++D    N+  E+  E   L  L T+++S   L       + + 
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 277 IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313
           +   + L+ +++  N LS  +   +   + M  +++S
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 37/209 (17%), Positives = 69/209 (33%), Gaps = 26/209 (12%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRG---RVPNSLGFNFPATVDLS 59
                L        +    W  Q+ L+   +  A   L     +  N+L        +L 
Sbjct: 139 AHFEGLFWGDIDFEEQEISWIEQVDLS--PVLDAMPLLNNLKIKGTNNLSIGKKPRPNLK 196

Query: 60  SNNFE-GRLPLCIPKSIG-----NLKQLITLVISNNNLSGEIPL-----LFSNSSF--LY 106
           S     G LP  + + I      NL++L  L +   +   +  +     LFS   F  L 
Sbjct: 197 SLEIISGGLPDSVVEDILGSDLPNLEKL-VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255

Query: 107 ILDMSNNSLSGSIPESIGS---LRTLRFLVLRNNYLSGE----LPLSLKNCTFMESLDLG 159
            L + +      + E       L  L  + +    L+ E    L   +     ++ +++ 
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315

Query: 160 DNNLSGNIPAWIGASMPGLLHILDLSHND 188
            N LS  +   +  S+P  + + D    D
Sbjct: 316 YNYLSDEMKKELQKSLPMKIDVSDSQEYD 344

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           LD S +N   ++         L  L+  +  L   I   +     L+ L+LS N++SG +
Sbjct: 24  LDNSRSNEG-KLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGL 80

Query: 298 PPSMASLIFMNHLNLSYNNLS 318
                    + HLNLS N + 
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 77  NLKQLITLVISNN-NLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLR 135
               +  LV+ N+ +  G++  L      L  L   N  L+ SI  ++  L  L+ L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 136 NNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187
           +N +SG L +  + C  +  L+L  N +           +   L  LDL + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN-LKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 75  IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG-SIPESIGSLRTLRFLV 133
           +  L +L  L +S+N +SG + +L      L  L++S N +   S  E +  L  L+ L 
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 134 LRNN 137
           L N 
Sbjct: 120 LFNC 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 9/135 (6%)

Query: 51  NFPATV---DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107
           + P       L++N F       I K    L QL  +  SNN ++      F  +S +  
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFK---KLPQLRKINFSNNKITDIEEGAFEGASGVNE 85

Query: 108 LDMSNNSLSGSIPESI-GSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN 166
           + +++N L  ++   +   L +L+ L+LR+N ++     S    + +  L L DN ++  
Sbjct: 86  ILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-T 143

Query: 167 IPAWIGASMPGLLHI 181
           +      ++  L  +
Sbjct: 144 VAPGAFDTLHSLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 25/113 (22%)

Query: 238 LDLSSTNLSA-EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEW---LETLDLSKNKL 293
           L L++   +  E       L  L  +N S+N +   I E  G FE    +  + L+ N+L
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSNRL 93

Query: 294 SGSIPPSM-ASLIFMNHLNLSYNNLSGEIP---------------NTNQFQTL 330
             ++   M   L  +  L L  N ++  +                  NQ  T+
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 229 FTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLD 287
           F  L  +  ++ S+  ++            +  + L+ N L   +  ++    E L+TL 
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLM 111

Query: 288 LSKNKLSGSIPPSM-ASLIFMNHLNLSYNNLS 318
           L  N+++  +       L  +  L+L  N ++
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE---WLETLDLSKNKLS 294
           + L    +    P   +    L  ++LS+N +  ++      F+    L +L L  NK++
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKIT 93

Query: 295 GSIPPSM-ASLIFMNHLNLSYNNLS 318
             +P S+   L  +  L L+ N ++
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 83  TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESI-GSLRTLRFLVLRNNYLSG 141
            + +  N +    P  FS    L  +D+SNN +S  +       LR+L  LVL  N ++ 
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 142 ELPLSL-KNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS 190
           ELP SL +    ++ L L  N ++  +       +   L++L L  N L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHN-LNLLSLYDNKLQ 141

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            + LS+NN E      I  S+  ++ L  L +  N +  +I  L + +  L  L +S N 
Sbjct: 52  HLALSTNNIE-----KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ 104

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLS-LKNCTFMESLDLGDN 161
           ++ S+   I  L  LR L + NN ++    +  L     +E L L  N
Sbjct: 105 IA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.01

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.8e-42  Score=333.94  Aligned_cols=346  Identities=37%  Similarity=0.580  Sum_probs=263.5

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-C--CCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-G--FNFPATVDLSSNNFEGRLPLCIPKSIGNL   78 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~l   78 (356)
                      +++|++|++++|.+++.+|..+..+.++|++|++++|.+.+..+..+ .  +++|++|++++|.+++.    +|..+..+
T Consensus       342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l  417 (768)
T 3rgz_A          342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNC  417 (768)
T ss_dssp             CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGC
T ss_pred             CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc----cCHHHhcC
Confidence            45667777777776666666666652267777777666665444444 2  56677777777776653    34566777


Q ss_pred             ccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEe
Q 041463           79 KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL  158 (356)
Q Consensus        79 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  158 (356)
                      ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            78888888888777777777777777888888877777677777777777777777777777777777777777777777


Q ss_pred             cCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeee-------------------
Q 041463          159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV-------------------  219 (356)
Q Consensus       159 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~-------------------  219 (356)
                      ++|.+.+..|.++.. ++. |+.|++++|.+.+.+|..+..+++|+.+........+.++.                   
T Consensus       498 ~~N~l~~~~p~~~~~-l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGR-LEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             CSSCCCSCCCGGGGG-CTT-CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             cCCccCCcCChHHhc-CCC-CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            777777667766654 333 77777777777777777777777766644433222211110                   


Q ss_pred             -------------------------------------------eecCCccccccccccccEEeecCCcccccCchhhhcc
Q 041463          220 -------------------------------------------VTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSL  256 (356)
Q Consensus       220 -------------------------------------------~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~  256 (356)
                                                                 ...+..+..+..+++|+.|++++|.+.+..|..+..+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                                                       0011122345667899999999999999999999999


Q ss_pred             cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcccc
Q 041463          257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIY  336 (356)
Q Consensus       257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~  336 (356)
                      +.|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..++.++.|++|++++|+++|.+|....++.+.... |
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~-~  734 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK-F  734 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG-G
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999888887 8


Q ss_pred             ccCccccCCCCCCCCCCCC
Q 041463          337 EGNLALCGDPLPKKCPENG  355 (356)
Q Consensus       337 ~~~~~~~~~~~~~~c~~~~  355 (356)
                      .+|+.+||.|.. .|+..+
T Consensus       735 ~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          735 LNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CSCTEEESTTSC-CCCSCC
T ss_pred             cCCchhcCCCCc-CCCCCc
Confidence            999999999988 888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.8e-37  Score=281.56  Aligned_cols=338  Identities=21%  Similarity=0.223  Sum_probs=236.8

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcC-CCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRV-PNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      ++|++|++++|.+++..|..+..+ ++|++|++++|.+.+.+ +..+ ++++|++|++++|.+.+.    .|..+..+++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~  104 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL----ETGAFNGLAN  104 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE----CTTTTTTCTT
T ss_pred             CccCEEEecCCccCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc----ChhhccCccc
Confidence            468889999988887777777777 78999999888876443 4444 588899999998888753    3467788888


Q ss_pred             ccEEeccccccccccccc--ccCCCCCcEEEcccCccccccccc-ccCCCCCcEEEeeccccccccCccccCC--CCCcE
Q 041463           81 LITLVISNNNLSGEIPLL--FSNSSFLYILDMSNNSLSGSIPES-IGSLRTLRFLVLRNNYLSGELPLSLKNC--TFMES  155 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~l~~l--~~L~~  155 (356)
                      |++|++++|.+.+..+..  +..+++|++|++++|.+....|.. +..+++|++|++++|.+++..+..+..+  .+|+.
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            999999988887644443  788888999999988888666655 7788889999998888876666666554  45566


Q ss_pred             EEecCCcccccCCchhh-------cccccceeEEEcccCcccccCCCCcCCC---CCCcccCCC----------------
Q 041463          156 LDLGDNNLSGNIPAWIG-------ASMPGLLHILDLSHNDLSGFIPPRVGNL---SDMKVEPPK----------------  209 (356)
Q Consensus       156 L~l~~~~l~~~~~~~~~-------~~~~~~L~~L~l~~~~l~~~~~~~~~~l---~~L~~~~~~----------------  209 (356)
                      |++++|.+.+..+..+.       ...+ .++.|++++|.+.+..+..+...   .+++.+...                
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  263 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD  263 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTC-EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred             cccccCcccccchhhccccccccccccc-eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence            66666655432222111       0011 26666666665543222211110   111100000                


Q ss_pred             -------CC--ccCCCeeeee---cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCc
Q 041463          210 -------SV--QHEGRLRVVT---KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI  277 (356)
Q Consensus       210 -------~~--~~~~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  277 (356)
                             ..  .....+....   ....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus       264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  343 (455)
T 3v47_A          264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF  343 (455)
T ss_dssp             CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred             CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence                   00  0111111111   11234557788999999999999998888889899999999999999987778888


Q ss_pred             CCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463          278 GNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       278 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~  353 (356)
                      ..+++|++|++++|++++..|..|..+++|++|++++|++++.++.. ..++.|+.++       +.+|||.|+|+.
T Consensus       344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-------l~~N~l~~~~~~  413 (455)
T 3v47_A          344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW-------LHTNPWDCSCPR  413 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-------CCSSCBCCCTTT
T ss_pred             cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE-------ccCCCcccCCCc
Confidence            99999999999999999878888999999999999999999877765 6677777655       456788888873

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-36  Score=295.92  Aligned_cols=328  Identities=32%  Similarity=0.422  Sum_probs=194.5

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCC-----------
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPL-----------   69 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~-----------   69 (356)
                      +++|++|++++|.+++..|. +..+ ++|++|++++|.+++..+..+ .+++|++|++++|.+.+.+|.           
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L  276 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL  276 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTC-CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEEC
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccC-CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEEC
Confidence            45566666666665554444 4444 555555555555554444333 355555555555555433221           


Q ss_pred             -------CCCcccCC-cccccEEecccccccccccccccCCCCCcEEEcccCccccccccc-ccCCCCCcEEEeeccccc
Q 041463           70 -------CIPKSIGN-LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES-IGSLRTLRFLVLRNNYLS  140 (356)
Q Consensus        70 -------~~~~~~~~-l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~  140 (356)
                             .+|..+.. +++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|.. +..+++|++|++++|.++
T Consensus       277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred             cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence                   11223322 255555555555555555555555555555555555554333332 555555555555555555


Q ss_pred             cccCccccCCC-CCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeee
Q 041463          141 GELPLSLKNCT-FMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV  219 (356)
Q Consensus       141 ~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~  219 (356)
                      +..|..+..++ +|+.|++++|.+.+..+..+.......++.|++++|.+.+.+|..+..+++|+.+.......      
T Consensus       357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l------  430 (768)
T 3rgz_A          357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL------  430 (768)
T ss_dssp             ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE------
T ss_pred             ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc------
Confidence            55555555544 55555555555554444443332122366666666666656666666666665543333221      


Q ss_pred             eecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCc
Q 041463          220 VTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPP  299 (356)
Q Consensus       220 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~  299 (356)
                        .+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|.
T Consensus       431 --~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          431 --SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             --ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             --cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence              123345566777788888888877777777777777888888888887777777777778888888888888777777


Q ss_pred             cccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCc
Q 041463          300 SMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNL  340 (356)
Q Consensus       300 ~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~  340 (356)
                      .++.+++|++|++++|++++.+|.. ..++.|+.++ +.+|.
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~-Ls~N~  549 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD-LNTNL  549 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE-CCSSE
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE-CCCCc
Confidence            7777788888888888887776654 6677777776 44443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=278.09  Aligned_cols=322  Identities=22%  Similarity=0.215  Sum_probs=241.8

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL   84 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L   84 (356)
                      +.++.+++.++ .+|..+.   +++++|++++|.+++..+..+ ++++|++|++++|.+.+.    .|..|..+++|++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L   85 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV----EPGAFNNLFNLRTL   85 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe----ChhhhhCCccCCEE
Confidence            45666777776 4555443   578888888888887666655 588888888888877642    24667788888888


Q ss_pred             ecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463           85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus        85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      ++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            88888887555566778888888888888888777777888888888888888887666777888888888888888877


Q ss_pred             ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc
Q 041463          165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  244 (356)
                       ..+......++. |+.|++++|.+.+..+..+..+++|+.+...........        +.......+|+.|++++|.
T Consensus       166 -~~~~~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          166 -SIPTEALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--------TPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             -SCCHHHHTTCTT-CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE--------CTTTTTTCCCSEEEEESSC
T ss_pred             -ccChhHhcccCC-CcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc--------CcccccCccccEEECcCCc
Confidence             444433333443 888888888877666667777777766443332221111        1112223489999999999


Q ss_pred             ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC
Q 041463          245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT  324 (356)
Q Consensus       245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  324 (356)
                      +.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..|.++++|++|++++|++++..+..
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            98666678889999999999999998777778899999999999999999888889999999999999999999877655


Q ss_pred             -cccCcCCCccccccCccccCCCCCCCCC
Q 041463          325 -NQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       325 -~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                       ..++.|+.++       +.+|||.|||.
T Consensus       316 ~~~l~~L~~L~-------l~~N~l~c~c~  337 (477)
T 2id5_A          316 FHSVGNLETLI-------LDSNPLACDCR  337 (477)
T ss_dssp             BSCGGGCCEEE-------CCSSCEECSGG
T ss_pred             cCCCcccCEEE-------ccCCCccCccc
Confidence             5666676554       45688888886

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.8e-35  Score=278.39  Aligned_cols=195  Identities=19%  Similarity=0.157  Sum_probs=125.8

Q ss_pred             CCCCCcEEEecCCccccc--CCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC-----------
Q 041463          149 NCTFMESLDLGDNNLSGN--IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG-----------  215 (356)
Q Consensus       149 ~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~-----------  215 (356)
                      .+++|+.|++++|.+.+.  .+..+.. ++. ++.|++++|.+.+ ++..+..+++|+.+.........           
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~-L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLG-TNS-LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHC-CSC-CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhcc-CCc-ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            456777777777776533  2444332 333 8888888887763 44666667766664433221111           


Q ss_pred             Ceeeee------cCCccccccccccccEEeecCCcccc-cCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEc
Q 041463          216 RLRVVT------KGSERKYFTTLYLVNLLDLSSTNLSA-EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL  288 (356)
Q Consensus       216 ~~~~~~------~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L  288 (356)
                      .+....      ....+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            111110      11123345667777777777777765 35666777777888888888777666777777788888888


Q ss_pred             cCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccC-cCCCccccccCccccCCCCCCCCCC
Q 041463          289 SKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ-TLNDPSIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       289 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~c~~  353 (356)
                      ++|++++..|..+.++++|++|++++|+++..++.+..++ .|+.++       +.||||.|+|+.
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~-------l~~N~~~c~c~~  563 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN-------LTNNSVACICEH  563 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE-------CCSCCCCCSSTT
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE-------ccCCCcccCCcc
Confidence            8888876667777778888888888888776555555554 355443       567899999974

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-34  Score=276.79  Aligned_cols=343  Identities=23%  Similarity=0.236  Sum_probs=184.7

Q ss_pred             ccceEEEcccccccccCCchHHhhc-cCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCC-----------
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLS-LTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPL-----------   69 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~-----------   69 (356)
                      ++|++|++++|.+++..+..+..+. ++|++|++++|.+++..+..+ .+++|++|++++|.+.+..+.           
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL  301 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence            5566677777666665555555541 236666666666665555544 466666666666665543221           


Q ss_pred             --------------CCC----cccCCcccccEEecccccccccccccccCCCCCcEEEcccCccc--ccccccccC--CC
Q 041463           70 --------------CIP----KSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS--GSIPESIGS--LR  127 (356)
Q Consensus        70 --------------~~~----~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~--l~  127 (356)
                                    .+|    ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.  ......+..  .+
T Consensus       302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~  381 (680)
T 1ziw_A          302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS  381 (680)
T ss_dssp             ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred             eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence                          011    13445566666666666666555555666666666666665432  111112221  23


Q ss_pred             CCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccC
Q 041463          128 TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP  207 (356)
Q Consensus       128 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~  207 (356)
                      +|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+......++. ++.|++++|.+.+..+..+..+++|+.+.
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT-CCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc-ccEEecCCCCcceeChhhhhcCcccccch
Confidence            56666666666665566667777778888888777765555443343443 77777777777666666666666665543


Q ss_pred             CCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCC--------cCcCC
Q 041463          208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP--------EEIGN  279 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--------~~~~~  279 (356)
                      .......      ..+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+        ..+..
T Consensus       461 l~~n~l~------~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~  534 (680)
T 1ziw_A          461 LRRVALK------NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG  534 (680)
T ss_dssp             CTTSCCB------CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred             hcccccc------ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence            3322110      011123334455555555555555554444445555555555555555442111        12344


Q ss_pred             CCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcccccc-------------------C
Q 041463          280 FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEG-------------------N  339 (356)
Q Consensus       280 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~-------------------~  339 (356)
                      +++|++|++++|++++..+..|.++++|++|++++|++++.++.. ..++.|+.++ +.+                   .
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~~~~~L~~  613 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN-LQKNLITSVEKKVFGPAFRNLTE  613 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CTTSCCCBCCHHHHHHHHTTCSE
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE-CCCCcCCccChhHhcccccccCE
Confidence            455555555555555333334455555555555555555444433 3444444433 111                   1


Q ss_pred             ccccCCCCCCCCCC
Q 041463          340 LALCGDPLPKKCPE  353 (356)
Q Consensus       340 ~~~~~~~~~~~c~~  353 (356)
                      +.+.||||.|+|+.
T Consensus       614 l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          614 LDMRFNPFDCTCES  627 (680)
T ss_dssp             EECTTCCCCBCCCC
T ss_pred             EEccCCCcccCCcc
Confidence            23578999999984

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-35  Score=277.49  Aligned_cols=302  Identities=22%  Similarity=0.255  Sum_probs=193.3

Q ss_pred             CCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           29 TLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      +|++|++++|.+++..+..+ .+++|++|++++|.++     .+|..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH  329 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence            45566666666555444444 3556666666666554     23344555566666666666655444555556666666


Q ss_pred             EEcccCcccccc-cccccCCCCCcEEEeecccccccc--CccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463          108 LDMSNNSLSGSI-PESIGSLRTLRFLVLRNNYLSGEL--PLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL  184 (356)
Q Consensus       108 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l  184 (356)
                      |++++|.+.... +..+..+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+..+..+.. ++. ++.|++
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~-L~~L~l  407 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQ-LELLDL  407 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTT-CSEEEC
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-Ccc-CCeEEC
Confidence            666666554222 233555566666666666555333  445555566666666666555333333322 222 566666


Q ss_pred             ccCcccccCCC-CcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc---CchhhhcccccC
Q 041463          185 SHNDLSGFIPP-RVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE---IPAELTSLVHLG  260 (356)
Q Consensus       185 ~~~~l~~~~~~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~L~  260 (356)
                      ++|.+.+..+. .+..+++|+.+.......        ....+..+..+++|+.|++++|.+.+.   .+..+..+++|+
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--------DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCC--------BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCcc--------CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence            66655543332 245555554433332211        111233456677888899999998762   235688899999


Q ss_pred             eEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccC
Q 041463          261 TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGN  339 (356)
Q Consensus       261 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~  339 (356)
                      +|++++|.+++..|..+..+++|++|++++|++++..|..+.+++.| .|++++|++++.+|.. ..++.|+.++     
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~-----  553 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN-----  553 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE-----
T ss_pred             EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe-----
Confidence            99999999997778899999999999999999998889999999999 9999999999888875 6677776554     


Q ss_pred             ccccCCCCCCCCCC
Q 041463          340 LALCGDPLPKKCPE  353 (356)
Q Consensus       340 ~~~~~~~~~~~c~~  353 (356)
                        +.||||.|+|+.
T Consensus       554 --l~~N~~~c~c~~  565 (606)
T 3t6q_A          554 --LRQNPLDCTCSN  565 (606)
T ss_dssp             --CTTCCEECSGGG
T ss_pred             --CCCCCccccCCc
Confidence              567899999973

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.9e-35  Score=272.89  Aligned_cols=114  Identities=25%  Similarity=0.327  Sum_probs=74.1

Q ss_pred             ccccccccEEeecCCcccc-cCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCC
Q 041463          229 FTTLYLVNLLDLSSTNLSA-EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM  307 (356)
Q Consensus       229 ~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  307 (356)
                      +..+++|+.|++++|.+.+ .....+..+++|++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|
T Consensus       399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L  475 (562)
T 3a79_B          399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL  475 (562)
T ss_dssp             TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred             hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence            4455555556666655554 2222344555566666666655544333332  57888888888887 566555688899


Q ss_pred             CEEEcccCcccccCCC-CcccCcCCCccccccCccccCCCCCCCCC
Q 041463          308 NHLNLSYNNLSGEIPN-TNQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       308 ~~L~l~~n~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      ++|++++|++++.++. +..++.|+.++       +.||||.|+|+
T Consensus       476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~-------l~~N~~~c~c~  514 (562)
T 3a79_B          476 QELNVASNQLKSVPDGVFDRLTSLQYIW-------LHDNPWDCTCP  514 (562)
T ss_dssp             SEEECCSSCCCCCCTTSTTTCTTCCCEE-------CCSCCBCCCHH
T ss_pred             CEEECCCCCCCCCCHHHHhcCCCCCEEE-------ecCCCcCCCcc
Confidence            9999999999866665 56677666554       45689999985

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.7e-34  Score=257.11  Aligned_cols=311  Identities=18%  Similarity=0.166  Sum_probs=245.9

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      ++++++|+++++.++...+..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|.+.+.    .+..+..+++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL----PPHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTT
T ss_pred             cCCceEEEecCCchhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC----CHHHhcCCCC
Confidence            5789999999999985444444555 999999999999997777666 699999999999998753    2466888999


Q ss_pred             ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  160 (356)
                      |++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.++..   .+..+++|+.+++++
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY  195 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence            99999999999855555678999999999999999977788899999999999999999843   356788999999999


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      |.+.+..       .+..++.|++++|.+........   ++|+.+........          ....+..+++|+.|++
T Consensus       196 n~l~~~~-------~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~----------~~~~l~~l~~L~~L~L  255 (390)
T 3o6n_A          196 NLLSTLA-------IPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLT----------DTAWLLNYPGLVEVDL  255 (390)
T ss_dssp             SCCSEEE-------CCSSCSEEECCSSCCCEEECCCC---SSCCEEECCSSCCC----------CCGGGGGCTTCSEEEC
T ss_pred             ccccccC-------CCCcceEEECCCCeeeecccccc---ccccEEECCCCCCc----------ccHHHcCCCCccEEEC
Confidence            9876321       22348999999998875433222   34444333332211          1245778899999999


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE  320 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  320 (356)
                      ++|.+.+..+..+..+++|++|++++|.++ .++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             CSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence            999999888888999999999999999998 46667788999999999999998 5676788899999999999999876


Q ss_pred             CCCCcccCcCCCccccccCccccCCCCCCCC
Q 041463          321 IPNTNQFQTLNDPSIYEGNLALCGDPLPKKC  351 (356)
Q Consensus       321 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c  351 (356)
                      .  ...++.|+.++ +      .||||.|+|
T Consensus       334 ~--~~~~~~L~~L~-l------~~N~~~~~~  355 (390)
T 3o6n_A          334 K--LSTHHTLKNLT-L------SHNDWDCNS  355 (390)
T ss_dssp             C--CCTTCCCSEEE-C------CSSCEEHHH
T ss_pred             C--chhhccCCEEE-c------CCCCccchh
Confidence            3  56677777666 3      345555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=269.31  Aligned_cols=322  Identities=22%  Similarity=0.208  Sum_probs=182.9

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.++ .+    |..  .+++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l----p~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI----SCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE----ECC--CCCCC
T ss_pred             ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec----Ccc--ccCCc
Confidence            356777777777765555556655 677777777777766555554 4677777777777665 22    222  56677


Q ss_pred             cEEecccccccc-cccccccCCCCCcEEEcccCcccccccccccCCCCC--cEEEeecccc--ccccCccccCC------
Q 041463           82 ITLVISNNNLSG-EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL--RFLVLRNNYL--SGELPLSLKNC------  150 (356)
Q Consensus        82 ~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~l--~~~~~~~l~~l------  150 (356)
                      ++|++++|.+.+ ..|..|..+++|++|++++|.+..   ..+..+++|  ++|++++|.+  .+..|..+..+      
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~  169 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH  169 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred             cEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEE
Confidence            777777776664 245666667777777776666553   123333334  5555555444  22222222211      


Q ss_pred             -----------------------------------------------------------------------------CCC
Q 041463          151 -----------------------------------------------------------------------------TFM  153 (356)
Q Consensus       151 -----------------------------------------------------------------------------~~L  153 (356)
                                                                                                   ++|
T Consensus       170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L  249 (520)
T 2z7x_B          170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV  249 (520)
T ss_dssp             EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred             EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence                                                                                         123


Q ss_pred             cEEEecCCcccccCCchhh----------------------------------------------------cccccceeE
Q 041463          154 ESLDLGDNNLSGNIPAWIG----------------------------------------------------ASMPGLLHI  181 (356)
Q Consensus       154 ~~L~l~~~~l~~~~~~~~~----------------------------------------------------~~~~~~L~~  181 (356)
                      +.|++++|.+.+.+|..+.                                                    ..++ .++.
T Consensus       250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~-~L~~  328 (520)
T 2z7x_B          250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS-PFLH  328 (520)
T ss_dssp             SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC-CCCE
T ss_pred             cEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC-cccE
Confidence            3333333333222222210                                                    1111 2455


Q ss_pred             EEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCch-hhhcccccC
Q 041463          182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPA-ELTSLVHLG  260 (356)
Q Consensus       182 L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~L~  260 (356)
                      |++++|.+.+..|..+..+++|+.+.........      ....+..+..+++|+.|++++|.+.+..|. .+..+++|+
T Consensus       329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKE------LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB------HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             EEeECCccChhhhhhhccCCCCCEEEccCCccCc------cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            5555555544444444444444443332221110      000112345566677777777766653333 355566677


Q ss_pred             eEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC-CcccCcCCCccccccC
Q 041463          261 TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN-TNQFQTLNDPSIYEGN  339 (356)
Q Consensus       261 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~l~~~~~~~~~  339 (356)
                      +|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++..++. +..++.|+.++     
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~-----  474 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW-----  474 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-----
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE-----
Confidence            777777776655444443  67888888888888 6777667899999999999999866555 46666666554     


Q ss_pred             ccccCCCCCCCCC
Q 041463          340 LALCGDPLPKKCP  352 (356)
Q Consensus       340 ~~~~~~~~~~~c~  352 (356)
                        +.+|||.|+|+
T Consensus       475 --l~~N~~~c~c~  485 (520)
T 2z7x_B          475 --LHTNPWDCSCP  485 (520)
T ss_dssp             --CCSSCBCCCHH
T ss_pred             --CcCCCCcccCC
Confidence              46789999996

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.1e-34  Score=250.55  Aligned_cols=260  Identities=33%  Similarity=0.553  Sum_probs=228.8

Q ss_pred             CCCcEEecCCCcccC--cCCCCCCcccCCcccccEEeccc-ccccccccccccCCCCCcEEEcccCcccccccccccCCC
Q 041463           51 NFPATVDLSSNNFEG--RLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR  127 (356)
Q Consensus        51 ~~L~~L~l~~n~~~~--~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  127 (356)
                      .+++.|++++|.+.+  .+    |..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+....|..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~----~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI----PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC----CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCccc----ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            579999999998876  43    46788899999999995 888888899999999999999999999888888899999


Q ss_pred             CCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccC
Q 041463          128 TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP  207 (356)
Q Consensus       128 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~  207 (356)
                      +|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+.. +...++.|++++|.+.+..|..+..+       
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l-------  197 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANL-------  197 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGC-------
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCC-------
Confidence            9999999999999888999999999999999999998788877765 33249999999999876666554332       


Q ss_pred             CCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEE
Q 041463          208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD  287 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  287 (356)
                                               . |+.|++++|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|+
T Consensus       198 -------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~  250 (313)
T 1ogq_A          198 -------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD  250 (313)
T ss_dssp             -------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred             -------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence                                     2 67799999999988888999999999999999999855554 78899999999


Q ss_pred             ccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCccccCCCCCCCC
Q 041463          288 LSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKC  351 (356)
Q Consensus       288 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c  351 (356)
                      +++|++++..|..+..+++|++|++++|++++.+|....++.|+.++ +.+|+.+||.|.. .|
T Consensus       251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~-l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTTSS-CC
T ss_pred             CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH-hcCCCCccCCCCC-CC
Confidence            99999998899999999999999999999999999999999999999 8899999999876 45

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-34  Score=268.12  Aligned_cols=119  Identities=24%  Similarity=0.344  Sum_probs=94.5

Q ss_pred             cccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCc-CCCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463          228 YFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLV-GKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF  306 (356)
Q Consensus       228 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  306 (356)
                      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            4566777888888888877767777788888888888888876 357778888888888888888888777888888888


Q ss_pred             CCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463          307 MNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       307 L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~  353 (356)
                      |++|++++|++++.+|.. ..++.|+.++       +.+|||.|+|+.
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIW-------LHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEE-------CCSSCBCCCTTT
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEE-------ecCCcccCCCcc
Confidence            999999999888877764 6666666554       567899999975

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-34  Score=264.07  Aligned_cols=304  Identities=22%  Similarity=0.208  Sum_probs=253.5

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++++|++++|.+++..+..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+.. ++   +..|..+++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~---~~~~~~l~~L  106 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IP---LGVFTGLSNL  106 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CC---TTSSTTCTTC
T ss_pred             CCCcEEECCCCccceECHhHccCC-CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cC---cccccCCCCC
Confidence            468999999999998777888887 899999999999998777777 69999999999999873 22   2457889999


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      ++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            99999999998788888999999999999999999888889999999999999999998655566889999999999999


Q ss_pred             cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS  241 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  241 (356)
                      .+.+..+..+ ..++. |+.|++++|...+.++.......+|+.+.......        .......+..+++|+.|+++
T Consensus       187 ~i~~~~~~~~-~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~Ls  256 (477)
T 2id5_A          187 NINAIRDYSF-KRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--------TAVPYLAVRHLVYLRFLNLS  256 (477)
T ss_dssp             CCCEECTTCS-CSCTT-CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC--------CSCCHHHHTTCTTCCEEECC
T ss_pred             cCcEeChhhc-ccCcc-cceeeCCCCccccccCcccccCccccEEECcCCcc--------cccCHHHhcCccccCeeECC
Confidence            9885444333 33444 99999999887666665555444555433222111        11223456788999999999


Q ss_pred             CCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463          242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI  321 (356)
Q Consensus       242 ~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  321 (356)
                      +|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++....
T Consensus       257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            99999888888999999999999999999888899999999999999999999777778899999999999999998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.6e-34  Score=270.32  Aligned_cols=327  Identities=19%  Similarity=0.265  Sum_probs=240.3

Q ss_pred             CcccceEEEccccccccc-----------------CCchHH--hhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCC
Q 041463            1 NQTELRTLVLNKARISDT-----------------IPDWFW--QLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSS   60 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~-----------------~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~   60 (356)
                      ++++|++|+|++|.+++.                 +|..+.  .+ ++|++|++++|.+.+.+|..+ ++++|++|++++
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            478899999999999975                 888887  77 899999999999998888877 599999999999


Q ss_pred             Cc-ccC-cCCCCCCcccCCc------ccccEEecccccccccccc--cccCCCCCcEEEcccCcccccccccccCCCCCc
Q 041463           61 NN-FEG-RLPLCIPKSIGNL------KQLITLVISNNNLSGEIPL--LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR  130 (356)
Q Consensus        61 n~-~~~-~~~~~~~~~~~~l------~~L~~L~l~~~~i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  130 (356)
                      |. +++ .+|    ..+..+      ++|++|++++|.++ .+|.  .+..+++|++|++++|.+.+..| .+..+++|+
T Consensus       283 n~~l~~~~lp----~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          283 NRGISGEQLK----DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             CTTSCHHHHH----HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             CCCCccccch----HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            98 765 443    445444      88999999999888 6777  78888899999999988886666 777888888


Q ss_pred             EEEeeccccccccCccccCCCC-CcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcC-------CCCC
Q 041463          131 FLVLRNNYLSGELPLSLKNCTF-MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVG-------NLSD  202 (356)
Q Consensus       131 ~L~l~~~~l~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-------~l~~  202 (356)
                      +|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+.......++.|++++|.+.+..|..+.       .+.+
T Consensus       357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~  434 (636)
T 4eco_A          357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN  434 (636)
T ss_dssp             EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred             EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence            8888888888 77777888888 888888888887 666654432212378888888887776666666       4445


Q ss_pred             CcccCCCCCccC-------------CCeeeeec---CCccccc-------cccccccEEeecCCcccccCchhhh--ccc
Q 041463          203 MKVEPPKSVQHE-------------GRLRVVTK---GSERKYF-------TTLYLVNLLDLSSTNLSAEIPAELT--SLV  257 (356)
Q Consensus       203 L~~~~~~~~~~~-------------~~~~~~~~---~~~~~~~-------~~~~~L~~L~L~~~~l~~~~~~~~~--~~~  257 (356)
                      |+.+........             ..+.....   ......+       .++++|+.|++++|.+. .+|..+.  .++
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~  513 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP  513 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred             CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence            544333221111             01111000   0111111       12338888999998888 5666665  788


Q ss_pred             ccCeEEccCCcCcCCCCcCcCCCCCccEEEc------cCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCC
Q 041463          258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDL------SKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLN  331 (356)
Q Consensus       258 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L------~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~  331 (356)
                      +|++|++++|.+++ +|..+..+++|++|++      ++|++.+.+|..+..+++|++|++++|++ +.+|... .+.|+
T Consensus       514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~  590 (636)
T 4eco_A          514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNIS  590 (636)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCC
T ss_pred             CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCC
Confidence            89999999999885 7888888899999998      45667778888888899999999999999 4555542 26777


Q ss_pred             CccccccCcc
Q 041463          332 DPSIYEGNLA  341 (356)
Q Consensus       332 ~~~~~~~~~~  341 (356)
                      .++ +.+|+.
T Consensus       591 ~L~-Ls~N~l  599 (636)
T 4eco_A          591 VLD-IKDNPN  599 (636)
T ss_dssp             EEE-CCSCTT
T ss_pred             EEE-CcCCCC
Confidence            777 555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-34  Score=272.42  Aligned_cols=297  Identities=19%  Similarity=0.235  Sum_probs=175.7

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCc-cCC-cCCCCC-CC------CCCcEEecCCCcccCcCCCCCC
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNE-LRG-RVPNSL-GF------NFPATVDLSSNNFEGRLPLCIP   72 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~-~~------~~L~~L~l~~n~~~~~~~~~~~   72 (356)
                      +++|++|++++|.+.+.+|..+.++ ++|++|++++|. +++ .+|..+ .+      ++|++|++++|.++ .    +|
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~----ip  321 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T----FP  321 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTC-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S----CC
T ss_pred             cCCCCEEEecCCcCCccChHHHhcC-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c----cC
Confidence            4566666666666666666666555 566666666665 554 333332 12      55556666555554 2    33


Q ss_pred             c--ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC-CcEEEeeccccc---------
Q 041463           73 K--SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT-LRFLVLRNNYLS---------  140 (356)
Q Consensus        73 ~--~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~---------  140 (356)
                      .  .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. ..|..+..+++ |++|++++|.++         
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~  399 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK  399 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred             chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence            4  45555555555555555554444 4555555555555555554 44444444444 555555555554         


Q ss_pred             ----------------cccCcccc-------CCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCc
Q 041463          141 ----------------GELPLSLK-------NCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV  197 (356)
Q Consensus       141 ----------------~~~~~~l~-------~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  197 (356)
                                      +..|..+.       .+++|+.|++++|.+. .+|..+...++. |+.|++++|.+. .+|...
T Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~-L~~L~Ls~N~l~-~i~~~~  476 (636)
T 4eco_A          400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP-LSSINLMGNMLT-EIPKNS  476 (636)
T ss_dssp             CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC-CSEEECCSSCCS-BCCSSS
T ss_pred             ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC-CCEEECCCCCCC-CcCHHH
Confidence                            33333333       3344444444444444 333333322222 455555555444 222221


Q ss_pred             CC-C-------CCCcccCCCCCccCCCeeeeecCCcccccc--ccccccEEeecCCcccccCchhhhcccccCeEEc---
Q 041463          198 GN-L-------SDMKVEPPKSVQHEGRLRVVTKGSERKYFT--TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL---  264 (356)
Q Consensus       198 ~~-l-------~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L---  264 (356)
                      .. .       ++|+.+........         ..+..+.  .+++|+.|++++|.+.+ .|..+..+++|++|++   
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLT---------KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCC---------BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred             hccccccccccCCccEEECcCCcCC---------ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence            11 1       12332222211111         1223343  88999999999999996 7888889999999999   


Q ss_pred             ---cCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCC
Q 041463          265 ---SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP  322 (356)
Q Consensus       265 ---~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  322 (356)
                         ++|.+.+.+|..+..+++|++|++++|+++ .+|..+.  ++|+.|++++|++.....
T Consensus       547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             cccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence               457777789999999999999999999996 6777655  799999999999986554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-33  Score=264.63  Aligned_cols=143  Identities=20%  Similarity=0.164  Sum_probs=104.9

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      ++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+.+.    .+..+..+++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC----CHHHHTTCTTC
T ss_pred             CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc----CHHHhccCCCC
Confidence            468888888888887767777776 788888888888887666665 588888888888887742    23447778888


Q ss_pred             cEEeccccccccc-ccccccCCCCCcEEEcccCc-ccccccccccCCCCCcEEEeeccccccccCccccCC
Q 041463           82 ITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNS-LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNC  150 (356)
Q Consensus        82 ~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l  150 (356)
                      ++|++++|.+.+. .+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            8888888887653 45667788888888888887 443334567777888888888877776555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6e-33  Score=263.30  Aligned_cols=146  Identities=15%  Similarity=0.058  Sum_probs=76.6

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ++++|++++|.+++..|..|..+ ++|++|++++|.+.+..+..+ ++++|++|++++|.+.+.    .|..|..+++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~  108 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM----AETALSGPKALK  108 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE----CTTTTSSCTTCC
T ss_pred             cCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeeeCCCCccccc----Chhhhccccccc
Confidence            35666666666665555555555 566666666666655545544 456666666666655532    224455555555


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME  154 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  154 (356)
                      +|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|+
T Consensus       109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            555555555544444455555555555555555533323333355555555555554433333333444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=275.16  Aligned_cols=246  Identities=17%  Similarity=0.130  Sum_probs=124.0

Q ss_pred             CcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463          105 LYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL  184 (356)
Q Consensus       105 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l  184 (356)
                      |++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.. ++. |+.|++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~-L~~L~L  345 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG-LPK-VAYIDL  345 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS-CTT-CCEEEC
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC-CCC-CCEEEC
Confidence            333333333333333344444555555555555555444555555555666666655554333333322 222 566666


Q ss_pred             ccCcccccCCCCcCCCCCCcccCCCCCccCC--------CeeeeecC------------------------Ccccccccc
Q 041463          185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG--------RLRVVTKG------------------------SERKYFTTL  232 (356)
Q Consensus       185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~--------~~~~~~~~------------------------~~~~~~~~~  232 (356)
                      ++|.+....+..+..+++|+.+.........        .+......                        .....+..+
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l  425 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV  425 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence            6665554444445555555443222111100        00000000                        000112255


Q ss_pred             ccccEEeecCCcccccCch-hhhcccccCeEEccCCcCcC-----CCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463          233 YLVNLLDLSSTNLSAEIPA-ELTSLVHLGTLNLSHNHLVG-----KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF  306 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~~~-~~~~~~~L~~L~L~~n~i~~-----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  306 (356)
                      ++|+.|++++|.+.+..+. .+..+++|++|++++|.+..     ..+..+..+++|+.|+|++|++++..+..|.++++
T Consensus       426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence            6666677766666532221 23334556666666665541     22344566677777777777777666666777777


Q ss_pred             CCEEEcccCcccccCCCCcccCcCCCcccccc--------------CccccCCCCCCCCCC
Q 041463          307 MNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEG--------------NLALCGDPLPKKCPE  353 (356)
Q Consensus       307 L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~--------------~~~~~~~~~~~~c~~  353 (356)
                      |+.|+|++|++++.+|.... +.|+.+++-.+              .+.+.||||.|+|+.
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred             hheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccccc
Confidence            77777777777765554422 44444331111              234668999999975

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-33  Score=263.92  Aligned_cols=301  Identities=19%  Similarity=0.173  Sum_probs=242.4

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      +++++.|+++++.+....+..+..+ ++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.    .+..|..+++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~  124 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL----PPHVFQNVPL  124 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC----CHHHHcCCCC
Confidence            4678999999999985444445555 899999999999998777666 699999999999998853    2356788999


Q ss_pred             ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  160 (356)
                      |++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++.   .+..+++|+.|++++
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY  201 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCS
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhccc
Confidence            99999999999866666689999999999999999988888899999999999999999843   356788999999999


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      |.+.+..       .+..++.|++++|.+....+....   +|+.+........          ....+..+++|+.|++
T Consensus       202 n~l~~l~-------~~~~L~~L~ls~n~l~~~~~~~~~---~L~~L~L~~n~l~----------~~~~l~~l~~L~~L~L  261 (597)
T 3oja_B          202 NLLSTLA-------IPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLT----------DTAWLLNYPGLVEVDL  261 (597)
T ss_dssp             SCCSEEE-------CCTTCSEEECCSSCCCEEECSCCS---CCCEEECCSSCCC----------CCGGGGGCTTCSEEEC
T ss_pred             Ccccccc-------CCchhheeeccCCcccccccccCC---CCCEEECCCCCCC----------CChhhccCCCCCEEEC
Confidence            9876321       223489999999988754333332   3443333322211          1245778899999999


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE  320 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  320 (356)
                      ++|.+.+..|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.
T Consensus       262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          262 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             CSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence            999999888889999999999999999998 46777788999999999999999 6777788899999999999999876


Q ss_pred             CCCCcccCcCCCcc
Q 041463          321 IPNTNQFQTLNDPS  334 (356)
Q Consensus       321 ~~~~~~l~~l~~~~  334 (356)
                      .  ...++.|+.++
T Consensus       340 ~--~~~~~~L~~L~  351 (597)
T 3oja_B          340 K--LSTHHTLKNLT  351 (597)
T ss_dssp             C--CCTTCCCSEEE
T ss_pred             C--hhhcCCCCEEE
Confidence            4  55677777666

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.8e-33  Score=266.05  Aligned_cols=338  Identities=19%  Similarity=0.201  Sum_probs=221.5

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ++++|+|++|.|++..+..|..+ ++|++|+|++|.+++..+.++ ++++|++|+|++|++++ +|   +..|..+++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~---~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LA---LGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-EC---GGGGTTCTTCC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CC---HHHhcCCCCCC
Confidence            68999999999987767778877 899999999999987777777 58999999999998873 22   35688899999


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccCccccCCCC----CcEEE
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTF----MESLD  157 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~----L~~L~  157 (356)
                      +|++++|.+++..+..|+.+++|++|++++|.+... .|..+..+++|++|++++|.+++..+..+..+.+    ...++
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~  207 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  207 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence            999999999877677789999999999999988753 4667788899999999998876544333322111    11222


Q ss_pred             ecCCcccccCCchh------------------------------------------------------------------
Q 041463          158 LGDNNLSGNIPAWI------------------------------------------------------------------  171 (356)
Q Consensus       158 l~~~~l~~~~~~~~------------------------------------------------------------------  171 (356)
                      ++.|.+....+...                                                                  
T Consensus       208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence            22221110000000                                                                  


Q ss_pred             -----------------------------------hcccccceeEEEcccCcccccCCCCc-------------------
Q 041463          172 -----------------------------------GASMPGLLHILDLSHNDLSGFIPPRV-------------------  197 (356)
Q Consensus       172 -----------------------------------~~~~~~~L~~L~l~~~~l~~~~~~~~-------------------  197 (356)
                                                         .......++.|++.++.+.......+                   
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  367 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  367 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred             hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence                                               00000013333333333221111111                   


Q ss_pred             CCCCCCcccCCCCCc-----------------------------------cCCCeeee----------------------
Q 041463          198 GNLSDMKVEPPKSVQ-----------------------------------HEGRLRVV----------------------  220 (356)
Q Consensus       198 ~~l~~L~~~~~~~~~-----------------------------------~~~~~~~~----------------------  220 (356)
                      ..+++++........                                   ....+...                      
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            111122111000000                                   00000000                      


Q ss_pred             ---------ecCCccccccccccccEEeecCCccc-ccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC
Q 041463          221 ---------TKGSERKYFTTLYLVNLLDLSSTNLS-AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK  290 (356)
Q Consensus       221 ---------~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~  290 (356)
                               ........+..++.++.|++++|.+. ...|..|..+++|++|++++|.+++..|..|..+++|++|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence                     00111223445667788888887643 34566788888999999999999877788899999999999999


Q ss_pred             CcccccCCccccCcCCCCEEEcccCcccccCCCC-ccc-CcCCCccccccCccccCCCCCCCCCC
Q 041463          291 NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQF-QTLNDPSIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       291 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l-~~l~~~~~~~~~~~~~~~~~~~~c~~  353 (356)
                      |++++..+..|.++++|++|++++|++++.+|.. ..+ +.|+.+       .+.||||.|||+.
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L-------~L~~Np~~C~C~~  585 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-------NLTQNDFACTCEH  585 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE-------ECTTCCBCCSGGG
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE-------EeeCCCCcccCCc
Confidence            9999778888999999999999999999888876 444 345544       4567999999973

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-33  Score=258.76  Aligned_cols=317  Identities=19%  Similarity=0.196  Sum_probs=251.0

Q ss_pred             CcccceEEEcccccccccC-CchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463            1 NQTELRTLVLNKARISDTI-PDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNL   78 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l   78 (356)
                      ++++|++|++++|.+.+.+ +..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+++..+.  ...+..+
T Consensus        52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l  128 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPL  128 (455)
T ss_dssp             SCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTC
T ss_pred             cCccccEEECcCCcccceECccccccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC--cccccCc
Confidence            4789999999999987544 4556666 899999999999998777777 599999999999998753221  1337889


Q ss_pred             ccccEEeccccccccccccc-ccCCCCCcEEEcccCcccccccccccCC--CCCcEEEeeccccccccCcc--------c
Q 041463           79 KQLITLVISNNNLSGEIPLL-FSNSSFLYILDMSNNSLSGSIPESIGSL--RTLRFLVLRNNYLSGELPLS--------L  147 (356)
Q Consensus        79 ~~L~~L~l~~~~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~--------l  147 (356)
                      ++|++|++++|.+.+..|.. +..+++|++|++++|.+....+..+..+  .+|+.|++++|.+.+..+..        +
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  208 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP  208 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence            99999999999998776765 8899999999999999987777766654  56777777777766433222        2


Q ss_pred             cCCCCCcEEEecCCcccccCCchhhcc-------------------------------------cccceeEEEcccCccc
Q 041463          148 KNCTFMESLDLGDNNLSGNIPAWIGAS-------------------------------------MPGLLHILDLSHNDLS  190 (356)
Q Consensus       148 ~~l~~L~~L~l~~~~l~~~~~~~~~~~-------------------------------------~~~~L~~L~l~~~~l~  190 (356)
                      ..+++|+.|++++|.+.+..+..+...                                     ....++.|++++|.+.
T Consensus       209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  288 (455)
T 3v47_A          209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF  288 (455)
T ss_dssp             TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred             cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence            345667777777776654333222111                                     1134899999999998


Q ss_pred             ccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCc
Q 041463          191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLV  270 (356)
Q Consensus       191 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~  270 (356)
                      +..+..+..+++|+.+........        ...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       289 ~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          289 ALLKSVFSHFTDLEQLTLAQNEIN--------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR  360 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred             ccchhhcccCCCCCEEECCCCccc--------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence            888888999998888665543322        123445778899999999999999888889999999999999999999


Q ss_pred             CCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccC
Q 041463          271 GKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ  328 (356)
Q Consensus       271 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~  328 (356)
                      +..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|....+.
T Consensus       361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~  418 (455)
T 3v47_A          361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS  418 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred             ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHH
Confidence            7788999999999999999999997777788999999999999999999999775553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.2e-32  Score=258.32  Aligned_cols=157  Identities=25%  Similarity=0.176  Sum_probs=108.8

Q ss_pred             ceeEEEcccCccccc--CCCCcCCCCCCcccCCCCCcc---------CCCeeeee------cCCcc-ccccccccccEEe
Q 041463          178 LLHILDLSHNDLSGF--IPPRVGNLSDMKVEPPKSVQH---------EGRLRVVT------KGSER-KYFTTLYLVNLLD  239 (356)
Q Consensus       178 ~L~~L~l~~~~l~~~--~~~~~~~l~~L~~~~~~~~~~---------~~~~~~~~------~~~~~-~~~~~~~~L~~L~  239 (356)
                      .++.|++++|.+.+.  .+..+..+++|+.+.......         ...+....      ....+ ..+..+++|+.|+
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  430 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD  430 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence            389999999998755  366777777777755443221         11111111      11111 3456677788888


Q ss_pred             ecCCcccccCchhhhcccccCeEEccCCcCcC-CCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      +++|.+.+..+..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus       431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  510 (606)
T 3vq2_A          431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL  510 (606)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence            88887776677777777888888888888775 35777778888888888888887777777788888888888888888


Q ss_pred             ccCCCC-cccCcCCCcc
Q 041463          319 GEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       319 ~~~~~~-~~l~~l~~~~  334 (356)
                      +.+|.. ..++.|+.++
T Consensus       511 ~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          511 FLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             CEEGGGTTTCTTCCEEE
T ss_pred             CcCHHHccCCCcCCEEE
Confidence            776554 6677777777

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.5e-32  Score=262.02  Aligned_cols=322  Identities=17%  Similarity=0.229  Sum_probs=249.1

Q ss_pred             CcccceEEEcccccccccCCchHHhhccCCcEeeccCCc-cCC-cCCC--------CCCCCCCcEEecCCCcccCcCCCC
Q 041463            1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNE-LRG-RVPN--------SLGFNFPATVDLSSNNFEGRLPLC   70 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~--------~~~~~~L~~L~l~~n~~~~~~~~~   70 (356)
                      ++++|++|+|++|.+.+.+|..+..+ ++|++|++++|. +++ .+|.        ...+++|++|++++|.+. .    
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~----  562 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E----  562 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B----
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-c----
Confidence            46889999999999999999989888 899999999998 776 4443        234679999999999988 3    


Q ss_pred             CCc--ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC-CcEEEeeccccccccCccc
Q 041463           71 IPK--SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT-LRFLVLRNNYLSGELPLSL  147 (356)
Q Consensus        71 ~~~--~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~l  147 (356)
                      +|.  .+..+++|+.|++++|.+. .+| .|..+++|++|++++|.+. ..|..+..+++ |++|++++|.++ .+|..+
T Consensus       563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~  638 (876)
T 4ecn_A          563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF  638 (876)
T ss_dssp             CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred             cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence            556  7889999999999999998 677 8899999999999999999 77878888888 999999999998 778777


Q ss_pred             cCCCC--CcEEEecCCcccccCCchh---hcccccceeEEEcccCcccccCCCCc-CCCCCCcccCCCCCccCCCeeeee
Q 041463          148 KNCTF--MESLDLGDNNLSGNIPAWI---GASMPGLLHILDLSHNDLSGFIPPRV-GNLSDMKVEPPKSVQHEGRLRVVT  221 (356)
Q Consensus       148 ~~l~~--L~~L~l~~~~l~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~~~~~~~~~~~~~~~~~  221 (356)
                      ..++.  |+.|++++|.+.+..|...   .......|+.|++++|.+. .+|..+ ..+++|+.+........ .++...
T Consensus       639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            76654  9999999999876554322   1111124999999999988 455443 36777776555443222 111111


Q ss_pred             cCCccccccccccccEEeecCCcccccCchhhh--cccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC------Ccc
Q 041463          222 KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT--SLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK------NKL  293 (356)
Q Consensus       222 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~------n~i  293 (356)
                      .........++++|+.|+|++|.+. .+|..+.  .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++      |.+
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence            1111112345568999999999998 5666775  88999999999999985 788888999999999976      777


Q ss_pred             cccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccC
Q 041463          294 SGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN  339 (356)
Q Consensus       294 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~  339 (356)
                      .+.+|..+..+++|+.|+|++|++ +.+|... .+.|+.++ +.+|
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~Ld-Ls~N  837 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILD-IADN  837 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEE-CCSC
T ss_pred             cccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEE-CCCC
Confidence            778898999999999999999999 5666542 36777777 4444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.9e-32  Score=262.35  Aligned_cols=303  Identities=20%  Similarity=0.227  Sum_probs=170.4

Q ss_pred             CCchHHhhccCCcEeeccCCccCC-----------------cCCCCC---CCCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463           19 IPDWFWQLSLTLDELDVAYNELRG-----------------RVPNSL---GFNFPATVDLSSNNFEGRLPLCIPKSIGNL   78 (356)
Q Consensus        19 ~~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l   78 (356)
                      +|..+..+ ++|++|+|++|.+++                 .+|..+   ++++|++|++++|.+.+.    +|..+..+
T Consensus       440 IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L  514 (876)
T 4ecn_A          440 ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDL  514 (876)
T ss_dssp             ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGC
T ss_pred             hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCC
Confidence            45555555 666777777666665                 134433   466677777766665553    33556666


Q ss_pred             ccccEEeccccc-ccc-cccccccCCC-------CCcEEEcccCcccccccc--cccCCCCCcEEEeeccccccccCccc
Q 041463           79 KQLITLVISNNN-LSG-EIPLLFSNSS-------FLYILDMSNNSLSGSIPE--SIGSLRTLRFLVLRNNYLSGELPLSL  147 (356)
Q Consensus        79 ~~L~~L~l~~~~-i~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~l  147 (356)
                      ++|++|++++|. +++ .+|..+..++       +|++|++++|.+. ..|.  .+..+++|++|++++|.++ .+| .+
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence            666666666665 554 4554444333       6666666666666 4555  5666666666666666666 455 56


Q ss_pred             cCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCC--CcccCCCCCccCCCe--------
Q 041463          148 KNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSD--MKVEPPKSVQHEGRL--------  217 (356)
Q Consensus       148 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~--L~~~~~~~~~~~~~~--------  217 (356)
                      ..+++|+.|++++|.+. .+|..+.. ++..|+.|++++|.+. .+|..+..+..  |+.+........+..        
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             cCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            66666666666666665 55544332 2222666666666655 44544444332  333222222111110        


Q ss_pred             -------eeee------cCCccccccccccccEEeecCCcccccCchhhh-------cccccCeEEccCCcCcCCCCcCc
Q 041463          218 -------RVVT------KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT-------SLVHLGTLNLSHNHLVGKIPEEI  277 (356)
Q Consensus       218 -------~~~~------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-------~~~~L~~L~L~~n~i~~~~~~~~  277 (356)
                             ....      .......+..+++|+.|+|++|.+.......+.       ++++|++|+|++|.++ .+|..+
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l  747 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF  747 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHh
Confidence                   0000      011122233556677777777776632222222       1226777777777776 566666


Q ss_pred             C--CCCCccEEEccCCcccccCCccccCcCCCCEEEccc------CcccccCCCC-cccCcCCCcc
Q 041463          278 G--NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY------NNLSGEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       278 ~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~------n~~~~~~~~~-~~l~~l~~~~  334 (356)
                      .  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|.. ..++.|+.++
T Consensus       748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~  812 (876)
T 4ecn_A          748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ  812 (876)
T ss_dssp             STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence            5  67777777777777774 566666777777777755      5566666643 6666676666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.98  E-value=6.5e-31  Score=252.60  Aligned_cols=327  Identities=21%  Similarity=0.189  Sum_probs=239.5

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC----------------------------------C
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL----------------------------------G   49 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------------------~   49 (356)
                      +|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+                                  .
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~  327 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW  327 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred             CCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence            47777777777776666666665 677777777776665443322                                  3


Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc--ccccccCC--CCCcEEEcccCcccccccccccC
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE--IPLLFSNS--SFLYILDMSNNSLSGSIPESIGS  125 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~  125 (356)
                      +++|++|++++|.+.+.    .+..|..+++|++|++++|.+...  ....|..+  +.|++|++++|.+....+..+..
T Consensus       328 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGI----KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             CTTCCEEECCSCCBCCC----CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCCEEECCCCccCCC----ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            56677777777776642    345688899999999999875322  22233332  57999999999998888888888


Q ss_pred             CCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc--ccCCCCcCCCCC
Q 041463          126 LRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS--GFIPPRVGNLSD  202 (356)
Q Consensus       126 l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~  202 (356)
                      +++|++|++++|.+++.++ ..+..+++|+.|++++|.+.+..+..+. .++. ++.|++.+|.+.  +..|..+..+++
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~-L~~L~l~~n~l~~~~~~p~~~~~l~~  481 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPS-LQRLMLRRVALKNVDSSPSPFQPLRN  481 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTT-CCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcc-cccchhccccccccccCCcccccCCC
Confidence            9999999999999876555 5788889999999999987744444443 3444 899999888775  456777888888


Q ss_pred             CcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCc--------hhhhcccccCeEEccCCcCcCCCC
Q 041463          203 MKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP--------AELTSLVHLGTLNLSHNHLVGKIP  274 (356)
Q Consensus       203 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------~~~~~~~~L~~L~L~~n~i~~~~~  274 (356)
                      |+.+........        ...+..+..+++|+.|++++|.+.+...        ..+..+++|++|++++|.+....+
T Consensus       482 L~~L~Ls~N~l~--------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          482 LTILDLSNNNIA--------NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             CCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCEEECCCCCCC--------cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            877555443221        2234456778889999999988875422        236778889999999998884444


Q ss_pred             cCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-c-ccCcCCCccccccCccccCCC
Q 041463          275 EEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-N-QFQTLNDPSIYEGNLALCGDP  346 (356)
Q Consensus       275 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~-~l~~l~~~~~~~~~~~~~~~~  346 (356)
                      ..|..+++|++|++++|++++..+..|..+++|+.|++++|++++.+|.. . .++.|+.++ +.+|+..|..+
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~-l~~N~~~c~c~  626 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD-MRFNPFDCTCE  626 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE-CTTCCCCBCCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE-ccCCCcccCCc
Confidence            56888899999999999998767777888889999999999988877765 2 578888888 78888888654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=5.7e-31  Score=232.71  Aligned_cols=301  Identities=20%  Similarity=0.320  Sum_probs=240.7

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++|++|+++++.+.. ++ .+..+ ++|++|++++|.+++..+ +..+++|++|++++|.++.     + ..+..+++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~-~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L  112 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYL-TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-----I-SALQNLTNL  112 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTC
T ss_pred             cccccEEEEeCCcccc-ch-hhhhc-CCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-----c-hHHcCCCcC
Confidence            5789999999999974 44 36666 899999999999985544 5579999999999998873     2 358899999


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      ++|++++|.+.+..+  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            999999999985433  889999999999999765333 348899999999999999874332  888999999999999


Q ss_pred             cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS  241 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  241 (356)
                      .+.+ .+. + ..++. ++.+++++|.+.+..+  +..+++|+.+.........          ...+..+++|+.|+++
T Consensus       188 ~l~~-~~~-~-~~l~~-L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~----------~~~~~~l~~L~~L~l~  251 (347)
T 4fmz_A          188 QIED-ISP-L-ASLTS-LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD----------LSPLANLSQLTWLEIG  251 (347)
T ss_dssp             CCCC-CGG-G-GGCTT-CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----------CGGGTTCTTCCEEECC
T ss_pred             cccc-ccc-c-cCCCc-cceeecccCCCCCCch--hhcCCcCCEEEccCCccCC----------CcchhcCCCCCEEECC
Confidence            9873 333 2 22333 9999999998875433  6667777665544432211          1116788999999999


Q ss_pred             CCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463          242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI  321 (356)
Q Consensus       242 ~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  321 (356)
                      +|.+.+.  ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus       252 ~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          252 TNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             CCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            9999853  468889999999999999984 3 46788999999999999999888888999999999999999999887


Q ss_pred             CCCcccCcCCCccccccC
Q 041463          322 PNTNQFQTLNDPSIYEGN  339 (356)
Q Consensus       322 ~~~~~l~~l~~~~~~~~~  339 (356)
                      | ...++.|+.++ +.+|
T Consensus       328 ~-~~~l~~L~~L~-l~~N  343 (347)
T 4fmz_A          328 P-LASLSKMDSAD-FANQ  343 (347)
T ss_dssp             G-GGGCTTCSEES-SSCC
T ss_pred             C-hhhhhccceee-hhhh
Confidence            7 88888888887 4333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=2e-31  Score=250.39  Aligned_cols=334  Identities=17%  Similarity=0.150  Sum_probs=223.2

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.++ .+|    ..  .+++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp----~~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS----CC--PMASL  123 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC----SC--CCTTC
T ss_pred             CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC----cc--ccccC
Confidence            468899999999987666777777 889999999999887777766 5889999999999887 333    33  68888


Q ss_pred             cEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccccCCCCC--cEEEeecccc--ccccCccccCCC-----
Q 041463           82 ITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL--RFLVLRNNYL--SGELPLSLKNCT-----  151 (356)
Q Consensus        82 ~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~l--~~~~~~~l~~l~-----  151 (356)
                      ++|++++|.+.+. .|..|..+++|++|++++|.+....   +..+++|  ++|++++|.+  ++..+..+..+.     
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~  200 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH  200 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence            8889988888753 3577888888888888888776422   2333333  6666666655  333333322211     


Q ss_pred             ----------------------------------------------------------------------------CCcE
Q 041463          152 ----------------------------------------------------------------------------FMES  155 (356)
Q Consensus       152 ----------------------------------------------------------------------------~L~~  155 (356)
                                                                                                  +|++
T Consensus       201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~  280 (562)
T 3a79_B          201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY  280 (562)
T ss_dssp             EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred             EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence                                                                                        4555


Q ss_pred             EEecCCcccccCCchhh----------------------------------------------------cccccceeEEE
Q 041463          156 LDLGDNNLSGNIPAWIG----------------------------------------------------ASMPGLLHILD  183 (356)
Q Consensus       156 L~l~~~~l~~~~~~~~~----------------------------------------------------~~~~~~L~~L~  183 (356)
                      |++++|.+.+.+|..++                                                    ... ..++.|+
T Consensus       281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~  359 (562)
T 3a79_B          281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP-SSFTFLN  359 (562)
T ss_dssp             EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC-CCCCEEE
T ss_pred             EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC-CCceEEE
Confidence            55555554433333220                                                    112 2377777


Q ss_pred             cccCcccccCCCCcCCCCCCcccCCCCCccCC------------Ceeeee------cC-CccccccccccccEEeecCCc
Q 041463          184 LSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG------------RLRVVT------KG-SERKYFTTLYLVNLLDLSSTN  244 (356)
Q Consensus       184 l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~------------~~~~~~------~~-~~~~~~~~~~~L~~L~L~~~~  244 (356)
                      +++|.+.+..+..+..+++|+.+.........            .+....      .. .....+..+++|+.|++++|.
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence            77777776666677777766664443322111            111111      11 223346778999999999999


Q ss_pred             ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC
Q 041463          245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT  324 (356)
Q Consensus       245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  324 (356)
                      +.+..+..+.  ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+-.
T Consensus       440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            9865554443  68999999999998 78887779999999999999999444444899999999999999998765543


Q ss_pred             cccCcC---CCccccccCccccCCCCCCCCCC
Q 041463          325 NQFQTL---NDPSIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       325 ~~l~~l---~~~~~~~~~~~~~~~~~~~~c~~  353 (356)
                      ..+..+   .... +. +...|+.|+...|..
T Consensus       517 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          517 RYLSEWINKHSGV-VR-NSAGSVAPDSAKCSG  546 (562)
T ss_dssp             HHHHHHHHHTTTT-EE-CSSSSBCSSSSCBSS
T ss_pred             HHHHHHHHhcCCc-cc-ccccCCCCCCCccCC
Confidence            221211   1111 11 112347788888865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.4e-31  Score=232.77  Aligned_cols=250  Identities=29%  Similarity=0.442  Sum_probs=214.9

Q ss_pred             cCCcEeeccCCccCC--cCCCCC-CCCCCcEEecCC-CcccCcCCCCCCcccCCcccccEEecccccccccccccccCCC
Q 041463           28 LTLDELDVAYNELRG--RVPNSL-GFNFPATVDLSS-NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS  103 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~--~~~~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~  103 (356)
                      .++++|+++++.+.+  ..+..+ ++++|++|++++ |.+.+.    +|..+..+++|++|++++|.+.+..|..|..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            478899999999887  666666 589999999995 877764    457788899999999999999888888999999


Q ss_pred             CCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCC-CCcEEEecCCcccccCCchhhcccccceeEE
Q 041463          104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCT-FMESLDLGDNNLSGNIPAWIGASMPGLLHIL  182 (356)
Q Consensus       104 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L  182 (356)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+... .  ++.|
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~--L~~L  202 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N--LAFV  202 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C--CSEE
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-c--ccEE
Confidence            999999999999988888899999999999999999888899999888 99999999999987777776553 3  9999


Q ss_pred             EcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeE
Q 041463          183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTL  262 (356)
Q Consensus       183 ~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L  262 (356)
                      ++++|.+.+..+..+                                ..+++|+.|++++|.+.+..+. +..+++|++|
T Consensus       203 ~Ls~N~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L  249 (313)
T 1ogq_A          203 DLSRNMLEGDASVLF--------------------------------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL  249 (313)
T ss_dssp             ECCSSEEEECCGGGC--------------------------------CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEE
T ss_pred             ECcCCcccCcCCHHH--------------------------------hcCCCCCEEECCCCceeeecCc-ccccCCCCEE
Confidence            999998876555444                                3455666799999999865554 7778999999


Q ss_pred             EccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       263 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      ++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+..
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence            99999999889999999999999999999999888876 88999999999999844

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.6e-30  Score=225.23  Aligned_cols=267  Identities=20%  Similarity=0.240  Sum_probs=184.5

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ++++++++++.++ .+|..+.   +++++|++++|.+++..+..+ ++++|++|++++|.+++.    .|..+..+++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~  103 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----SPGAFAPLVKLE  103 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----CTTTTTTCTTCC
T ss_pred             CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee----CHHHhcCCCCCC
Confidence            5677777777776 3554332   577778888777776655444 577788888887777642    245677777788


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccc--ccCccccCCCCCcEEEecC
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG--ELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~  160 (356)
                      +|++++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++
T Consensus       104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            8888777776 3343332  677788887777776666667777778888887777643  4556677777788888877


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      |.+. .++..+.    ..++.|++++|.+.+..+..+                                ..+++|+.|++
T Consensus       181 n~l~-~l~~~~~----~~L~~L~l~~n~l~~~~~~~~--------------------------------~~l~~L~~L~L  223 (330)
T 1xku_A          181 TNIT-TIPQGLP----PSLTELHLDGNKITKVDAASL--------------------------------KGLNNLAKLGL  223 (330)
T ss_dssp             SCCC-SCCSSCC----TTCSEEECTTSCCCEECTGGG--------------------------------TTCTTCCEEEC
T ss_pred             Cccc-cCCcccc----ccCCEEECCCCcCCccCHHHh--------------------------------cCCCCCCEEEC
Confidence            7776 3444332    337777777777664433333                                34455666888


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccC------cCCCCEEEccc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS------LIFMNHLNLSY  314 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~l~~  314 (356)
                      ++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..      .+.++.+++++
T Consensus       224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence            888887766667777888888888888887 67777788888888888888888665555543      36777888888


Q ss_pred             Ccccc
Q 041463          315 NNLSG  319 (356)
Q Consensus       315 n~~~~  319 (356)
                      |++..
T Consensus       303 N~~~~  307 (330)
T 1xku_A          303 NPVQY  307 (330)
T ss_dssp             SSSCG
T ss_pred             Ccccc
Confidence            88764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=246.20  Aligned_cols=327  Identities=20%  Similarity=0.196  Sum_probs=206.1

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ++++|++++|.+++..+..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+++.    .+..|..+++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~  103 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQ  103 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCC
T ss_pred             cccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc----CHhhhcCccccc
Confidence            57888888888887666677776 888888888888887666666 588888888888887642    235677888888


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccCccccCCCCC----cEEE
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFM----ESLD  157 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L----~~L~  157 (356)
                      +|++++|.+....+..+..+++|++|++++|.+... .|..+.++++|++|++++|.+++..+..+..+++|    +.++
T Consensus       104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence            888888888755555678888888888888887753 47778888888888888888775555556555555    5666


Q ss_pred             ecCCcccccCCchhhc----------------------------------------------------------------
Q 041463          158 LGDNNLSGNIPAWIGA----------------------------------------------------------------  173 (356)
Q Consensus       158 l~~~~l~~~~~~~~~~----------------------------------------------------------------  173 (356)
                      +++|.+.+..+..+..                                                                
T Consensus       184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            6666554322221110                                                                


Q ss_pred             ----------------ccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCC--------------------------
Q 041463          174 ----------------SMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSV--------------------------  211 (356)
Q Consensus       174 ----------------~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~--------------------------  211 (356)
                                      .+ ..++.|+++++.+. .+|..+..+ .|+.+.....                          
T Consensus       264 l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred             hhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence                            01 12455555555443 233222222 1111100000                          


Q ss_pred             ------ccCCCeeeeecC----------------------------CccccccccccccEEeecCCcccccCc-hhhhcc
Q 041463          212 ------QHEGRLRVVTKG----------------------------SERKYFTTLYLVNLLDLSSTNLSAEIP-AELTSL  256 (356)
Q Consensus       212 ------~~~~~~~~~~~~----------------------------~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~~  256 (356)
                            .....+......                            ..+..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus       341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence                  000000000000                            000113445556666666666554333 345666


Q ss_pred             cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc-ccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcc
Q 041463          257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS-GSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~  334 (356)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|.. ..++.|+.++
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence            77777777777776666677777778888888888776 356777777888888888888888776644 6777777777


Q ss_pred             ccccC
Q 041463          335 IYEGN  339 (356)
Q Consensus       335 ~~~~~  339 (356)
                       +.+|
T Consensus       501 -l~~n  504 (570)
T 2z63_A          501 -MASN  504 (570)
T ss_dssp             -CCSS
T ss_pred             -CCCC
Confidence             4344

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-30  Score=227.89  Aligned_cols=282  Identities=20%  Similarity=0.238  Sum_probs=168.9

Q ss_pred             CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      +++.++++++.++. +|..+ .++|+.|++++|.+.+.    .+..+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI-SPDTTLLDLQNNDISEL----RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC-CTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCccc-cCCCC-CCCCeEEECCCCcCCcc----CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            46666666666653 33222 25666666666666531    12455666666666666666665556666666666666


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccc--cCCchhhcccccceeEEEccc
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG--NIPAWIGASMPGLLHILDLSH  186 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~~L~~L~l~~  186 (356)
                      ++++|.+. ..|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+.. +  .++.|++++
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l--~L~~L~l~~  181 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L--KLNYLRISE  181 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C--CCSCCBCCS
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C--ccCEEECcC
Confidence            66666666 3333222  566666666666664444446666666666666666542  22222222 2  266666666


Q ss_pred             CcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccC
Q 041463          187 NDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSH  266 (356)
Q Consensus       187 ~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~  266 (356)
                      |.+.+ +|..+.  ++|+.+.......        .......+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus       182 n~l~~-l~~~~~--~~L~~L~l~~n~i--------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          182 AKLTG-IPKDLP--ETLNELHLDHNKI--------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN  250 (332)
T ss_dssp             SBCSS-CCSSSC--SSCSCCBCCSSCC--------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             CCCCc-cCcccc--CCCCEEECCCCcC--------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence            66553 332221  2222211111100        111223455666777788888888876666788888888888888


Q ss_pred             CcCcCCCCcCcCCCCCccEEEccCCcccccCCccccC------cCCCCEEEcccCccc--ccCCCC-cccCcCCCcc
Q 041463          267 NHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS------LIFMNHLNLSYNNLS--GEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       267 n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~-~~l~~l~~~~  334 (356)
                      |.+. .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|++.  +..|.. ..++.|+.++
T Consensus       251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            8887 67777888888888888888888666665554      356788888888887  334433 5566666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=252.75  Aligned_cols=312  Identities=21%  Similarity=0.175  Sum_probs=179.7

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcC-CCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRV-PNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      +++++|+|++|.+++..+..|..+ ++|++|++++|.....+ +..+ ++++|++|++++|.+.+.    .|..|..+++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~   98 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL----HPDAFQGLFH   98 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE----CTTSSCSCSS
T ss_pred             CCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc----CHhHccCCcc
Confidence            456777777777766666666665 67777777766443333 4444 467777777777766542    2356666777


Q ss_pred             ccEEeccccccccccccc--ccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccccccCccccCC--CCCcE
Q 041463           81 LITLVISNNNLSGEIPLL--FSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGELPLSLKNC--TFMES  155 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l--~~L~~  155 (356)
                      |++|++++|.+.+..+..  |..+++|++|++++|.+....+ ..+.++++|++|++++|.+++..+..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            777777777666544333  6667777777777776664433 356667777777777777665555555555  66777


Q ss_pred             EEecCCcccccCCchhhccc----ccceeEEEcccCcccccCCCCcCCC---CCCcccCCC-------------------
Q 041463          156 LDLGDNNLSGNIPAWIGASM----PGLLHILDLSHNDLSGFIPPRVGNL---SDMKVEPPK-------------------  209 (356)
Q Consensus       156 L~l~~~~l~~~~~~~~~~~~----~~~L~~L~l~~~~l~~~~~~~~~~l---~~L~~~~~~-------------------  209 (356)
                      |++++|.+.+..+..+....    ...++.|++++|.+.+..+..+...   ..+......                   
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            77777766544443321100    0026777777776554444333221   001100000                   


Q ss_pred             ---CC--ccCCCeeeee---cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCC
Q 041463          210 ---SV--QHEGRLRVVT---KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE  281 (356)
Q Consensus       210 ---~~--~~~~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~  281 (356)
                         ..  .....+....   ....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..++
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence               00  0000000000   011223455666677777777776666666666667777777777776655566666677


Q ss_pred             CccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          282 WLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       282 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +|++|++++|.+....+..|..+++|++|++++|.+++
T Consensus       339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            77777777777665555566667777777777776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.3e-30  Score=241.14  Aligned_cols=301  Identities=21%  Similarity=0.209  Sum_probs=225.3

Q ss_pred             CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      ++++|++|++++|.+++..|..|..+ ++|++|++++|.++. ++.. .+++|++|++++|.+++.   .+|..+..+++
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~  116 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKLVK-ISCH-PTVNLKHLDLSFNAFDAL---PICKEFGNMSQ  116 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEEECCSSCCCE-EECC-CCCCCSEEECCSSCCSSC---CCCGGGGGCTT
T ss_pred             ccccccEEecCCCccCCcChHHhhcc-cCCCEEecCCCceee-cCcc-ccCCccEEeccCCccccc---cchhhhccCCc
Confidence            46899999999999998778888888 899999999999984 5555 899999999999998741   23567888999


Q ss_pred             ccEEecccccccccccccccCCCCC--cEEEcccCcc--cccccccccCC------------------------------
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFL--YILDMSNNSL--SGSIPESIGSL------------------------------  126 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~l------------------------------  126 (356)
                      |++|++++|.+.+   ..+..+++|  ++|++++|.+  ....|..+..+                              
T Consensus       117 L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          117 LKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             CCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             ceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence            9999999988764   234455555  6666666655  32333222221                              


Q ss_pred             -----------------------------------------------------CCCcEEEeeccccccccCccc------
Q 041463          127 -----------------------------------------------------RTLRFLVLRNNYLSGELPLSL------  147 (356)
Q Consensus       127 -----------------------------------------------------~~L~~L~l~~~~l~~~~~~~l------  147 (356)
                                                                           ++|++|++++|.+++.+|..+      
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  273 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT  273 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred             eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence                                                                 145555555555544333332      


Q ss_pred             -----------------------------------------------cCCCCCcEEEecCCcccccCCchhhccccccee
Q 041463          148 -----------------------------------------------KNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH  180 (356)
Q Consensus       148 -----------------------------------------------~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~  180 (356)
                                                                     ..+++|++|++++|.+.+..+..+.. ++. |+
T Consensus       274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~-L~  351 (520)
T 2z7x_B          274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH-LTE-LE  351 (520)
T ss_dssp             CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCC-CSS-CC
T ss_pred             cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhcc-CCC-CC
Confidence                                                           56788999999999988766766543 444 99


Q ss_pred             EEEcccCcccc--cCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccc
Q 041463          181 ILDLSHNDLSG--FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVH  258 (356)
Q Consensus       181 ~L~l~~~~l~~--~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~  258 (356)
                      .|++++|.+.+  .+|..+..+++|+.+..........+       ....+..+++|+.|++++|.+.+..+..+.  ++
T Consensus       352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~  422 (520)
T 2z7x_B          352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE-------KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR  422 (520)
T ss_dssp             EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG-------GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred             EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc-------ccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence            99999999875  44566778888887655544332211       223466788999999999999876665553  79


Q ss_pred             cCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCC
Q 041463          259 LGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP  322 (356)
Q Consensus       259 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  322 (356)
                      |++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus       423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999999999 788888899999999999999995444458899999999999999987544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.8e-30  Score=226.74  Aligned_cols=282  Identities=24%  Similarity=0.312  Sum_probs=226.2

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++|++|++++|.+++. +. +..+ ++|++|++++|.+++ .+.+..+++|++|++++|.+.+     ++. +..+++|
T Consensus        65 ~~~L~~L~l~~n~i~~~-~~-~~~l-~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~i~~-----~~~-~~~l~~L  134 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDI-SP-LSNL-VKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDNISD-----ISP-LANLTKM  134 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTC-TTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSCCCC-----CGG-GTTCTTC
T ss_pred             cCCccEEEccCCccccc-hh-hhcC-CcCCEEEccCCcccC-chHHcCCCcCCEEECcCCcccC-----chh-hccCCce
Confidence            67899999999999854 33 6666 899999999999985 4555579999999999999873     233 7889999


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      ++|++++|...... ..+..+++|++|++++|.+....+  +..+++|++|++++|.+.+. +. +..+++|+.+++++|
T Consensus       135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVN  209 (347)
T ss_dssp             CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSS
T ss_pred             eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccC
Confidence            99999999655333 448899999999999999885444  78899999999999999743 33 888999999999999


Q ss_pred             cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS  241 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  241 (356)
                      .+.+..+  + ..++. ++.|++++|.+.+..+  +..+++|+.+.........          ...+..+++|+.|+++
T Consensus       210 ~l~~~~~--~-~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------~~~~~~l~~L~~L~l~  273 (347)
T 4fmz_A          210 QITDITP--V-ANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD----------INAVKDLTKLKMLNVG  273 (347)
T ss_dssp             CCCCCGG--G-GGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------CGGGTTCTTCCEEECC
T ss_pred             CCCCCch--h-hcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC----------ChhHhcCCCcCEEEcc
Confidence            9874333  2 22333 9999999999875433  7777777775554432221          1346788999999999


Q ss_pred             CCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       242 ~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      +|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       274 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          274 SNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999854  458889999999999999987778889999999999999999996555  888999999999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=1.2e-29  Score=232.93  Aligned_cols=300  Identities=24%  Similarity=0.319  Sum_probs=153.4

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++|++|++++|.+++..+  +..+ ++|++|++++|.+.+..+ ..++++|++|++++|.+.+     ++ .+..+++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L  136 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD-----ID-PLKNLTNL  136 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----CG-GGTTCTTC
T ss_pred             hcCCCEEECCCCccCCchh--hhcc-ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC-----Ch-HHcCCCCC
Confidence            3455555555555553222  3333 555555555555553333 3345555555555555542     11 14555556


Q ss_pred             cEEeccccccccccc-------------------ccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccc
Q 041463           82 ITLVISNNNLSGEIP-------------------LLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE  142 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~-------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  142 (356)
                      ++|++++|.+.+...                   ..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+.
T Consensus       137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  214 (466)
T 1o6v_A          137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI  214 (466)
T ss_dssp             SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence            666665555542210                   0122333334444444433321  1133344444444444444322


Q ss_pred             cCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeec
Q 041463          143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTK  222 (356)
Q Consensus       143 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~  222 (356)
                      .+  +..+++|+.|++++|.+.+ .+ .+ ..++. |+.|++++|.+.+..+  +..+++|+.+.........       
T Consensus       215 ~~--~~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-------  279 (466)
T 1o6v_A          215 TP--LGILTNLDELSLNGNQLKD-IG-TL-ASLTN-LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-------  279 (466)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCC-CG-GG-GGCTT-CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-------
T ss_pred             cc--ccccCCCCEEECCCCCccc-ch-hh-hcCCC-CCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-------
Confidence            11  3334444444444444431 11 11 11222 5555555554443221  3444444443322221110       


Q ss_pred             CCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCcccc
Q 041463          223 GSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMA  302 (356)
Q Consensus       223 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  302 (356)
                         ...+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|++++.  ..+.
T Consensus       280 ---~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~  350 (466)
T 1o6v_A          280 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA  350 (466)
T ss_dssp             ---CGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             ---cccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhc
Confidence               0115566777777777777765333  6677778888888887775443  56777888888888877743  3567


Q ss_pred             CcCCCCEEEcccCcccccCCCCcccCcCCCccccccC
Q 041463          303 SLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN  339 (356)
Q Consensus       303 ~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~  339 (356)
                      .+++|+.|++++|++++..| ...++.|+.++ +.+|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~-l~~n  385 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP-LANLTRITQLG-LNDQ  385 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG-GTTCTTCCEEE-CCCE
T ss_pred             cCCCCCEEeCCCCccCccch-hhcCCCCCEEe-ccCC
Confidence            77888888888888877776 67777777766 4444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=4.8e-30  Score=230.29  Aligned_cols=286  Identities=24%  Similarity=0.260  Sum_probs=230.7

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      +++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+.. +|   +..|..+++
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~---~~~~~~l~~  142 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LP---RGIFHNTPK  142 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC---TTTTTTCTT
T ss_pred             cccCcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CC---HHHhcCCCC
Confidence            6889999999999997777778777 899999999999998877776 69999999999999873 22   234688999


Q ss_pred             ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  160 (356)
                      |++|++++|.+.+..+..+..+++|++|++++|.+...   .+..+++|++|++++|.++.     +...++|+.|++++
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~  214 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH  214 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCS
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCC
Confidence            99999999999977788899999999999999998854   24567899999999998863     23446899999999


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      |.+... +...    ...++.|++++|.+.+.  ..+..+++|+.+........        ...+..+..+++|+.|++
T Consensus       215 n~l~~~-~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          215 NSINVV-RGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE--------KIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             SCCCEE-ECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--------EEESGGGTTCSSCCEEEC
T ss_pred             Ceeeec-cccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC--------CcChhHccccccCCEEEC
Confidence            988733 3222    23489999999988643  46667777776554443221        112455778899999999


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE  320 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  320 (356)
                      ++|.+.+ .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++. +  +..+++|+.|++++|++.+.
T Consensus       280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            9999985 4555677899999999999998 6777788899999999999999844 3  67789999999999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.1e-29  Score=218.58  Aligned_cols=268  Identities=17%  Similarity=0.241  Sum_probs=218.6

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|.++ .+    |..+.  ++|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l----~~~~~--~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL----PEKMP--KTL  123 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BC----CSSCC--TTC
T ss_pred             CCCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-cc----Chhhc--ccc
Confidence            468999999999997766678777 899999999999998777777 6899999999999987 33    33332  799


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccc--cccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG--SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG  159 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  159 (356)
                      ++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++ .+|..+.  ++|+.|+++
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~  200 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLD  200 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECT
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECC
Confidence            999999999997777789999999999999999864  56778889999999999999998 4555443  799999999


Q ss_pred             CCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEe
Q 041463          160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD  239 (356)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  239 (356)
                      +|.+.+..+..+.. ++. |+.|++++|.+.+..+..                                +..+++|+.|+
T Consensus       201 ~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~l~~~~~~~--------------------------------~~~l~~L~~L~  246 (330)
T 1xku_A          201 GNKITKVDAASLKG-LNN-LAKLGLSFNSISAVDNGS--------------------------------LANTPHLRELH  246 (330)
T ss_dssp             TSCCCEECTGGGTT-CTT-CCEEECCSSCCCEECTTT--------------------------------GGGSTTCCEEE
T ss_pred             CCcCCccCHHHhcC-CCC-CCEEECCCCcCceeChhh--------------------------------ccCCCCCCEEE
Confidence            99998655555543 444 999999999887554433                                34556677799


Q ss_pred             ecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCC------CCCccEEEccCCcccc--cCCccccCcCCCCEEE
Q 041463          240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN------FEWLETLDLSKNKLSG--SIPPSMASLIFMNHLN  311 (356)
Q Consensus       240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~  311 (356)
                      +++|.+. ..|..+..+++|++|++++|.+++..+..|..      .++++.|++++|++..  ..|..|..++.++.++
T Consensus       247 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~  325 (330)
T 1xku_A          247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  325 (330)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             CCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence            9999998 67778889999999999999999666666643      3789999999999863  5677888899999999


Q ss_pred             cccCc
Q 041463          312 LSYNN  316 (356)
Q Consensus       312 l~~n~  316 (356)
                      +++|+
T Consensus       326 L~~N~  330 (330)
T 1xku_A          326 LGNYK  330 (330)
T ss_dssp             C----
T ss_pred             ecccC
Confidence            99885

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-29  Score=239.09  Aligned_cols=310  Identities=24%  Similarity=0.259  Sum_probs=244.0

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      +++|++|++++|.+++..+..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+++ +|   +..|..+++
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~---~~~~~~l~~  148 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LP---RGIFHNTPK  148 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC---TTTTTTCTT
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CC---HHHhccCCC
Confidence            6789999999999998777778877 899999999999998887776 69999999999999883 22   234688999


Q ss_pred             ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463           81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  160 (356)
                      |++|++++|.+.+..+..|..+++|++|++++|.+....   +..+++|+.|++++|.+++     +...++|+.|++++
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~  220 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH  220 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCS
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccC
Confidence            999999999999888888999999999999999988543   4567899999999998863     24456899999999


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      |.+.. .+..+    +..++.|++++|.+.+  +..+..++.|+.+........        ...+..+..+++|+.|+|
T Consensus       221 n~l~~-~~~~~----~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L  285 (597)
T 3oja_B          221 NSINV-VRGPV----NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE--------KIMYHPFVKMQRLERLYI  285 (597)
T ss_dssp             SCCCE-EECSC----CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC--------EEESGGGTTCSSCCEEEC
T ss_pred             Ccccc-ccccc----CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC--------CCCHHHhcCccCCCEEEC
Confidence            98863 22222    2348999999998875  356777777777555443221        113456778899999999


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE  320 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  320 (356)
                      ++|.+.+ ++..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++. +  +..+++|+.|++++|++.+.
T Consensus       286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            9999985 4566677899999999999998 7888888999999999999999854 3  66789999999999999865


Q ss_pred             CCCCcccCcCCCccccccCccccCCC
Q 041463          321 IPNTNQFQTLNDPSIYEGNLALCGDP  346 (356)
Q Consensus       321 ~~~~~~l~~l~~~~~~~~~~~~~~~~  346 (356)
                      ... ..+..+.... +.++...|+.+
T Consensus       361 ~~~-~~~~~~~~~~-~~~~~~~C~~~  384 (597)
T 3oja_B          361 SLR-ALFRNVARPA-VDDADQHCKID  384 (597)
T ss_dssp             HHH-HHTTTCCTTT-BCCCCCCCCTT
T ss_pred             hHH-HHHHHHhhhc-cccccccCCcc
Confidence            321 2333333333 45566667654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=1e-28  Score=226.73  Aligned_cols=295  Identities=25%  Similarity=0.317  Sum_probs=186.3

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      ++++++|++.++.+.. ++. +..+ ++|++|++++|.+++..+ ..++++|++|++++|.+.+     ++. +..+++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~~-~~~l-~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~-~~~l~~L  114 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-IDG-VEYL-NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-----ITP-LANLTNL  114 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CTT-GGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----CGG-GTTCTTC
T ss_pred             hccccEEecCCCCCcc-Ccc-hhhh-cCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc-----Chh-hcCCCCC
Confidence            4689999999999974 553 6665 899999999999986554 5579999999999999874     233 8889999


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      ++|++++|.+.+..+  +..+++|++|++++|.+... + .+..+++|++|.+.+ .+.+.  ..+..+++|+.|++++|
T Consensus       115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSN  187 (466)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCC
Confidence            999999999985543  88999999999999998743 2 355555666665542 22211  12445555555555555


Q ss_pred             cccccCCchhhcccccceeEEEcccCcccccCC--------------------CCcCCCCCCcccCCCCCccCCCeeeee
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIP--------------------PRVGNLSDMKVEPPKSVQHEGRLRVVT  221 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--------------------~~~~~l~~L~~~~~~~~~~~~~~~~~~  221 (356)
                      .+.+ .+ .+ ..++. |+.|++++|.+.+..+                    ..+..+++|+.+.........      
T Consensus       188 ~l~~-~~-~l-~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------  257 (466)
T 1o6v_A          188 KVSD-IS-VL-AKLTN-LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN------  257 (466)
T ss_dssp             CCCC-CG-GG-GGCTT-CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------
T ss_pred             cCCC-Ch-hh-ccCCC-CCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc------
Confidence            5432 11 11 11222 5555555554443222                    123333333332222211110      


Q ss_pred             cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccc
Q 041463          222 KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM  301 (356)
Q Consensus       222 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  301 (356)
                          ...+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++++..+  +
T Consensus       258 ----~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~  327 (466)
T 1o6v_A          258 ----LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V  327 (466)
T ss_dssp             ----CGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred             ----chhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence                0114556667777777776664332  5566777777777777663322  5667777777777777765444  5


Q ss_pred             cCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463          302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       302 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      ..+++|++|++++|++++. +.+..++.|+.++
T Consensus       328 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~  359 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDV-SSLANLTNINWLS  359 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEE
T ss_pred             ccCccCCEeECCCCccCCc-hhhccCCCCCEEe
Confidence            6677777777777777665 4556666666666

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.3e-29  Score=219.20  Aligned_cols=287  Identities=20%  Similarity=0.220  Sum_probs=233.5

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ++++++++++.++ .+|..+.   +++++|++++|.+++..+..+ ++++|++|++++|.+++.    .+..+..+++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~  105 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI----HEKAFSPLRKLQ  105 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGSTTCTTCC
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc----CHhHhhCcCCCC
Confidence            6899999999997 5666553   789999999999997777666 699999999999998753    357789999999


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccc--ccCccccCCCCCcEEEecC
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG--ELPLSLKNCTFMESLDLGD  160 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~  160 (356)
                      +|++++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|++|++++|.++.  ..+..+..+ +|+.|++++
T Consensus       106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            9999999998 4454443  899999999999997777778999999999999999863  556677777 999999999


Q ss_pred             CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      |.+. .+|..+.    ..++.|++++|.+.+..+..+..+++|+.+........        ......+..+++|+.|++
T Consensus       182 n~l~-~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          182 AKLT-GIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--------MIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             SBCS-SCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC--------CCCTTGGGGCTTCCEEEC
T ss_pred             CCCC-ccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC--------cCChhHhhCCCCCCEEEC
Confidence            9988 4555443    34999999999998777788888888887655543222        123345778999999999


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCC------CCCccEEEccCCccc--ccCCccccCcCCCCEEEc
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN------FEWLETLDLSKNKLS--GSIPPSMASLIFMNHLNL  312 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l  312 (356)
                      ++|.+. .+|..+..+++|++|++++|.+++..+..|..      .++|+.|++++|++.  +..+..|..+++|+.+++
T Consensus       249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred             CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence            999998 67778999999999999999999666666654      467999999999987  567788999999999999


Q ss_pred             ccCc
Q 041463          313 SYNN  316 (356)
Q Consensus       313 ~~n~  316 (356)
                      ++|+
T Consensus       328 ~~n~  331 (332)
T 2ft3_A          328 GNYK  331 (332)
T ss_dssp             ----
T ss_pred             cccc
Confidence            9885

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=6.8e-29  Score=226.21  Aligned_cols=252  Identities=24%  Similarity=0.272  Sum_probs=167.2

Q ss_pred             CCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcE
Q 041463           52 FPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRF  131 (356)
Q Consensus        52 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  131 (356)
                      ..+.++.++..++     .+|..+.  ++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++
T Consensus        44 ~~~~v~c~~~~l~-----~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           44 QFSKVICVRKNLR-----EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             TSCEEECCSCCCS-----SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred             CCCEEEeCCCCcC-----cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence            3456666666665     2333332  56777777777777666667777777777777777777666667777777777


Q ss_pred             EEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCC
Q 041463          132 LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSV  211 (356)
Q Consensus       132 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~  211 (356)
                      |++++|.++...+..+..+++|+.|++++|.+. .++......++. |+.|+++++...+.++.                
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~----------------  178 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPS-LRRLDLGELKRLSYISE----------------  178 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTT-CCEEECCCCTTCCEECT----------------
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcc-cCEeCCCCCCCcceeCc----------------
Confidence            777777777544456777777777777777776 333333333443 77777776432212111                


Q ss_pred             ccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCC
Q 041463          212 QHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN  291 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n  291 (356)
                                     ..+..+++|+.|++++|.+.. .| .+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus       179 ---------------~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          179 ---------------GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             ---------------TTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ---------------chhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence                           123445556667888877763 33 3666777888888888877666777777888888888888


Q ss_pred             cccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463          292 KLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       292 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      ++++..+..|.++++|++|+|++|++++.++.. ..++.|+.++       +.+|||.|||+
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-------L~~Np~~CdC~  296 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH-------LHHNPWNCNCD  296 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE-------CCSSCEECSST
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE-------cCCCCccCCCC
Confidence            887777777777888888888888887666655 4555555443       45677888885

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=7.7e-29  Score=226.66  Aligned_cols=252  Identities=23%  Similarity=0.273  Sum_probs=174.4

Q ss_pred             CcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 041463           53 PATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL  132 (356)
Q Consensus        53 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  132 (356)
                      ...++.++..++     .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|
T Consensus        56 ~~~v~c~~~~l~-----~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           56 FSKVVCTRRGLS-----EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SCEEECCSSCCS-----SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CcEEEECCCCcC-----ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence            456777766665     2333332  577788888888776667777788888888888888776666777778888888


Q ss_pred             EeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCc
Q 041463          133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ  212 (356)
Q Consensus       133 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~  212 (356)
                      ++++|.++...+..+..+++|+.|++++|.+. .++......++. |+.|+++++...+.++.                 
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~-----------------  189 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS-LMRLDLGELKKLEYISE-----------------  189 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTT-CCEEECCCCTTCCEECT-----------------
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCc-ccEEeCCCCCCccccCh-----------------
Confidence            88888877555555777788888888888776 344333333444 77888776432212111                 


Q ss_pred             cCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCc
Q 041463          213 HEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK  292 (356)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~  292 (356)
                                    ..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+..+..|..+++|++|++++|+
T Consensus       190 --------------~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          190 --------------GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             --------------TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             --------------hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence                          1234455666788888887743 3 36667788888888888876667778888888888888888


Q ss_pred             ccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463          293 LSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       293 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~  353 (356)
                      +++..+..|.++++|+.|+|++|++++.++.. ..++.|+.++       +.+|||.|||+-
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-------L~~Np~~CdC~~  308 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH-------LHHNPWNCDCDI  308 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE-------CCSSCEECSTTT
T ss_pred             CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE-------ccCCCcCCCCCc
Confidence            88777777888888888888888888766655 4555555443       456788888863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-28  Score=214.27  Aligned_cols=275  Identities=23%  Similarity=0.277  Sum_probs=208.5

Q ss_pred             CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc--ccccccCCCCCcE
Q 041463           30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE--IPLLFSNSSFLYI  107 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~  107 (356)
                      -+.++..++.++. +|..+ .++|++|++++|.++. +|   +..|..+++|++|++++|.+...  .+..+..+++|++
T Consensus         9 ~~~l~c~~~~l~~-ip~~~-~~~l~~L~L~~n~l~~-i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            9 GTEIRCNSKGLTS-VPTGI-PSSATRLELESNKLQS-LP---HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TTEEECCSSCCSS-CCSCC-CTTCCEEECCSSCCCC-CC---TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CCEEEcCCCCccc-CCCCC-CCCCCEEECCCCccCc-cC---HhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            4578888888774 34322 3689999999998873 22   23478899999999999988733  2566778899999


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEccc
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSH  186 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~  186 (356)
                      |++++|.+. ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+.. ++. ++.|++++
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~-L~~L~l~~  159 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSS-LEVLKMAG  159 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTT-CCEEECTT
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcC-CCEEECCC
Confidence            999999988 456668889999999999999985444 57888999999999999887555554433 343 99999999


Q ss_pred             Ccccc-cCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463          187 NDLSG-FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS  265 (356)
Q Consensus       187 ~~l~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~  265 (356)
                      |.+.+ ..|..+                                ..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus       160 n~l~~~~~~~~~--------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          160 NSFQENFLPDIF--------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CEEGGGEECSCC--------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccccccchhHH--------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            98764 334333                                345567779999999998778888899999999999


Q ss_pred             CCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcC-CCCEEEcccCcccccCCCC---cccCcCCCccccccCcc
Q 041463          266 HNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI-FMNHLNLSYNNLSGEIPNT---NQFQTLNDPSIYEGNLA  341 (356)
Q Consensus       266 ~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~---~~l~~l~~~~~~~~~~~  341 (356)
                      +|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++.+..+..   ..+...+... ...+..
T Consensus       208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~-~~~~~~  286 (306)
T 2z66_A          208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL-VEVERM  286 (306)
T ss_dssp             TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB-SCGGGC
T ss_pred             CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh-cccccc
Confidence            9999866666788899999999999999988888888885 8999999999998653321   3343444333 333445


Q ss_pred             ccCCC
Q 041463          342 LCGDP  346 (356)
Q Consensus       342 ~~~~~  346 (356)
                      .|..|
T Consensus       287 ~C~~p  291 (306)
T 2z66_A          287 ECATP  291 (306)
T ss_dssp             BEEES
T ss_pred             ccCCc
Confidence            55444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=5.7e-29  Score=233.26  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=133.1

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ...+.+.+++.++ .+|..+.   ++|++|++++|.+++..+..+ ++++|++|++++|.+.+.    .+..|..+++|+
T Consensus         6 ~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~   77 (549)
T 2z81_A            6 ASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI----EGDAFYSLGSLE   77 (549)
T ss_dssp             TTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE----CTTTTTTCTTCC
T ss_pred             CCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc----ChhhccccccCC
Confidence            3345677788887 5666553   689999999999998777666 699999999999999853    236788999999


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecC
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGD  160 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~  160 (356)
                      +|++++|.+.+..+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            999999999977777799999999999999999853 45678999999999999998443444 6789999999999999


Q ss_pred             CcccccCCchhh
Q 041463          161 NNLSGNIPAWIG  172 (356)
Q Consensus       161 ~~l~~~~~~~~~  172 (356)
                      |.+.+..+..+.
T Consensus       158 n~l~~~~~~~l~  169 (549)
T 2z81_A          158 LSLRNYQSQSLK  169 (549)
T ss_dssp             TTCCEECTTTTT
T ss_pred             CcccccChhhhh
Confidence            998866665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=9.9e-28  Score=228.61  Aligned_cols=307  Identities=23%  Similarity=0.209  Sum_probs=209.6

Q ss_pred             CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcc
Q 041463            1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLK   79 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~   79 (356)
                      ++++|++|+|++|.|++..+.+|.++ ++|++|+|++|.+++..+..+ ++++|++|++++|.+++.    .+..|..++
T Consensus        74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l----~~~~~~~L~  148 (635)
T 4g8a_A           74 SFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL----ENFPIGHLK  148 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS----TTCCCTTCT
T ss_pred             CCCCCCEEECCCCcCCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC----ChhhhhcCc
Confidence            47889999999999987666677777 899999999999987666666 589999999999988742    224578888


Q ss_pred             cccEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccc-----------------------------------
Q 041463           80 QLITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESI-----------------------------------  123 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------------------------  123 (356)
                      +|++|++++|.+... .|..+..+++|++|++++|.+....+..+                                   
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~  228 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK  228 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence            999999999888653 46777888888888888876542111110                                   


Q ss_pred             --------------------------------------------------------------------------------
Q 041463          124 --------------------------------------------------------------------------------  123 (356)
Q Consensus       124 --------------------------------------------------------------------------------  123 (356)
                                                                                                      
T Consensus       229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  308 (635)
T 4g8a_A          229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV  308 (635)
T ss_dssp             EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred             hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence                                                                                            


Q ss_pred             ----------------cCCCCCcEEEeecccccc---------------------------------------------c
Q 041463          124 ----------------GSLRTLRFLVLRNNYLSG---------------------------------------------E  142 (356)
Q Consensus       124 ----------------~~l~~L~~L~l~~~~l~~---------------------------------------------~  142 (356)
                                      .....++.|.+.++.+..                                             .
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  388 (635)
T 4g8a_A          309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC  388 (635)
T ss_dssp             SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred             ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence                            001122333333322210                                             0


Q ss_pred             cCccccCCCCCcEEEecCCcccc-----------------------cCCchhhcccccceeEEEcccCcccccCCCCcCC
Q 041463          143 LPLSLKNCTFMESLDLGDNNLSG-----------------------NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGN  199 (356)
Q Consensus       143 ~~~~l~~l~~L~~L~l~~~~l~~-----------------------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  199 (356)
                      .+..+..+.+|+.+++..+....                       ..+......+.. ++.++++.|.+....+..+..
T Consensus       389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~-l~~l~ls~n~l~~~~~~~~~~  467 (635)
T 4g8a_A          389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNG  467 (635)
T ss_dssp             CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT-CCEEECTTSCCEECCTTTTTT
T ss_pred             cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc-ccccccccccccccccccccc
Confidence            11112233455566665554331                       111111121222 455555555554444444444


Q ss_pred             CCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCC
Q 041463          200 LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN  279 (356)
Q Consensus       200 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  279 (356)
                      ++.++.+........       ....+..+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|..
T Consensus       468 ~~~L~~L~Ls~N~~~-------~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  540 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQ-------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  540 (635)
T ss_dssp             CTTCCEEECTTCEEG-------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred             chhhhhhhhhhcccc-------cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence            444444322221111       1123456788899999999999999888999999999999999999999777888999


Q ss_pred             CCCccEEEccCCcccccCCccccCc-CCCCEEEcccCccccc
Q 041463          280 FEWLETLDLSKNKLSGSIPPSMASL-IFMNHLNLSYNNLSGE  320 (356)
Q Consensus       280 ~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~~~~~  320 (356)
                      +++|++|++++|++++..|..+..+ ++|+.|++++|++...
T Consensus       541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999999998889999988 6899999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.5e-28  Score=216.17  Aligned_cols=275  Identities=18%  Similarity=0.173  Sum_probs=142.6

Q ss_pred             EEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEec
Q 041463            8 LVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVI   86 (356)
Q Consensus         8 L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l   86 (356)
                      .+++++.++ .+|..+.   ++|++|++++|.+++..+..+ ++++|++|++++|.+++.    .+..|..+++|++|++
T Consensus        36 c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           36 CKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI----EEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             EECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEC
T ss_pred             eeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc----CHhhcCCCCCCCEEEC
Confidence            444444444 2343322   355555555555554433333 355555555555555431    1234455555555555


Q ss_pred             ccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeecc-ccccccCccccCCCCCcEEEecCCccc
Q 041463           87 SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNN-YLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus        87 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      ++|.+++..+..+..+++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            5555553333335555555555555555553322 24455555555555555 244333444555555555555555554


Q ss_pred             ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc
Q 041463          165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  244 (356)
                      +..+..+.. ++. ++.|++++|.+...                                ....+..+++|+.|++++|.
T Consensus       188 ~~~~~~l~~-l~~-L~~L~l~~n~l~~~--------------------------------~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          188 SYEPKSLKS-IQN-VSHLILHMKQHILL--------------------------------LEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EECTTTTTT-CSE-EEEEEEECSCSTTH--------------------------------HHHHHHHTTTEEEEEEESCB
T ss_pred             ccCHHHHhc-ccc-CCeecCCCCccccc--------------------------------hhhhhhhcccccEEECCCCc
Confidence            333333322 222 55555555543211                                01122345566667777777


Q ss_pred             ccccCchhh---hcccccCeEEccCCcCcC----CCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463          245 LSAEIPAEL---TSLVHLGTLNLSHNHLVG----KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL  317 (356)
Q Consensus       245 l~~~~~~~~---~~~~~L~~L~L~~n~i~~----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  317 (356)
                      +.+..+..+   .....++.++++++.+.+    .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus       234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            665433222   223456666666666553    2455566677777777777777743334456777777777777777


Q ss_pred             cccCCCC
Q 041463          318 SGEIPNT  324 (356)
Q Consensus       318 ~~~~~~~  324 (356)
                      .+..|.+
T Consensus       314 ~~~~~~l  320 (353)
T 2z80_A          314 DCSCPRI  320 (353)
T ss_dssp             CCCHHHH
T ss_pred             cCcCCCc
Confidence            7665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.5e-28  Score=216.18  Aligned_cols=278  Identities=18%  Similarity=0.174  Sum_probs=213.8

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      +.....+.+++.++. +|..+ .++|++|++++|.+++. +   +..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus        31 ~~~~~c~~~~~~l~~-iP~~~-~~~L~~L~l~~n~i~~~-~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           31 DRNGICKGSSGSLNS-IPSGL-TEAVKSLDLSNNRITYI-S---NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             CTTSEEECCSTTCSS-CCTTC-CTTCCEEECTTSCCCEE-C---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCeEeeCCCCCccc-ccccc-cccCcEEECCCCcCccc-C---HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            666778888888884 44433 25899999999998742 2   246888999999999999998777788999999999


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCc-ccccCCchhhcccccceeEEEcc
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNN-LSGNIPAWIGASMPGLLHILDLS  185 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~  185 (356)
                      |++++|.+....+..+..+++|++|++++|.++.... ..+..+++|+.|++++|. +.+..+..+. .++. ++.|+++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~-L~~L~l~  182 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTF-LEELEID  182 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCE-EEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCC-CCEEECC
Confidence            9999999996666668899999999999999984333 368899999999999984 5533334443 3444 9999999


Q ss_pred             cCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463          186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS  265 (356)
Q Consensus       186 ~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~  265 (356)
                      +|.+.+..+..+.                                .+++|+.|++++|.+.......+..+++|++|+++
T Consensus       183 ~n~l~~~~~~~l~--------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          183 ASDLQSYEPKSLK--------------------------------SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             ETTCCEECTTTTT--------------------------------TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred             CCCcCccCHHHHh--------------------------------ccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence            9988765555444                                44556779999999875444456668999999999


Q ss_pred             CCcCcCCCCcCc---CCCCCccEEEccCCcccc----cCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccc
Q 041463          266 HNHLVGKIPEEI---GNFEWLETLDLSKNKLSG----SIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYE  337 (356)
Q Consensus       266 ~n~i~~~~~~~~---~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~  337 (356)
                      +|.+++..+..+   ...+.++.++++++.+.+    .+|..+..+++|++|++++|+++..++.. ..++.|+.++   
T Consensus       231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~---  307 (353)
T 2z80_A          231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW---  307 (353)
T ss_dssp             SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---
T ss_pred             CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE---
Confidence            999986544443   346778899999988875    35677888999999999999999666654 6777777665   


Q ss_pred             cCccccCCCCCCCCC
Q 041463          338 GNLALCGDPLPKKCP  352 (356)
Q Consensus       338 ~~~~~~~~~~~~~c~  352 (356)
                          +.+|||.|+|+
T Consensus       308 ----L~~N~~~~~~~  318 (353)
T 2z80_A          308 ----LHTNPWDCSCP  318 (353)
T ss_dssp             ----CCSSCBCCCHH
T ss_pred             ----eeCCCccCcCC
Confidence                45678888885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=8.6e-28  Score=208.52  Aligned_cols=278  Identities=19%  Similarity=0.229  Sum_probs=207.7

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL   84 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L   84 (356)
                      +.++.+++.++ .+|..+.   +++++|++++|.++...+..+ ++++|++|++++|.+....  ..+..+..+++|++|
T Consensus        10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE--EEEHHHHSCSCCCEE
T ss_pred             CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc--CcccccccccccCEE
Confidence            46778888887 4565443   689999999999886555555 6899999999999876311  113455568899999


Q ss_pred             ecccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      ++++|.+. ..+..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             ECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             ECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            99999887 456668889999999999998885554 5678889999999999998877777888889999999999988


Q ss_pred             cc-cCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecC
Q 041463          164 SG-NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS  242 (356)
Q Consensus       164 ~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  242 (356)
                      .+ ..+..+.. ++. |+.|++++|.+.+..+..+.                                .+++|+.|++++
T Consensus       163 ~~~~~~~~~~~-l~~-L~~L~Ls~n~l~~~~~~~~~--------------------------------~l~~L~~L~L~~  208 (306)
T 2z66_A          163 QENFLPDIFTE-LRN-LTFLDLSQCQLEQLSPTAFN--------------------------------SLSSLQVLNMSH  208 (306)
T ss_dssp             GGGEECSCCTT-CTT-CCEEECTTSCCCEECTTTTT--------------------------------TCTTCCEEECTT
T ss_pred             ccccchhHHhh-CcC-CCEEECCCCCcCCcCHHHhc--------------------------------CCCCCCEEECCC
Confidence            75 34544433 333 89999999988765454443                                344566699999


Q ss_pred             CcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCC-CccEEEccCCcccccC--CccccCcCCCCEEEcccCcccc
Q 041463          243 TNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE-WLETLDLSKNKLSGSI--PPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       243 ~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~-~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|+++...  ......+...+.+.+..+.+..
T Consensus       209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C  288 (306)
T 2z66_A          209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC  288 (306)
T ss_dssp             SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBE
T ss_pred             CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccccc
Confidence            999877777788889999999999999877888888884 8999999999887432  1122334455556666667776


Q ss_pred             cCCCC
Q 041463          320 EIPNT  324 (356)
Q Consensus       320 ~~~~~  324 (356)
                      ..|..
T Consensus       289 ~~p~~  293 (306)
T 2z66_A          289 ATPSD  293 (306)
T ss_dssp             EESGG
T ss_pred             CCchh
Confidence            65554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=3.3e-27  Score=215.28  Aligned_cols=276  Identities=16%  Similarity=0.142  Sum_probs=174.5

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++|++|++++|.+++. | .+..+ ++|++|++++|.+++. + +..+++|++|++++|.+++     +  .+..+++|
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l-~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~-----~--~~~~l~~L  108 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKL-TGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTN-----L--DVTPLTKL  108 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGC-TTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSC-----C--CCTTCTTC
T ss_pred             cCCCCEEEccCCCcccC-h-hhccc-CCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCce-----e--ecCCCCcC
Confidence            57899999999999864 5 56666 8999999999998864 2 4468899999999998874     2  26778889


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      ++|++++|.+.+. +  +..+++|++|++++|.+...   .+..+++|++|++++|...+.+  .+..+++|+.|++++|
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            9999999988753 3  77888888888888888753   2566777777777777443233  3556667777777777


Q ss_pred             cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS  241 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  241 (356)
                      .+.+ ++  + ..++. ++.|++++|.+.+.   .+..+++|+.+........+ +          .+..+++|+.|+++
T Consensus       181 ~l~~-l~--l-~~l~~-L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-i----------p~~~l~~L~~L~l~  241 (457)
T 3bz5_A          181 KITE-LD--V-SQNKL-LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-I----------DVTPLTQLTYFDCS  241 (457)
T ss_dssp             CCCC-CC--C-TTCTT-CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C----------CCTTCTTCSEEECC
T ss_pred             ccce-ec--c-ccCCC-CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-c----------CccccCCCCEEEee
Confidence            6653 33  1 11222 66666666665533   24444444443333222111 0          02334444444444


Q ss_pred             CCcccccCchh-----------------------------hhcccccCeEEccCCcCcCCCCc--------CcCCCCCcc
Q 041463          242 STNLSAEIPAE-----------------------------LTSLVHLGTLNLSHNHLVGKIPE--------EIGNFEWLE  284 (356)
Q Consensus       242 ~~~l~~~~~~~-----------------------------~~~~~~L~~L~L~~n~i~~~~~~--------~~~~~~~L~  284 (356)
                      +|.+.+..+..                             +..+++|++|++++|...+.+|.        .++.+++|+
T Consensus       242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~  321 (457)
T 3bz5_A          242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV  321 (457)
T ss_dssp             SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred             CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence            44444322211                             23345566666666653322221        245567777


Q ss_pred             EEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          285 TLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       285 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +|++++|++++. +  +..+++|+.|++++|++++
T Consensus       322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             EEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence            777777777753 2  6677777777777777775

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=6.9e-27  Score=213.70  Aligned_cols=250  Identities=20%  Similarity=0.217  Sum_probs=206.6

Q ss_pred             CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      ..+.++..+..++. +|..+ .+++++|++++|.+.+.    .+..|..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~-~~~l~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGI-PSNTRYLNLMENNIQMI----QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcEEEECCCCcCc-cCCCC-CCCccEEECcCCcCceE----CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence            35677777777763 34332 36899999999998753    24678889999999999999987777889999999999


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND  188 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~  188 (356)
                      ++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|...+.++......++. |+.|++++|.
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~  207 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCN  207 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-CCEEECTTSC
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-CCEEECCCCc
Confidence            999999997777778899999999999999986666678899999999999865433555544444554 9999999998


Q ss_pred             ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463          189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH  268 (356)
Q Consensus       189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~  268 (356)
                      +.+. + .                                +..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus       208 l~~~-~-~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          208 IKDM-P-N--------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             CSSC-C-C--------------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             cccc-c-c--------------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence            7632 2 1                                2345678889999999998888999999999999999999


Q ss_pred             CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            998888899999999999999999997778888999999999999999764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.5e-27  Score=212.35  Aligned_cols=250  Identities=23%  Similarity=0.265  Sum_probs=206.1

Q ss_pred             CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      ..+.++..+..++. +|..+ .++++.|++++|.+....    +..|..+++|++|++++|.+....+..|..+++|++|
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~-~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGI-STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCC-CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCCEEEeCCCCcCc-CCCCC-CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            45677777777773 44333 378999999999887532    3678889999999999999987777889999999999


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND  188 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~  188 (356)
                      ++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.++......++. |+.|++++|.
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~  196 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCN  196 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-CCEEECTTSC
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-cCeecCCCCc
Confidence            999999997777788999999999999999986666788899999999999865443555544444554 9999999998


Q ss_pred             ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463          189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH  268 (356)
Q Consensus       189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~  268 (356)
                      +.. +| .                                +..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus       197 l~~-~~-~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          197 LRE-IP-N--------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             CSS-CC-C--------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             Ccc-cc-c--------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence            762 22 1                                2345668889999999998888899999999999999999


Q ss_pred             CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            998888899999999999999999997788888999999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.1e-27  Score=205.18  Aligned_cols=224  Identities=25%  Similarity=0.264  Sum_probs=141.9

Q ss_pred             CCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCc
Q 041463           51 NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR  130 (356)
Q Consensus        51 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  130 (356)
                      ..++.|++++|.+.     .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|+
T Consensus        81 ~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           81 PGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            56666666666665     23445555666666666666666 55666666666777777666666 4555666666677


Q ss_pred             EEEeeccccccccCccccC---------CCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCC
Q 041463          131 FLVLRNNYLSGELPLSLKN---------CTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLS  201 (356)
Q Consensus       131 ~L~l~~~~l~~~~~~~l~~---------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~  201 (356)
                      +|++++|.+.+.+|..+..         +++|+.|++++|.+. .+|..+.. ++. |+.|++++|.+.+ ++..     
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~-L~~L~L~~N~l~~-l~~~-----  224 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQN-LKSLKIRNSPLSA-LGPA-----  224 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTT-CCEEEEESSCCCC-CCGG-----
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCC-CCEEEccCCCCCc-Cchh-----
Confidence            7777666555555554433         666666666666665 55544332 222 6666666665542 2222     


Q ss_pred             CCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCC
Q 041463          202 DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE  281 (356)
Q Consensus       202 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~  281 (356)
                                                 +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++
T Consensus       225 ---------------------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          225 ---------------------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             ---------------------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred             ---------------------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence                                       23344555577777766666666677777777777777776666777777777


Q ss_pred             CccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463          282 WLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL  317 (356)
Q Consensus       282 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  317 (356)
                      +|++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus       278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            777777777777767777777777777777765544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.3e-27  Score=203.62  Aligned_cols=225  Identities=23%  Similarity=0.186  Sum_probs=110.8

Q ss_pred             cEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEc
Q 041463           31 DELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM  110 (356)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l  110 (356)
                      ++++..++.++.. |.. ..++|++|++++|.+++.    .+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        14 ~~~~c~~~~l~~i-p~~-~~~~l~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVG-IPAASQRIFLHGNRISHV----PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSC-CTT-CCTTCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcccC-CcC-CCCCceEEEeeCCcCCcc----CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            3455555555422 221 134555566655555431    1134455555555555555555444555555555555555


Q ss_pred             ccCc-ccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcc
Q 041463          111 SNNS-LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL  189 (356)
Q Consensus       111 ~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  189 (356)
                      ++|. +....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+..                   
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~-------------------  147 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDD-------------------  147 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT-------------------
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHh-------------------
Confidence            5554 443444455555555555555555554444445555555555555555442 2211                   


Q ss_pred             cccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcC
Q 041463          190 SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL  269 (356)
Q Consensus       190 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i  269 (356)
                            .+                                ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       148 ------~~--------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          148 ------TF--------------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ------TT--------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ------Hh--------------------------------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence                  11                                2223333455555555443333444555555555555555


Q ss_pred             cCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          270 VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       270 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      .+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++..
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            54445555555555555555555554333445555555555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.8e-27  Score=201.15  Aligned_cols=151  Identities=19%  Similarity=0.141  Sum_probs=129.9

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL   84 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L   84 (356)
                      ++++.+++.++ .+|..+.   +++++|++++|.+++..+..+ .+++|++|++++|.+++.    .+..+..+++|++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQL   85 (285)
T ss_dssp             CEEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEE
T ss_pred             eEEEcCcCCcc-cCCcCCC---CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCccCCCEE
Confidence            57888888887 4565442   789999999999997776666 689999999999998753    24678889999999


Q ss_pred             eccccc-ccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           85 VISNNN-LSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        85 ~l~~~~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      ++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            999997 7766688899999999999999999977788899999999999999999866666688899999999999887


Q ss_pred             c
Q 041463          164 S  164 (356)
Q Consensus       164 ~  164 (356)
                      .
T Consensus       166 ~  166 (285)
T 1ozn_A          166 S  166 (285)
T ss_dssp             C
T ss_pred             c
Confidence            6

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.5e-26  Score=199.88  Aligned_cols=225  Identities=20%  Similarity=0.236  Sum_probs=189.0

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      +++++|++++|.++...+....+++|++|++++|.+. .    +|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~----lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-E----LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-C----CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-c----hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            6899999999998844444446899999999999887 3    4567888999999999999988 67888999999999


Q ss_pred             EEcccCcccccccccccC---------CCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccc
Q 041463          108 LDMSNNSLSGSIPESIGS---------LRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL  178 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  178 (356)
                      |++++|.+.+..|..+..         +++|++|++++|.++ .+|..+..+++|+.|++++|.+. .++..+.. ++. 
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-l~~-  230 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPK-  230 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-CTT-
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-CCC-
Confidence            999998777677766543         899999999999998 78888999999999999999998 46655443 444 


Q ss_pred             eeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccc
Q 041463          179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVH  258 (356)
Q Consensus       179 L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~  258 (356)
                      |+.|++++|.+.+.+|..+..                                +++|+.|++++|.+.+..|..+..+++
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~--------------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~  278 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGG--------------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQ  278 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTC--------------------------------CCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred             CCEEECcCCcchhhhHHHhcC--------------------------------CCCCCEEECCCCCchhhcchhhhcCCC
Confidence            999999999887666655544                                445666999999988889999999999


Q ss_pred             cCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463          259 LGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS  294 (356)
Q Consensus       259 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~  294 (356)
                      |++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus       279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            999999999998899999999999999999987665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=1.2e-25  Score=204.96  Aligned_cols=281  Identities=17%  Similarity=0.158  Sum_probs=172.2

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +++|++|++++|.+++. +  +..+ ++|++|++++|.+++.  +..++++|++|++++|.+++     ++  +..+++|
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l-~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l~~-----l~--~~~l~~L  129 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQN-TNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTK-----LD--VSQNPLL  129 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTC-TTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCCSC-----CC--CTTCTTC
T ss_pred             cCCCCEEEccCCcCCeE-c--cccC-CCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcCCe-----ec--CCCCCcC
Confidence            56788888888888753 3  5555 7788888888877754  24457788888888877763     22  5666777


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccC----------------------cccccccccccCCCCCcEEEeecccc
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNN----------------------SLSGSIPESIGSLRTLRFLVLRNNYL  139 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~----------------------~~~~~~~~~~~~l~~L~~L~l~~~~l  139 (356)
                      ++|++++|.+++. +  +..+++|++|++++|                      .+.. .+  +..+++|++|++++|.+
T Consensus       130 ~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          130 TYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             CEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC
Confidence            7777777776642 1  444555555555555                      4442 11  34445555555555555


Q ss_pred             ccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCC-------cccCCCCCc
Q 041463          140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDM-------KVEPPKSVQ  212 (356)
Q Consensus       140 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L-------~~~~~~~~~  212 (356)
                      ++.   .+..+++|+.|++++|.+.+ +|  + ..++. ++.|++++|.+.+..+..+..++.+       +........
T Consensus       204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~-~~l~~-L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--V-TPLTQ-LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             SCC---CCTTCTTCSEEECCSSCCSC-CC--C-TTCTT-CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred             Cee---ccccCCCCCEEECcCCcccc-cC--c-cccCC-CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence            422   24555566666666666553 33  1 11222 6666666666654433333333311       111111111


Q ss_pred             cCCCeeeeecCCccccccccccccEEeecCCcccccCch--------hhhcccccCeEEccCCcCcCCCCcCcCCCCCcc
Q 041463          213 HEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPA--------ELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE  284 (356)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--------~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~  284 (356)
                      ..+          ...+..+++|+.|++++|...+..|.        .+..+++|++|++++|.+++ +  .++.+++|+
T Consensus       276 ~~~----------~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~  342 (457)
T 3bz5_A          276 QLI----------YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLK  342 (457)
T ss_dssp             TCC----------EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCS
T ss_pred             cCC----------cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCc
Confidence            111          11235678999999999976544332        25567899999999999986 3  388999999


Q ss_pred             EEEccCCcccccCCcccc-------------CcCCCCEEEcccCcccccCCCC
Q 041463          285 TLDLSKNKLSGSIPPSMA-------------SLIFMNHLNLSYNNLSGEIPNT  324 (356)
Q Consensus       285 ~L~L~~n~i~~~~~~~~~-------------~l~~L~~L~l~~n~~~~~~~~~  324 (356)
                      .|++++|++++. +. +.             .+..|..+++++|+++|.+|..
T Consensus       343 ~L~l~~N~l~~l-~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          343 SLSCVNAHIQDF-SS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             EEECCSSCCCBC-TT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred             EEECCCCCCCCc-cc-cccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence            999999999852 21 11             2356788899999999998865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=9.8e-28  Score=209.01  Aligned_cols=269  Identities=22%  Similarity=0.176  Sum_probs=206.5

Q ss_pred             ceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         5 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      ++..+++.+.+.... ..+...+++|++|++++|.+++..+..+ .+++|++|++++|.+++.     + .+..+++|++
T Consensus        12 l~i~~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~-~~~~l~~L~~   84 (317)
T 3o53_A           12 YKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----L-DLESLSTLRT   84 (317)
T ss_dssp             EEEESCCTTTHHHHH-HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-----E-EETTCTTCCE
T ss_pred             eeEeeccccchhhhH-HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-----h-hhhhcCCCCE
Confidence            445556666665332 3333334799999999999987665555 689999999999998742     1 2788999999


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      |++++|.+++..     ..++|++|++++|.+....+..   +++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus        85 L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           85 LDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             EECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             EECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            999999987432     3489999999999998655443   57899999999999876677888899999999999998


Q ss_pred             cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463          164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST  243 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  243 (356)
                      .+..+..+...++. ++.|++++|.+.+. +.                                 ...+++|+.|++++|
T Consensus       157 ~~~~~~~~~~~l~~-L~~L~L~~N~l~~~-~~---------------------------------~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          157 DTVNFAELAASSDT-LEHLNLQYNFIYDV-KG---------------------------------QVVFAKLKTLDLSSN  201 (317)
T ss_dssp             CEEEGGGGGGGTTT-CCEEECTTSCCCEE-EC---------------------------------CCCCTTCCEEECCSS
T ss_pred             CcccHHHHhhccCc-CCEEECCCCcCccc-cc---------------------------------ccccccCCEEECCCC
Confidence            86555555444444 99999999987643 11                                 112556777999999


Q ss_pred             cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc-ccCCccccCcCCCCEEEcccC-cccccC
Q 041463          244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS-GSIPPSMASLIFMNHLNLSYN-NLSGEI  321 (356)
Q Consensus       244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n-~~~~~~  321 (356)
                      .+.+.. ..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +..+.++..+++|+.++++++ .+.+..
T Consensus       202 ~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          202 KLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             CCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             cCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            998544 45888899999999999998 67778888999999999999998 667788888999999999844 566666


Q ss_pred             CCCc
Q 041463          322 PNTN  325 (356)
Q Consensus       322 ~~~~  325 (356)
                      |...
T Consensus       280 ~~~~  283 (317)
T 3o53_A          280 EEEC  283 (317)
T ss_dssp             SCCC
T ss_pred             hhcc
Confidence            5553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.1e-24  Score=198.44  Aligned_cols=277  Identities=27%  Similarity=0.391  Sum_probs=169.8

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ++|++|++++|.+++ ++.    ..++|++|++++|.+++ ++.+.++++|++|++++|.+++ +|    ..   .++|+
T Consensus       111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp----~~---~~~L~  176 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKK-LP----DL---PPSLE  176 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSC-CC----CC---CTTCC
T ss_pred             CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcc-cC----CC---ccccc
Confidence            456777777776663 222    11589999999998885 5555578899999999998873 33    22   25888


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN  162 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  162 (356)
                      +|++++|.+.+ .| .+..+++|++|++++|.+.. .|..   .++|++|++++|.++ .+| .+..+++|+.|++++|.
T Consensus       177 ~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          177 FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC
T ss_pred             EEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCc
Confidence            88888888875 44 57888888888888888774 3322   247888888888887 555 47788888888888888


Q ss_pred             ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC------Ceeeee-cCCcccccccc-cc
Q 041463          163 LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG------RLRVVT-KGSERKYFTTL-YL  234 (356)
Q Consensus       163 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~-~~  234 (356)
                      +. .++...     ..++.|++++|.+.+ +|....   +|+.+........+      .+.... .......+... ++
T Consensus       249 l~-~l~~~~-----~~L~~L~l~~N~l~~-l~~~~~---~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~  318 (454)
T 1jl5_A          249 LK-TLPDLP-----PSLEALNVRDNYLTD-LPELPQ---SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS  318 (454)
T ss_dssp             CS-SCCSCC-----TTCCEEECCSSCCSC-CCCCCT---TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTT
T ss_pred             CC-cccccc-----cccCEEECCCCcccc-cCcccC---cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCc
Confidence            76 344321     337888888887764 444333   33332222211110      000000 00000111222 47


Q ss_pred             ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccc--cCCccccCc--------
Q 041463          235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG--SIPPSMASL--------  304 (356)
Q Consensus       235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l--------  304 (356)
                      |+.|++++|.+.+ .|..   +++|++|++++|.++ .+|.   .+++|++|++++|++++  .+|..+..+        
T Consensus       319 L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~  390 (454)
T 1jl5_A          319 LEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE  390 (454)
T ss_dssp             CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred             CCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence            8888888888875 3332   477888888888887 4555   46788888888888886  567777766        


Q ss_pred             -----CCCCEEEcccCcccc
Q 041463          305 -----IFMNHLNLSYNNLSG  319 (356)
Q Consensus       305 -----~~L~~L~l~~n~~~~  319 (356)
                           ++|+.|++++|++++
T Consensus       391 i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          391 VPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             --------------------
T ss_pred             cccccCcCCEEECCCCcCCc
Confidence                 778888888888887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=1.2e-28  Score=226.10  Aligned_cols=311  Identities=19%  Similarity=0.156  Sum_probs=154.4

Q ss_pred             cccceEEEccccccccc----CCchHHhhccCCcEeeccCCccCCcCCCCC--CCC----CCcEEecCCCcccCcCCCCC
Q 041463            2 QTELRTLVLNKARISDT----IPDWFWQLSLTLDELDVAYNELRGRVPNSL--GFN----FPATVDLSSNNFEGRLPLCI   71 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~----~L~~L~l~~n~~~~~~~~~~   71 (356)
                      +++|++|++++|.+++.    ++..+..+ ++|++|++++|.+.+.....+  .+.    +|++|++++|.++......+
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            45677777777777642    23334444 677777777777654322221  222    57777777777653221123


Q ss_pred             CcccCCcccccEEeccccccccccccccc-----CCCCCcEEEcccCcccccc----cccccCCCCCcEEEeeccccccc
Q 041463           72 PKSIGNLKQLITLVISNNNLSGEIPLLFS-----NSSFLYILDMSNNSLSGSI----PESIGSLRTLRFLVLRNNYLSGE  142 (356)
Q Consensus        72 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~  142 (356)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+....    +..+..+++|++|++++|.+++.
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            45566677777777777776533222221     2345777777776665432    33344456666666666665533


Q ss_pred             cCcccc-----CCCCCcEEEecCCccccc----CCchhhcccccceeEEEcccCcccccC-----CCCcCCCCCCcccCC
Q 041463          143 LPLSLK-----NCTFMESLDLGDNNLSGN----IPAWIGASMPGLLHILDLSHNDLSGFI-----PPRVGNLSDMKVEPP  208 (356)
Q Consensus       143 ~~~~l~-----~l~~L~~L~l~~~~l~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~l~~L~~~~~  208 (356)
                      .+..+.     ..++|+.|++++|.+.+.    ++..+. .++ .++.|++++|.+.+..     +.....+++|+.+..
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            222221     234566666666655432    111111 122 2566666655543211     111112333333222


Q ss_pred             CCCccCCCeeeeecCCcccccccc-----------------------------ccccEEeecCCccccc----Cchhhhc
Q 041463          209 KSVQHEGRLRVVTKGSERKYFTTL-----------------------------YLVNLLDLSSTNLSAE----IPAELTS  255 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~L~~L~L~~~~l~~~----~~~~~~~  255 (356)
                      ........ .   .......+..+                             ++|+.|++++|.+++.    .+..+..
T Consensus       264 ~~n~l~~~-~---~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          264 WECGITAK-G---CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             TTSCCCHH-H---HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             cCCCCCHH-H---HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence            21110000 0   00000111222                             4566666666665543    2334444


Q ss_pred             ccccCeEEccCCcCcCCCCcCcC-----CCCCccEEEccCCcccc----cCCccccCcCCCCEEEcccCcccc
Q 041463          256 LVHLGTLNLSHNHLVGKIPEEIG-----NFEWLETLDLSKNKLSG----SIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       256 ~~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +++|++|++++|.+++..+..+.     ..++|++|++++|++++    .++..+..+++|++|++++|++++
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            56666666666666543222222     14566666666666664    345555556666666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.2e-26  Score=201.78  Aligned_cols=250  Identities=21%  Similarity=0.219  Sum_probs=173.4

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccC-------CcccccEEecccccccccccccc-
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIG-------NLKQLITLVISNNNLSGEIPLLF-   99 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~i~~~~~~~~-   99 (356)
                      ++|++|++++|.+  ..|..+. ..|+.|++++|.+...   .++..+.       .+++|++|++++|.+.+..|..+ 
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~-~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFT-DIIKSLSLKRLTVRAA---RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHH-HHHHHCCCCEEEEEEE---ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCceeEeeccccc--ccHHHHH-HHHhhcccccccccCC---CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            5677777777776  2333221 1277777777776421   1223332       57788888888888876666654 


Q ss_pred             -cCCCCCcEEEcccCcccccccccccCC-----CCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccC--Cchh
Q 041463          100 -SNSSFLYILDMSNNSLSGSIPESIGSL-----RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI--PAWI  171 (356)
Q Consensus       100 -~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~  171 (356)
                       ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..  +..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             7788888888888887755 5555554     78888888888887666677888888888888888765331  2122


Q ss_pred             -hcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCc
Q 041463          172 -GASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP  250 (356)
Q Consensus       172 -~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  250 (356)
                       ...++. |+.|++++|.+.+. +..                            ....+..+++|+.|++++|.+.+..+
T Consensus       196 ~~~~l~~-L~~L~L~~N~l~~~-~~~----------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          196 CPLKFPT-LQVLALRNAGMETP-SGV----------------------------CSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CTTSCTT-CCEEECTTSCCCCH-HHH----------------------------HHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HhccCCC-CCEEECCCCcCcch-HHH----------------------------HHHHHhcCCCCCEEECCCCcCCcccc
Confidence             122333 88888888876521 100                            01123455677889999999886553


Q ss_pred             -hhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          251 -AELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       251 -~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                       ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             34556789999999999998 7777766  8999999999999955 65 8889999999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.5e-24  Score=185.30  Aligned_cols=215  Identities=23%  Similarity=0.227  Sum_probs=140.5

Q ss_pred             cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463           80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG  159 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  159 (356)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45556666655554444455556666666666666554444555556666666666666654444555666666666666


Q ss_pred             CCcccccCCchhhcccccceeEEEcccCccccc-CCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEE
Q 041463          160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF-IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL  238 (356)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  238 (356)
                      +|.+.+..+..+ ..++. |+.|++++|.+.+. +|.                                .+..+++|+.|
T Consensus       109 ~n~l~~~~~~~~-~~l~~-L~~L~l~~n~l~~~~l~~--------------------------------~~~~l~~L~~L  154 (276)
T 2z62_A          109 ETNLASLENFPI-GHLKT-LKELNVAHNLIQSFKLPE--------------------------------YFSNLTNLEHL  154 (276)
T ss_dssp             TSCCCCSTTCCC-TTCTT-CCEEECCSSCCCCCCCCG--------------------------------GGGGCTTCCEE
T ss_pred             CCCccccCchhc-ccCCC-CCEEECcCCccceecCch--------------------------------hhccCCCCCEE
Confidence            665553222222 22222 66666666655421 122                                23455667778


Q ss_pred             eecCCcccccCchhhhcccccC----eEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463          239 DLSSTNLSAEIPAELTSLVHLG----TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY  314 (356)
Q Consensus       239 ~L~~~~l~~~~~~~~~~~~~L~----~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  314 (356)
                      ++++|.+.+..+..+..+++|+    +|++++|.+.+..+..+ ...+|++|++++|++++..+..|..+++|++|++++
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            9999988877777777777777    89999999985444444 445899999999999977777789999999999999


Q ss_pred             CcccccCCCCcccCc
Q 041463          315 NNLSGEIPNTNQFQT  329 (356)
Q Consensus       315 n~~~~~~~~~~~l~~  329 (356)
                      |++.+..|.+..+..
T Consensus       234 N~~~c~c~~l~~l~~  248 (276)
T 2z62_A          234 NPWDCSCPRIDYLSR  248 (276)
T ss_dssp             SCBCCCTTTTHHHHH
T ss_pred             CcccccCCchHHHHH
Confidence            999988877754433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.2e-24  Score=186.80  Aligned_cols=204  Identities=24%  Similarity=0.246  Sum_probs=116.7

Q ss_pred             ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCC
Q 041463           74 SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFM  153 (356)
Q Consensus        74 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  153 (356)
                      .+..++++++++++++.++ .+|..+.  +++++|++++|.+....+..+..+++|++|++++|.+++..+  ...+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            4556777888888887776 4444332  577888888888776666777777788888888877764322  2566677


Q ss_pred             cEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccc
Q 041463          154 ESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLY  233 (356)
Q Consensus       154 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (356)
                      +.|++++|.+. .+|..+.. ++. ++.|++++|.+++..+..+                                ..++
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~-l~~-L~~L~l~~N~l~~l~~~~~--------------------------------~~l~  124 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQT-LPA-LTVLDVSFNRLTSLPLGAL--------------------------------RGLG  124 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTT-CTT-CCEEECCSSCCCCCCSSTT--------------------------------TTCT
T ss_pred             CEEECCCCcCC-cCchhhcc-CCC-CCEEECCCCcCcccCHHHH--------------------------------cCCC
Confidence            77777777665 44433321 222 5566665555543222222                                2233


Q ss_pred             cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      +|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.++++
T Consensus       125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~  203 (290)
T 1p9a_G          125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH  203 (290)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeC
Confidence            3444555555555444444555555555555555555333334455555555555555555 344444444555555555


Q ss_pred             cCccc
Q 041463          314 YNNLS  318 (356)
Q Consensus       314 ~n~~~  318 (356)
                      +|++.
T Consensus       204 ~Np~~  208 (290)
T 1p9a_G          204 GNPWL  208 (290)
T ss_dssp             SCCBC
T ss_pred             CCCcc
Confidence            55554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=5.7e-24  Score=199.69  Aligned_cols=263  Identities=24%  Similarity=0.266  Sum_probs=202.4

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      ++++|+++++.++ .+|..+.   ++|++|++++|.++. ++.  .+++|++|++++|.+++     +|.   .+++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~  105 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-----LPV---LPPGLLE  105 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSC-----CCC---CCTTCCE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCc-----CCC---CCCCCCE
Confidence            5889999999998 5676554   689999999999984 444  57899999999999872     333   5799999


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      |++++|.+.+ ++.   .+++|++|++++|.+.. .|..   +++|++|++++|.++ .+|.   .+++|+.|++++|.+
T Consensus       106 L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          106 LSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQL  173 (622)
T ss_dssp             EEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred             EECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCC
Confidence            9999999884 343   57889999999999884 4433   489999999999998 4443   356899999999998


Q ss_pred             cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463          164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST  243 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  243 (356)
                      . .++.     ....|+.|++++|.+.+ +|.....+..|.   ....... .           ....+++|+.|++++|
T Consensus       174 ~-~l~~-----~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~---L~~N~l~-~-----------l~~~~~~L~~L~Ls~N  231 (622)
T 3g06_A          174 T-SLPM-----LPSGLQELSVSDNQLAS-LPTLPSELYKLW---AYNNRLT-S-----------LPALPSGLKELIVSGN  231 (622)
T ss_dssp             S-CCCC-----CCTTCCEEECCSSCCSC-CCCCCTTCCEEE---CCSSCCS-S-----------CCCCCTTCCEEECCSS
T ss_pred             C-CCcc-----cCCCCcEEECCCCCCCC-CCCccchhhEEE---CcCCccc-c-----------cCCCCCCCCEEEccCC
Confidence            7 4552     22349999999999874 444443333332   2221111 1           1123478999999999


Q ss_pred             cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC
Q 041463          244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN  323 (356)
Q Consensus       244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  323 (356)
                      .+++ +|   ..+++|++|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+.++++|+.|++++|++++.+|.
T Consensus       232 ~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          232 RLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             ccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            9985 44   45689999999999998 5665   5789999999999999 7788899999999999999999987665


Q ss_pred             C
Q 041463          324 T  324 (356)
Q Consensus       324 ~  324 (356)
                      .
T Consensus       303 ~  303 (622)
T 3g06_A          303 A  303 (622)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.5e-23  Score=191.02  Aligned_cols=280  Identities=24%  Similarity=0.322  Sum_probs=195.5

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      ++|++|++++|.+++ +|..    .++|++|++++|.+++. +..  .++|++|++++|.+++     +| .+..+++|+
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-~~~--~~~L~~L~L~~n~l~~-----lp-~~~~l~~L~  156 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNNQLEK-----LP-ELQNSSFLK  156 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSSCCSS-----CC-CCTTCTTCC
T ss_pred             CCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-cCC--CCCCCEEECcCCCCCC-----Cc-ccCCCCCCC
Confidence            468999999999986 5543    27899999999988853 222  2799999999999883     44 488999999


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN  162 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  162 (356)
                      +|++++|.+++ +|..   ..+|++|++++|.+.. .| .+..+++|++|++++|.+++ +|..   .++|+.|++++|.
T Consensus       157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~  226 (454)
T 1jl5_A          157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI  226 (454)
T ss_dssp             EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred             EEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCc
Confidence            99999999984 4543   3599999999999985 45 68999999999999999984 4432   2589999999999


Q ss_pred             ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC------Ceeeeec-CCccccc-ccccc
Q 041463          163 LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG------RLRVVTK-GSERKYF-TTLYL  234 (356)
Q Consensus       163 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~------~~~~~~~-~~~~~~~-~~~~~  234 (356)
                      +. .+|. + ..++. ++.|++++|.+.+ +|....   +|+.+........+      .+..... ......+ .-.++
T Consensus       227 l~-~lp~-~-~~l~~-L~~L~l~~N~l~~-l~~~~~---~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~  298 (454)
T 1jl5_A          227 LE-ELPE-L-QNLPF-LTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN  298 (454)
T ss_dssp             CS-SCCC-C-TTCTT-CCEEECCSSCCSS-CCSCCT---TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTT
T ss_pred             CC-cccc-c-CCCCC-CCEEECCCCcCCc-cccccc---ccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCc
Confidence            87 6664 3 33444 9999999999874 454433   34433222221111      0000000 0000000 11245


Q ss_pred             ccEEeecCCcccccCchhhhcc-cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          235 VNLLDLSSTNLSAEIPAELTSL-VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       235 L~~L~L~~~~l~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      |+.|++++|.+.+.     ..+ ++|++|++++|.+.+ +|..   +++|++|++++|+++ .+|.   .+++|++|+++
T Consensus       299 L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~  365 (454)
T 1jl5_A          299 LYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVE  365 (454)
T ss_dssp             CCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             CCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence            66666666666531     122 478899999988884 5544   578999999999998 5565   46889999999


Q ss_pred             cCcccc--cCCCC-ccc
Q 041463          314 YNNLSG--EIPNT-NQF  327 (356)
Q Consensus       314 ~n~~~~--~~~~~-~~l  327 (356)
                      +|++++  .+|.. ..+
T Consensus       366 ~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          366 YNPLREFPDIPESVEDL  382 (454)
T ss_dssp             SSCCSSCCCCCTTCCEE
T ss_pred             CCCCCcCCCChHHHHhh
Confidence            999998  44443 444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=4.6e-29  Score=228.95  Aligned_cols=315  Identities=16%  Similarity=0.122  Sum_probs=204.2

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCc----CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccC
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGR----VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIG   76 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~   76 (356)
                      .++|++|+++++.+++.....+...+++|++|++++|.+++.    ++..+ .+++|++|++++|.+.+..+..+...+.
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            367999999999998655444334449999999999998743    23333 5799999999999886432211112222


Q ss_pred             Ccc-cccEEecccccccc----cccccccCCCCCcEEEcccCcccccccccc-----cCCCCCcEEEeecccccccc---
Q 041463           77 NLK-QLITLVISNNNLSG----EIPLLFSNSSFLYILDMSNNSLSGSIPESI-----GSLRTLRFLVLRNNYLSGEL---  143 (356)
Q Consensus        77 ~l~-~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~l~~~~---  143 (356)
                      ... +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+++..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence            222 79999999999874    347788999999999999999875444332     23568999999999988543   


Q ss_pred             -CccccCCCCCcEEEecCCcccccCCchhhccc---ccceeEEEcccCccccc----CCCCcCCCCCCcccCCCCCccCC
Q 041463          144 -PLSLKNCTFMESLDLGDNNLSGNIPAWIGASM---PGLLHILDLSHNDLSGF----IPPRVGNLSDMKVEPPKSVQHEG  215 (356)
Q Consensus       144 -~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~~~~~~~~~~~  215 (356)
                       +..+..+++|+.|++++|.+.+..+..+...+   ...++.|++++|.+...    ++..+..+++|+.+.........
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             45567789999999999998754444443322   12499999999988753    34455556666664443322110


Q ss_pred             CeeeeecCCccccccccccccEEeecCCccccc----CchhhhcccccCeEEccCCcCcCCCCcCcC-----CCCCccEE
Q 041463          216 RLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEIG-----NFEWLETL  286 (356)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L  286 (356)
                       ..  ........+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|
T Consensus       242 -~~--~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          242 -VG--MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             -HH--HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             -HH--HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence             00  0000112233578999999999998864    455666788899999988887643222221     12355555


Q ss_pred             EccCCccccc----CCccccCcCCCCEEEcccCcccc
Q 041463          287 DLSKNKLSGS----IPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       287 ~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      ++++|.+++.    ++..+..+++|++|++++|++.+
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            5555555432    22333334445555555544443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=3.7e-24  Score=182.08  Aligned_cols=207  Identities=24%  Similarity=0.243  Sum_probs=145.2

Q ss_pred             ccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEe
Q 041463           79 KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL  158 (356)
Q Consensus        79 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  158 (356)
                      ...+.++++++.++ .+|..+.  +++++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            35778888888887 4555442  67889999998888666677888888999999888888554555677888888888


Q ss_pred             cCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEE
Q 041463          159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL  238 (356)
Q Consensus       159 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  238 (356)
                      ++|.+. ..+......++. |+.|++++|.+....+..+                                ..+++|+.|
T Consensus        93 ~~n~l~-~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~--------------------------------~~l~~L~~L  138 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVN-LAELRLDRNQLKSLPPRVF--------------------------------DSLTKLTYL  138 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSS-CCEEECCSSCCCCCCTTTT--------------------------------TTCTTCCEE
T ss_pred             CCCcCC-cCCHhHcccccC-CCEEECCCCccCeeCHHHh--------------------------------CcCcCCCEE
Confidence            888877 344333333433 7788887777654333222                                344455567


Q ss_pred             eecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       239 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      ++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            77777777655555677777777777777777555556777777777777777777555556777777777777777776


Q ss_pred             ccCC
Q 041463          319 GEIP  322 (356)
Q Consensus       319 ~~~~  322 (356)
                      ...+
T Consensus       219 c~c~  222 (270)
T 2o6q_A          219 CTCN  222 (270)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            5544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=6.5e-26  Score=208.51  Aligned_cols=147  Identities=25%  Similarity=0.187  Sum_probs=78.6

Q ss_pred             CCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           29 TLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      +|++|++++|.+++..+..+ .+++|++|++++|.+++..      .+..+++|++|++++|.+.+..     ..++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------DLESLSTLRTLDLNNNYVQELL-----VGPSIET  103 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------ECTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------ccccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence            66667776666665544444 4666666666666665321      1555666666666666655221     1255666


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      |++++|.+....+.   .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+...++. |+.|++++|
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~-L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTS
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc-ccEEecCCC
Confidence            66666665543332   23456666666666654445555555556666665555554333333322222 555555554


Q ss_pred             ccc
Q 041463          188 DLS  190 (356)
Q Consensus       188 ~l~  190 (356)
                      .+.
T Consensus       180 ~l~  182 (487)
T 3oja_A          180 FIY  182 (487)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.7e-27  Score=204.23  Aligned_cols=240  Identities=20%  Similarity=0.215  Sum_probs=181.4

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccc-cccccccc-------CCCCCcEEEcccCcccccccc
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLS-GEIPLLFS-------NSSFLYILDMSNNSLSGSIPE  121 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~  121 (356)
                      ..+|+.+++++|.+  .+|    ..+...  ++.|++++|.+. ...+..+.       .+++|++|++++|.+.+..|.
T Consensus        42 ~~~L~~l~l~~n~l--~~p----~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADL----GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEECTTHHHHCCTT--CCC----HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             CCCceeEeeccccc--ccH----HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            56788889999887  333    333322  888899999884 23444444       689999999999999877777


Q ss_pred             cc--cCCCCCcEEEeeccccccccCccccCC-----CCCcEEEecCCcccccCCchhhcccccceeEEEcccCccccc--
Q 041463          122 SI--GSLRTLRFLVLRNNYLSGELPLSLKNC-----TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF--  192 (356)
Q Consensus       122 ~~--~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--  192 (356)
                      .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+.. ++. |+.|++++|.+.+.  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~-l~~-L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV-FPA-LSTLDLSDNPELGERG  190 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC-CSS-CCEEECCSCTTCHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc-CCC-CCEEECCCCCcCcchH
Confidence            65  7899999999999999865 7767666     89999999999998555455543 444 99999999986543  


Q ss_pred             CCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc---CchhhhcccccCeEEccCCcC
Q 041463          193 IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE---IPAELTSLVHLGTLNLSHNHL  269 (356)
Q Consensus       193 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~L~~L~L~~n~i  269 (356)
                      .+..+                              .+..+++|+.|++++|.+.+.   ....+..+++|++|++++|.+
T Consensus       191 ~~~~~------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          191 LISAL------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             HHHHS------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             HHHHH------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence            12111                              123455677799999998832   223445678999999999999


Q ss_pred             cCCCC-cCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463          270 VGKIP-EEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       270 ~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      .+..| ..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |....++.|+.++
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~  302 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLS  302 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEE
T ss_pred             CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEe
Confidence            86664 45667899999999999999 6676665  7899999999999987 6688888888776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.6e-25  Score=192.82  Aligned_cols=254  Identities=19%  Similarity=0.156  Sum_probs=188.9

Q ss_pred             CcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           30 LDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      ++..++..+.+.......+ .+++|++|++++|.+++.    .+..+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC----CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC----CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            4455555555543333333 367899999999988752    23678889999999999999875544  8889999999


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND  188 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~  188 (356)
                      ++++|.+....     ..++|++|++++|.+++..+.   .+++|+.|++++|.+.+..+..+.. ++. ++.|++++|.
T Consensus        86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~-l~~-L~~L~Ls~N~  155 (317)
T 3o53_A           86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSR-VQYLDLKLNE  155 (317)
T ss_dssp             ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGG-GSS-EEEEECTTSC
T ss_pred             ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhc-cCC-CCEEECCCCC
Confidence            99999887433     237899999999998854433   3678999999999987544434432 333 8999999988


Q ss_pred             ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463          189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH  268 (356)
Q Consensus       189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~  268 (356)
                      +.+..+..+                               ...+++|+.|++++|.+.+.. . ...+++|++|++++|.
T Consensus       156 l~~~~~~~~-------------------------------~~~l~~L~~L~L~~N~l~~~~-~-~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          156 IDTVNFAEL-------------------------------AASSDTLEHLNLQYNFIYDVK-G-QVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             CCEEEGGGG-------------------------------GGGTTTCCEEECTTSCCCEEE-C-CCCCTTCCEEECCSSC
T ss_pred             CCcccHHHH-------------------------------hhccCcCCEEECCCCcCcccc-c-ccccccCCEEECCCCc
Confidence            765432222                               235667888999999998542 2 2247899999999999


Q ss_pred             CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc-ccCCCC-cccCcCCCcc
Q 041463          269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS-GEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~-~~l~~l~~~~  334 (356)
                      ++ .++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|.. ..++.|+.++
T Consensus       203 l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             CC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             CC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            98 45566889999999999999999 56777889999999999999998 444444 6677777766

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=5.1e-24  Score=181.89  Aligned_cols=209  Identities=20%  Similarity=0.202  Sum_probs=169.5

Q ss_pred             CCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEE
Q 041463          103 SFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL  182 (356)
Q Consensus       103 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L  182 (356)
                      ++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.. ++. |+.|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSS-LQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTT-CCEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-Ccc-ccEE
Confidence            57999999999999777778999999999999999998666778999999999999999998555444433 444 9999


Q ss_pred             EcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc-CchhhhcccccCe
Q 041463          183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE-IPAELTSLVHLGT  261 (356)
Q Consensus       183 ~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~L~~  261 (356)
                      ++++|.+.+..+..                                +..+++|+.|++++|.+.+. .|..+..+++|++
T Consensus       106 ~l~~n~l~~~~~~~--------------------------------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A          106 VAVETNLASLENFP--------------------------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             ECTTSCCCCSTTCC--------------------------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             ECCCCCccccCchh--------------------------------cccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            99999876443323                                34556677799999999864 5888999999999


Q ss_pred             EEccCCcCcCCCCcCcCCCCCcc----EEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcccc
Q 041463          262 LNLSHNHLVGKIPEEIGNFEWLE----TLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIY  336 (356)
Q Consensus       262 L~L~~n~i~~~~~~~~~~~~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~  336 (356)
                      |++++|.+++..+..+..+++|+    .|++++|.+++..+..+.. .+|++|++++|++++.++.. ..++.|+.++  
T Consensus       154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--  230 (276)
T 2z62_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIW--  230 (276)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEE--
T ss_pred             EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEE--
Confidence            99999999866667777666666    8999999999666665554 58999999999999887765 6677777665  


Q ss_pred             ccCccccCCCCCCCCCC
Q 041463          337 EGNLALCGDPLPKKCPE  353 (356)
Q Consensus       337 ~~~~~~~~~~~~~~c~~  353 (356)
                           +.+|||.|+|+.
T Consensus       231 -----l~~N~~~c~c~~  242 (276)
T 2z62_A          231 -----LHTNPWDCSCPR  242 (276)
T ss_dssp             -----CCSSCBCCCTTT
T ss_pred             -----ccCCcccccCCc
Confidence                 456899999963

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.9e-25  Score=200.95  Aligned_cols=253  Identities=19%  Similarity=0.133  Sum_probs=187.0

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCC
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL  129 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  129 (356)
                      +++|++|++++|.+.+.    .|..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+....+     .++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI  101 (487)
T ss_dssp             GGGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred             CCCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence            45899999999988752    34678888999999999998875554  8888999999999998874432     2789


Q ss_pred             cEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCC
Q 041463          130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK  209 (356)
Q Consensus       130 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~  209 (356)
                      ++|++++|.+++..+.   .+++|+.|++++|.+.+..+..+.. ++. |+.|++++|.+.+..|..+            
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-l~~-L~~L~Ls~N~l~~~~~~~l------------  164 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSR-VQYLDLKLNEIDTVNFAEL------------  164 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-GSS-EEEEECTTSCCCEEEGGGG------------
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-CCC-CCEEECCCCCCCCcChHHH------------
Confidence            9999999988855443   4578999999999887655555433 333 8999999988775444332            


Q ss_pred             CCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEcc
Q 041463          210 SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS  289 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~  289 (356)
                                         ...+++|+.|+|++|.+.+..+  ...+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus       165 -------------------~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls  222 (487)
T 3oja_A          165 -------------------AASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR  222 (487)
T ss_dssp             -------------------GGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred             -------------------hhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEec
Confidence                               2345677889999999986532  3357899999999999984 55568889999999999


Q ss_pred             CCcccccCCccccCcCCCCEEEcccCccc-ccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463          290 KNKLSGSIPPSMASLIFMNHLNLSYNNLS-GEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE  353 (356)
Q Consensus       290 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~  353 (356)
                      +|.++ .+|..+..+++|+.|++++|++. +.+|.. ..++.|+.+.+........++|+.|.|..
T Consensus       223 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             TSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             CCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            99999 56777888999999999999998 444333 55666665542111112236778888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=8e-23  Score=173.85  Aligned_cols=204  Identities=24%  Similarity=0.239  Sum_probs=161.4

Q ss_pred             CCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCc
Q 041463           51 NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR  130 (356)
Q Consensus        51 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  130 (356)
                      ...++++++++.++ .+    |..+.  +++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+
T Consensus        16 ~~~~~l~~~~~~l~-~i----p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AI----PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TTTTEEECTTSCCS-SC----CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCCCEEEccCCCCC-cc----CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            35788999999887 33    33332  6789999999999877677889999999999999999866666778899999


Q ss_pred             EEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCC
Q 041463          131 FLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS  210 (356)
Q Consensus       131 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~  210 (356)
                      +|++++|.++...+..+..+++|+.|++++|.+.+..+..+ ..++. |+.|++++|.+.+..+..+             
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~-L~~L~Ls~n~l~~~~~~~~-------------  153 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF-DSLTK-LTYLSLGYNELQSLPKGVF-------------  153 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT-TTCTT-CCEEECCSSCCCCCCTTTT-------------
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh-CcCcC-CCEEECCCCcCCccCHhHc-------------
Confidence            99999999986666677889999999999999874444333 33444 9999999998764333223             


Q ss_pred             CccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC
Q 041463          211 VQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK  290 (356)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~  290 (356)
                                         ..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       154 -------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          154 -------------------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             -------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -------------------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence                               3455667799999999877777788899999999999999865566788899999999999


Q ss_pred             Ccccc
Q 041463          291 NKLSG  295 (356)
Q Consensus       291 n~i~~  295 (356)
                      |++..
T Consensus       215 N~~~c  219 (270)
T 2o6q_A          215 NPWDC  219 (270)
T ss_dssp             SCBCC
T ss_pred             CCeeC
Confidence            98863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.8e-22  Score=171.14  Aligned_cols=201  Identities=24%  Similarity=0.212  Sum_probs=162.3

Q ss_pred             CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC
Q 041463           49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT  128 (356)
Q Consensus        49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  128 (356)
                      .++++++++++++.++ .    +|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+....+.  ..+++
T Consensus         8 ~l~~l~~l~~~~~~l~-~----ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~   78 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-A----LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV   78 (290)
T ss_dssp             CSTTCCEEECTTSCCS-S----CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred             ccCCccEEECCCCCCC-c----CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence            5788999999999887 3    344442  6899999999999877788899999999999999998854432  67899


Q ss_pred             CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCC
Q 041463          129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPP  208 (356)
Q Consensus       129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~  208 (356)
                      |++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+ ..++. |+.|++++|.+.+..+..+           
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~l~~-L~~L~L~~N~l~~~~~~~~-----------  144 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGE-LQELYLKGNELKTLPPGLL-----------  144 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-TTCTT-CCEEECTTSCCCCCCTTTT-----------
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH-cCCCC-CCEEECCCCCCCccChhhc-----------
Confidence            999999999998 778888899999999999999984333434 33444 9999999998874433333           


Q ss_pred             CCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEc
Q 041463          209 KSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL  288 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L  288 (356)
                                           ..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+...++|+.|++
T Consensus       145 ---------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          145 ---------------------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             ---------------------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             ---------------------ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEe
Confidence                                 34556677999999999766677888999999999999998 77888888889999999


Q ss_pred             cCCccc
Q 041463          289 SKNKLS  294 (356)
Q Consensus       289 ~~n~i~  294 (356)
                      ++|++.
T Consensus       203 ~~Np~~  208 (290)
T 1p9a_G          203 HGNPWL  208 (290)
T ss_dssp             CSCCBC
T ss_pred             CCCCcc
Confidence            999876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=1.6e-21  Score=183.13  Aligned_cols=256  Identities=25%  Similarity=0.244  Sum_probs=194.3

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      .++++|+++++.++ .+|..+. ++|++|++++|.++ .    +|.   .+++|++|++++|.++ .+|.   .+++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~-~----lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-S----LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCS-C----CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCE
T ss_pred             CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCC-C----CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCE
Confidence            46999999999998 5555444 89999999999987 2    333   4789999999999998 4444   6799999


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      |++++|.+... |.   .+++|++|++++|.++ .+|..   +++|++|++++|.+. .++..     +..++.|++++|
T Consensus       106 L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~~-----~~~L~~L~L~~N  171 (622)
T 3g06_A          106 LSIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL-----PSELCKLWAYNN  171 (622)
T ss_dssp             EEECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC-----CTTCCEEECCSS
T ss_pred             EECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCCc-----cCCCCEEECCCC
Confidence            99999999843 43   5679999999999998 45543   489999999999987 44432     234999999999


Q ss_pred             cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463          188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN  267 (356)
Q Consensus       188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n  267 (356)
                      .+.. +|.   .+++|+.+.........            .....++|+.|++++|.+.. ++.   .+++|++|++++|
T Consensus       172 ~l~~-l~~---~~~~L~~L~Ls~N~l~~------------l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N  231 (622)
T 3g06_A          172 QLTS-LPM---LPSGLQELSVSDNQLAS------------LPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGN  231 (622)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC------------CCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSS
T ss_pred             CCCC-Ccc---cCCCCcEEECCCCCCCC------------CCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCC
Confidence            9874 453   34445543333322111            11134789999999999984 433   2478999999999


Q ss_pred             cCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCc
Q 041463          268 HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNL  340 (356)
Q Consensus       268 ~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~  340 (356)
                      .++ .+|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++..++.+..++.|+.++ +.+|+
T Consensus       232 ~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~-L~~N~  295 (622)
T 3g06_A          232 RLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN-LEGNP  295 (622)
T ss_dssp             CCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE-CCSCC
T ss_pred             ccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEE-ecCCC
Confidence            998 455   45689999999999999 5565   56899999999999996655568888888877 44443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=3.4e-22  Score=170.12  Aligned_cols=222  Identities=19%  Similarity=0.165  Sum_probs=142.1

Q ss_pred             CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      .+..+++..+.+.+. .....+++|+.|+++++.+..     + ..+..+++|++|++++|.+.+.  ..+..+++|++|
T Consensus        20 ~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L   90 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-----V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred             HHHHHHhcCcccccc-cccccccceeeeeeCCCCccc-----c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence            444566666555422 222246677777777776652     1 2355667777777777766532  245566666666


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND  188 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~  188 (356)
                      ++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.                        
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------  146 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ------------------------  146 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC------------------------
Confidence            66666666555555566666666666666665444444555555555555555543                        


Q ss_pred             ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463          189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH  268 (356)
Q Consensus       189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~  268 (356)
                        +..+..                                +..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus       147 --~~~~~~--------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          147 --SLPKGV--------------------------------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             --CCCTTT--------------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --ccCHHH--------------------------------hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence              221111                                2233445557777777776666667778888888888888


Q ss_pred             CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC
Q 041463          269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT  324 (356)
Q Consensus       269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  324 (356)
                      +.+..+..+..+++|++|++++|.+.       +.++.|+.+++..|.++|.+|..
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCc
Confidence            88666667788888999999988776       33567888888888998888776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.6e-24  Score=192.21  Aligned_cols=159  Identities=19%  Similarity=0.172  Sum_probs=85.9

Q ss_pred             EEEcccccccccCCchHHhhccCCcEeeccCCccCCcCC----CCC-CCC-CCcEEecCCCcccCcCCCCCCcccCCc-c
Q 041463            7 TLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVP----NSL-GFN-FPATVDLSSNNFEGRLPLCIPKSIGNL-K   79 (356)
Q Consensus         7 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l-~   79 (356)
                      .+.++++.+++.+|..+... ++|++|++++|.+++..+    ..+ .++ +|++|++++|.+++..+..+...+... +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            35677788876666544333 558888888887775544    333 455 677777777776643221111111222 6


Q ss_pred             cccEEeccccccccccccc----ccCC-CCCcEEEcccCcccccccccc----cC-CCCCcEEEeeccccccccC----c
Q 041463           80 QLITLVISNNNLSGEIPLL----FSNS-SFLYILDMSNNSLSGSIPESI----GS-LRTLRFLVLRNNYLSGELP----L  145 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~l~~~~~----~  145 (356)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+.+..+..+    .. .++|++|++++|.+++..+    .
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            6677777777665444432    2233 566666666666654443322    22 2356666666666553222    2


Q ss_pred             cccCCC-CCcEEEecCCccccc
Q 041463          146 SLKNCT-FMESLDLGDNNLSGN  166 (356)
Q Consensus       146 ~l~~l~-~L~~L~l~~~~l~~~  166 (356)
                      .+...+ +|+.|++++|.+.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHhcCCccccEeeecCCCCchh
Confidence            223333 566666666655533

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.3e-22  Score=172.59  Aligned_cols=226  Identities=21%  Similarity=0.191  Sum_probs=165.5

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEe
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLV   85 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~   85 (356)
                      ..+++..+.+.+..  ....+ ++|++|++.++.++ ..+....+++|++|++++|.+.+     + ..+..+++|++|+
T Consensus        22 ~~l~l~~~~~~~~~--~~~~l-~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~   91 (272)
T 3rfs_A           22 IKANLKKKSVTDAV--TQNEL-NSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD-----I-SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHTCSCTTSEE--CHHHH-TTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC-----C-GGGTTCTTCCEEE
T ss_pred             HHHHhcCccccccc--ccccc-cceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC-----c-hhhcCCCCCCEEE
Confidence            34455555565432  35555 89999999999987 44445579999999999999874     2 3678899999999


Q ss_pred             cccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccc
Q 041463           86 ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG  165 (356)
Q Consensus        86 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  165 (356)
                      +++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence            99999997777778999999999999999997777778999999999999999986666667888888888888887763


Q ss_pred             cCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcc
Q 041463          166 NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNL  245 (356)
Q Consensus       166 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l  245 (356)
                       .+....                                                         ..+++|+.|++++|.+
T Consensus       172 -~~~~~~---------------------------------------------------------~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          172 -LPEGVF---------------------------------------------------------DKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             -CCTTTT---------------------------------------------------------TTCTTCCEEECCSSCC
T ss_pred             -cCHHHh---------------------------------------------------------cCCccCCEEECCCCcC
Confidence             222111                                                         1222344466666666


Q ss_pred             cccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463          246 SAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF  306 (356)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  306 (356)
                      .+..+..+..+++|++|++++|.+.       +.+++|+.|+++.|.+++.+|..++.++.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            5555555666677777777777654       23556777777777777777766665443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=8e-25  Score=196.01  Aligned_cols=93  Identities=20%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             cccccccEEeecCCccc----ccCchhhhcccccCeEEccCCcCcCC----CCcCc--CCCCCccEEEccCCcccc----
Q 041463          230 TTLYLVNLLDLSSTNLS----AEIPAELTSLVHLGTLNLSHNHLVGK----IPEEI--GNFEWLETLDLSKNKLSG----  295 (356)
Q Consensus       230 ~~~~~L~~L~L~~~~l~----~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~--~~~~~L~~L~L~~n~i~~----  295 (356)
                      ..+++|+.|+|++|.++    ..++..+..+++|++|++++|.+++.    ++..+  +.+++|++|+|++|.+++    
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~  292 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  292 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence            44556666888888775    34556677778888888888887643    34444  337788888888888875    


Q ss_pred             cCCccc-cCcCCCCEEEcccCcccccCC
Q 041463          296 SIPPSM-ASLIFMNHLNLSYNNLSGEIP  322 (356)
Q Consensus       296 ~~~~~~-~~l~~L~~L~l~~n~~~~~~~  322 (356)
                      .++..+ .++++|+.|++++|++++..+
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            255555 457888888888888876654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.5e-23  Score=182.78  Aligned_cols=253  Identities=19%  Similarity=0.151  Sum_probs=159.7

Q ss_pred             CcEeeccCCccCCcCCCCC-CC--CCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc-ccccccCCCCC
Q 041463           30 LDELDVAYNELRGRVPNSL-GF--NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE-IPLLFSNSSFL  105 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~-~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L  105 (356)
                      ++.++++++.+..   ..+ .+  +.++.|++++|.+.+..+     .+..+++|++|++++|.+.+. .+..+..+++|
T Consensus        49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLA-----EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCC-----SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             heeeccccccCCH---HHHHhhhhccceEEEcCCccccccch-----hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            5666666655441   111 22  566666666666654322     234566777777777766543 55556667777


Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEeecc-ccccc-cCccccCCCCCcEEEecCC-cccccCCchhhcccccceeEE
Q 041463          106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNN-YLSGE-LPLSLKNCTFMESLDLGDN-NLSGNIPAWIGASMPGLLHIL  182 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~L~~L  182 (356)
                      ++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|+.|++++| .+++.........++..|+.|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            77777777666556666666777777777777 45532 4444666777777777777 665331122223344137777


Q ss_pred             EcccCc--ccc-cCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc-ccccCchhhhcccc
Q 041463          183 DLSHND--LSG-FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN-LSAEIPAELTSLVH  258 (356)
Q Consensus       183 ~l~~~~--l~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~  258 (356)
                      ++++|.  +.. .++                                ..+..+++|+.|++++|. +++..+..+..+++
T Consensus       201 ~l~~~~~~~~~~~l~--------------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~  248 (336)
T 2ast_B          201 NLSGYRKNLQKSDLS--------------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  248 (336)
T ss_dssp             ECCSCGGGSCHHHHH--------------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             EeCCCcccCCHHHHH--------------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence            777773  321 111                                123456678889999998 66666778888899


Q ss_pred             cCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCcccccCCccccCc-CCCCEEEcccCcccccCCCCcc
Q 041463          259 LGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASL-IFMNHLNLSYNNLSGEIPNTNQ  326 (356)
Q Consensus       259 L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~  326 (356)
                      |++|++++|. +.+.....+..+++|++|++++| +++.   .+..+ ..+..|++++|++++..|...+
T Consensus       249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence            9999999995 43333335778999999999999 5432   23333 3477778999999998887733

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1e-23  Score=185.30  Aligned_cols=151  Identities=17%  Similarity=0.141  Sum_probs=75.0

Q ss_pred             ceEEEcccccccccCCchHHhh-ccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            5 LRTLVLNKARISDTIPDWFWQL-SLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         5 L~~L~l~~~~i~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      +++++++++.+..   ..+..+ .++++.|++.+|.+.+..+..+.+++|++|++++|.+.+.   .++..+..+++|++
T Consensus        49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSE
T ss_pred             heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCE
Confidence            4455555555441   222221 1455555555555555544444555555555555554321   02234445555555


Q ss_pred             EecccccccccccccccCCCCCcEEEcccC-ccccc-ccccccCCCCCcEEEeecc-ccccc-cCccccCCC-CCcEEEe
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNN-SLSGS-IPESIGSLRTLRFLVLRNN-YLSGE-LPLSLKNCT-FMESLDL  158 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~-~L~~L~l  158 (356)
                      |++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            555555555444455555555555555555 34321 3333444555555555555 55432 233445555 5555555


Q ss_pred             cCC
Q 041463          159 GDN  161 (356)
Q Consensus       159 ~~~  161 (356)
                      ++|
T Consensus       203 ~~~  205 (336)
T 2ast_B          203 SGY  205 (336)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2.3e-21  Score=161.80  Aligned_cols=85  Identities=21%  Similarity=0.171  Sum_probs=46.4

Q ss_pred             cccEEecccccccccccccccCCCCCcEEEcccCc-ccccccccccCCCCCcEEEeec-cccccccCccccCCCCCcEEE
Q 041463           80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS-LSGSIPESIGSLRTLRFLVLRN-NYLSGELPLSLKNCTFMESLD  157 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~  157 (356)
                      ++++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444455555566666666554 5544444555555666666655 555533344455555555555


Q ss_pred             ecCCccc
Q 041463          158 LGDNNLS  164 (356)
Q Consensus       158 l~~~~l~  164 (356)
                      +++|.+.
T Consensus       112 l~~n~l~  118 (239)
T 2xwt_C          112 IFNTGLK  118 (239)
T ss_dssp             EEEECCC
T ss_pred             CCCCCCc
Confidence            5555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.5e-21  Score=162.99  Aligned_cols=196  Identities=15%  Similarity=0.162  Sum_probs=156.9

Q ss_pred             CCCcEEEcccCcccccccccccCCCCCcEEEeeccc-cccccCccccCCCCCcEEEecC-CcccccCCchhhccccccee
Q 041463          103 SFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY-LSGELPLSLKNCTFMESLDLGD-NNLSGNIPAWIGASMPGLLH  180 (356)
Q Consensus       103 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~L~  180 (356)
                      ++|++|++++|.+....+..+..+++|++|++++|. ++...+..+..+++|+.|++++ |.+. .++......++. |+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~-L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPL-LK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTT-CC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCC-CC
Confidence            489999999999997777789999999999999997 8866666889999999999998 8887 444433344544 99


Q ss_pred             EEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC-cccccCchhhhccccc
Q 041463          181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST-NLSAEIPAELTSLVHL  259 (356)
Q Consensus       181 ~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~L  259 (356)
                      .|++++|.+.+ +|. +..+++|+                             .|+.|++++| .+.+..+..|..+++|
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~-----------------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L  157 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTD-----------------------------IFFILEITDNPYMTSIPVNAFQGLCNE  157 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCC-----------------------------SEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred             EEeCCCCCCcc-ccc-cccccccc-----------------------------cccEEECCCCcchhhcCcccccchhcc
Confidence            99999998874 343 43333322                             2447999999 8987777789999999


Q ss_pred             C-eEEccCCcCcCCCCcCcCCCCCccEEEccCCc-ccccCCccccCc-CCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463          260 G-TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK-LSGSIPPSMASL-IFMNHLNLSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       260 ~-~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      + +|++++|.++...+..+.. ++|++|++++|+ +++..+..|.++ ++|++|++++|++++.++.  .++.|+.++
T Consensus       158 ~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~  232 (239)
T 2xwt_C          158 TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELI  232 (239)
T ss_dssp             EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEE
T ss_pred             eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceee
Confidence            9 9999999998333334444 899999999995 987777889999 9999999999999976655  577777766

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=9e-23  Score=177.10  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=55.4

Q ss_pred             cccEEeecCCcccccCc--h-hhhcccccCeEEccCCcCcCCCCcCcCCC---CCccEEEccCCcccccCCccccCcCCC
Q 041463          234 LVNLLDLSSTNLSAEIP--A-ELTSLVHLGTLNLSHNHLVGKIPEEIGNF---EWLETLDLSKNKLSGSIPPSMASLIFM  307 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~--~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L  307 (356)
                      +|+.|++++|.++....  . .+..+++|++|++++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|
T Consensus       198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L  274 (310)
T 4glp_A          198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL  274 (310)
T ss_dssp             CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred             CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence            44446666666652111  1 23455666777777776665545555444   56777777777666 4444442  566


Q ss_pred             CEEEcccCcccccCCCCcccCcCCCcc
Q 041463          308 NHLNLSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       308 ~~L~l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      ++|++++|++++. |....++.|+.++
T Consensus       275 ~~L~Ls~N~l~~~-~~~~~l~~L~~L~  300 (310)
T 4glp_A          275 RVLDLSSNRLNRA-PQPDELPEVDNLT  300 (310)
T ss_dssp             SCEECCSCCCCSC-CCTTSCCCCSCEE
T ss_pred             CEEECCCCcCCCC-chhhhCCCccEEE
Confidence            6777777766654 3345556666555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=3.8e-21  Score=169.69  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=42.7

Q ss_pred             ccEEeecCCcccccCchhhhcccccCeEEccC-CcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSH-NHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      ++.|++++|.++...+..|. ..+|+++.+.+ |.++...++.|..+++|++|++++|+++...+..   +.+|+.|.+.
T Consensus       156 l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l  231 (350)
T 4ay9_X          156 SVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRAR  231 (350)
T ss_dssp             CEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECT
T ss_pred             hhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhc
Confidence            33455555555533333332 24455555543 3344222234455555555555555555222222   2334444444


Q ss_pred             cCcccccCCCCcccCcCCCcc
Q 041463          314 YNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       314 ~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      ++.-...+|.+..++.|+.++
T Consensus       232 ~~~~l~~lP~l~~l~~L~~l~  252 (350)
T 4ay9_X          232 STYNLKKLPTLEKLVALMEAS  252 (350)
T ss_dssp             TCTTCCCCCCTTTCCSCCEEE
T ss_pred             cCCCcCcCCCchhCcChhhCc
Confidence            444444445555555554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=1.1e-23  Score=199.20  Aligned_cols=327  Identities=14%  Similarity=0.071  Sum_probs=195.6

Q ss_pred             cccceEEEcccccccccCCch---HHhhccCCcEeeccCCccCCcC----CCCC-CCCCCcEEecCCCcccCcCC-----
Q 041463            2 QTELRTLVLNKARISDTIPDW---FWQLSLTLDELDVAYNELRGRV----PNSL-GFNFPATVDLSSNNFEGRLP-----   68 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~~~-----   68 (356)
                      +++|++|+|++|.+++....+   +...+++|++|++++|.+.+..    +..+ ++++|++|++++|.+.+ ++     
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence            678999999999887653332   2233488999999888876222    2222 47888888888887652 11     


Q ss_pred             ------------------CCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCC
Q 041463           69 ------------------LCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTL  129 (356)
Q Consensus        69 ------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L  129 (356)
                                        ...+..+..+++|+.+++.++... ..+..+..+++|++|++++|.+.+... ..+..+++|
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence                              011123334445555555443222 455566677888888888887654333 335677888


Q ss_pred             cEEEeeccccccccCccccCCCCCcEEEecC-----------CcccccCCchhhcccccceeEEEcccCcccccCCCCcC
Q 041463          130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGD-----------NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVG  198 (356)
Q Consensus       130 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  198 (356)
                      ++|+++++-....++.....+++|+.|++++           +.+++.....+...++. |+.|++..+.+++..+..+.
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE-LEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT-CSEEEEEESCCCHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc-CeEEEeecCCccHHHHHHHH
Confidence            8888874322222333345677888888883           34443222232333443 88888877766544333333


Q ss_pred             C-CCCCcccCCCCC---ccCCCeeeeecCCccccccccccccEEeecCCc--ccccCchhhh-cccccCeEEccCCcCcC
Q 041463          199 N-LSDMKVEPPKSV---QHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN--LSAEIPAELT-SLVHLGTLNLSHNHLVG  271 (356)
Q Consensus       199 ~-l~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~-~~~~L~~L~L~~n~i~~  271 (356)
                      . +++|+.+.....   ...+....  .......+..+++|+.|+++.|.  +.+.....+. .+++|++|++++|.+++
T Consensus       400 ~~~~~L~~L~l~~~~~~n~l~~~p~--~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  477 (592)
T 3ogk_B          400 TYLKNLCDFRLVLLDREERITDLPL--DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD  477 (592)
T ss_dssp             HHCCSCCEEEEEECSCCSCCSSCCC--HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred             hhCCCCcEEEEeecCCCccccCchH--HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence            2 444443222110   00100000  00012235568899999997654  5544444443 37899999999999875


Q ss_pred             C-CCcCcCCCCCccEEEccCCccccc-CCccccCcCCCCEEEcccCcccccCCC-C-cccCcCCCc
Q 041463          272 K-IPEEIGNFEWLETLDLSKNKLSGS-IPPSMASLIFMNHLNLSYNNLSGEIPN-T-NQFQTLNDP  333 (356)
Q Consensus       272 ~-~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~-~~l~~l~~~  333 (356)
                      . ++..+..+++|++|++++|.+++. .+..+..+++|++|++++|+++..-.. + ..++.++..
T Consensus       478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~  543 (592)
T 3ogk_B          478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE  543 (592)
T ss_dssp             HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred             HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence            3 344557889999999999998754 344456789999999999998865222 2 445555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=7.9e-21  Score=159.69  Aligned_cols=184  Identities=21%  Similarity=0.205  Sum_probs=111.6

Q ss_pred             cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463           80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG  159 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  159 (356)
                      ..++++++++.++ .+|..+.  +.+++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4556666666665 3343332  456666666666665555556666666666666666654444445555566666665


Q ss_pred             CCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEe
Q 041463          160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD  239 (356)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  239 (356)
                      +|.+.+ .+                         +..                                +..+++|+.|+
T Consensus        92 ~n~l~~-~~-------------------------~~~--------------------------------~~~l~~L~~L~  113 (251)
T 3m19_A           92 NNQLAS-LP-------------------------LGV--------------------------------FDHLTQLDKLY  113 (251)
T ss_dssp             TSCCCC-CC-------------------------TTT--------------------------------TTTCTTCCEEE
T ss_pred             CCcccc-cC-------------------------hhH--------------------------------hcccCCCCEEE
Confidence            555542 11                         111                                12333455566


Q ss_pred             ecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            66666665555556667777777777777775545567777777777777777776566667777777777777777766


Q ss_pred             cCCCC
Q 041463          320 EIPNT  324 (356)
Q Consensus       320 ~~~~~  324 (356)
                      ..+..
T Consensus       194 ~~~~~  198 (251)
T 3m19_A          194 SRCEI  198 (251)
T ss_dssp             TSTTH
T ss_pred             Ccccc
Confidence            54444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=7e-24  Score=189.86  Aligned_cols=265  Identities=17%  Similarity=0.151  Sum_probs=186.1

Q ss_pred             cCCchHHhhccCCcEeeccCCccCCcCC----CCC-CCCCCcEEecCCCcccCcCCCCCCcc-------cCCcccccEEe
Q 041463           18 TIPDWFWQLSLTLDELDVAYNELRGRVP----NSL-GFNFPATVDLSSNNFEGRLPLCIPKS-------IGNLKQLITLV   85 (356)
Q Consensus        18 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~~l~~L~~L~   85 (356)
                      .++..+..+ ++|++|++++|.+....+    ..+ .+++|++|++++|.+.. +...+|..       +..+++|++|+
T Consensus        23 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~-l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           23 SVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR-VKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             TTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS-CGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc-cccchhHHHHHHHHHHhhCCcccEEE
Confidence            355666666 899999999998886432    223 58999999999975431 11122233       36789999999


Q ss_pred             cccccccc----cccccccCCCCCcEEEcccCccccccccccc----CC---------CCCcEEEeecccccc-ccC---
Q 041463           86 ISNNNLSG----EIPLLFSNSSFLYILDMSNNSLSGSIPESIG----SL---------RTLRFLVLRNNYLSG-ELP---  144 (356)
Q Consensus        86 l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~l~~-~~~---  144 (356)
                      +++|.+..    .++..+..+++|++|++++|.+....+..+.    .+         ++|++|++++|.++. ..+   
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99999986    3666788899999999999998754443333    33         899999999999873 333   


Q ss_pred             ccccCCCCCcEEEecCCcccccC----Cc-hhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeee
Q 041463          145 LSLKNCTFMESLDLGDNNLSGNI----PA-WIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV  219 (356)
Q Consensus       145 ~~l~~l~~L~~L~l~~~~l~~~~----~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~  219 (356)
                      ..+..+++|+.|++++|.+....    .. .+ ..++ .|+.|++++|.+.......                       
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~-~L~~L~Ls~n~l~~~g~~~-----------------------  235 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQ-ELKVLDLQDNTFTHLGSSA-----------------------  235 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCT-TCCEEECCSSCCHHHHHHH-----------------------
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCC-CccEEECcCCCCCcHHHHH-----------------------
Confidence            35678889999999999886321    11 22 2233 3999999999875210000                       


Q ss_pred             eecCCccccccccccccEEeecCCccccc----Cchhhhc--ccccCeEEccCCcCcC----CCCcCc-CCCCCccEEEc
Q 041463          220 VTKGSERKYFTTLYLVNLLDLSSTNLSAE----IPAELTS--LVHLGTLNLSHNHLVG----KIPEEI-GNFEWLETLDL  288 (356)
Q Consensus       220 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~--~~~L~~L~L~~n~i~~----~~~~~~-~~~~~L~~L~L  288 (356)
                           .+..+..+++|+.|+|++|.+.+.    ++..+..  +++|++|++++|.+++    .+|..+ ..+++|++|++
T Consensus       236 -----l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          236 -----LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             -----HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             -----HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence                 112345667788899999999865    3455533  8999999999999986    366666 56899999999


Q ss_pred             cCCcccccCC--ccc-cCcCCCCEEEccc
Q 041463          289 SKNKLSGSIP--PSM-ASLIFMNHLNLSY  314 (356)
Q Consensus       289 ~~n~i~~~~~--~~~-~~l~~L~~L~l~~  314 (356)
                      ++|++++..+  ..+ ..++.++.+++..
T Consensus       311 ~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          311 NGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             TTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             cCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence            9999996653  222 2355555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=5.5e-23  Score=182.32  Aligned_cols=261  Identities=19%  Similarity=0.181  Sum_probs=192.7

Q ss_pred             EeeccCCccCCcCCCCCCCC-CCcEEecCCCcccCcCCCCCCcccCCcc-cccEEecccccccccccccccCC-----CC
Q 041463           32 ELDVAYNELRGRVPNSLGFN-FPATVDLSSNNFEGRLPLCIPKSIGNLK-QLITLVISNNNLSGEIPLLFSNS-----SF  104 (356)
Q Consensus        32 ~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l-----~~  104 (356)
                      .+.++.+.+++.++.+...+ +|++|++++|.+++..+..+...+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35778888888777777654 5999999999988533222225677788 89999999999987766666664     99


Q ss_pred             CcEEEcccCccccccccc----ccCC-CCCcEEEeeccccccccCccc----cC-CCCCcEEEecCCcccccCCchhhcc
Q 041463          105 LYILDMSNNSLSGSIPES----IGSL-RTLRFLVLRNNYLSGELPLSL----KN-CTFMESLDLGDNNLSGNIPAWIGAS  174 (356)
Q Consensus       105 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~l~~~~~~~l----~~-l~~L~~L~l~~~~l~~~~~~~~~~~  174 (356)
                      |++|++++|.+.+..+..    +... ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+.....+...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998666553    3344 799999999999986544443    33 3699999999999885444443222


Q ss_pred             ---cccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccc-ccccEEeecCCccccc--
Q 041463          175 ---MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL-YLVNLLDLSSTNLSAE--  248 (356)
Q Consensus       175 ---~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~l~~~--  248 (356)
                         .+..++.|++++|.+.+..+..+.                            ..+... ++|+.|++++|.+.+.  
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~----------------------------~~l~~~~~~L~~L~Ls~N~i~~~~~  213 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELA----------------------------KFLASIPASVTSLDLSANLLGLKSY  213 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHH----------------------------HHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHH----------------------------HHHHhCCCCCCEEECCCCCCChhHH
Confidence               233599999999988644322211                            123344 4899999999999864  


Q ss_pred             --Cchhhhc-ccccCeEEccCCcCcCCCC----cCcCCCCCccEEEccCCccccc-------CCccccCcCCCCEEEccc
Q 041463          249 --IPAELTS-LVHLGTLNLSHNHLVGKIP----EEIGNFEWLETLDLSKNKLSGS-------IPPSMASLIFMNHLNLSY  314 (356)
Q Consensus       249 --~~~~~~~-~~~L~~L~L~~n~i~~~~~----~~~~~~~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~l~~  314 (356)
                        ++..+.. .++|++|++++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|++||+++
T Consensus       214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence              3444544 3599999999999986543    3457789999999999995432       334567788999999999


Q ss_pred             Cccccc
Q 041463          315 NNLSGE  320 (356)
Q Consensus       315 n~~~~~  320 (356)
                      |++...
T Consensus       294 N~l~~~  299 (362)
T 3goz_A          294 KEIHPS  299 (362)
T ss_dssp             CBCCGG
T ss_pred             CcCCCc
Confidence            999866

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=1.1e-24  Score=206.14  Aligned_cols=134  Identities=10%  Similarity=0.066  Sum_probs=79.9

Q ss_pred             cccceEEEcccccccccCCchHHhhccC-CcEeeccCCc-cCCc-CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCC
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNE-LRGR-VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGN   77 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~-L~~L~l~~~~-~~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~   77 (356)
                      +++|++|+|++|.+++..+..+...++. |++|++.+|. +... ..... ++++|++|++++|.+++.....++..+..
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            4677888888887766555556554455 8888887775 2111 11111 46788888888887654321112223445


Q ss_pred             cccccEEecccccccc----cccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeec
Q 041463           78 LKQLITLVISNNNLSG----EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN  136 (356)
Q Consensus        78 l~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  136 (356)
                      +++|++|++++|.+.+    ..+..+..+++|++|++++|.+.+ .+..+..+++|++|.++.
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            6777777777777652    233445567777888777776653 334455555666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=9e-21  Score=164.14  Aligned_cols=126  Identities=20%  Similarity=0.326  Sum_probs=79.3

Q ss_pred             CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC
Q 041463           49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT  128 (356)
Q Consensus        49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  128 (356)
                      .+++|++|+++++.+..     ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++
T Consensus        39 ~l~~L~~L~l~~~~i~~-----l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~  108 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-----IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQS  108 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred             HcCCcCEEEeeCCCccC-----ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence            46778888888877662     22 46667778888888777764433  67777777777777777643  24666777


Q ss_pred             CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc
Q 041463          129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS  190 (356)
Q Consensus       129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  190 (356)
                      |++|++++|.+++ ++ .+..+++|+.|++++|.+.+. +. + ..++. |+.|++++|.+.
T Consensus       109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l-~~l~~-L~~L~l~~n~l~  164 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-L-AGLTN-LQYLSIGNAQVS  164 (308)
T ss_dssp             CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-G-GGCTT-CCEEECCSSCCC
T ss_pred             CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-c-cCCCC-ccEEEccCCcCC
Confidence            7777777777763 22 366667777777777766522 21 1 11222 555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=169.68  Aligned_cols=235  Identities=20%  Similarity=0.193  Sum_probs=171.5

Q ss_pred             CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccc--cCCCCCcEEEcccCccccccc----cc
Q 041463           49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLF--SNSSFLYILDMSNNSLSGSIP----ES  122 (356)
Q Consensus        49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~  122 (356)
                      ....++.+.+.++.+....-..+. .+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+....+    ..
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            445678888888766421000000 12235679999999999887887777  889999999999999885433    33


Q ss_pred             ccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccccc--C-CchhhcccccceeEEEcccCcccccCCCCcCC
Q 041463          123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN--I-PAWIGASMPGLLHILDLSHNDLSGFIPPRVGN  199 (356)
Q Consensus       123 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~--~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  199 (356)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  . +......++. |+.|++++|.++.. +...  
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~l-~~~~--  216 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMETP-TGVC--  216 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCCH-HHHH--
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCch-HHHH--
Confidence            45688999999999999877778888999999999999986532  1 1121123443 89999999987521 1110  


Q ss_pred             CCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcc---cccCeEEccCCcCcCCCCcC
Q 041463          200 LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSL---VHLGTLNLSHNHLVGKIPEE  276 (356)
Q Consensus       200 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~  276 (356)
                                                ...+..+++|+.|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..
T Consensus       217 --------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~  269 (310)
T 4glp_A          217 --------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG  269 (310)
T ss_dssp             --------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred             --------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence                                      0112455667779999999987766666555   69999999999999 67776


Q ss_pred             cCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          277 IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       277 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +.  ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       270 ~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          270 LP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             hc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            64  7999999999999943 43 6788999999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.1e-20  Score=157.08  Aligned_cols=115  Identities=22%  Similarity=0.272  Sum_probs=96.8

Q ss_pred             ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEE
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL  310 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  310 (356)
                      .+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            34456669999999987777888999999999999999996666678899999999999999997777789999999999


Q ss_pred             EcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCC-CC
Q 041463          311 NLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKK-CP  352 (356)
Q Consensus       311 ~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~-c~  352 (356)
                      ++++|++++.++.. ..++.|+.++       +.||||.|+ |+
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~-------l~~N~~~c~~~~  197 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTIT-------LFGNQFDCSRCE  197 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEE-------CCSCCBCTTSTT
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEE-------eeCCceeCCccc
Confidence            99999999888754 6777777655       456788888 54

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.7e-20  Score=159.65  Aligned_cols=124  Identities=18%  Similarity=0.248  Sum_probs=72.6

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      ++|++|++.+|.++. .+....+++|++|++++|.+.+     ++. +..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~-----~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITD-----LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             CCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCC-----Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            566666666666653 3333346666666666666652     222 55666666666666666532  24556666666


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      |++++|.+... + .+..+++|++|++++|.+++. +. +..+++|+.|++++|.+.
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence            66666666533 2 255666666666666666532 21 556666666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=3e-23  Score=196.28  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=66.5

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCC-ccCCc-CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYN-ELRGR-VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNL   78 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l   78 (356)
                      +++|++|+++++.+++..+..+...+++|++|++.+| .++.. .+... ++++|++|++++|.+++..+..++.....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            4567777777777766555555533477888888777 33321 22222 477788888887776654332333344456


Q ss_pred             ccccEEeccccc--cccc-ccccccCCCCCcEEEcccC
Q 041463           79 KQLITLVISNNN--LSGE-IPLLFSNSSFLYILDMSNN  113 (356)
Q Consensus        79 ~~L~~L~l~~~~--i~~~-~~~~~~~l~~L~~L~l~~~  113 (356)
                      ++|++|++++|.  +... ....+..+++|++|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            777777777775  2111 1222344577777777766

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=5.1e-19  Score=155.99  Aligned_cols=240  Identities=21%  Similarity=0.170  Sum_probs=136.9

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE-
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT-   83 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~-   83 (356)
                      ++++.++++++ .+|..+.   +++++|+|++|.++...+.++ ++++|++|+|++|.+.+.++   +..|..++++++ 
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~---~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE---ADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC---TTSBCSCTTCCEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC---hhHhhcchhhhhh
Confidence            45666667776 4565442   567777777777775555555 47777777777777654333   134566666654 


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecc-ccccccCccccCCC-CCcEEEecCC
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNN-YLSGELPLSLKNCT-FMESLDLGDN  161 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~-~L~~L~l~~~  161 (356)
                      +.+..|.+....+..|..+++|++|++++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            445556666555666777777777777777776555545555556666666553 44433333444443 4666777777


Q ss_pred             cccccCCchhhcccccceeEEEcccC-cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHN-DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL  240 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  240 (356)
                      .+. .++..++....  ++.+++.++ .++ .+|.                               ..|..+++|+.|++
T Consensus       165 ~i~-~i~~~~f~~~~--L~~l~l~~~n~l~-~i~~-------------------------------~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          165 GIQ-EIHNSAFNGTQ--LDELNLSDNNNLE-ELPN-------------------------------DVFHGASGPVILDI  209 (350)
T ss_dssp             CCC-EECTTSSTTEE--EEEEECTTCTTCC-CCCT-------------------------------TTTTTEECCSEEEC
T ss_pred             ccc-CCChhhccccc--hhHHhhccCCccc-CCCH-------------------------------HHhccCcccchhhc
Confidence            766 34443333222  666666543 333 2221                               12344455556777


Q ss_pred             cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCC
Q 041463          241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN  291 (356)
Q Consensus       241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n  291 (356)
                      ++|.++...+..   +.+|++|.+.++.-...+| .+..+++|+.+++.++
T Consensus       210 s~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          210 SRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            777776433322   3455555555544222455 3556667777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=2.9e-22  Score=189.46  Aligned_cols=310  Identities=13%  Similarity=0.077  Sum_probs=156.2

Q ss_pred             cccceEEEcccc-cccccCCchHHhhccCCcEeeccCCccCCcCCCCC-----CCCCCcEEecCCCcccCcCC-CCCCcc
Q 041463            2 QTELRTLVLNKA-RISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-----GFNFPATVDLSSNNFEGRLP-LCIPKS   74 (356)
Q Consensus         2 l~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~-~~~~~~   74 (356)
                      +++|++|++.+| .+++.....+...+++|++|++++|.+++.....+     .+++|++|++++|. . .++ ..+...
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l  206 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERL  206 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHH
Confidence            578999999998 56543233344334899999999998765433222     57799999999886 1 111 011112


Q ss_pred             cCCcccccEEecccc-cccccccccccCCC--------------------------------------------------
Q 041463           75 IGNLKQLITLVISNN-NLSGEIPLLFSNSS--------------------------------------------------  103 (356)
Q Consensus        75 ~~~l~~L~~L~l~~~-~i~~~~~~~~~~l~--------------------------------------------------  103 (356)
                      +..+++|++|++++| .+. ..+..+..++                                                  
T Consensus       207 ~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~  285 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY  285 (594)
T ss_dssp             HHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH
T ss_pred             HHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH
Confidence            234577888888776 222 1333333444                                                  


Q ss_pred             ----CCcEEEcccCccccccc-ccccCCCCCcEEEeeccccccc-cCccccCCCCCcEEEecC---------CcccccCC
Q 041463          104 ----FLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGE-LPLSLKNCTFMESLDLGD---------NNLSGNIP  168 (356)
Q Consensus       104 ----~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~---------~~l~~~~~  168 (356)
                          +|++|++++|.+.+... ..+..+++|++|.+++| +.+. ++.....+++|+.|++.+         +.+++...
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence                44444444444332111 11233444444444444 2111 111112344455555422         12221111


Q ss_pred             chhhcccccceeEEEcccCcccccCCCCcC-CCCCCcccCCC-----CCccCCCeeeeecCCccccccccccccEEeecC
Q 041463          169 AWIGASMPGLLHILDLSHNDLSGFIPPRVG-NLSDMKVEPPK-----SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS  242 (356)
Q Consensus       169 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  242 (356)
                      ..+...++. |+.|.+..+.+++.....+. .+++|+.+...     .....+....  .......+..+++|+.|++++
T Consensus       365 ~~l~~~~~~-L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          365 VSVSMGCPK-LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL--DIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHCTT-CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT--HHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHhchh-HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch--hhHHHHHHhhCCCccEEeecC
Confidence            111111222 55554444444322111111 12222221111     0000000000  000111245667888888876


Q ss_pred             CcccccCchhhhc-ccccCeEEccCCcCcCCCCcCc-CCCCCccEEEccCCcccccCCc-cccCcCCCCEEEcccCcccc
Q 041463          243 TNLSAEIPAELTS-LVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPP-SMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       243 ~~l~~~~~~~~~~-~~~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~~~~  319 (356)
                       .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++.
T Consensus       442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence             555444444444 6788888888888765443333 5578888888888888654333 44557888888888888753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.4e-19  Score=147.30  Aligned_cols=157  Identities=20%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCC
Q 041463          129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPP  208 (356)
Q Consensus       129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~  208 (356)
                      -+.++++++.++ .+|..+.  ..++.|++++|.+.+..+......++. |+.|++++|.+.+..+..+.          
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~----------   78 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFE----------   78 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTT-CCEEECCSSCCCEECTTTTT----------
T ss_pred             CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCC-CCEEECCCCcCCEECHHHhC----------
Confidence            357888888877 4565442  356788888888875444443343444 88888888877654443333          


Q ss_pred             CCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEc
Q 041463          209 KSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL  288 (356)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L  288 (356)
                                            .+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|+|
T Consensus        79 ----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           79 ----------------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             ----------------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             ----------------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence                                  3445555888888888777777888888888888888888666777888888888888


Q ss_pred             cCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463          289 SKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI  321 (356)
Q Consensus       289 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  321 (356)
                      ++|++++..|..|..+++|+.|++++|++.+..
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            888888766778888888888888888887553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.8e-19  Score=146.94  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463          235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY  314 (356)
Q Consensus       235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  314 (356)
                      |+.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        58 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence            34455555555544455555555555555555555533333445555555555555555544455555555555555555


Q ss_pred             CcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463          315 NNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       315 n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      |++++..+.. ..++.|+.++       +.+|||.|+|+
T Consensus       138 N~l~~~~~~~~~~l~~L~~L~-------L~~N~~~c~c~  169 (220)
T 2v9t_B          138 NKLQTIAKGTFSPLRAIQTMH-------LAQNPFICDCH  169 (220)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEE-------CCSSCEECSGG
T ss_pred             CcCCEECHHHHhCCCCCCEEE-------eCCCCcCCCCc
Confidence            5555554432 3344444332       23455555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.1e-18  Score=142.41  Aligned_cols=180  Identities=21%  Similarity=0.189  Sum_probs=148.3

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL   84 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L   84 (356)
                      +.++..++.++ .+|..+.   ++|++|++++|.+++..+..+ .+++|++|++++|.+++ ++   +..|..+++|++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~~~~l~~L~~L   81 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LP---NGVFNKLTSLTYL   81 (208)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CC---TTTTTTCTTCCEE
T ss_pred             CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cC---hhhcCCCCCcCEE
Confidence            46777888776 4554442   689999999999997776666 69999999999999874 22   3457889999999


Q ss_pred             ecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463           85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus        85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      ++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            99999998776777899999999999999999777777889999999999999999666666889999999999999876


Q ss_pred             ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCC
Q 041463          165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSD  202 (356)
Q Consensus       165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~  202 (356)
                      +..        + .++.|++..+.+.+.+|..++.+..
T Consensus       162 ~~~--------~-~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 CTC--------P-GIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCT--------T-TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cCC--------C-CHHHHHHHHHhCCceeeccCccccC
Confidence            432        2 2888899999998888888776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=1.8e-19  Score=159.54  Aligned_cols=115  Identities=26%  Similarity=0.243  Sum_probs=73.9

Q ss_pred             ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccc---cCcCCCCE
Q 041463          233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM---ASLIFMNH  309 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~  309 (356)
                      ++|+.|+|++|.+....+..|..+++|++|+|++|.|.+..+..|..+++|++|+|++|++++..+..|   ..+++|+.
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~  167 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML  167 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence            345557777777766556667777777777777777776666777777788888888887775444444   45777888


Q ss_pred             EEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463          310 LNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       310 L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      |+|++|++++..+.. ..++.+.     ...+.+.||||.|||.
T Consensus       168 L~L~~N~l~~l~~~~~~~l~~~~-----l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          168 LDLSSNKLKKLPLTDLQKLPAWV-----KNGLYLHNNPLECDCK  206 (361)
T ss_dssp             EECCSSCCCCCCHHHHHHSCHHH-----HTTEECCSSCEECCHH
T ss_pred             EECCCCCCCccCHHHhhhccHhh-----cceEEecCCCccCCcC
Confidence            888888777544332 3333210     1123456688888884

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=143.48  Aligned_cols=152  Identities=22%  Similarity=0.244  Sum_probs=91.5

Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463          106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL  184 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l  184 (356)
                      +.++++++.+. ..|..+.  ..+++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+.. ++. |+.|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~-L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASG-VNEILL   88 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTT-CCEEEC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCC-CCEEEC
Confidence            46667776666 3343332  345677777777664433 33566777777777777766333333322 333 677777


Q ss_pred             ccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEc
Q 041463          185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL  264 (356)
Q Consensus       185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L  264 (356)
                      ++|.+.+..+..                                +..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        89 s~N~l~~~~~~~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           89 TSNRLENVQHKM--------------------------------FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             CSSCCCCCCGGG--------------------------------GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCccCccCHhH--------------------------------hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            777665332222                                233444555777777776666666666777777777


Q ss_pred             cCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463          265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLS  294 (356)
Q Consensus       265 ~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~  294 (356)
                      ++|.+++..|..|..+++|++|++++|.+.
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            777776555666667777777777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=3.6e-18  Score=141.26  Aligned_cols=157  Identities=25%  Similarity=0.285  Sum_probs=97.1

Q ss_pred             CCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccC
Q 041463          128 TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP  207 (356)
Q Consensus       128 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~  207 (356)
                      ..+.++.+++.++ .+|..+.  ++|+.|++++|.+.+..+..+.. ++. |+.|++++|.+....+..           
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~-L~~L~L~~N~l~~i~~~~-----------   83 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS-LIN-LKELYLGSNQLGALPVGV-----------   83 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-CTT-CCEEECCSSCCCCCCTTT-----------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC-ccC-CcEEECCCCCCCCcChhh-----------
Confidence            3556677666666 4554333  66777777777776444443322 333 777777777664322222           


Q ss_pred             CCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEE
Q 041463          208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD  287 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  287 (356)
                                           +..+++|+.|+|++|.+.+..+..|..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        84 ---------------------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  141 (229)
T 3e6j_A           84 ---------------------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA  141 (229)
T ss_dssp             ---------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred             ---------------------cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence                                 233444555777777776555555666777777777777776 5666666677777777


Q ss_pred             ccCCcccccCCccccCcCCCCEEEcccCcccccCC
Q 041463          288 LSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP  322 (356)
Q Consensus       288 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  322 (356)
                      +++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            77777775555566667777777777777765544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=5.8e-18  Score=138.00  Aligned_cols=87  Identities=21%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEE
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL  310 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  310 (356)
                      .+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.       ..++.|+.|
T Consensus        98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L  170 (208)
T 2o6s_A           98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYL  170 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHH
T ss_pred             CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHH
Confidence            3344555777777777655666777888888888888887555556778888888888888765       345678888


Q ss_pred             EcccCcccccCCCC
Q 041463          311 NLSYNNLSGEIPNT  324 (356)
Q Consensus       311 ~l~~n~~~~~~~~~  324 (356)
                      +++.|++++.+|..
T Consensus       171 ~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          171 SEWINKHSGVVRNS  184 (208)
T ss_dssp             HHHHHHCTTTBBCT
T ss_pred             HHHHHhCCceeecc
Confidence            88888888887765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=7.9e-18  Score=144.38  Aligned_cols=84  Identities=24%  Similarity=0.340  Sum_probs=57.2

Q ss_pred             cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463           75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME  154 (356)
Q Consensus        75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  154 (356)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ + ..+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            34567777888887777633 2 36677777777777777774433  6677777777777777763 2 3366677777


Q ss_pred             EEEecCCccc
Q 041463          155 SLDLGDNNLS  164 (356)
Q Consensus       155 ~L~l~~~~l~  164 (356)
                      .|++++|.+.
T Consensus       116 ~L~L~~n~i~  125 (291)
T 1h6t_A          116 SLSLEHNGIS  125 (291)
T ss_dssp             EEECTTSCCC
T ss_pred             EEECCCCcCC
Confidence            7777777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.7e-17  Score=154.02  Aligned_cols=94  Identities=30%  Similarity=0.441  Sum_probs=48.1

Q ss_pred             CCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcE
Q 041463           52 FPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRF  131 (356)
Q Consensus        52 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  131 (356)
                      +|+.|++++|.+++ +|    ..+  .++|++|++++|.+. .+|   ..+++|++|++++|.+.. .|. +..  +|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp----~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~  124 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LP----DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH  124 (571)
T ss_dssp             TCSEEECCSSCCSC-CC----SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred             CccEEEeCCCCCCc-cC----HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence            56666666665552 22    222  245666666666655 333   234556666666655553 333 332  5555


Q ss_pred             EEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          132 LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       132 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      |++++|.+++ +|.   .+++|+.|++++|.+.
T Consensus       125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          125 LDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             EECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            5555555553 333   3455555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=9.7e-18  Score=135.38  Aligned_cols=153  Identities=18%  Similarity=0.177  Sum_probs=112.7

Q ss_pred             HhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCC
Q 041463           24 WQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS  103 (356)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~  103 (356)
                      ..+ ++|++|++++|.+. .++....+++|++|++++|.+..      +..+..+++|++|++++|.+.+..+..+..++
T Consensus        41 ~~l-~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           41 AQM-NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHH-HTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             hhc-CCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            444 78888888888887 44444468888888888886542      23677788888888888888766777788888


Q ss_pred             CCcEEEcccCcccccccccccCCCCCcEEEeeccc-cccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEE
Q 041463          104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY-LSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL  182 (356)
Q Consensus       104 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L  182 (356)
                      +|++|++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+.+ .+ .+ ..++. |+.|
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l-~~l~~-L~~L  186 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GI-EDFPK-LNQL  186 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TG-GGCSS-CCEE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hh-ccCCC-CCEE
Confidence            88888888888887677778888888888888887 55 344 67888888888888888764 33 22 22443 8888


Q ss_pred             EcccCccc
Q 041463          183 DLSHNDLS  190 (356)
Q Consensus       183 ~l~~~~l~  190 (356)
                      ++++|.+.
T Consensus       187 ~l~~N~i~  194 (197)
T 4ezg_A          187 YAFSQTIG  194 (197)
T ss_dssp             EECBC---
T ss_pred             EeeCcccC
Confidence            88888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=3e-17  Score=134.80  Aligned_cols=153  Identities=21%  Similarity=0.254  Sum_probs=92.6

Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcc
Q 041463          106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLS  185 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~  185 (356)
                      +.++++++.+. ..|..+.  ++++.|++++|.++...+..+..+++|+.|++++|.+.+                    
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--------------------   70 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--------------------   70 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence            45666666655 3343332  456666666666664444455556666666666665542                    


Q ss_pred             cCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463          186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS  265 (356)
Q Consensus       186 ~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~  265 (356)
                            ..+..+.                                .+++|+.|+|++|.+....+..|..+++|++|+++
T Consensus        71 ------~~~~~~~--------------------------------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           71 ------LAPDAFQ--------------------------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             ------ECTTTTT--------------------------------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ------cCHHHhh--------------------------------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence                  2222222                                22334446666666665455556666777777777


Q ss_pred             CCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          266 HNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       266 ~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      +|.+.+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            777775556667777777777777777776556666777777777777777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=1.6e-17  Score=154.25  Aligned_cols=114  Identities=28%  Similarity=0.363  Sum_probs=52.7

Q ss_pred             CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      +++.|++++|.+++ +|..+ .++|++|++++|.++ .    +|   ..+++|++|++++|.+++ +|. +..  +|++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~----ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-S----LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-C----CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred             CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-c----cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence            45555555555543 22221 245555555555544 1    22   123455555555555543 333 322  55555


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      ++++|.+.. .|.   .+++|++|++++|.+++ +|.   .+++|+.|++++|.+.
T Consensus       126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            555555543 222   34455555555555542 332   3344555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=8.2e-18  Score=157.78  Aligned_cols=84  Identities=24%  Similarity=0.338  Sum_probs=53.1

Q ss_pred             cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463           75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME  154 (356)
Q Consensus        75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  154 (356)
                      +..+++|+.|++++|.+... + .+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+ + ..+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence            34566677777777776532 2 36667777777777777664433  5666777777777776652 2 2566666666


Q ss_pred             EEEecCCccc
Q 041463          155 SLDLGDNNLS  164 (356)
Q Consensus       155 ~L~l~~~~l~  164 (356)
                      .|++++|.+.
T Consensus       113 ~L~Ls~N~l~  122 (605)
T 1m9s_A          113 SLSLEHNGIS  122 (605)
T ss_dssp             EEECTTSCCC
T ss_pred             EEEecCCCCC
Confidence            6666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.5e-17  Score=142.54  Aligned_cols=122  Identities=20%  Similarity=0.252  Sum_probs=83.0

Q ss_pred             CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEE
Q 041463           30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILD  109 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  109 (356)
                      +..+.+....+.+. ...-.+++|+.|++++|.+..     + ..+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        26 ~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-----~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~   96 (291)
T 1h6t_A           26 TIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-----V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF   96 (291)
T ss_dssp             HHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             HHHHHhcCCCcccc-cchhhcCcccEEEccCCCccc-----C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence            33444555444421 111246788888888887763     2 246677888888888888875444  77888888888


Q ss_pred             cccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       110 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      +++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.
T Consensus        97 l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A           97 LDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             CCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence            888887742  2377788888888888887742  45667777777777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2e-17  Score=146.45  Aligned_cols=176  Identities=22%  Similarity=0.168  Sum_probs=141.4

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      ++++++++.++ .+|..+.   +.+++|++++|.+++..+..+  ++++|++|++++|.+.+.    .+..|..+++|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI----SSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE----CTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc----ChhhccCCCCCCE
Confidence            57888999887 4666554   578999999999998777766  789999999999998742    2357888999999


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccc---cCCCCCcEEEecC
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL---KNCTFMESLDLGD  160 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~  160 (356)
                      |++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+   ..+++|+.|++++
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            9999999987777789999999999999999998888899999999999999999984333334   5689999999999


Q ss_pred             CcccccCCchhhcccccc-eeEEEcccCccc
Q 041463          161 NNLSGNIPAWIGASMPGL-LHILDLSHNDLS  190 (356)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~-L~~L~l~~~~l~  190 (356)
                      |.+. .++......++.. ++.|++.+|++.
T Consensus       173 N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          173 NKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence            9998 5554333334331 478999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=2.8e-17  Score=143.65  Aligned_cols=102  Identities=15%  Similarity=-0.005  Sum_probs=82.5

Q ss_pred             ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCcc-EEEccCCcccccCCccccCcCCCCE
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE-TLDLSKNKLSGSIPPSMASLIFMNH  309 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~  309 (356)
                      .+++|+.+++++|.++.....+|.++.+|++|++.+| +.......|.++++|+ .+++.+ .++...+..|.+|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            3567888999988888777788888889999999887 6656667888899998 999988 777677788899999999


Q ss_pred             EEcccCcccccCCCC-cccCcCCCcc
Q 041463          310 LNLSYNNLSGEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       310 L~l~~n~~~~~~~~~-~~l~~l~~~~  334 (356)
                      +++++|.+....+.. .+.++|+.++
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            999888888777755 6677776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=8.6e-17  Score=129.79  Aligned_cols=85  Identities=19%  Similarity=0.304  Sum_probs=67.2

Q ss_pred             ccccccEEeecCCcccccCchhhhcccccCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCE
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH  309 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  309 (356)
                      .+++|+.|++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..+++|++
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence            34456669999999887778888889999999999998 66 454 68889999999999999985 44 6788999999


Q ss_pred             EEcccCcccc
Q 041463          310 LNLSYNNLSG  319 (356)
Q Consensus       310 L~l~~n~~~~  319 (356)
                      |++++|++.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            9999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=9.5e-17  Score=150.59  Aligned_cols=145  Identities=21%  Similarity=0.266  Sum_probs=103.4

Q ss_pred             CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      .+..+.+..+.+.+. ...-.++.|+.|++++|.+..     ++ .+..+++|+.|++++|.+.+..+  +..+++|++|
T Consensus        22 ~l~~l~l~~~~i~~~-~~~~~L~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-----VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHTTCSCTTSE-ECHHHHTTCCCCBCTTCCCCC-----CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHhccCCCcccc-cchhcCCCCCEEECcCCCCCC-----Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            345566666665532 222357899999999998863     22 57789999999999999886554  8889999999


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND  188 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~  188 (356)
                      ++++|.+...  ..+..+++|+.|++++|.+.+  ...+..+++|+.|++++|.+.+.  ..+ ..++. |+.|++++|.
T Consensus        93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l-~~l~~-L~~L~Ls~N~  164 (605)
T 1m9s_A           93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVL-SRLTK-LDTLSLEDNQ  164 (605)
T ss_dssp             ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGG-GSCTT-CSEEECCSSC
T ss_pred             ECcCCCCCCC--hhhccCCCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhh-cccCC-CCEEECcCCc
Confidence            9999998842  367889999999999999874  24678888888888888887632  121 11222 5555555554


Q ss_pred             cc
Q 041463          189 LS  190 (356)
Q Consensus       189 l~  190 (356)
                      +.
T Consensus       165 l~  166 (605)
T 1m9s_A          165 IS  166 (605)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.7e-16  Score=131.09  Aligned_cols=154  Identities=23%  Similarity=0.291  Sum_probs=109.9

Q ss_pred             CcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463          105 LYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL  184 (356)
Q Consensus       105 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l  184 (356)
                      -+.++++++.+. ..|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+. .++......++. |+.|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~-L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ-LTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEEC
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCC-cCEEEC
Confidence            566778777776 4444332  67888888888888666777888888888888888876 444444343444 888888


Q ss_pred             ccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEc
Q 041463          185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL  264 (356)
Q Consensus       185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L  264 (356)
                      ++|.+.+..+..+                                ..+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus        96 s~N~l~~l~~~~~--------------------------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  142 (229)
T 3e6j_A           96 GTNQLTVLPSAVF--------------------------------DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL  142 (229)
T ss_dssp             CSSCCCCCCTTTT--------------------------------TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred             CCCcCCccChhHh--------------------------------CcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence            8887764333323                                34445666888888887 56667778888888888


Q ss_pred             cCCcCcCCCCcCcCCCCCccEEEccCCccccc
Q 041463          265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS  296 (356)
Q Consensus       265 ~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~  296 (356)
                      ++|.+.+..+..+..+++|+.|++++|.+...
T Consensus       143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            88888855556677888888888888887643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.7e-19  Score=168.24  Aligned_cols=101  Identities=30%  Similarity=0.346  Sum_probs=87.2

Q ss_pred             cccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccC-CccccCcCCCC
Q 041463          230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI-PPSMASLIFMN  308 (356)
Q Consensus       230 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~  308 (356)
                      ..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+
T Consensus       460 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence            45566777999999999 678899999999999999999994 66 8899999999999999999766 89999999999


Q ss_pred             EEEcccCcccccCCCCcc----cCcCCCc
Q 041463          309 HLNLSYNNLSGEIPNTNQ----FQTLNDP  333 (356)
Q Consensus       309 ~L~l~~n~~~~~~~~~~~----l~~l~~~  333 (356)
                      .|++++|++++.+|....    ++.|+.+
T Consensus       537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          537 LLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             EEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            999999999998886633    5666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=2.4e-16  Score=126.50  Aligned_cols=110  Identities=27%  Similarity=0.354  Sum_probs=60.2

Q ss_pred             ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463          235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY  314 (356)
Q Consensus       235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  314 (356)
                      ++.|++++|.+. .+|..|..+++|++|++++|.|++..+..|..+++|++|+|++|++++..+..|.++++|++|++++
T Consensus        33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            444555555555 3445555556666666666666544445555566666666666666655555555566666666666


Q ss_pred             CcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463          315 NNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       315 n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      |+++...+.. ..++.|+.++       +.+|||.|||+
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~-------L~~N~~~C~c~  143 (193)
T 2wfh_A          112 NDISVVPEGAFNDLSALSHLA-------IGANPLYCDCN  143 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEE-------CCSSCEECSGG
T ss_pred             CCCCeeChhhhhcCccccEEE-------eCCCCeecCCc
Confidence            6665544432 3444444332       23455666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=8.5e-17  Score=135.80  Aligned_cols=170  Identities=19%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             cccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEE
Q 041463           78 LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLD  157 (356)
Q Consensus        78 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  157 (356)
                      +.+++.++++++.+.+..  .+..+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence            455666666666665332  456677777777777776632 3 466677777777777777633 32 66777777777


Q ss_pred             ecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccE
Q 041463          158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL  237 (356)
Q Consensus       158 l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  237 (356)
                      +++|.+.+ ++....    ..|+.|++++|.+.+.  +.                                +..+++|+.
T Consensus        92 L~~N~l~~-l~~~~~----~~L~~L~L~~N~l~~~--~~--------------------------------l~~l~~L~~  132 (263)
T 1xeu_A           92 VNRNRLKN-LNGIPS----ACLSRLFLDNNELRDT--DS--------------------------------LIHLKNLEI  132 (263)
T ss_dssp             CCSSCCSC-CTTCCC----SSCCEEECCSSCCSBS--GG--------------------------------GTTCTTCCE
T ss_pred             CCCCccCC-cCcccc----CcccEEEccCCccCCC--hh--------------------------------hcCcccccE
Confidence            77777653 332221    2377777777765531  11                                234455666


Q ss_pred             EeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccccc
Q 041463          238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS  296 (356)
Q Consensus       238 L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~  296 (356)
                      |++++|.+++. + .+..+++|++|++++|.+.+.  ..+..+++|+.|++++|+++..
T Consensus       133 L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          133 LSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             EECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             EECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            77777777643 2 566777777788877777744  5667777777777777777744

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.8e-16  Score=127.24  Aligned_cols=133  Identities=24%  Similarity=0.280  Sum_probs=93.1

Q ss_pred             cEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccc
Q 041463          154 ESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLY  233 (356)
Q Consensus       154 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (356)
                      +.++++++.+. .+|..+..    .++.|++++|.+.+..+..                               .+..++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~-------------------------------~~~~l~   54 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDG-------------------------------LFGRLP   54 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSC-------------------------------SGGGCT
T ss_pred             CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCcc-------------------------------ccccCC
Confidence            45666666664 44443322    3677777777665332211                               134555


Q ss_pred             cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      +|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            66668888888887777778888888888888888886666677888888888888888887777788888888888888


Q ss_pred             cCcccccCC
Q 041463          314 YNNLSGEIP  322 (356)
Q Consensus       314 ~n~~~~~~~  322 (356)
                      +|++.+..+
T Consensus       135 ~N~l~c~c~  143 (192)
T 1w8a_A          135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            888876544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=1.9e-15  Score=127.52  Aligned_cols=169  Identities=20%  Similarity=0.259  Sum_probs=129.8

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      .+++.++++++.+++..  .+..+ ++|++|++++|.++. ++..-.+++|++|++++|.+++     ++. +..+++|+
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~L~~N~i~~-----~~~-l~~l~~L~   88 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQISD-----LSP-LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCSSCC
T ss_pred             HHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-chHHhhCCCCCEEECCCCccCC-----Chh-hccCCCCC
Confidence            45667778888887533  46666 899999999998884 4444468999999999998874     333 78899999


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN  162 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  162 (356)
                      +|++++|.+.+. +. +.. ++|++|++++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.
T Consensus        89 ~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           89 ELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCc
Confidence            999999998753 33 223 8899999999998853  3578899999999999999843  368889999999999999


Q ss_pred             ccccCCchhhcccccceeEEEcccCccccc
Q 041463          163 LSGNIPAWIGASMPGLLHILDLSHNDLSGF  192 (356)
Q Consensus       163 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  192 (356)
                      +.+.  ..+ ..++. |+.|++++|.+...
T Consensus       162 i~~~--~~l-~~l~~-L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          162 ITNT--GGL-TRLKK-VNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCBC--TTS-TTCCC-CCEEEEEEEEEECC
T ss_pred             Ccch--HHh-ccCCC-CCEEeCCCCcccCC
Confidence            8754  222 22443 89999999987643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=2e-15  Score=121.18  Aligned_cols=134  Identities=22%  Similarity=0.293  Sum_probs=106.4

Q ss_pred             CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEE
Q 041463           30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILD  109 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  109 (356)
                      -++++++++.++. +|..+ ..++++|++++|.+.+..+   ...+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        10 ~~~l~~s~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRGLKE-IPRDI-PLHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCC-CTTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCCCcCc-CccCC-CCCCCEEECCCCcCCccCC---ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            3677888887763 44332 2388888888888764211   02377888999999999999877788888999999999


Q ss_pred             cccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCC
Q 041463          110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIP  168 (356)
Q Consensus       110 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~  168 (356)
                      +++|.+....+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+....+
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999987777788889999999999999987778888899999999999998875544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.7e-16  Score=138.61  Aligned_cols=265  Identities=12%  Similarity=0.035  Sum_probs=133.9

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCC-cccccEEeccccccc--ccccccccCCCCCcEEEcccCcccccccccccC-
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGN-LKQLITLVISNNNLS--GEIPLLFSNSSFLYILDMSNNSLSGSIPESIGS-  125 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-  125 (356)
                      +..+++|.++++--...+     ..+.. +++|++|++++|.+.  .....   .++.++.+.+..+.   +...+|.+ 
T Consensus        24 ~~~l~~L~l~g~i~~~~~-----~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~   92 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDF-----RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNV   92 (329)
T ss_dssp             HHHCSEEEEEEEECHHHH-----HHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEE
T ss_pred             hCceeEEEEeccccHHHH-----HHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccc
Confidence            456777777754211100     12222 677888888888776  11111   11223333333332   22344555 


Q ss_pred             -------CCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcc----cccCC
Q 041463          126 -------LRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL----SGFIP  194 (356)
Q Consensus       126 -------l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l----~~~~~  194 (356)
                             +++|+.+.+.+ .++......|..+++|+.+++.+|.+. .++...+..+.. +..+.......    .....
T Consensus        93 ~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~-l~~l~~~~~~~~~~~~~i~~  169 (329)
T 3sb4_A           93 VNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVT-AIFIPLGSSDAYRFKNRWEH  169 (329)
T ss_dssp             ETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTC-EEEECTTCTHHHHTSTTTTT
T ss_pred             ccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCc-eEEecCcchhhhhccccccc
Confidence                   66777777766 555444555666677777777666655 333332222221 34443332111    00011


Q ss_pred             CCcCCCCCCcccCCCCCccCCCeeeeecCCccc----cccccccccEEeecCCcccccCchhh-hcccccCeEEccCCcC
Q 041463          195 PRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERK----YFTTLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHL  269 (356)
Q Consensus       195 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~L~~n~i  269 (356)
                      ..+..+..++..          .........+.    ..-...+++.+.+.+.-.. .....+ ..+++|+++++.+|.+
T Consensus       170 ~~f~~~~~L~~~----------i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i  238 (329)
T 3sb4_A          170 FAFIEGEPLETT----------IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNA  238 (329)
T ss_dssp             SCEEESCCCEEE----------EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCC
T ss_pred             ccccccccccee----------EEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCc
Confidence            112122222100          00000000000    0012344555666554222 111222 2367888888888887


Q ss_pred             cCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCC-EEEcccCcccccCCCC-cccCcCCCccccccCcc
Q 041463          270 VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMN-HLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLA  341 (356)
Q Consensus       270 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~  341 (356)
                      +......|.++++|+.|++.+| ++.....+|.++++|+ .+++.+ .++...+.. .+++.|+.+++..+++.
T Consensus       239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            7555567888888888888887 6656777788888888 888876 666555444 66777777763234443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.6e-18  Score=161.65  Aligned_cols=196  Identities=21%  Similarity=0.215  Sum_probs=129.3

Q ss_pred             CCcccccEEecccccccccccccccCCCCCcEEEcccCc-------------ccccccccccCCCCCcEEE-eecccccc
Q 041463           76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS-------------LSGSIPESIGSLRTLRFLV-LRNNYLSG  141 (356)
Q Consensus        76 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~l~~  141 (356)
                      ...++|+.|++++|.+. .+|..+..+++|+.|+++++.             .....|..+..+++|+.|+ ++.+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            34556666666666665 556666666666666665443             2223344455555565555 33332210


Q ss_pred             ccCc------ccc--CCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCcc
Q 041463          142 ELPL------SLK--NCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQH  213 (356)
Q Consensus       142 ~~~~------~l~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~  213 (356)
                       ++.      .+.  ....|+.|++++|.+. .+|. +. .++. |+.|++++|.+. .+|..+                
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~-~l~~-L~~L~Ls~N~l~-~lp~~~----------------  482 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE-QLLL-VTHLDLSHNRLR-ALPPAL----------------  482 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GG-GGTT-CCEEECCSSCCC-CCCGGG----------------
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-cc-cccc-CcEeecCccccc-ccchhh----------------
Confidence             000      000  0125888889888887 3554 33 3443 889999888876 445444                


Q ss_pred             CCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCC-CcCcCCCCCccEEEccCCc
Q 041463          214 EGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKI-PEEIGNFEWLETLDLSKNK  292 (356)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~L~~n~  292 (356)
                                      +.+++|+.|+|++|.+++ +| .+..+++|++|++++|.+++.. |..++.+++|+.|++++|+
T Consensus       483 ----------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          483 ----------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             ----------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ----------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence                            445566679999999986 56 7889999999999999999665 8999999999999999999


Q ss_pred             ccccCCcc---ccCcCCCCEEEc
Q 041463          293 LSGSIPPS---MASLIFMNHLNL  312 (356)
Q Consensus       293 i~~~~~~~---~~~l~~L~~L~l  312 (356)
                      +++..+..   +..+++|+.|++
T Consensus       545 l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          545 LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCccHHHHHHHHCcccCccCC
Confidence            99654432   334789998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.4e-15  Score=119.39  Aligned_cols=131  Identities=21%  Similarity=0.185  Sum_probs=101.6

Q ss_pred             cCCcEeeccCCccC-CcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCC
Q 041463           28 LTLDELDVAYNELR-GRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL  105 (356)
Q Consensus        28 ~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L  105 (356)
                      ++|++|++++|.++ +.++..+ .+++|++|++++|.+++     + ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            67888888888887 4555554 57888888888888763     2 467778888888888888886677777778889


Q ss_pred             cEEEcccCccccccc-ccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEEecCCccc
Q 041463          106 YILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       106 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~~~l~  164 (356)
                      ++|++++|.+.+... ..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999998888875432 677888889999999988884433   36788888999998888775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=3e-16  Score=150.73  Aligned_cols=186  Identities=22%  Similarity=0.214  Sum_probs=118.4

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcE-----eeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccC
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDE-----LDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIG   76 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~-----L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~   76 (356)
                      ++++.|+|..+.+.. .+..+... ..|+.     +++..+.+. ..+..+ .+..|+.|+|++|.+.     .++..+.
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~-l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-----~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQH-KKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-----NISANIF  244 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-----CCCGGGG
T ss_pred             CccceEEeeCCCCCc-chhhHhhc-CccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-----CCChhhc
Confidence            346788888888764 33333222 22222     223333333 334444 6899999999999987     3456666


Q ss_pred             CcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEE
Q 041463           77 NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESL  156 (356)
Q Consensus        77 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  156 (356)
                      .+++|++|+|++|.++ .+|..|..+++|++|++++|.+. ..|..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            8999999999999998 78888999999999999999999 67888999999999999999998 778889999999999


Q ss_pred             EecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCC
Q 041463          157 DLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNL  200 (356)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l  200 (356)
                      ++++|.+.+..|..+...... ...+++.+|.+.+.+|..+..+
T Consensus       322 ~L~~N~l~~~~p~~~~~~~~~-~~~l~l~~N~l~~~~p~~l~~l  364 (727)
T 4b8c_D          322 GVEGNPLEKQFLKILTEKSVT-GLIFYLRDNRPEIPLPHERRFI  364 (727)
T ss_dssp             ECTTSCCCSHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCC----
T ss_pred             eCCCCccCCCChHHHhhcchh-hhHHhhccCcccCcCcccccee
Confidence            999999987777665442221 3457788888887777655443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=8.2e-16  Score=147.71  Aligned_cols=90  Identities=29%  Similarity=0.332  Sum_probs=38.9

Q ss_pred             cccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhccc
Q 041463           96 PLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM  175 (356)
Q Consensus        96 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  175 (356)
                      +..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|.+. .+|..+.. +
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-C  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-G
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-C
Confidence            333444444555555554444 23333334445555555555444 44444445555555555555544 33443322 2


Q ss_pred             ccceeEEEcccCccc
Q 041463          176 PGLLHILDLSHNDLS  190 (356)
Q Consensus       176 ~~~L~~L~l~~~~l~  190 (356)
                      .. |+.|++++|.+.
T Consensus       293 ~~-L~~L~L~~N~l~  306 (727)
T 4b8c_D          293 FQ-LKYFYFFDNMVT  306 (727)
T ss_dssp             TT-CSEEECCSSCCC
T ss_pred             CC-CCEEECCCCCCC
Confidence            22 555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.7e-14  Score=113.13  Aligned_cols=91  Identities=22%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCC-CcCcCCCCCccEEEccCCcccccCC---ccccCcCC
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKI-PEEIGNFEWLETLDLSKNKLSGSIP---PSMASLIF  306 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~  306 (356)
                      .+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++
T Consensus        69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  148 (168)
T 2ell_A           69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ  148 (168)
T ss_dssp             CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred             cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence            4455677999999998767778888999999999999998432 2678889999999999999995544   47888999


Q ss_pred             CCEEEcccCcccccC
Q 041463          307 MNHLNLSYNNLSGEI  321 (356)
Q Consensus       307 L~~L~l~~n~~~~~~  321 (356)
                      |++|++++|++....
T Consensus       149 L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          149 LTYLDGYDREDQEAP  163 (168)
T ss_dssp             CCEETTEETTSCBCC
T ss_pred             CcEecCCCCChhhcc
Confidence            999999999887544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=5.3e-15  Score=117.14  Aligned_cols=138  Identities=20%  Similarity=0.217  Sum_probs=101.1

Q ss_pred             CcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccc
Q 041463          153 MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL  232 (356)
Q Consensus       153 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (356)
                      .+.++++++.+. .+|..+.    ..++.|++++|.+.+..+..                                +..+
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~----~~l~~L~l~~n~l~~~~~~~--------------------------------~~~l   51 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQSLPHGV--------------------------------FDKL   51 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC----TTCSEEECCSSCCCCCCTTT--------------------------------TTTC
T ss_pred             CCEEEecCCCCc-cCCCCCC----CCCcEEEeCCCcccEeCHHH--------------------------------hcCc
Confidence            355666666655 3443321    23777777777765333222                                2344


Q ss_pred             ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEc
Q 041463          233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNL  312 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  312 (356)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            55666999999988766667788899999999999998666667888999999999999999666667788999999999


Q ss_pred             ccCcccccCCCCccc
Q 041463          313 SYNNLSGEIPNTNQF  327 (356)
Q Consensus       313 ~~n~~~~~~~~~~~l  327 (356)
                      ++|++.+..|.+..+
T Consensus       132 ~~N~~~~~~~~l~~l  146 (177)
T 2o6r_A          132 HTNPWDCSCPRIDYL  146 (177)
T ss_dssp             CSSCBCCCHHHHHHH
T ss_pred             cCCCeeccCccHHHH
Confidence            999998877655433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=2.3e-14  Score=114.89  Aligned_cols=128  Identities=27%  Similarity=0.336  Sum_probs=100.7

Q ss_pred             cEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEc
Q 041463           31 DELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM  110 (356)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l  110 (356)
                      ++++++++.++. +|..+ .++|++|++++|.++     .+|..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        13 ~~l~~~~~~l~~-ip~~~-~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI-PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC-CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCCc-CCCCC-CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            567777777773 33322 367888888888876     34567888888888888888888777777888888999999


Q ss_pred             ccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccc
Q 041463          111 SNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG  165 (356)
Q Consensus       111 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  165 (356)
                      ++|.+....+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9988887777788888889999999998885555567888889999998888753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=5.2e-15  Score=113.64  Aligned_cols=126  Identities=20%  Similarity=0.183  Sum_probs=89.5

Q ss_pred             cCCcEeeccCCccC-CcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCC
Q 041463           28 LTLDELDVAYNELR-GRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL  105 (356)
Q Consensus        28 ~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L  105 (356)
                      +++++|++++|.++ +..+..+ .+++|++|++++|.+++.      ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            57888888888877 4455554 577888888888877632      456677888888888888776566667777888


Q ss_pred             cEEEcccCccccc-ccccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEEec
Q 041463          106 YILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLG  159 (356)
Q Consensus       106 ~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~  159 (356)
                      ++|++++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8888888877743 23567777778888888887774433   356777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=2.7e-15  Score=115.24  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             cccceEEEccccccc-ccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            2 QTELRTLVLNKARIS-DTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      .+++++|++++|.++ +.+|..+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++.    +|..+..+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG----LEVLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTC-TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC----THHHHHHCTT
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhc-CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch----HHHHhhhCCC
Confidence            367999999999998 6777767776 8999999999999866 4444799999999999999853    4466667999


Q ss_pred             ccEEeccccccccc-ccccccCCCCCcEEEcccCccccccc---ccccCCCCCcEEEeec
Q 041463           81 LITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIP---ESIGSLRTLRFLVLRN  136 (356)
Q Consensus        81 L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~  136 (356)
                      |++|++++|.+.+. .+..+..+++|++|++++|.+....+   ..+..+++|++|++++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999999864 34779999999999999999986655   4678899999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=1.6e-14  Score=113.46  Aligned_cols=108  Identities=21%  Similarity=0.284  Sum_probs=72.1

Q ss_pred             ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463          235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY  314 (356)
Q Consensus       235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  314 (356)
                      .+.++++++.++. +|..+  .++|++|++++|.|++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4557777777763 44333  26677777777777755566777777777777777777765666667777777777777


Q ss_pred             CcccccCCC-CcccCcCCCccccccCccccCCCCCCCCC
Q 041463          315 NNLSGEIPN-TNQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       315 n~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      |++++..+. +..++.|+.++       +.+|||.|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~-------L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIW-------LLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEE-------CCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEE-------eCCCCCCCCch
Confidence            777766664 35566665544       34567777774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=8.2e-13  Score=117.92  Aligned_cols=242  Identities=10%  Similarity=0.068  Sum_probs=135.4

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      ..++.+.+.. .++.....++.-.+|+.+.+..+ +. .++   ..+|.. .+|+.+.+.. .+.......|..+++|+.
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~-~I~---~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LK-SIG---DMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CC-EEC---TTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-cc-EEC---HHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            5677777754 34445555554347888887765 33 111   234555 3578887775 455455567788888888


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      +++..+.+......+|. ..+|+.+.+..+ +.......|..+++|+.+++..+ +. .++...+...  .++.+.+.. 
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~--~L~~i~lp~-  257 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRES--GITTVKLPN-  257 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTC--CCSEEEEET-
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccC--CccEEEeCC-
Confidence            88888777756556665 477888888744 55455567777888888888764 33 3333333332  377777743 


Q ss_pred             cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccc-----ccCchhhhcccccCeE
Q 041463          188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLS-----AEIPAELTSLVHLGTL  262 (356)
Q Consensus       188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~~~~~~~~~~~~L~~L  262 (356)
                      .+.......+..+++|+.                                +.+.++.+.     .....+|.++++|+.+
T Consensus       258 ~i~~I~~~aF~~c~~L~~--------------------------------l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l  305 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAE--------------------------------VTTYGSTFNDDPEAMIHPYCLEGCPKLARF  305 (401)
T ss_dssp             TCCEECTTTTTTCTTCCE--------------------------------EEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred             CccEEChhHhhCCCCCCE--------------------------------EEeCCccccCCcccEECHHHhhCCccCCeE
Confidence            344344445555544443                                444443332     2333445555555555


Q ss_pred             EccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463          263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       263 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  319 (356)
                      .+.+ .+.......|.++++|+.+.|..+ ++......|.++ +|+.+++++|....
T Consensus       306 ~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          306 EIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             EeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            5552 233233344555555555555333 333444455555 55555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.3e-13  Score=109.12  Aligned_cols=132  Identities=20%  Similarity=0.170  Sum_probs=92.3

Q ss_pred             CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEE
Q 041463           30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILD  109 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  109 (356)
                      .+.+++.++.++.. +.. ..++|++|++++|.+.+.    .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus         9 ~~~l~~~~~~l~~~-p~~-~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTG-IPSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTEEECCSSCCSSC-CTT-CCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCCccC-CCC-CCCCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            45666766666633 221 135777777777776631    123456777888888888887755556677788888888


Q ss_pred             cccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccC
Q 041463          110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI  167 (356)
Q Consensus       110 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~  167 (356)
                      +++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            8888887666666777888888888888887544445677888888888888876443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=3.5e-14  Score=111.84  Aligned_cols=107  Identities=21%  Similarity=0.312  Sum_probs=68.6

Q ss_pred             cEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccC
Q 041463          236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN  315 (356)
Q Consensus       236 ~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  315 (356)
                      +.++++++.+. .+|..+.  ++|++|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            44677777765 3443332  56777777777777555666777777777777777777555555667777777777777


Q ss_pred             cccccCCC-CcccCcCCCccccccCccccCCCCCCCCC
Q 041463          316 NLSGEIPN-TNQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       316 ~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      ++.+.++. +..++.|+.++       +.+|||.|+|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~-------L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIY-------LYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEE-------CCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEE-------eCCCCcccccc
Confidence            77766655 35566665544       33466666664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.50  E-value=3.1e-12  Score=114.20  Aligned_cols=269  Identities=8%  Similarity=0.009  Sum_probs=192.4

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      .++.+.+.+ .++..-..+|.+  .+|+.+.+..+ ++.....+|.-.+|+.+.+.. .+..    .-..+|..+++|+.
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~--~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~----I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRN--SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQ----LKEDIFYYCYNLKK  184 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCE----ECSSTTTTCTTCCE
T ss_pred             CccEEEECC-ccCEehHhhccc--CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccE----ehHHHhhCcccCCe
Confidence            455555554 343334455555  37999999776 666666677556899999986 3432    12367889999999


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      +++..|.+.......|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ ++......|.. .+|+.+.+..+ +
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-V  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-c
Confidence            99999988855555665 689999999855 76677888999999999999875 44345556666 78999999543 4


Q ss_pred             cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463          164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST  243 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  243 (356)
                      . .++...+..+.. |+.+.+.++.+......                           ......|..+++|+.+.+.. 
T Consensus       260 ~-~I~~~aF~~c~~-L~~l~l~~~~~~~~~~~---------------------------~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          260 T-NIASRAFYYCPE-LAEVTTYGSTFNDDPEA---------------------------MIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             C-EECTTTTTTCTT-CCEEEEESSCCCCCTTC---------------------------EECTTTTTTCTTCCEECCCT-
T ss_pred             c-EEChhHhhCCCC-CCEEEeCCccccCCccc---------------------------EECHHHhhCCccCCeEEeCC-
Confidence            4 455555555554 99999987654310000                           01233466777788899884 


Q ss_pred             cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcC-CCCEEEcccCccc
Q 041463          244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI-FMNHLNLSYNNLS  318 (356)
Q Consensus       244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~  318 (356)
                      .+......+|.++.+|+.+.+..+ ++......|.++ +|+.+++.+|.........|.+++ .++.|++..+.+.
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            476677788999999999999655 664667789898 999999999988877777888875 7889998877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=9.9e-14  Score=109.60  Aligned_cols=135  Identities=19%  Similarity=0.228  Sum_probs=97.2

Q ss_pred             ccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcc
Q 041463          147 LKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER  226 (356)
Q Consensus       147 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  226 (356)
                      +..+.+|+.|++++|.+. .++. +.. ....++.|++++|.+.+.  ..                              
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~-~~~~L~~L~Ls~N~l~~~--~~------------------------------   59 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGA-TLDQFDAIDFSDNEIRKL--DG------------------------------   59 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGG-GTTCCSEEECCSSCCCEE--CC------------------------------
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhh-cCCCCCEEECCCCCCCcc--cc------------------------------
Confidence            345566677777776665 3332 222 222377777777766532  22                              


Q ss_pred             ccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCc--CcCCCCCccEEEccCCcccccCCc----c
Q 041463          227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPE--EIGNFEWLETLDLSKNKLSGSIPP----S  300 (356)
Q Consensus       227 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~--~~~~~~~L~~L~L~~n~i~~~~~~----~  300 (356)
                        +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.  .+..+++|++|++++|+++ ..|.    .
T Consensus        60 --l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~  135 (176)
T 1a9n_A           60 --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYV  135 (176)
T ss_dssp             --CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHH
T ss_pred             --cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHH
Confidence              234556777999999998766566788999999999999997 5555  7888999999999999998 4555    4


Q ss_pred             ccCcCCCCEEEcccCccccc
Q 041463          301 MASLIFMNHLNLSYNNLSGE  320 (356)
Q Consensus       301 ~~~l~~L~~L~l~~n~~~~~  320 (356)
                      +..+++|+.|++++|.....
T Consensus       136 ~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          136 IYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             HHHCTTCSEETTEECCHHHH
T ss_pred             HHHCCccceeCCCcCCHHHH
Confidence            78899999999999987653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=5.3e-14  Score=111.19  Aligned_cols=128  Identities=22%  Similarity=0.221  Sum_probs=78.3

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCC-CCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCc
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFN-FPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLY  106 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~  106 (356)
                      ++|++|++++|.++. ++....+. +|++|++++|.+++     + ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        19 ~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            567777777776663 33333333 67777777776653     1 3456667777777777776644334446667777


Q ss_pred             EEEcccCcccccccc--cccCCCCCcEEEeeccccccccCcc----ccCCCCCcEEEecCCccc
Q 041463          107 ILDMSNNSLSGSIPE--SIGSLRTLRFLVLRNNYLSGELPLS----LKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       107 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~l~  164 (356)
                      +|++++|.+.. .+.  .+..+++|++|++++|.++ ..|..    +..+++|+.|++++|...
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777776653 332  5566667777777777666 34442    566666777766666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.6e-15  Score=122.44  Aligned_cols=128  Identities=21%  Similarity=0.208  Sum_probs=64.1

Q ss_pred             cceEEEcccccccccCCc------hHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCC
Q 041463            4 ELRTLVLNKARISDTIPD------WFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGN   77 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~   77 (356)
                      .++.++++.+.+.+..|.      .+..+ ++|++|++++|.+++ ++.+..+++|++|++++|.+.     .+|..+..
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l-~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-----~l~~~~~~   91 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-----KIENLDAV   91 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHT-TTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-----SCSSHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcC-CCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-----cccchhhc
Confidence            344444444444444443      45544 566666666665553 232223555666666655554     12333444


Q ss_pred             cccccEEecccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccc
Q 041463           78 LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLS  140 (356)
Q Consensus        78 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~  140 (356)
                      +++|++|++++|.+.+ .+ .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            4555555555555553 22 34455555555555555553221 23445555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=3.9e-13  Score=105.41  Aligned_cols=94  Identities=19%  Similarity=0.211  Sum_probs=79.6

Q ss_pred             cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      +++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            46679999999987778888899999999999999986666678899999999999999997667778999999999999


Q ss_pred             cCcccccCCCCccc
Q 041463          314 YNNLSGEIPNTNQF  327 (356)
Q Consensus       314 ~n~~~~~~~~~~~l  327 (356)
                      +|++....+.+..+
T Consensus       111 ~N~~~c~c~~l~~l  124 (170)
T 3g39_A          111 NNPWDCACSDILYL  124 (170)
T ss_dssp             SSCBCTTBGGGHHH
T ss_pred             CCCCCCCchhHHHH
Confidence            99998776655433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=8.7e-13  Score=103.80  Aligned_cols=95  Identities=21%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      +|+.|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            46668888888887777788888899999999999885555567888999999999999986666668888999999999


Q ss_pred             cCcccccCCCCcccC
Q 041463          314 YNNLSGEIPNTNQFQ  328 (356)
Q Consensus       314 ~n~~~~~~~~~~~l~  328 (356)
                      +|++....+.+..+.
T Consensus       114 ~N~~~c~~~~~~~l~  128 (174)
T 2r9u_A          114 NNPWDCECRDIMYLR  128 (174)
T ss_dssp             SSCBCTTBGGGHHHH
T ss_pred             CCCcccccccHHHHH
Confidence            999886655454433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.38  E-value=2.9e-11  Score=108.12  Aligned_cols=84  Identities=11%  Similarity=0.042  Sum_probs=53.6

Q ss_pred             cccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCC
Q 041463          228 YFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM  307 (356)
Q Consensus       228 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  307 (356)
                      .+..+.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++......|.++.+|+.+++..+ ++.....+|.+|++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3455666777766543 44345566777777777777543 44344556777777777777665 554566677777777


Q ss_pred             CEEEccc
Q 041463          308 NHLNLSY  314 (356)
Q Consensus       308 ~~L~l~~  314 (356)
                      +.+++..
T Consensus       369 ~~i~lp~  375 (394)
T 4fs7_A          369 KKVELPK  375 (394)
T ss_dssp             CEEEEEG
T ss_pred             CEEEECC
Confidence            7777754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=1e-14  Score=128.95  Aligned_cols=163  Identities=21%  Similarity=0.163  Sum_probs=77.7

Q ss_pred             ccceEEEcccccccccCCchHHhhc----cCCcEeeccCCccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCccc-
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLS----LTLDELDVAYNELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSI-   75 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~-   75 (356)
                      ++|++|++++|.++......+...+    ++|++|+|++|.+++.....+  .+.+|++|++++|.++......+...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3456666666666543333333321    356666666665543222222  244566666666655432111111111 


Q ss_pred             CCcccccEEeccccccccc----ccccccCCCCCcEEEcccCcccccc----cccccCCCCCcEEEeeccccccc----c
Q 041463           76 GNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGSI----PESIGSLRTLRFLVLRNNYLSGE----L  143 (356)
Q Consensus        76 ~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~----~  143 (356)
                      ...++|++|++++|.+++.    +...+..+++|++|++++|.+.+..    +..+...++|++|++++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            1245566666666655422    2223345555666666666554322    23344445566666666655432    1


Q ss_pred             CccccCCCCCcEEEecCCcccc
Q 041463          144 PLSLKNCTFMESLDLGDNNLSG  165 (356)
Q Consensus       144 ~~~l~~l~~L~~L~l~~~~l~~  165 (356)
                      ...+...++|+.|++++|.+.+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHhCCCCCEEeccCCCCCH
Confidence            2223344556666666665553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=2.1e-12  Score=113.50  Aligned_cols=106  Identities=25%  Similarity=0.288  Sum_probs=66.4

Q ss_pred             EeecCC-cccccCchhhhcccccCeEEccC-CcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccC
Q 041463          238 LDLSST-NLSAEIPAELTSLVHLGTLNLSH-NHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN  315 (356)
Q Consensus       238 L~L~~~-~l~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  315 (356)
                      ++++++ .+++ +|. +..+.+|++|+|++ |.+.+..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            566665 5653 444 66666777777775 6676555556777777777777777777666666777777777777777


Q ss_pred             cccccCCCCcccCcCCCccccccCccccCCCCCCCCC
Q 041463          316 NLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       316 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      ++++.++.......|+.++       +.+|+|.|+|+
T Consensus        91 ~l~~~~~~~~~~~~L~~l~-------l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELV-------LSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEE-------CCSSCCCCCGG
T ss_pred             ccceeCHHHcccCCceEEE-------eeCCCccCCCc
Confidence            7776655542222244333       33466777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=3.9e-14  Score=114.22  Aligned_cols=82  Identities=20%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCC-cCcCCCCCccEEEccCCcccccCCc----------cc
Q 041463          233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP-EEIGNFEWLETLDLSKNKLSGSIPP----------SM  301 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~----------~~  301 (356)
                      ++|+.|++++|.+.+ .+ .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|.          .+
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            344555555555553 22 45566667777777776663211 2456677777777777777644333          25


Q ss_pred             cCcCCCCEEEcccCccc
Q 041463          302 ASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       302 ~~l~~L~~L~l~~n~~~  318 (356)
                      ..+++|+.||  +++++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            6677777765  55554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=1.9e-13  Score=120.87  Aligned_cols=167  Identities=21%  Similarity=0.090  Sum_probs=85.6

Q ss_pred             CCCCcEEEcccCccccccccccc-----CCCCCcEEEeeccccccccCccc-cCCCCCcEEEecCCcccccCCchhhccc
Q 041463          102 SSFLYILDMSNNSLSGSIPESIG-----SLRTLRFLVLRNNYLSGELPLSL-KNCTFMESLDLGDNNLSGNIPAWIGASM  175 (356)
Q Consensus       102 l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~  175 (356)
                      ++.|++|++++|.+.......+.     ..++|++|++++|.+++.....+ ..+++|+.|++++|.+++.....+...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46688888888877643332222     22577777777777754322222 2345677777777776543333332211


Q ss_pred             ---ccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccC---
Q 041463          176 ---PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI---  249 (356)
Q Consensus       176 ---~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~---  249 (356)
                         ...++.|++++|.++......+                            ...+...++|+.|+|++|.+.+..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l----------------------------~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVL----------------------------MEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHH----------------------------HHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHH----------------------------HHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence               1226666666665542110000                            011223445555666666665422   


Q ss_pred             -chhhhcccccCeEEccCCcCcCCC----CcCcCCCCCccEEEccCCccccc
Q 041463          250 -PAELTSLVHLGTLNLSHNHLVGKI----PEEIGNFEWLETLDLSKNKLSGS  296 (356)
Q Consensus       250 -~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~L~~n~i~~~  296 (356)
                       +..+...++|++|+|++|.|++..    ...+...++|++|+|++|.+++.
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence             233444556666666666665321    12223345666666666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.10  E-value=2.9e-09  Score=95.05  Aligned_cols=295  Identities=12%  Similarity=0.048  Sum_probs=155.5

Q ss_pred             CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCccc-------C------c
Q 041463            1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFE-------G------R   66 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~-------~------~   66 (356)
                      ++.+|+++.+..+ ++..-..+|.++ ++|+.+++..+ ++.....++ ++..|+.+.+..+-..       +      .
T Consensus        69 ~c~~L~~i~lp~~-i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           69 GCRKVTEIKIPST-VREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             TCTTEEEEECCTT-CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCceEEEeCCC-ccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence            4678999999754 554445556666 89999999754 443444445 4777777666543110       0      0


Q ss_pred             CC----CCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccc
Q 041463           67 LP----LCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE  142 (356)
Q Consensus        67 ~~----~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  142 (356)
                      .+    ..-..+|..+++|+.+.+..+... .....|..+.+|+.+++..+ +......+|.++..|+.+.+..+...  
T Consensus       146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--  221 (394)
T 4fs7_A          146 IPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--  221 (394)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred             cCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--
Confidence            00    001134555666666666543221 33445666666666666554 33344445555555555544433221  


Q ss_pred             cCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCC----------CCc
Q 041463          143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK----------SVQ  212 (356)
Q Consensus       143 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~----------~~~  212 (356)
                      ..........|+.+.+.....  .+.......+.. ++.+.+..+... .....+..+..++.....          .+.
T Consensus       222 i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~-l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~  297 (394)
T 4fs7_A          222 LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTD-LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS  297 (394)
T ss_dssp             ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSS-CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred             eehhhcccCCCceEEECCCce--eccccccccccc-ceeEEcCCCcce-eeccccccccccceeccCceeeccccccccc
Confidence            111222233444444433211  111111111211 444444333211 122222222222221100          000


Q ss_pred             cCCCeeeee--cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC
Q 041463          213 HEGRLRVVT--KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK  290 (356)
Q Consensus       213 ~~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~  290 (356)
                      ....+....  .......|..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++......|.++++|+.+++..
T Consensus       298 ~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          298 SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             cccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            111111100  1112345778899999999754 66566788999999999999876 6646667899999999999986


Q ss_pred             CcccccCCccccCcCCCCEE
Q 041463          291 NKLSGSIPPSMASLIFMNHL  310 (356)
Q Consensus       291 n~i~~~~~~~~~~l~~L~~L  310 (356)
                      + ++ .....|.++++|+.+
T Consensus       376 ~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          376 R-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             G-GG-GGGGGBCTTCEEEEE
T ss_pred             C-CE-EhhheecCCCCCcEE
Confidence            5 33 334578888888765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=3.3e-10  Score=99.41  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             EEecCCC-cccCcCCCCCCcccCCcccccEEeccc-ccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 041463           55 TVDLSSN-NFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL  132 (356)
Q Consensus        55 ~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  132 (356)
                      .++++++ .++     .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+....+..|..+++|++|
T Consensus        12 ~v~~~~~n~l~-----~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           12 GLRCTRDGALD-----SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CEECCSSCCCT-----TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             EEEcCCCCCCC-----ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            4455555 554     2444 56666677777764 66665555667777777777777777766666666777777777


Q ss_pred             EeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       133 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      ++++|.++...+..+..++ |+.|++.+|.+.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            7777777643333344443 777777777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.04  E-value=3.2e-08  Score=88.33  Aligned_cols=103  Identities=10%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             ccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463          227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF  306 (356)
Q Consensus       227 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  306 (356)
                      ..|..+..|+.+.+.. .+......+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.|..+ ++.....+|.+|++
T Consensus       282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence            4566788899998864 455566678999999999999765 55455678999999999999765 66567788999999


Q ss_pred             CCEEEcccCcccccCCCCcccCcCCCcc
Q 041463          307 MNHLNLSYNNLSGEIPNTNQFQTLNDPS  334 (356)
Q Consensus       307 L~~L~l~~n~~~~~~~~~~~l~~l~~~~  334 (356)
                      |+.+++.++....  ........|+.+.
T Consensus       359 L~~i~~~~~~~~~--~~~~~~~~L~~i~  384 (394)
T 4gt6_A          359 LNNIEYSGSRSQW--NAISTDSGLQNLP  384 (394)
T ss_dssp             CCEEEESSCHHHH--HTCBCCCCC----
T ss_pred             CCEEEECCceeeh--hhhhccCCCCEEE
Confidence            9999999876542  1233334444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.99  E-value=3.1e-10  Score=99.54  Aligned_cols=165  Identities=13%  Similarity=0.129  Sum_probs=92.1

Q ss_pred             ccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhc-ccccceeEEEcccCcccccCCCCcCCCC
Q 041463          123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGA-SMPGLLHILDLSHNDLSGFIPPRVGNLS  201 (356)
Q Consensus       123 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~  201 (356)
                      +..+|+|+.|.++++.-. .++. + .+++|+.|++..+.+.......+.. .++. |+.|+++.+.-.......+   .
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~-L~~L~L~~~~~~~~~~~~~---~  240 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPN-LEKLVLYVGVEDYGFDGDM---N  240 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTT-CCEEEEECBCGGGTCCSCG---G
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCC-CcEEEEeccccccccchhH---H
Confidence            345667777777665211 2222 2 2667777777766654333223322 2333 7777764311000000000   0


Q ss_pred             CCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhh---cccccCeEEccCCcCcCC----CC
Q 041463          202 DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT---SLVHLGTLNLSHNHLVGK----IP  274 (356)
Q Consensus       202 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~---~~~~L~~L~L~~n~i~~~----~~  274 (356)
                      .+..                    ......+++|+.|+|.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++
T Consensus       241 ~l~~--------------------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~  300 (362)
T 2ra8_A          241 VFRP--------------------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL  300 (362)
T ss_dssp             GTGG--------------------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred             HHHH--------------------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence            0000                    00012467888899999888754333333   468899999999988753    23


Q ss_pred             cCcCCCCCccEEEccCCcccccCCccccC-cCCCCEEEcccCc
Q 041463          275 EEIGNFEWLETLDLSKNKLSGSIPPSMAS-LIFMNHLNLSYNN  316 (356)
Q Consensus       275 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~  316 (356)
                      ..+..+++|+.|++++|.+++.....+.. +  ..++++++++
T Consensus       301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            33355788999999999888654444433 2  3568888776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.93  E-value=8.8e-08  Score=85.45  Aligned_cols=286  Identities=9%  Similarity=0.105  Sum_probs=162.3

Q ss_pred             cceEEEcccccccccCCchHHhhccCCcEeeccCC---ccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcc
Q 041463            4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYN---ELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLK   79 (356)
Q Consensus         4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~   79 (356)
                      .|+++.+..+ ++..-..+|.++ .+|+.+.+..+   .++.....++ ++..|+.+.+..+- + .+   -...|..+.
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~-~-~I---~~~aF~~c~  137 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV-T-EI---DSEAFHHCE  137 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC-S-EE---CTTTTTTCT
T ss_pred             cCEEEEECCC-eeEEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc-c-ee---hhhhhhhhc
Confidence            4788888754 554455666666 78999988765   3554445555 57788877776542 1 11   124667778


Q ss_pred             cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463           80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG  159 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  159 (356)
                      +|+.+.+..+. .......|..+..|+.+.+..+ +......+|.. ..|+.+.+..+-.. .....+..+..+......
T Consensus       138 ~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~  213 (394)
T 4gt6_A          138 ELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSD  213 (394)
T ss_dssp             TCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEEC
T ss_pred             cccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccc
Confidence            88888876543 2244456777777777777654 33234444443 45666665443221 222333333333333322


Q ss_pred             CCc------------------------------------ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCC
Q 041463          160 DNN------------------------------------LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDM  203 (356)
Q Consensus       160 ~~~------------------------------------l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L  203 (356)
                      ...                                    +. .+....+..+.. ++.+.+..... ......+..+..|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~-~i~~~aF~~c~~-L~~i~lp~~~~-~I~~~aF~~c~~L  290 (394)
T 4gt6_A          214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVA-RIETHAFDSCAY-LASVKMPDSVV-SIGTGAFMNCPAL  290 (394)
T ss_dssp             CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEE-EECTTTTTTCSS-CCEEECCTTCC-EECTTTTTTCTTC
T ss_pred             ccccccccceeecccccccccccccccccccceEEcCCcce-Ecccceeeeccc-ccEEecccccc-eecCccccccccc
Confidence            110                                    00 111222222222 67777754432 2444556666666


Q ss_pred             cccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCc
Q 041463          204 KVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWL  283 (356)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L  283 (356)
                      +......     .+    .......|..+.+|+.+.+..+ ++.....+|.++.+|+++.+-.+ ++......|.++.+|
T Consensus       291 ~~i~l~~-----~i----~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          291 QDIEFSS-----RI----TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             CEEECCT-----TC----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             ccccCCC-----cc----cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence            5532221     00    1112345778899999999764 55566778999999999999654 554556789999999


Q ss_pred             cEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463          284 ETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL  317 (356)
Q Consensus       284 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  317 (356)
                      +.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            999999986542   3466778899988876544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=1.9e-09  Score=94.52  Aligned_cols=134  Identities=13%  Similarity=0.100  Sum_probs=61.2

Q ss_pred             CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccccccccc--CCCCCcEEEcccC--cc-cc----cc
Q 041463           49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFS--NSSFLYILDMSNN--SL-SG----SI  119 (356)
Q Consensus        49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~--~l~~L~~L~l~~~--~~-~~----~~  119 (356)
                      .+++|+.|+++++.-.     .++. + .+++|+.|++..+.+.......+.  .+++|++|++..+  .. .+    ..
T Consensus       170 ~~P~L~~L~L~g~~~l-----~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-----SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             TCTTCCEEEEECCBTC-----BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             cCCCCcEEEEeCCCCc-----eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            3566666666655211     1111 2 256666666666555432222222  4566666665421  10 00    00


Q ss_pred             cccc--cCCCCCcEEEeeccccccccCccc---cCCCCCcEEEecCCcccccCCchhhc---ccccceeEEEcccCccc
Q 041463          120 PESI--GSLRTLRFLVLRNNYLSGELPLSL---KNCTFMESLDLGDNNLSGNIPAWIGA---SMPGLLHILDLSHNDLS  190 (356)
Q Consensus       120 ~~~~--~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~  190 (356)
                      ...+  ..+++|++|.+.+|.+.+..+..+   ..+++|++|+++.|.+.+.....+..   .++ .|+.|+++.|.+.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~  320 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNYLS  320 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCSBBCC
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCCCcCC
Confidence            1111  135666666666666543222222   13456666666666655432222211   122 2666666666544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.77  E-value=1.2e-06  Score=77.64  Aligned_cols=286  Identities=7%  Similarity=-0.014  Sum_probs=160.2

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      .+|+.+.+.. .++..-..+|.++ .+|+.+.+..+ ++.....++.-.+|+.+.+..+ +. .+.   ..+|.. .+|+
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C-~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~-~I~---~~aF~~-~~L~  116 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSC-YNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VK-KFG---DYVFQG-TDLD  116 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CC-EEC---TTTTTT-CCCS
T ss_pred             cCCEEEEeCC-CccChHHHHhhCC-CCCCEEEeCCc-ceEechhhhcCCCCceEECCce-ee-Eec---cceecc-CCcc
Confidence            4677887764 4554445556665 89999999754 6656666675457888887654 22 111   133443 4788


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccc------------ccCccccCC
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG------------ELPLSLKNC  150 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------~~~~~l~~l  150 (356)
                      .+.+..+-.. .....|..+ .++.+.+..+ +......++..+.+++.+.+.......            .....+...
T Consensus       117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            8888765321 333344443 5666665543 333555667777777777765432210            111122333


Q ss_pred             CCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccc
Q 041463          151 TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT  230 (356)
Q Consensus       151 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
                      ..+..+.+.....  .......... ..++.+.+..+ +.......+..+..|+.......         ........+.
T Consensus       194 ~~~~~~~~~~~~~--~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~---------v~~I~~~aF~  260 (379)
T 4h09_A          194 KTGTEFTIPSTVK--TVTAYGFSYG-KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN---------VTSIGSFLLQ  260 (379)
T ss_dssp             CCCSEEECCTTCC--EECTTTTTTC-SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT---------CCEECTTTTT
T ss_pred             cccccccccccee--EEeecccccc-cccceeeeccc-eeEEccccccCCccceEEEcCCC---------ccEeCccccc
Confidence            4445544433321  1111111112 22566665433 22233344444444443211100         0011223456


Q ss_pred             ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEE
Q 041463          231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL  310 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  310 (356)
                      .+.+|+.+.+..+ +......+|.++.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.....+|.+|.+|+.+
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI  338 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred             eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence            6677777777553 44455567788888888888887777555667888888888888754 555666778888888888


Q ss_pred             EcccC
Q 041463          311 NLSYN  315 (356)
Q Consensus       311 ~l~~n  315 (356)
                      .+..+
T Consensus       339 ~ip~~  343 (379)
T 4h09_A          339 SYPKS  343 (379)
T ss_dssp             CCCTT
T ss_pred             EECCc
Confidence            87543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.63  E-value=2.1e-05  Score=69.51  Aligned_cols=296  Identities=9%  Similarity=0.038  Sum_probs=176.3

Q ss_pred             hHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccccccccc
Q 041463           22 WFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFS  100 (356)
Q Consensus        22 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~  100 (356)
                      ++... .+|+.+.+.. .++.....+| ++.+|+.+.+..+ ++ .+.   ..+|..+ +|+.+.+..+ +.......|.
T Consensus        41 ~~~~~-~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig---~~aF~~c-~l~~i~~~~~-l~~I~~~aF~  111 (379)
T 4h09_A           41 WYKDR-DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIG---DGAFADT-KLQSYTGMER-VKKFGDYVFQ  111 (379)
T ss_dssp             TGGGG-GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EEC---TTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred             ccccc-cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-Eec---hhhhcCC-CCceEECCce-eeEeccceec
Confidence            34444 7899999975 4665666667 6899999999755 33 222   2456665 5777766543 3323344555


Q ss_pred             CCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhccc-----
Q 041463          101 NSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM-----  175 (356)
Q Consensus       101 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-----  175 (356)
                      . .+|+.+.+..+ +......+|.+. +++.+.+..+ ++......+..+..++...+.................     
T Consensus       112 ~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (379)
T 4h09_A          112 G-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL  187 (379)
T ss_dssp             T-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred             c-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence            4 48999999875 333445556554 6776666544 3324455677788888888765432211100000000     


Q ss_pred             -----ccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCc
Q 041463          176 -----PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP  250 (356)
Q Consensus       176 -----~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  250 (356)
                           ...+..+.+.... .......+.....++......     ..    .......+..+..|+.+.+..+ ++....
T Consensus       188 ~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~-----~~----~~i~~~~f~~~~~L~~i~lp~~-v~~I~~  256 (379)
T 4h09_A          188 ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITS-----GV----TTLGDGAFYGMKALDEIAIPKN-VTSIGS  256 (379)
T ss_dssp             EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCT-----TC----CEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred             ccccccccccccccccce-eEEeecccccccccceeeecc-----ce----eEEccccccCCccceEEEcCCC-ccEeCc
Confidence                 0012233222211 112222333333333211110     00    0112234567788999988765 555666


Q ss_pred             hhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCc
Q 041463          251 AELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQT  329 (356)
Q Consensus       251 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~  329 (356)
                      .+|..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.++.+|+.+++..+ ++..-... ...+.
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            78888899999999654 44355568899999999999999998778889999999999999754 55443333 55677


Q ss_pred             CCCccccccCccccC
Q 041463          330 LNDPSIYEGNLALCG  344 (356)
Q Consensus       330 l~~~~~~~~~~~~~~  344 (356)
                      |+.+. +-.++...|
T Consensus       335 L~~i~-ip~~v~~I~  348 (379)
T 4h09_A          335 LSTIS-YPKSITLIE  348 (379)
T ss_dssp             CCCCC-CCTTCCEEC
T ss_pred             CCEEE-ECCccCEEc
Confidence            77766 444554443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.61  E-value=4.9e-09  Score=81.10  Aligned_cols=84  Identities=11%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             ccccEEeecCCcccccCchhhhcccccCeEEccCCc-CcCCCCcCcCCC----CCccEEEccCC-cccccCCccccCcCC
Q 041463          233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH-LVGKIPEEIGNF----EWLETLDLSKN-KLSGSIPPSMASLIF  306 (356)
Q Consensus       233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~----~~L~~L~L~~n-~i~~~~~~~~~~l~~  306 (356)
                      ..|+.|++++|.+++.....+.++++|++|+|++|. |++.....++.+    ++|++|+|++| +||+.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999999987766778899999999999996 776554555554    47999999999 599777777888999


Q ss_pred             CCEEEcccCc
Q 041463          307 MNHLNLSYNN  316 (356)
Q Consensus       307 L~~L~l~~n~  316 (356)
                      |++|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999996

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=3.6e-09  Score=83.81  Aligned_cols=113  Identities=12%  Similarity=0.148  Sum_probs=81.2

Q ss_pred             cCCcEeeccCC-ccCCcCCC----CC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc----ccc
Q 041463           28 LTLDELDVAYN-ELRGRVPN----SL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPL   97 (356)
Q Consensus        28 ~~L~~L~l~~~-~~~~~~~~----~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~   97 (356)
                      +.|++|+|++| .+.+....    .+ ..++|++|+|++|.+.......+...+...+.|++|++++|.+.+.    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            68899999888 77643222    22 4678999999999886543323344555667899999999988743    345


Q ss_pred             cccCCCCCcEEEc--ccCcccccc----cccccCCCCCcEEEeeccccc
Q 041463           98 LFSNSSFLYILDM--SNNSLSGSI----PESIGSLRTLRFLVLRNNYLS  140 (356)
Q Consensus        98 ~~~~l~~L~~L~l--~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~  140 (356)
                      .+...+.|++|++  ++|.+.+..    ...+...++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5677788999999  888887543    334455688999999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=1.2e-08  Score=80.80  Aligned_cols=114  Identities=15%  Similarity=0.106  Sum_probs=57.3

Q ss_pred             CCCCcEEecCCC-cccCcCCCCCCcccCCcccccEEeccccccccc----ccccccCCCCCcEEEcccCccccc----cc
Q 041463           50 FNFPATVDLSSN-NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGS----IP  120 (356)
Q Consensus        50 ~~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~  120 (356)
                      .+.|++|++++| .+.......+...+...++|++|++++|.+.+.    +...+...+.|++|++++|.+.+.    ..
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            566666777666 554322212233444556666666666665432    122334445566666666665532    22


Q ss_pred             ccccCCCCCcEEEe--eccccccc----cCccccCCCCCcEEEecCCcc
Q 041463          121 ESIGSLRTLRFLVL--RNNYLSGE----LPLSLKNCTFMESLDLGDNNL  163 (356)
Q Consensus       121 ~~~~~l~~L~~L~l--~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l  163 (356)
                      ..+...++|++|++  ++|.+.+.    +...+...++|+.|++++|.+
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            33444455666666  55555432    122333345555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=4.6e-08  Score=81.46  Aligned_cols=79  Identities=24%  Similarity=0.302  Sum_probs=57.4

Q ss_pred             hcccccCeEEccCCcCcC--CCCcCcCCCCCccEEEccCCcccccCCccccCcC--CCCEEEcccCcccccCCC------
Q 041463          254 TSLVHLGTLNLSHNHLVG--KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI--FMNHLNLSYNNLSGEIPN------  323 (356)
Q Consensus       254 ~~~~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~------  323 (356)
                      ..+++|+.|+|++|.+.+  .++..+..+++|+.|+|++|++++.  ..+..+.  +|++|++++|++.+..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            557889999999998875  2345556788999999999988854  2234444  889999999998876653      


Q ss_pred             --CcccCcCCCcc
Q 041463          324 --TNQFQTLNDPS  334 (356)
Q Consensus       324 --~~~l~~l~~~~  334 (356)
                        ...+++|+.++
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence              25667776655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=1.3e-07  Score=73.14  Aligned_cols=84  Identities=7%  Similarity=0.052  Sum_probs=53.6

Q ss_pred             ccccEEecccccccccccccccCCCCCcEEEcccCc-ccccccccccCC----CCCcEEEeeccc-cccccCccccCCCC
Q 041463           79 KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS-LSGSIPESIGSL----RTLRFLVLRNNY-LSGELPLSLKNCTF  152 (356)
Q Consensus        79 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-l~~~~~~~l~~l~~  152 (356)
                      .+|+.|++++|.+++.....+..+++|++|++++|. +++..-..++.+    ++|++|++++|. +++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            456777777776665555556667777777777774 555444445443    357777777764 66544455666777


Q ss_pred             CcEEEecCCc
Q 041463          153 MESLDLGDNN  162 (356)
Q Consensus       153 L~~L~l~~~~  162 (356)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=6.9e-07  Score=74.33  Aligned_cols=81  Identities=23%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             cccccccEEeecCCccccc--CchhhhcccccCeEEccCCcCcCCCCcCcCCCC--CccEEEccCCcccccCCc------
Q 041463          230 TTLYLVNLLDLSSTNLSAE--IPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE--WLETLDLSKNKLSGSIPP------  299 (356)
Q Consensus       230 ~~~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~------  299 (356)
                      ..+++|+.|+|++|.+.+.  ++..+..+++|+.|+|++|.|.+.  ..+..+.  +|+.|+|++|.+++..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            4678999999999999873  346677899999999999999854  2333333  899999999999876552      


Q ss_pred             -cccCcCCCCEEEc
Q 041463          300 -SMASLIFMNHLNL  312 (356)
Q Consensus       300 -~~~~l~~L~~L~l  312 (356)
                       .+..+|+|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             4667899998863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.96  E-value=8.1e-06  Score=60.13  Aligned_cols=56  Identities=18%  Similarity=0.178  Sum_probs=32.0

Q ss_pred             eEEccCCcCc-CCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463          261 TLNLSHNHLV-GKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       261 ~L~L~~n~i~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      .++-+++.++ ..+|..+  -++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 2344332  125677777777776555556666666666666655554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.65  E-value=5.7e-06  Score=65.16  Aligned_cols=112  Identities=12%  Similarity=0.056  Sum_probs=65.7

Q ss_pred             cCCcEeeccCC-ccCCcC----CCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc----ccc
Q 041463           28 LTLDELDVAYN-ELRGRV----PNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPL   97 (356)
Q Consensus        28 ~~L~~L~l~~~-~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~   97 (356)
                      +.|++|+|+++ .+.+..    .+.+ .-+.|+.|+|++|.+.......+.+.+..-+.|+.|+|++|.|.+.    +..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            46777777764 554321    1222 3567777777777776544434445555566778888888877633    223


Q ss_pred             cccCCCCCcEEEcccC---ccccc----ccccccCCCCCcEEEeecccc
Q 041463           98 LFSNSSFLYILDMSNN---SLSGS----IPESIGSLRTLRFLVLRNNYL  139 (356)
Q Consensus        98 ~~~~l~~L~~L~l~~~---~~~~~----~~~~~~~l~~L~~L~l~~~~l  139 (356)
                      .+..-..|++|+++++   .+.+.    ....+..-+.|+.|+++.+.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            4555566888888754   33322    223344456788888776544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=6.5e-05  Score=59.14  Aligned_cols=87  Identities=15%  Similarity=0.098  Sum_probs=41.2

Q ss_pred             CCCCcEEecCCC-cccCcCCCCCCcccCCcccccEEecccccccccc----cccccCCCCCcEEEcccCccccccc----
Q 041463           50 FNFPATVDLSSN-NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEI----PLLFSNSSFLYILDMSNNSLSGSIP----  120 (356)
Q Consensus        50 ~~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~----  120 (356)
                      -+.|++|+++++ .+.......+.+.+..-+.|+.|+|++|.+.+..    ...+..-+.|++|+|++|.|.+...    
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            356666666654 4432221122334444555666666666654322    2223344556666666665543221    


Q ss_pred             ccccCCCCCcEEEeec
Q 041463          121 ESIGSLRTLRFLVLRN  136 (356)
Q Consensus       121 ~~~~~l~~L~~L~l~~  136 (356)
                      .++..-..|++|.+++
T Consensus       120 ~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHTTTTCCCSEEECCC
T ss_pred             HHHhhCCceeEEECCC
Confidence            2233334455555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.01  E-value=0.0016  Score=47.63  Aligned_cols=57  Identities=26%  Similarity=0.352  Sum_probs=42.9

Q ss_pred             cEEeecCCccc-ccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463          236 NLLDLSSTNLS-AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS  294 (356)
Q Consensus       236 ~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~  294 (356)
                      ..++.++..++ ..+|..+.  ++|++|+|++|.|+...+..|..+++|+.|+|.+|...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36888888876 23444332  46899999999998555667788899999999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.5 bits (215), Expect = 4e-20
 Identities = 82/294 (27%), Positives = 121/294 (41%), Gaps = 39/294 (13%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN-NLSGEIPLLFSNSSFLYILDMSNNSL 115
           DLS  N     P  IP S+ NL  L  L I    NL G IP   +  + L+ L +++ ++
Sbjct: 56  DLSGLNLPKPYP--IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 116 SGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM 175
           SG+IP+ +  ++TL  L    N LSG LP S+ +   +  +    N +SG IP   G+  
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 176 PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLV 235
             L   + +S N L+G I                                    T   L 
Sbjct: 174 K-LFTSMTISRNRLTGKI----------------------------------PPTFANLN 198

Query: 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG 295
                 S N+     + L              + +     ++G  + L  LDL  N++ G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 296 SIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPK 349
           ++P  +  L F++ LN+S+NNL GEIP     Q   D S Y  N  LCG PLP 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF-DVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 6e-10
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 86  ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPL 145
           + NN + G +P   +   FL+ L++S N+L G IP+  G+L+        NN      PL
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

Query: 146 SLKNCT 151
               CT
Sbjct: 310 P--ACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            +DL +N   G     +P+ +  LK L +L +S NNL GEIP    N     +   +NN 
Sbjct: 248 GLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

Query: 115 LSGSIP 120
                P
Sbjct: 303 CLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 22  WFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80
               LS  L+ LD+  N + G +P  L    F  ++++S NN  G +P       GNL++
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-----QGGNLQR 292

Query: 81  LITLVISNNNLSGEIPL 97
                 +NN      PL
Sbjct: 293 FDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 10  LNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPL 69
           L   RI  T+P    QL   L  L+V++N L G +P             ++N      PL
Sbjct: 251 LRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 5e-16
 Identities = 46/217 (21%), Positives = 75/217 (34%), Gaps = 26/217 (11%)

Query: 99  FSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL 158
            +  + L  L  +NN +S   P  I +   L  L L  N L      +L + T +  LDL
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLR 218
            +N +S   P          L  L L  N +S   P                        
Sbjct: 249 ANNQISNLAPLSGLTK----LTELKLGANQISNISPL------------AGLTALTNLEL 292

Query: 219 VVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIG 278
              +  +    + L  +  L L   N+S   P  ++SL  L  L  ++N +       + 
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 279 NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN 315
           N   +  L    N++S   P  +A+L  +  L L+  
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 8e-10
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 35/193 (18%)

Query: 22  WFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81
                   L+ L    N++    P  +  N    + L+ N  +         ++ +L  L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLD-ELSLNGNQLKD------IGTLASLTNL 243

Query: 82  ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP--------------------E 121
             L ++NN +S   P   S  + L  L +  N +S   P                     
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 122 SIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHI 181
            I +L+ L +L L  N +S   P+S  + T ++ L   +N +S    + +  ++   ++ 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLA-NLTN-INW 355

Query: 182 LDLSHNDLSGFIP 194
           L   HN +S   P
Sbjct: 356 LSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 4e-08
 Identities = 45/255 (17%), Positives = 91/255 (35%), Gaps = 13/255 (5%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
            L + +  V+   N++  +    ++   +  L      +  SI + +  L  L  +   N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 75

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPR 196
           N L+   PL   N T +  + + +N ++   P     ++ GL    +   +         
Sbjct: 76  NQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 197 VGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS---TNLSAEIPAEL 253
           +  L              G   +       +      L NL  L     ++      + L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 254 TSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313
             L +L +L  ++N +    P  I     L+ L L+ N+L      ++ASL  +  L+L+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 314 YNNLSGEIPNTNQFQ 328
            N +S   P +   +
Sbjct: 250 NNQISNLAPLSGLTK 264

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 22  WFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81
                   L  L + +N +    P S        +  ++N            S+ NL  +
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISPVS-SLTKLQRLFFANNKVSD------VSSLANLTNI 353

Query: 82  ITLVISNNNLSGEIPLLFSNSSFLYILDMSNN 113
             L   +N +S   PL  +N + +  L +++ 
Sbjct: 354 NWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 47/273 (17%), Positives = 89/273 (32%), Gaps = 25/273 (9%)

Query: 73  KSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL 132
             +  L  L  +  SNN L+   P    N + L  + M+NN ++   P +  +  T   L
Sbjct: 60  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF 192
                     L           S +   +  + +    +     G          +L+  
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 193 IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE 252
               + +     +     + +   L + T            L NL +LS      +    
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKDIGT 236

Query: 253 LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP-------------- 298
           L SL +L  L+L++N +    P  +     L  L L  N++S   P              
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 299 ------PSMASLIFMNHLNLSYNNLSGEIPNTN 325
                   +++L  + +L L +NN+S   P ++
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 1e-15
 Identities = 57/293 (19%), Positives = 99/293 (33%), Gaps = 22/293 (7%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            V  S    E ++P  +P           L + NN ++      F N   L+ L + NN 
Sbjct: 14  VVQCSDLGLE-KVPKDLPPD------TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 115 LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGAS 174
           +S   P +   L  L  L L  N L     L  K    ++ L + +N ++    +     
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 175 MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYL 234
              ++  L  +    SG        +  +             +  + +G           
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----ITTIPQG-------LPPS 172

Query: 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294
           +  L L    ++    A L  L +L  L LS N +       + N   L  L L+ NKL 
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

Query: 295 GSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPL 347
             +P  +A   ++  + L  NN+S    N       N        ++L  +P+
Sbjct: 233 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 7e-12
 Identities = 39/291 (13%), Positives = 83/291 (28%), Gaps = 25/291 (8%)

Query: 26  LSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLV 85
           L      LD+  N++          N      L       ++    P +   L +L  L 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFK-NLKNLHTL--ILINNKISKISPGAFAPLVKLERLY 85

Query: 86  ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPL 145
           +S N L      +      L + +     +  S+   +  +  +  L       SG    
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENG 144

Query: 146 SLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKV 205
           + +    +  + + D N++      I   +P  L  L L  N ++      +  L+++  
Sbjct: 145 AFQGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 206 EPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265
                             +       L    L          ++P  L    ++  + L 
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL---------VKVPGGLADHKYIQVVYLH 250

Query: 266 HNHL------VGKIPEEIGNFEWLETLDLSKNKLS-GSIPPSMASLIFMNH 309
           +N++          P           + L  N +    I PS    +++  
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 1e-11
 Identities = 55/290 (18%), Positives = 83/290 (28%), Gaps = 46/290 (15%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
           T        +  +P+ IP +         + +  N +S      F     L IL + +N 
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAAS------QRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 115 -------------------------LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKN 149
                                    L    P +   L  L  L L    L    P   + 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 150 CTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK 209
              ++ L L DN L               L  L L  N +S         L  +      
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGN--LTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 210 SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL 269
             +                F  L  +  L L + NLSA     L  L  L  L L+ N  
Sbjct: 186 QNRVAH--------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 270 VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319
           V         + WL+    S +++  S+P  +A         L+ N+L G
Sbjct: 238 VC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 22/206 (10%)

Query: 155 SLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHE 214
           +       L   +P  I    P     + L  N +S           ++ +    S    
Sbjct: 15  TTSCPQQGLQ-AVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 215 GRLRVVTKGSERK-----------------YFTTLYLVNLLDLSSTNLSAEIPAELTSLV 257
                   G                      F  L  ++ L L    L    P     L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317
            L  L L  N L     +   +   L  L L  N++S     +   L  ++ L L  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 318 SGEIPNTNQFQTLNDPSIYEGNLALC 343
           +   P+  +            N    
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSA 215

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 49/259 (18%), Positives = 81/259 (31%), Gaps = 12/259 (4%)

Query: 82  ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG 141
           +T       L   +P+    +     + +  N +S     S  + R L  L L +N L+ 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 142 ELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLS 201
               +      +E LDL DN    ++         G LH L L            +  L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRC--------GLQELG 121

Query: 202 DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGT 261
                   ++Q+        +      F  L  +  L L    +S+        L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 262 LNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI 321
           L L  N +    P    +   L TL L  N LS     ++A L  + +L L+ N    + 
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 322 PNTNQFQTLNDPSIYEGNL 340
                +  L         +
Sbjct: 242 RARPLWAWLQKFRGSSSEV 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 47/274 (17%), Positives = 94/274 (34%), Gaps = 16/274 (5%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNL--KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSN 112
           T+DL+  N         P   G L  + +I      + +   +   FS     + +D+SN
Sbjct: 4   TLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH-MDLSN 55

Query: 113 NSLSG-SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWI 171
           + +   ++   +     L+ L L    LS  +  +L   + +  L+L   +         
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 172 GASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTT 231
             S    L  L+LS          +V      +     ++    +    +  S       
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSH-NHLVGKIPEEIGNFEWLETLDLSK 290
             +   L   S  L  +   E   L +L  L+LS    ++ +   E+G    L+TL +  
Sbjct: 176 NLVHLDLS-DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 291 NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324
               G++     +L    HL ++ ++ +     T
Sbjct: 235 IVPDGTLQLLKEAL---PHLQINCSHFTTIARPT 265

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 38/265 (14%), Positives = 85/265 (32%), Gaps = 38/265 (14%)

Query: 108 LDMSNNSLSGSIPESI----------------------GSLRTLRFLVLRNNYLSGE-LP 144
           LD++  +L   +   +                       S   ++ + L N+ +    L 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 145 LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK 204
             L  C+ +++L L    LS  I   +  +    L  L+LS          +    S  +
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN--LVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 205 VEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL 264
           ++               + +      T+  +NL         +++   +    +L  L+L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 265 SHNHLV-GKIPEEIGNFEWLETLDLSK-NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322
           S + ++     +E     +L+ L LS+   +       +  +  +  L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 323 -----------NTNQFQTLNDPSIY 336
                      N + F T+  P+I 
Sbjct: 243 LLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 178 LLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237
           L   LDL+  +L   +  R+           + V      R        ++F+   + + 
Sbjct: 1   LWQTLDLTGKNLHPDVTGRL---------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQH- 50

Query: 238 LDLSSTNLSAE-IPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD 287
           +DLS++ +    +   L+    L  L+L    L   I   +     L  L+
Sbjct: 51  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 5e-09
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 7/101 (6%)

Query: 235 VNL--LDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHL----VGKIPEEIGNFEWLETLD 287
           +++  LD+    LS    AEL   L     + L    L       I   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 288 LSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ 328
           L  N+L       +   +      +   +L           
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 108 LDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGE----LPLSLKNCTFMESLDLGDNN 162
           LD+    LS +   E +  L+  + + L +  L+      +  +L+    +  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 163 LSGNIPAWIGASMPGL---LHILDLSHN 187
           L       +   +      +  L L + 
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 3e-07
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 99  FSNSSFLYILDMSNNSLSG----SIPESIGSLRTLRFLVLRNNYLSGELPLSL-----KN 149
               S L +L +++  +S     S+  ++ +  +LR L L NN L     L L     + 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 150 CTFMESLDLGDNNLSGNIPAWIGA 173
              +E L L D   S  +   + A
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 1e-06
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIP-----LLFSNSSFLYILD 109
            + L+  +        +  ++     L  L +SNN L           +      L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 110 MSNNSLSGSIPESIGSLR 127
           + +   S  + + + +L 
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 128 TLRFLVLRNNYLSGE----LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM---PGLLH 180
            LR L L +  +S      L  +L     +  LDL +N L       +  S+     LL 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 181 ILDLSHNDLSGFIPPRVGNLSDMK 204
            L L     S  +  R+  L   K
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 27  SLTLDELDVAYNELRGRVPNSLGFNFPA--TVDLSSNNFEGRLPLCIPKSIGNLKQLITL 84
           SL +  LD+   EL       L         V L            I  ++     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 85  VISNNNLSGEIP-----LLFSNSSFLYILDMSNN 113
            + +N L           L + S  +  L + N 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 258 HLGTLNLSHNHL----VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH---- 309
            L  L L+   +       +   +     L  LDLS N L  +    +   +        
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 310 -LNLSYNNLSGEIPNTNQFQTLNDPSI 335
            L L     S E+ +  Q    + PS+
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 81  LITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSG----SIPESIGSLRTLRFLVLR 135
           + +L I    LS      L        ++ + +  L+      I  ++     L  L LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 136 NNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAW 170
           +N L       +       S  +   +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 5e-05
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 238 LDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEIG-----NFEWLETLDL 288
           L L+  ++S      + A L +   L  L+LS+N L      ++          LE L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 289 SKNKLSGSIPPSMASLIFMN 308
                S  +   + +L    
Sbjct: 434 YDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 129 LRFLVLRNNYLSGE-LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL--LHILDLS 185
           ++ L ++   LS       L      + + L D  L+      I +++     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 186 HNDLSGFIPPRVGNL 200
            N+L       V   
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 8e-09
 Identities = 38/219 (17%), Positives = 67/219 (30%), Gaps = 17/219 (7%)

Query: 99  FSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL 158
            S  +    ++    +L+ ++P  +   +    L L  N L      +L   T +  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLR 218
               L+          +  L    +   +            + D+      S+       
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL----- 117

Query: 219 VVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIG 278
                        L  +  L L    L    P  LT    L  L+L++N+L       + 
Sbjct: 118 --------GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 279 NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317
             E L+TL L +N L  +IP        +    L  N  
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 39/226 (17%), Positives = 63/226 (27%), Gaps = 20/226 (8%)

Query: 68  PLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR 127
           P+C    +  +   + +     NL+  +P          IL +S N L      ++    
Sbjct: 2   PIC---EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYT 55

Query: 128 TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187
            L  L      L       L+    +  L          +           L    L   
Sbjct: 56  RLTQL-----NLDRAELTKLQVDGTLPVLGT--------LDLSHNQLQSLPLLGQTLPAL 102

Query: 188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSA 247
            +      R+ +L    +     +Q         K       T    +  L L++ NL+ 
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162

Query: 248 EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKL 293
                L  L +L TL L  N L   IP+       L    L  N  
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 256 LVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN 315
              L  LN+S+N L+ ++P        LE L  S N L+  +P    +L     L++ YN
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNL---KQLHVEYN 334

Query: 316 NLSGEIPN 323
            L  E P+
Sbjct: 335 PLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI 297
           L++S+  L  E+PA    L  L     S NHL  ++PE   N   L+ L +  N L    
Sbjct: 289 LNVSNNKLI-ELPALPPRLERL---IASFNHL-AEVPELPQN---LKQLHVEYNPLR-EF 339

Query: 298 PPSMASL 304
           P    S+
Sbjct: 340 PDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 87  SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLS 146
             N  S EI  L      L  L++SNN L   +P     L  L       N+L+ E+P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPEL 322

Query: 147 LKNCTFMESLDLGDNNLSGNIPAWIG 172
            +N   ++ L +  N L    P    
Sbjct: 323 PQN---LKQLHVEYNPLRE-FPDIPE 344

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
              N+ S  I        +L  L + NN L  ELP        +E L    N+L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 321

Query: 170 WIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKV 205
                    L  L + +N L    P    ++ D+++
Sbjct: 322 LPQN-----LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317
               L L++  L   +PE   +   LE+L  S N L+  +P    SL  +   N +   L
Sbjct: 39  QAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 318 SGEIPN 323
           S   P 
Sbjct: 94  SDLPPL 99

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322
               N    +I         LE L++S NKL   +P     L     L  S+N+L+ E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVP 320

Query: 323 N 323
            
Sbjct: 321 E 321

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 12/129 (9%)

Query: 57  DLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS 116
            L+  +      L +   +  L  +  L +S+N L    P L +         +  +  +
Sbjct: 4   HLAHKD------LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV---LQASDNA 54

Query: 117 GSIPESIGSLRTLRFLVLRNNYL-SGELPLSLKNCTFMESLDLGDNNLSG--NIPAWIGA 173
               + + +L  L+ L+L NN L        L +C  +  L+L  N+L     I   +  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 174 SMPGLLHIL 182
            +P +  IL
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 24/105 (22%)

Query: 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP---------------------EE 276
           L L+  +L+  +   L  L+ +  L+LSHN L    P                     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 277 IGNFEWLETLDLSKNKL-SGSIPPSMASLIFMNHLNLSYNNLSGE 320
           + N   L+ L L  N+L   +    + S   +  LNL  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 83  TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE 142
            L +++ +L+  +         +  LD+S+N L   +P ++ +LR L   VL+ +  + E
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLE--VLQASDNALE 56

Query: 143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSG 191
               + N   ++ L L +N L  +       S P L  +L+L  N L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSLCQ 104

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 9e-06
 Identities = 22/242 (9%), Positives = 64/242 (26%), Gaps = 14/242 (5%)

Query: 83  TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE 142
             +   + ++ EIP     +     L      L      +      L  + +  N +   
Sbjct: 12  VFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSD 202
           +   + +          +   +              L  L +S+  +         +   
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 203 MKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTL 262
             +   +   +   +   +          L+L         N +          +     
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS---- 184

Query: 263 NLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI 321
               N+ + ++P ++         LD+S+ ++       + +L  +   +    NL  ++
Sbjct: 185 ---DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KL 238

Query: 322 PN 323
           P 
Sbjct: 239 PT 240

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 34/217 (15%), Positives = 66/217 (30%), Gaps = 12/217 (5%)

Query: 77  NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136
            L   I +    +N++  +    ++   +  L      ++    E +  L  L  L L++
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 137 NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPR 196
           N ++   PL          L          I          L          L+G    +
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 197 VGNLSDMKVEPPKSVQHEGR----LRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAE 252
           V  L   ++     +              + S+      L  +  L      +S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 253 LTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289
           L SL +L  ++L +N +    P  + N   L  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 75  IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVL 134
           + NL +L TL   +N +S   P   ++   L  + + NN +S   P  + +   L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 135 RN 136
            N
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 99  FSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL 158
            +N S L  L   +N +S   P  + SL  L  + L+NN +S   PL+  N + +  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTL 224

Query: 159 GD 160
            +
Sbjct: 225 TN 226

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 3   TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNN 62
                L+LN   +     D  +     L +L++  N+L G  PN+              N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 63  FEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES 122
               +     K    L QL TL + +N +S  +P  F + + L  L++++N  + +   +
Sbjct: 89  KIKEIS---NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163
                 LR   L         P  +++       DL  +  
Sbjct: 146 WF-AEWLRKKSLNGGAARCGAPSKVRDVQI---KDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 88  NNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL 147
            N +      +F     L  L++ +N +S  +P S   L +L  L L +N  +    L+ 
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA- 145

Query: 148 KNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL 189
               ++    L         P+ +       + I DL H++ 
Sbjct: 146 WFAEWLRKKSLNGGAARCGAPSKVRD-----VQIKDLPHSEF 182

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 12/202 (5%)

Query: 94  EIPLLFSNSSF--LYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCT 151
            I  +FS+ +F      ++   S++ ++ ++   L ++  ++  N+ +     +      
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLP 68

Query: 152 FMESLDLGDNNLSGNIP----AWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP 207
            +  L L  N L+   P      +G        + DLS       +       + +    
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN 267
                 +     +             L  L  LS  +        L  L  L  L LS N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 268 HLVGKIPEEIGNFEWLETLDLS 289
           H+       +   + L+ L+L 
Sbjct: 189 HI--SDLRALAGLKNLDVLELF 208

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 39/293 (13%), Positives = 81/293 (27%), Gaps = 17/293 (5%)

Query: 55  TVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS 114
            + LS N         + ++I + K L     S+         +      L    +    
Sbjct: 35  EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 94

Query: 115 LS-----GSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPA 169
           L       +          + FL          L  +         +      L+ N  A
Sbjct: 95  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 154

Query: 170 WIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYF 229
                +  ++   +   N           +   +                        Y 
Sbjct: 155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 214

Query: 230 TTLYLVNLLDLSSTNLSAEIPAELT-SLVHLGTLNLSHNHLVGKIPEEIGNFEW------ 282
             L +++L D + T+L +   A    S  +L  L L+   L  +    + +         
Sbjct: 215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 274

Query: 283 LETLDLSKNKLSGSIPPSMASLIFMN-----HLNLSYNNLSGEIPNTNQFQTL 330
           L+TL L  N++      ++ ++I         L L+ N  S E    ++ + +
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 67  LPLCIPKSIGNLKQLITLVISN--NNLSGEIPLLFSNSSFLYILDMSNNSLSG--SIPES 122
           L L   +S  +L      V+ N  ++++  + ++  N   L  L++SNN L     +   
Sbjct: 27  LDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI 86

Query: 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIP 168
           +     L+ L L  N L  E  L       +E L L  N+LS    
Sbjct: 87  VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301
           +  L  +   + T+ V    L+L    +   I       +  + +D S N++        
Sbjct: 4   TAELIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGF 59

Query: 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQT 329
             L  +  L ++ N +       +Q   
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALP 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.21

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=5.2e-31  Score=227.43  Aligned_cols=260  Identities=33%  Similarity=0.534  Sum_probs=224.3

Q ss_pred             CCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccc-ccccccccccccCCCCCcEEEcccCcccccccccccCCCCC
Q 041463           51 NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL  129 (356)
Q Consensus        51 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  129 (356)
                      .+++.|+++++.+.+.+  .+|..+..+++|++|++++ |.+.+.+|..|.++++|++|++++|.+....+..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~--~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCC--CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            46899999999887642  2567899999999999987 68888899999999999999999999998888888889999


Q ss_pred             cEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCC
Q 041463          130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK  209 (356)
Q Consensus       130 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~  209 (356)
                      +++++++|.+...+|..+..++.++.+++++|.+.+.+|..+.. +...++.+++++|.+.+..+..+..+.        
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~-l~~l~~~l~~~~n~l~~~~~~~~~~l~--------  198 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN--------  198 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC--------
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccc-ccccccccccccccccccccccccccc--------
Confidence            99999999988888999999999999999999998888877655 344468899999988776665544332        


Q ss_pred             CCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEcc
Q 041463          210 SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS  289 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~  289 (356)
                                               ...+++..+...+..+..+..+++++.+++.++.+.+. +..+..+++|+.|+++
T Consensus       199 -------------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls  252 (313)
T d1ogqa_         199 -------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLR  252 (313)
T ss_dssp             -------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECC
T ss_pred             -------------------------cccccccccccccccccccccccccccccccccccccc-ccccccccccccccCc
Confidence                                     23488888888888888888899999999999998854 4467889999999999


Q ss_pred             CCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCccccCCCCC
Q 041463          290 KNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLP  348 (356)
Q Consensus       290 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  348 (356)
                      +|++++.+|..++++++|++|+|++|+++|.+|....++.|+.++ +.+|..+||.|..
T Consensus       253 ~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~-l~~N~~l~g~plp  310 (313)
T d1ogqa_         253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSPLP  310 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTTSS
T ss_pred             cCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHH-hCCCccccCCCCC
Confidence            999999999999999999999999999999999998999999998 8899999999865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.3e-27  Score=204.40  Aligned_cols=251  Identities=30%  Similarity=0.463  Sum_probs=209.8

Q ss_pred             CCcEeeccCCccCCc--CCCCC-CCCCCcEEecCC-CcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCC
Q 041463           29 TLDELDVAYNELRGR--VPNSL-GFNFPATVDLSS-NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSF  104 (356)
Q Consensus        29 ~L~~L~l~~~~~~~~--~~~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~  104 (356)
                      +++.|+|+++.+.+.  +|..+ ++++|++|++++ |.+.+.    +|..+.++++|++|++++|.+.+..+..+..+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~----iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc----cccccccccccchhhhccccccccccccccchhh
Confidence            688999999988763  44555 699999999986 778774    4578899999999999999998888888999999


Q ss_pred             CcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCC-cEEEecCCcccccCCchhhcccccceeEEE
Q 041463          105 LYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFM-ESLDLGDNNLSGNIPAWIGASMPGLLHILD  183 (356)
Q Consensus       105 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L-~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~  183 (356)
                      |+++++++|.+....|..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|.+.+..+..+.. ..  ...++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~-l~--~~~l~  203 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN--LAFVD  203 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC--CSEEE
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc-cc--ccccc
Confidence            9999999999988888999999999999999999998899888888775 88999999998777766543 22  55788


Q ss_pred             cccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEE
Q 041463          184 LSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLN  263 (356)
Q Consensus       184 l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~  263 (356)
                      +..+...+..+..+.                                .+++++.++++++.+.+.. ..+..+++|+.|+
T Consensus       204 l~~~~~~~~~~~~~~--------------------------------~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~  250 (313)
T d1ogqa_         204 LSRNMLEGDASVLFG--------------------------------SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD  250 (313)
T ss_dssp             CCSSEEEECCGGGCC--------------------------------TTSCCSEEECCSSEECCBG-GGCCCCTTCCEEE
T ss_pred             ccccccccccccccc--------------------------------ccccccccccccccccccc-ccccccccccccc
Confidence            887776655554443                                4445666999999998654 4677789999999


Q ss_pred             ccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcc-ccc
Q 041463          264 LSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL-SGE  320 (356)
Q Consensus       264 L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~-~~~  320 (356)
                      +++|++++.+|..++.+++|++|+|++|++++.+|. +.++++|+.+++++|+. .|.
T Consensus       251 Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             CccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            999999999999999999999999999999988885 57899999999999985 444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.3e-24  Score=184.77  Aligned_cols=279  Identities=20%  Similarity=0.240  Sum_probs=208.9

Q ss_pred             ceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463            5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT   83 (356)
Q Consensus         5 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~   83 (356)
                      .+.++-++..++ .+|..+.   +++++|++++|.++...+..+ ++++|++|++++|.+...    .+..|..+++|++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i----~~~~f~~l~~L~~   83 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----SPGAFAPLVKLER   83 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----CTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc----chhhhhCCCccCE
Confidence            466777777777 5666553   689999999999986665555 689999999999988742    2467888999999


Q ss_pred             EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccc--cccCccccCCCCCcEEEecCC
Q 041463           84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLS--GELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus        84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L~l~~~  161 (356)
                      |++++|.+. .+|..  ....++.|++..+.+....+..+.....++.+....+...  ...+..+..+++|+.+++.+|
T Consensus        84 L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          84 LYLSKNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             EECCSSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ecccCCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence            999999887 34433  3467889999998888666666777778888888776443  234556788889999999998


Q ss_pred             cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463          162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS  241 (356)
Q Consensus       162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  241 (356)
                      .+. .++..+    ...++.|+++++......+..+                                ..++.++.|+++
T Consensus       161 ~l~-~l~~~~----~~~L~~L~l~~n~~~~~~~~~~--------------------------------~~~~~l~~L~~s  203 (305)
T d1xkua_         161 NIT-TIPQGL----PPSLTELHLDGNKITKVDAASL--------------------------------KGLNNLAKLGLS  203 (305)
T ss_dssp             CCC-SCCSSC----CTTCSEEECTTSCCCEECTGGG--------------------------------TTCTTCCEEECC
T ss_pred             Ccc-ccCccc----CCccCEEECCCCcCCCCChhHh--------------------------------hccccccccccc
Confidence            876 444432    2348899998887665444333                                444556669999


Q ss_pred             CCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccc------cCcCCCCEEEcccC
Q 041463          242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM------ASLIFMNHLNLSYN  315 (356)
Q Consensus       242 ~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~------~~l~~L~~L~l~~n  315 (356)
                      +|.+.+..+.++.++++|++|+|++|.++ .+|.++..+++|++|++++|+|+......|      ..+++|+.|++++|
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence            99999888888999999999999999998 678889999999999999999985433333      45678999999999


Q ss_pred             cccccCCCCcccCcCCC
Q 041463          316 NLSGEIPNTNQFQTLND  332 (356)
Q Consensus       316 ~~~~~~~~~~~l~~l~~  332 (356)
                      ++....-.-..|+-++.
T Consensus       283 ~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         283 PVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             SSCGGGSCGGGGTTCCC
T ss_pred             cCccCcCCHhHhccccc
Confidence            98643222344554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=5.8e-24  Score=188.09  Aligned_cols=300  Identities=24%  Similarity=0.298  Sum_probs=198.2

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      +.+|++|++++++|+. + .++..+ ++|++|++++|.+++. +..-++++|++|++++|.+.+     + ..+..+++|
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~L-~nL~~L~Ls~N~l~~l-~~l~~L~~L~~L~L~~n~i~~-----i-~~l~~l~~L  112 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEYL-NNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIAD-----I-TPLANLTNL  112 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGGC-TTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTC
T ss_pred             hCCCCEEECCCCCCCC-c-cccccC-CCCCEEeCcCCcCCCC-ccccCCccccccccccccccc-----c-ccccccccc
Confidence            4578888888888874 2 456655 8889999988888854 344468888999998888763     2 236778888


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCccc-----------------------------------------cccc
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS-----------------------------------------GSIP  120 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~-----------------------------------------~~~~  120 (356)
                      +.+++.++.+.+..+.  .....+.......+.+.                                         ....
T Consensus       113 ~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (384)
T d2omza2         113 TGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  190 (384)
T ss_dssp             CEEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            8888887776533221  12222222222221110                                         0112


Q ss_pred             ccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCC
Q 041463          121 ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNL  200 (356)
Q Consensus       121 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l  200 (356)
                      ..+..+++++.+.+++|.+++..+  ....++|+.|++++|.+.+ .+ .+ ..++ .++.+++.+|.+.+..  .+..+
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l-~~l~-~L~~L~l~~n~l~~~~--~~~~~  262 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TL-ASLT-NLTDLDLANNQISNLA--PLSGL  262 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GG-GGCT-TCSEEECCSSCCCCCG--GGTTC
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hh-hccc-ccchhccccCccCCCC--ccccc
Confidence            234556788888888888774432  4566788888888888763 32 22 2233 3888888888776432  35555


Q ss_pred             CCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCC
Q 041463          201 SDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNF  280 (356)
Q Consensus       201 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~  280 (356)
                      ++|+..........          ....+..++.++.+++..+.+.+  ...+..++++++|++++|.+.+. + .+..+
T Consensus       263 ~~L~~L~l~~~~l~----------~~~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l  328 (384)
T d2omza2         263 TKLTELKLGANQIS----------NISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSL  328 (384)
T ss_dssp             TTCSEEECCSSCCC----------CCGGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGC
T ss_pred             ccCCEeeccCcccC----------CCCcccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccC
Confidence            56655333222111          11235567778888888888874  23467788899999999988743 2 47788


Q ss_pred             CCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccC
Q 041463          281 EWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN  339 (356)
Q Consensus       281 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~  339 (356)
                      ++|++|++++|++++ ++ .+.++++|++|++++|++++.+| +.++++|+.++ +.+|
T Consensus       329 ~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~-L~~N  383 (384)
T d2omza2         329 TKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLG-LNDQ  383 (384)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEE-CCCE
T ss_pred             CCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEee-CCCC
Confidence            999999999998883 44 57888999999999999987655 77788888777 4443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.2e-23  Score=178.58  Aligned_cols=247  Identities=27%  Similarity=0.305  Sum_probs=154.5

Q ss_pred             CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCC-cccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463           30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIP-KSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL  108 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  108 (356)
                      .++++-++.+++. +|..+ .+.+++|++++|.++.     ++ ..|..+++|++|++++|.+....+..|..+++|++|
T Consensus        12 ~~~~~C~~~~L~~-lP~~l-~~~l~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          12 LRVVQCSDLGLEK-VPKDL-PPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             TTEEECTTSCCCS-CCCSC-CTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCEEEecCCCCCc-cCCCC-CCCCCEEECcCCcCCC-----cChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence            4455555555552 23322 2456666666665552     22 245556666666666666654445556666666666


Q ss_pred             EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccccc-CCchhhcccccceeEEEcccC
Q 041463          109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN-IPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      ++++|++.. .|..  ..+.++.|...+|.+....+..+........++...+..... ........+.. ++.+++.++
T Consensus        85 ~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~-L~~l~l~~n  160 (305)
T d1xkua_          85 YLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADT  160 (305)
T ss_dssp             ECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CCEEECCSS
T ss_pred             cccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc-cCccccccC
Confidence            666666552 2221  123555566666555533333344445555555555432211 11111111222 555555555


Q ss_pred             cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463          188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN  267 (356)
Q Consensus       188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n  267 (356)
                      .+.. ++.                                  ...++|+.|+++++......+..+..++.++.|++++|
T Consensus       161 ~l~~-l~~----------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         161 NITT-IPQ----------------------------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             CCCS-CCS----------------------------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             Cccc-cCc----------------------------------ccCCccCEEECCCCcCCCCChhHhhccccccccccccc
Confidence            4331 111                                  12456888999999998888888999999999999999


Q ss_pred             cCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC
Q 041463          268 HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN  323 (356)
Q Consensus       268 ~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  323 (356)
                      .+.+..+.++..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.....
T Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             cccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChh
Confidence            999777889999999999999999999 6688899999999999999999876443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=8.8e-24  Score=186.94  Aligned_cols=280  Identities=22%  Similarity=0.272  Sum_probs=199.3

Q ss_pred             CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      .+++|++|++++|.+++..  .+.++ ++|++|++++|.+.+ .+...++++|+.|+++++.+++..+      ......
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~--~l~~L-~~L~~L~L~~n~i~~-i~~l~~l~~L~~L~~~~~~~~~~~~------~~~~~~  133 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDIT--PLKNL-TKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITDIDP------LKNLTN  133 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTC-TTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG------GTTCTT
T ss_pred             cCCCCCEEeCcCCcCCCCc--cccCC-ccccccccccccccc-ccccccccccccccccccccccccc------cccccc
Confidence            3689999999999998643  37776 899999999999985 3445579999999999988764211      111122


Q ss_pred             ccEEeccccccc-----------------------------------------ccccccccCCCCCcEEEcccCcccccc
Q 041463           81 LITLVISNNNLS-----------------------------------------GEIPLLFSNSSFLYILDMSNNSLSGSI  119 (356)
Q Consensus        81 L~~L~l~~~~i~-----------------------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~  119 (356)
                      +.......+.+.                                         ......+..+++++.++++++.+.+..
T Consensus       134 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~  213 (384)
T d2omza2         134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT  213 (384)
T ss_dssp             CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCC
Confidence            222222211110                                         112234566788999999999888554


Q ss_pred             cccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCC
Q 041463          120 PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGN  199 (356)
Q Consensus       120 ~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  199 (356)
                      +  +..+++|++|++++|.+++  +..+..+++|+.+++.+|.+.+..+  + ..++. ++.++++++.+.+..  .+..
T Consensus       214 ~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~~~~~-L~~L~l~~~~l~~~~--~~~~  283 (384)
T d2omza2         214 P--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L-SGLTK-LTELKLGANQISNIS--PLAG  283 (384)
T ss_dssp             G--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--G-TTCTT-CSEEECCSSCCCCCG--GGTT
T ss_pred             c--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--c-ccccc-CCEeeccCcccCCCC--cccc
Confidence            4  4567889999999998873  3467888999999999998874322  2 22333 899999988876332  2344


Q ss_pred             CCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCC
Q 041463          200 LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN  279 (356)
Q Consensus       200 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  279 (356)
                      +..++.........          .....+..+++++.|++++|.+.+..  .+..+++|++|++++|.++ .++ .+..
T Consensus       284 ~~~l~~l~~~~n~l----------~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~  349 (384)
T d2omza2         284 LTALTNLELNENQL----------EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLAN  349 (384)
T ss_dssp             CTTCSEEECCSSCC----------SCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGG
T ss_pred             cccccccccccccc----------ccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcC
Confidence            44443322221111          11234677889999999999998643  3788999999999999998 444 6889


Q ss_pred             CCCccEEEccCCcccccCCccccCcCCCCEEEcccCc
Q 041463          280 FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNN  316 (356)
Q Consensus       280 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  316 (356)
                      +++|++|++++|++++..|  ++++++|+.|+|++|.
T Consensus       350 l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            9999999999999996544  8899999999999873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-24  Score=179.52  Aligned_cols=205  Identities=24%  Similarity=0.208  Sum_probs=109.7

Q ss_pred             CcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEE
Q 041463           77 NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESL  156 (356)
Q Consensus        77 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  156 (356)
                      ....+.+++.+++.++ .+|..+.  +++++|++++|.+....+..|.++++|++|++++|.++. ++ .+..+++|+.|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            3445555666666666 3454432  467777777777765555666777777777777777662 22 23456666666


Q ss_pred             EecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccccccc
Q 041463          157 DLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVN  236 (356)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  236 (356)
                      ++++|.+.. .+..+                                                          ..+++|+
T Consensus        83 ~Ls~N~l~~-~~~~~----------------------------------------------------------~~l~~L~  103 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLG----------------------------------------------------------QTLPALT  103 (266)
T ss_dssp             ECCSSCCSS-CCCCT----------------------------------------------------------TTCTTCC
T ss_pred             ccccccccc-ccccc----------------------------------------------------------ccccccc
Confidence            666666542 22221                                                          1222333


Q ss_pred             EEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCc
Q 041463          237 LLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNN  316 (356)
Q Consensus       237 ~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  316 (356)
                      .|+++++.+.+..+..+..+.++++|.+++|.+....+..+..+++|+.|++++|++++..++.|..+++|++|+|++|+
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC
Confidence            35555554444444444445555555555555553344444555555555555555554445555555555555555555


Q ss_pred             ccccCCCCcccCcCCCccccccCccccCCCCCCCCC
Q 041463          317 LSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       317 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      ++..++.+..++.|+.++       +.||||.|||.
T Consensus       184 L~~lp~~~~~~~~L~~L~-------L~~Np~~CdC~  212 (266)
T d1p9ag_         184 LYTIPKGFFGSHLLPFAF-------LHGNPWLCNCE  212 (266)
T ss_dssp             CCCCCTTTTTTCCCSEEE-------CCSCCBCCSGG
T ss_pred             CcccChhHCCCCCCCEEE-------ecCCCCCCCcc
Confidence            553333334444444332       33456666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.6e-24  Score=181.50  Aligned_cols=227  Identities=22%  Similarity=0.191  Sum_probs=169.3

Q ss_pred             cEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEE
Q 041463           54 ATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV  133 (356)
Q Consensus        54 ~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  133 (356)
                      .+++++++.++ .    +|..+.  +.+++|++++|.++...+..|.++++|++|+++++.+....+..+.....++.+.
T Consensus        14 ~~v~c~~~~L~-~----iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~   86 (284)
T d1ozna_          14 VTTSCPQQGLQ-A----VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (284)
T ss_dssp             CEEECCSSCCS-S----CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCCCCCC-c----cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccc
Confidence            35667776665 3    333332  5688999999999866667899999999999999999877788888888888887


Q ss_pred             ee-ccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCc
Q 041463          134 LR-NNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ  212 (356)
Q Consensus       134 l~-~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~  212 (356)
                      .. .+.++...+..+..+++|+.|++++|.+....+ ....... .++.+++.+|.+++..+..+               
T Consensus        87 ~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~-~L~~l~l~~N~l~~i~~~~f---------------  149 (284)
T d1ozna_          87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLA-ALQYLYLQDNALQALPDDTF---------------  149 (284)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTT---------------
T ss_pred             cccccccccccchhhcccccCCEEecCCcccccccc-cccchhc-ccchhhhccccccccChhHh---------------
Confidence            65 455665557778889999999999988763333 3223233 38888888887764333333               


Q ss_pred             cCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCc
Q 041463          213 HEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK  292 (356)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~  292 (356)
                                       ..+++|+.|++++|.+....+.+|.++++|+++.+.+|.+++..|..|..+++|++|++++|+
T Consensus       150 -----------------~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         150 -----------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             -----------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             -----------------ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence                             334456668888888887777778888888888888888877777888888888888888888


Q ss_pred             ccccCCccccCcCCCCEEEcccCcccccC
Q 041463          293 LSGSIPPSMASLIFMNHLNLSYNNLSGEI  321 (356)
Q Consensus       293 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  321 (356)
                      +.+..+..|+.+++|++|++++|++....
T Consensus       213 i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         213 LSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cccccccccccccccCEEEecCCCCCCCc
Confidence            88777777888888888888888887543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.1e-23  Score=174.35  Aligned_cols=251  Identities=22%  Similarity=0.206  Sum_probs=168.6

Q ss_pred             EeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcc
Q 041463           32 ELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMS  111 (356)
Q Consensus        32 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~  111 (356)
                      .++.++++++ .+|..+ ...+++|+|++|.++. +|   +..|..+++|++|+++++.+....+..+..+..++.++..
T Consensus        15 ~v~c~~~~L~-~iP~~i-p~~~~~L~Ls~N~i~~-i~---~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRISH-VP---AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             EEECCSSCCS-SCCTTC-CTTCSEEECTTSCCCE-EC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCCC-ccCCCC-CCCCCEEECcCCcCCC-CC---HHHhhccccccccccccccccccccccccccccccccccc
Confidence            3455555665 334332 2567888888888763 22   2457778888888888888876666777777888887765


Q ss_pred             -cCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc
Q 041463          112 -NNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS  190 (356)
Q Consensus       112 -~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  190 (356)
                       .+.+....+..+.++++|++|++++|.+....+..+....+|+.+++.+|.+. .++......... ++.|++++|.+.
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~-L~~L~l~~N~l~  166 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN-LTHLFLHGNRIS  166 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCCC
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccc-hhhcccccCccc
Confidence             44555556677788888888888888876555556677778888888888887 444333333433 788888888776


Q ss_pred             ccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCc
Q 041463          191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLV  270 (356)
Q Consensus       191 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~  270 (356)
                      ...+..+.                                .+++|+.+++++|.+.+..+..|..+++|++|++++|.+.
T Consensus       167 ~l~~~~f~--------------------------------~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         167 SVPERAFR--------------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             EECTTTTT--------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccchhhhc--------------------------------cccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            54444333                                3445555888888888777788888888888888888888


Q ss_pred             CCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC
Q 041463          271 GKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN  323 (356)
Q Consensus       271 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  323 (356)
                      +..+..|+.+++|++|++++|++...-+ ...-...++.+....+++....|.
T Consensus       215 ~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         215 ALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESG
T ss_pred             cccccccccccccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCch
Confidence            6666778888888888888887763211 111112344455555666654433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-21  Score=161.54  Aligned_cols=200  Identities=25%  Similarity=0.234  Sum_probs=132.2

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCC
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL  129 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  129 (356)
                      ...+.+++.+++.++ .    +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++.. + .+..+++|
T Consensus         9 ~~~~~~v~C~~~~L~-~----iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L   79 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-A----LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVL   79 (266)
T ss_dssp             STTCCEEECTTSCCS-S----CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTC
T ss_pred             cCCCeEEEccCCCCC-e----eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccc
Confidence            456677899999887 3    344442  5799999999999877778899999999999999999843 3 35789999


Q ss_pred             cEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCC
Q 041463          130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK  209 (356)
Q Consensus       130 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~  209 (356)
                      ++|++++|+++ ..+..+..+++|+.|+++++.+.. .+......... ++.|++++|                      
T Consensus        80 ~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~-l~~L~l~~n----------------------  134 (266)
T d1p9ag_          80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE-LQELYLKGN----------------------  134 (266)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTT-CCEEECTTS----------------------
T ss_pred             ccccccccccc-ccccccccccccccccccccccce-eeccccccccc-ccccccccc----------------------
Confidence            99999999998 567788889999999999888763 22222222222 455555544                      


Q ss_pred             CCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEcc
Q 041463          210 SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS  289 (356)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~  289 (356)
                                                        .+....+..+..+++++.+++++|.+++..+..|..+++|++|+|+
T Consensus       135 ----------------------------------~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         135 ----------------------------------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             ----------------------------------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ----------------------------------ccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence                                              4443333444444555555555555554444445555555555555


Q ss_pred             CCcccccCCccccCcCCCCEEEcccCccc
Q 041463          290 KNKLSGSIPPSMASLIFMNHLNLSYNNLS  318 (356)
Q Consensus       290 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  318 (356)
                      +|+++ .+|..+..+++|+.|+|++|++.
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            55555 44444444555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=1.2e-18  Score=151.51  Aligned_cols=288  Identities=26%  Similarity=0.349  Sum_probs=167.0

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI   82 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~   82 (356)
                      .++++|+|+++.++ .+|+.    .++|++|++++|.++ .+|+.  ..+|++|++++|.++.     ++..   .+.|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~--~~~L~~L~l~~n~l~~-----l~~l---p~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL--PQSLKSLLVDNNNLKA-----LSDL---PPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC--CTTCCEEECCSSCCSC-----CCSC---CTTCC
T ss_pred             cCCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc--hhhhhhhhhhhcccch-----hhhh---ccccc
Confidence            36889999999997 46653    378999999999998 45554  4689999999998862     2211   24699


Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN  162 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  162 (356)
                      +|++++|.+. .+|. +..+++|++|+++++.+... +.   ....+..+.+.++...  ....+..++.++.+++.++.
T Consensus       102 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccc
Confidence            9999999987 4443 57789999999998876522 21   1234444444443332  12233444455555554443


Q ss_pred             ccc-------------------cCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCc---cCCCeeee
Q 041463          163 LSG-------------------NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ---HEGRLRVV  220 (356)
Q Consensus       163 l~~-------------------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~---~~~~~~~~  220 (356)
                      ...                   ..+..  ..++ .++.++++++... ..+.....+..+.........   ........
T Consensus       174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~l~-~L~~l~l~~n~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  249 (353)
T d1jl5a_         174 LKKLPDLPLSLESIVAGNNILEELPEL--QNLP-FLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFL  249 (353)
T ss_dssp             CSSCCCCCTTCCEEECCSSCCSSCCCC--TTCT-TCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             ccccccccccccccccccccccccccc--cccc-ccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            321                   11111  1122 2677777776544 233333222222111100000   00000000


Q ss_pred             e-cCCcccccccc-ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCC
Q 041463          221 T-KGSERKYFTTL-YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP  298 (356)
Q Consensus       221 ~-~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  298 (356)
                      . .......+..+ ......++..+.+.+.    ...+++|++|++++|.+. .+|..   +++|++|++++|+++ .+|
T Consensus       250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~  320 (353)
T d1jl5a_         250 DVSENIFSGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVP  320 (353)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCC
T ss_pred             ccccccccccccccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccc
Confidence            0 00000111111 2334455555555422    223578999999999998 66643   678999999999998 566


Q ss_pred             ccccCcCCCCEEEcccCcccccCCCC-cccCcCC
Q 041463          299 PSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLN  331 (356)
Q Consensus       299 ~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~  331 (356)
                      ..   +++|++|++++|+++. +|.. .++++|+
T Consensus       321 ~~---~~~L~~L~L~~N~L~~-lp~~~~~L~~L~  350 (353)
T d1jl5a_         321 EL---PQNLKQLHVEYNPLRE-FPDIPESVEDLR  350 (353)
T ss_dssp             CC---CTTCCEEECCSSCCSS-CCCCCTTCCEEE
T ss_pred             cc---cCCCCEEECcCCcCCC-CCccccccCeeE
Confidence            43   4689999999999874 4544 4555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.4e-18  Score=140.14  Aligned_cols=221  Identities=13%  Similarity=0.066  Sum_probs=126.9

Q ss_pred             cEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCccccc-ccccccCCCCCcEE
Q 041463           54 ATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS-IPESIGSLRTLRFL  132 (356)
Q Consensus        54 ~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L  132 (356)
                      +.++.++..++ .    +|..+.  +++++|++++|.++...+..|.++++|++|++++|.+... .+..|..++.++++
T Consensus        11 ~~i~c~~~~l~-~----iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVT-E----IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCS-S----CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCCC-C----cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            45555555554 2    233321  3567777777777644444567777777777777766543 34456667777777


Q ss_pred             Eeec-cccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCC
Q 041463          133 VLRN-NYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSV  211 (356)
Q Consensus       133 ~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~  211 (356)
                      .+.. +.+....+..+..+++|+.+++.++.+....+........ .+..+...++.+....+..+..+           
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~-~l~~~~~~n~~l~~i~~~~~~~~-----------  151 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGL-----------  151 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSS-CEEEEEESCTTCCEECTTSSTTS-----------
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccc-ccccccccccccccccccccccc-----------
Confidence            7654 4555455566777777888887777765322222211111 13444444433332222111111           


Q ss_pred             ccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeE-EccCCcCcCCCCcCcCCCCCccEEEccC
Q 041463          212 QHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTL-NLSHNHLVGKIPEEIGNFEWLETLDLSK  290 (356)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L-~L~~n~i~~~~~~~~~~~~~L~~L~L~~  290 (356)
                                          ...++.++++++.+.......+.. .+++++ .+.+|.++...+..|.++++|++|++++
T Consensus       152 --------------------~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         152 --------------------SFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  210 (242)
T ss_dssp             --------------------BSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT
T ss_pred             --------------------cccceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCC
Confidence                                124555777777777554444443 444444 5566777743344577888888888888


Q ss_pred             CcccccCCccccCcCCCCEEEccc
Q 041463          291 NKLSGSIPPSMASLIFMNHLNLSY  314 (356)
Q Consensus       291 n~i~~~~~~~~~~l~~L~~L~l~~  314 (356)
                      |+++...+..|.++++|+.+++.+
T Consensus       211 N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         211 TRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CcCCccCHHHHcCCcccccCcCCC
Confidence            888855555677777676666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=4.8e-18  Score=138.40  Aligned_cols=186  Identities=19%  Similarity=0.274  Sum_probs=95.3

Q ss_pred             cccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEE
Q 041463           78 LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLD  157 (356)
Q Consensus        78 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  157 (356)
                      +.+|+.|++.+|.+...  ..+..+++|++|++++|.+.+..+  +..+++++++.+++|.++.  ...+..+++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc--cccccccccccccc
Confidence            34444555555444422  224445555555555555443222  4455555555555555441  12344555555555


Q ss_pred             ecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccE
Q 041463          158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL  237 (356)
Q Consensus       158 l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  237 (356)
                      ++++...+..+  +.. . ..++.+.++.+.+...                                  ..+...++|+.
T Consensus       114 l~~~~~~~~~~--~~~-~-~~~~~l~~~~~~~~~~----------------------------------~~~~~~~~L~~  155 (227)
T d1h6ua2         114 LTSTQITDVTP--LAG-L-SNLQVLYLDLNQITNI----------------------------------SPLAGLTNLQY  155 (227)
T ss_dssp             CTTSCCCCCGG--GTT-C-TTCCEEECCSSCCCCC----------------------------------GGGGGCTTCCE
T ss_pred             cccccccccch--hcc-c-cchhhhhchhhhhchh----------------------------------hhhcccccccc
Confidence            55554431111  101 1 1144555444433210                                  01233445566


Q ss_pred             EeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       238 L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      |++++|.+.+.  ..+..+++|++|++++|.+++ ++ .++.+++|++|++++|++++. + .++++++|+.|+++
T Consensus       156 L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         156 LSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             ccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            77777666532  235666777777777777763 32 366677777777777777733 3 26677777777776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.1e-16  Score=127.51  Aligned_cols=204  Identities=19%  Similarity=0.288  Sum_probs=132.0

Q ss_pred             EeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcc
Q 041463           32 ELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMS  111 (356)
Q Consensus        32 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~  111 (356)
                      .+++..+.+++.. ..-.+.+|++|++.+|.++.     + ..+.++++|++|++++|.+.+..+  +..++++++++++
T Consensus        23 ~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~-----l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          23 KIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTT-----I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCc-----c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            3444444444321 11135677777777776652     2 246667777777777777664332  6677777777777


Q ss_pred             cCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccc
Q 041463          112 NNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSG  191 (356)
Q Consensus       112 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~  191 (356)
                      +|.++..  ..+..+++|+++.++++...+  ...+...+.++.+.+.++.+....+  +. ..+ .++.|++++|.+..
T Consensus        94 ~n~~~~i--~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~-~L~~L~l~~n~~~~  165 (227)
T d1h6ua2          94 GNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LA-GLT-NLQYLSIGNAQVSD  165 (227)
T ss_dssp             SCCCSCC--GGGTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GG-GCT-TCCEEECCSSCCCC
T ss_pred             ccccccc--ccccccccccccccccccccc--cchhccccchhhhhchhhhhchhhh--hc-ccc-cccccccccccccc
Confidence            7776632  245677778888877776642  2345566777788887776642221  11 122 37888887776542


Q ss_pred             cCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcC
Q 041463          192 FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG  271 (356)
Q Consensus       192 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~  271 (356)
                      .                                  ..++.+++|+.|++++|.+++. + .+..+++|++|++++|++++
T Consensus       166 ~----------------------------------~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         166 L----------------------------------TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             C----------------------------------GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             c----------------------------------hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC
Confidence            1                                  1134556777899999998753 2 47888999999999999984


Q ss_pred             CCCcCcCCCCCccEEEccC
Q 041463          272 KIPEEIGNFEWLETLDLSK  290 (356)
Q Consensus       272 ~~~~~~~~~~~L~~L~L~~  290 (356)
                       ++ .++++++|+.|++++
T Consensus       210 -i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         210 -VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CG-GGTTCTTCCEEEEEE
T ss_pred             -Cc-ccccCCCCCEEEeeC
Confidence             43 478899999999873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-19  Score=163.73  Aligned_cols=43  Identities=14%  Similarity=0.088  Sum_probs=27.2

Q ss_pred             cCCCCCcEEEecCCcccccCCchhhcc--cccceeEEEcccCccc
Q 041463          148 KNCTFMESLDLGDNNLSGNIPAWIGAS--MPGLLHILDLSHNDLS  190 (356)
Q Consensus       148 ~~l~~L~~L~l~~~~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~  190 (356)
                      .....++.+++++|.+...........  ....++.+++++|.+.
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345689999999998753322221111  1223889999998875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.9e-16  Score=128.27  Aligned_cols=216  Identities=16%  Similarity=0.086  Sum_probs=152.2

Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccccc-CccccCCCCCcEEEecC
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGEL-PLSLKNCTFMESLDLGD  160 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~  160 (356)
                      +.++.++..++ .+|..+  .+++++|++++|.+....+.+|.++++|++|++++|.+...+ +..+..++.++.+.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56777777766 555544  258999999999998666678899999999999999886544 45678899999998865


Q ss_pred             -CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEe
Q 041463          161 -NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD  239 (356)
Q Consensus       161 -~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  239 (356)
                       +.+....+. ....++. ++.+++.++.+....+  ...                             ...+..+..+.
T Consensus        88 ~n~l~~~~~~-~~~~l~~-L~~l~l~~~~l~~~~~--~~~-----------------------------~~~l~~l~~~~  134 (242)
T d1xwdc1          88 ANNLLYINPE-AFQNLPN-LQYLLISNTGIKHLPD--VHK-----------------------------IHSLQKVLLDI  134 (242)
T ss_dssp             CTTCCEECTT-SEECCTT-CCEEEEESCCCCSCCC--CTT-----------------------------TCBSSCEEEEE
T ss_pred             cccccccccc-ccccccc-ccccccchhhhccccc--ccc-----------------------------ccccccccccc
Confidence             455533333 3343444 9999999987753211  111                             12333455566


Q ss_pred             ecCCcccccCchhhhccc-ccCeEEccCCcCcCCCCcCcCCCCCccEE-EccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463          240 LSSTNLSAEIPAELTSLV-HLGTLNLSHNHLVGKIPEEIGNFEWLETL-DLSKNKLSGSIPPSMASLIFMNHLNLSYNNL  317 (356)
Q Consensus       240 L~~~~l~~~~~~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~~~~L~~L-~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  317 (356)
                      ..++.+....+..+.+++ .++.|++.+|.++...+..+ ..++++.+ ++++|++++..+..|.++++|++|++++|++
T Consensus       135 ~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             ESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             ccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence            677777655556666554 78889999999984444444 44555555 5678899966677899999999999999999


Q ss_pred             cccCCCC-cccCcCCCcc
Q 041463          318 SGEIPNT-NQFQTLNDPS  334 (356)
Q Consensus       318 ~~~~~~~-~~l~~l~~~~  334 (356)
                      +..++.. ..++.|+.+.
T Consensus       214 ~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         214 HSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CCCCSSSCTTCCEEESSS
T ss_pred             CccCHHHHcCCcccccCc
Confidence            9766644 6666666555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=1.3e-14  Score=125.64  Aligned_cols=273  Identities=23%  Similarity=0.268  Sum_probs=165.6

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL   81 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L   81 (356)
                      .++|++|++++|.|+ .+|..+    .+|++|++.+|.++. +++.  .+.|++|++++|.+..     +|. +..+++|
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~~----~~L~~L~l~~n~l~~-l~~l--p~~L~~L~L~~n~l~~-----lp~-~~~l~~L  122 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPELP----QSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLEK-----LPE-LQNSSFL  122 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCCC----TTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCSS-----CCC-CTTCTTC
T ss_pred             CCCCCEEECCCCCCc-ccccch----hhhhhhhhhhcccch-hhhh--cccccccccccccccc-----ccc-hhhhccc
Confidence            368999999999998 566542    689999999998873 3322  2579999999999872     333 5678999


Q ss_pred             cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccc------------------cc
Q 041463           82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG------------------EL  143 (356)
Q Consensus        82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------------~~  143 (356)
                      +.|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+.+.++....                  ..
T Consensus       123 ~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~  196 (353)
T d1jl5a_         123 KIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE  196 (353)
T ss_dssp             CEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS
T ss_pred             eeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccccccccccccccccccccccc
Confidence            9999999887622 21   2344455555444332  12233444555555554443321                  11


Q ss_pred             CccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCC--CCCc---cCCCee
Q 041463          144 PLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPP--KSVQ---HEGRLR  218 (356)
Q Consensus       144 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~--~~~~---~~~~~~  218 (356)
                      ...+..++.|+.+++++|... ..+...     ..+..+.+..+.+.. .+.....+........  ....   ......
T Consensus       197 ~~~~~~l~~L~~l~l~~n~~~-~~~~~~-----~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~  269 (353)
T d1jl5a_         197 LPELQNLPFLTTIYADNNLLK-TLPDLP-----PSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYL  269 (353)
T ss_dssp             CCCCTTCTTCCEEECCSSCCS-SCCSCC-----TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred             ccccccccccccccccccccc-cccccc-----ccccccccccccccc-cccccccccccccccccccccccccchhccc
Confidence            223456788999999988765 333322     126677777666542 2222222221111000  0000   000000


Q ss_pred             eeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCC
Q 041463          219 VVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIP  298 (356)
Q Consensus       219 ~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  298 (356)
                      .............+++|+.|++++|.+.. +|.   .+++|++|++++|.|+ .+|..   +++|++|++++|+++ .+|
T Consensus       270 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             ECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             ccccCccccccccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            11111112233446799999999999984 443   3578999999999998 56643   568999999999998 666


Q ss_pred             ccccCcCCCCEEEcc
Q 041463          299 PSMASLIFMNHLNLS  313 (356)
Q Consensus       299 ~~~~~l~~L~~L~l~  313 (356)
                      ...   ..|+.|.+.
T Consensus       341 ~~~---~~L~~L~~~  352 (353)
T d1jl5a_         341 DIP---ESVEDLRMN  352 (353)
T ss_dssp             CCC---TTCCEEECC
T ss_pred             ccc---cccCeeECc
Confidence            543   357777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3.4e-16  Score=124.42  Aligned_cols=178  Identities=26%  Similarity=0.393  Sum_probs=86.6

Q ss_pred             EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463           83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN  162 (356)
Q Consensus        83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  162 (356)
                      ...++.+.+++...  ...+.++++|+++++.+...  ..++.+++|++|++++|.+++. + .+..+++|+.|++++|.
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCc-c-cccCCcccccccccccc
Confidence            33444444443222  23456666777766666532  2355566677777777666532 2 25666666666666665


Q ss_pred             ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecC
Q 041463          163 LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS  242 (356)
Q Consensus       163 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  242 (356)
                      +. ..+. + ..++. ++.++++++.....  .                                .+..+++|+.|++++
T Consensus        96 ~~-~~~~-l-~~l~~-L~~L~l~~~~~~~~--~--------------------------------~~~~l~~L~~L~l~~  137 (199)
T d2omxa2          96 IA-DITP-L-ANLTN-LTGLTLFNNQITDI--D--------------------------------PLKNLTNLNRLELSS  137 (199)
T ss_dssp             CC-CCGG-G-TTCTT-CSEEECCSSCCCCC--G--------------------------------GGTTCTTCSEEECCS
T ss_pred             cc-cccc-c-ccccc-cccccccccccccc--c--------------------------------ccchhhhhHHhhhhh
Confidence            54 2221 1 11222 45555544433210  0                                012233444455555


Q ss_pred             CcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEE
Q 041463          243 TNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL  310 (356)
Q Consensus       243 ~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  310 (356)
                      |.+.. . ..+..+++|++|++.+|.+++ + ..++++++|++|++++|++++ ++ .++++++|++|
T Consensus       138 n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l-~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         138 NTISD-I-SALSGLTSLQQLNFSSNQVTD-L-KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             SCCCC-C-GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhcc-c-ccccccccccccccccccccC-C-ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            55542 2 234455555555555555542 2 134555555555555555552 22 24455555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=122.21  Aligned_cols=77  Identities=29%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             cccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEE
Q 041463          232 LYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLN  311 (356)
Q Consensus       232 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  311 (356)
                      ++.++.++++++.+.+  +..+..+++|+++++++|.+.+ ++ .+..+++|++|++++|++++ ++ .+.++++|++|+
T Consensus       133 l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             cccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEE
Confidence            3345556666666653  2345567778888888888763 32 36778888888888888873 44 477788888888


Q ss_pred             ccc
Q 041463          312 LSY  314 (356)
Q Consensus       312 l~~  314 (356)
                      |++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-17  Score=139.60  Aligned_cols=210  Identities=19%  Similarity=0.149  Sum_probs=107.3

Q ss_pred             cccEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecc-cccccc-CccccCCCCCcEE
Q 041463           80 QLITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNN-YLSGEL-PLSLKNCTFMESL  156 (356)
Q Consensus        80 ~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~-~~~l~~l~~L~~L  156 (356)
                      .|++|+++++.+... ....+..+++|++|+++++.+.+..+..+..+++|++|++++| .+++.. ......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            344444444443321 1223444555555555555544444444455555555555553 233211 1112345666666


Q ss_pred             EecCCc-ccccCCchhhcccccceeEEEcccCc--ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccc
Q 041463          157 DLGDNN-LSGNIPAWIGASMPGLLHILDLSHND--LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLY  233 (356)
Q Consensus       157 ~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (356)
                      ++++|. +++...........+.++.|+++++.  +...   .                            .......++
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~---~----------------------------l~~l~~~~~  175 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---D----------------------------LSTLVRRCP  175 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---H----------------------------HHHHHHHCT
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccc---c----------------------------ccccccccc
Confidence            666643 32211111111222336666666542  1100   0                            011234566


Q ss_pred             cccEEeecCCc-ccccCchhhhcccccCeEEccCC-cCcCCCCcCcCCCCCccEEEccCCcccccC-CccccCcCCCCEE
Q 041463          234 LVNLLDLSSTN-LSAEIPAELTSLVHLGTLNLSHN-HLVGKIPEEIGNFEWLETLDLSKNKLSGSI-PPSMASLIFMNHL  310 (356)
Q Consensus       234 ~L~~L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L  310 (356)
                      +|+.|++++|. +++.....+..+++|++|++++| .+++.....++.+++|+.|++++| +++.. ......+|+|   
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---  251 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---  251 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---
Confidence            77778887754 56556666777888888888886 466555566777888888888887 44322 2222335554   


Q ss_pred             EcccCcccccCCCC
Q 041463          311 NLSYNNLSGEIPNT  324 (356)
Q Consensus       311 ~l~~n~~~~~~~~~  324 (356)
                      .+..++++...++.
T Consensus       252 ~i~~~~ls~~~~~~  265 (284)
T d2astb2         252 QINCSHFTTIARPT  265 (284)
T ss_dssp             EESCCCSCCTTCSS
T ss_pred             cccCccCCCCCCCc
Confidence            34566666554443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=7.7e-16  Score=121.63  Aligned_cols=158  Identities=21%  Similarity=0.228  Sum_probs=113.6

Q ss_pred             CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEE
Q 041463           30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILD  109 (356)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  109 (356)
                      .++++.+++.++. +|..+ .+.+++|+|++|.++...+   +..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        10 ~~~v~Cs~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~~~~---~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDI-PLHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCC-CTTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcCc-cCCCC-CCCCCEEEeCCCCCccccc---ccccCCCceEeeeeccccccccccccccccccccceee
Confidence            4567777777773 33322 2577888888887764332   35667788899999998888877788888889999999


Q ss_pred             cccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcc
Q 041463          110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL  189 (356)
Q Consensus       110 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  189 (356)
                      +++|++..+.+.+|.++++|++|++++|.++...+..|..+++|+++++++|.+.........   ...++.+.+..+.+
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~---~~~l~~~~l~~~~~  161 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF---AEWLRKKSLNGGAA  161 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH---HHHHHHHCCSGGGC
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH---hhhhhhhcccCCCe
Confidence            999998877778888899999999999999877777788899999999999987633322211   11245555555555


Q ss_pred             cccCCC
Q 041463          190 SGFIPP  195 (356)
Q Consensus       190 ~~~~~~  195 (356)
                      ....|.
T Consensus       162 ~c~~p~  167 (192)
T d1w8aa_         162 RCGAPS  167 (192)
T ss_dssp             BBCSST
T ss_pred             EeCCCh
Confidence            444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=3e-16  Score=124.03  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=53.7

Q ss_pred             cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463          234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS  313 (356)
Q Consensus       234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  313 (356)
                      +|+.|++++|.+....+.+|.++++|++|+|++|.|++..+..|..+++|++|+|++|.+.... ....-...++.+.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~  157 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLN  157 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCS
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhccc
Confidence            4444677777776666666777777777777777777556666777777777777777765321 111111234445555


Q ss_pred             cCcccccCC
Q 041463          314 YNNLSGEIP  322 (356)
Q Consensus       314 ~n~~~~~~~  322 (356)
                      .+.+....|
T Consensus       158 ~~~~~c~~p  166 (192)
T d1w8aa_         158 GGAARCGAP  166 (192)
T ss_dssp             GGGCBBCSS
T ss_pred             CCCeEeCCC
Confidence            666654444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.8e-17  Score=136.31  Aligned_cols=256  Identities=18%  Similarity=0.152  Sum_probs=169.0

Q ss_pred             eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEe
Q 041463            6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLV   85 (356)
Q Consensus         6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~   85 (356)
                      ++|+++++.+.......+..  ..+..+.+................+|++|+++++.++..   .+...+.++++|++|+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~---~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHH---HHHHHHHhCCCccccc
Confidence            47899888775332222222  345667776665554444445677999999999987642   2234577899999999


Q ss_pred             cccccccccccccccCCCCCcEEEcccCc-cccccc-ccccCCCCCcEEEeeccc-cccc-cCcccc-CCCCCcEEEecC
Q 041463           86 ISNNNLSGEIPLLFSNSSFLYILDMSNNS-LSGSIP-ESIGSLRTLRFLVLRNNY-LSGE-LPLSLK-NCTFMESLDLGD  160 (356)
Q Consensus        86 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~l~~~~-l~~~-~~~~l~-~l~~L~~L~l~~  160 (356)
                      +.+|.+.+.....+..+++|++|++++|. +++... ..+..+++|++|++++|. +++. ....+. ..++|+.|++++
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            99999887777788899999999999964 553322 233568999999999974 4422 122233 347899999997


Q ss_pred             Cc--ccccCCchhhcccccceeEEEcccCc-ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccE
Q 041463          161 NN--LSGNIPAWIGASMPGLLHILDLSHND-LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL  237 (356)
Q Consensus       161 ~~--l~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  237 (356)
                      +.  +++.....+...++. |+.|++++|. +++....                                .+..+++|++
T Consensus       158 ~~~~i~~~~l~~l~~~~~~-L~~L~L~~~~~itd~~~~--------------------------------~l~~~~~L~~  204 (284)
T d2astb2         158 YRKNLQKSDLSTLVRRCPN-LVHLDLSDSVMLKNDCFQ--------------------------------EFFQLNYLQH  204 (284)
T ss_dssp             CGGGSCHHHHHHHHHHCTT-CSEEECTTCTTCCGGGGG--------------------------------GGGGCTTCCE
T ss_pred             ccccccccccccccccccc-ccccccccccCCCchhhh--------------------------------hhcccCcCCE
Confidence            63  443333334344554 9999999875 3322221                                2345677888


Q ss_pred             EeecCC-cccccCchhhhcccccCeEEccCCcCcCCCCcC-cCCCCCccEEEccCCcccccCCccccC
Q 041463          238 LDLSST-NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEE-IGNFEWLETLDLSKNKLSGSIPPSMAS  303 (356)
Q Consensus       238 L~L~~~-~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~  303 (356)
                      |++++| .+++.....+..+++|+.|++.++ +.+..... ...+|+|+   +..+.+++..+..++.
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            999996 576666667888999999999988 44322222 23455554   5667777655555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.6e-15  Score=119.44  Aligned_cols=159  Identities=24%  Similarity=0.330  Sum_probs=84.0

Q ss_pred             cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463           28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI  107 (356)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~  107 (356)
                      .+|++|++.+|.++. ....-.+++|++|++++|.+++     ++ .+..+++|++|++++|.+++ ++ .+..+++|+.
T Consensus        46 ~~L~~L~l~~~~i~~-l~~l~~l~~L~~L~L~~n~i~~-----l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTD-----IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             cCccEEECcCCCCCC-chhHhhCCCCCEEeCCCccccC-----cc-ccccCccccccccccccccc-cc-cccccccccc
Confidence            456666666666553 2222245666666666666552     11 24456666666666666553 22 3555666666


Q ss_pred             EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463          108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN  187 (356)
Q Consensus       108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~  187 (356)
                      |+++++.+...  ..+..+++++.+.+++|.+++  +..+..+++|+.+++++|.+.+ ++. + ..++. |+.|++++|
T Consensus       117 L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l-~~l~~-L~~L~Ls~N  188 (210)
T d1h6ta2         117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-L-AGLTK-LQNLYLSKN  188 (210)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-G-TTCTT-CCEEECCSS
T ss_pred             ccccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccc-ccc-c-cCCCC-CCEEECCCC
Confidence            66666655421  234555666666666666542  2344555666666666666542 221 1 12322 666666666


Q ss_pred             cccccCCCCcCCCCCCcc
Q 041463          188 DLSGFIPPRVGNLSDMKV  205 (356)
Q Consensus       188 ~l~~~~~~~~~~l~~L~~  205 (356)
                      .++. ++ .+..+++|+.
T Consensus       189 ~i~~-l~-~l~~l~~L~~  204 (210)
T d1h6ta2         189 HISD-LR-ALAGLKNLDV  204 (210)
T ss_dssp             CCCB-CG-GGTTCTTCSE
T ss_pred             CCCC-Ch-hhcCCCCCCE
Confidence            6542 22 3455555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=6.1e-15  Score=117.05  Aligned_cols=174  Identities=23%  Similarity=0.374  Sum_probs=118.5

Q ss_pred             EcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccc
Q 041463            9 VLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISN   88 (356)
Q Consensus         9 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~   88 (356)
                      .+..+.+++...  ...+ +++++|++.++.++. +...-.+++|++|++++|.+++     ++ .+..+++|++|++++
T Consensus        24 ~l~~~~~~~~~~--~~~l-~~l~~L~l~~~~i~~-l~~l~~l~nL~~L~Ls~N~l~~-----~~-~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDL-DQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTD-----IT-PLKNLTKLVDILMNN   93 (199)
T ss_dssp             HTTCSSTTSEEC--HHHH-TTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCC-----CG-GGTTCTTCCEEECCS
T ss_pred             HhCCCCCCCccC--HHHh-cCCCEEECCCCCCCC-ccccccCCCcCcCccccccccC-----cc-cccCCcccccccccc
Confidence            455556654332  3445 788888888888774 3333357888888888888763     22 377788888888888


Q ss_pred             ccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCC
Q 041463           89 NNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIP  168 (356)
Q Consensus        89 ~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~  168 (356)
                      |.+... + .+..++.|++|+++++.....  ..+..+++|+.|++++|.+. . .+.+..+++|+.|++.+|.+.+ ++
T Consensus        94 n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~-~~~l~~~~~L~~L~l~~n~l~~-l~  166 (199)
T d2omxa2          94 NQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-D-ISALSGLTSLQQLNFSSNQVTD-LK  166 (199)
T ss_dssp             SCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-C-CGGGTTCTTCSEEECCSSCCCC-CG
T ss_pred             cccccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-c-cccccccccccccccccccccC-Cc
Confidence            877633 2 377888888888888877632  34667888888888888876 2 3457778888888888888763 32


Q ss_pred             chhhcccccceeEEEcccCcccccCCCCcCCCCCCc
Q 041463          169 AWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMK  204 (356)
Q Consensus       169 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~  204 (356)
                      . + ..++. |+.|++++|++++ + +.++.+++|+
T Consensus       167 ~-l-~~l~~-L~~L~ls~N~i~~-i-~~l~~L~~L~  197 (199)
T d2omxa2         167 P-L-ANLTT-LERLDISSNKVSD-I-SVLAKLTNLE  197 (199)
T ss_dssp             G-G-TTCTT-CCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred             c-c-cCCCC-CCEEECCCCCCCC-C-ccccCCCCCC
Confidence            2 2 22443 8888888888764 2 2455566554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-15  Score=111.02  Aligned_cols=109  Identities=23%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             cEEeecCCcccccCchhhhcccccCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463          236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY  314 (356)
Q Consensus       236 ~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  314 (356)
                      +.++++++.+. ..|..+..+++|++|++++++ ++...+..|.++++|+.|++++|+++...+.+|.++++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34777777776 456667778889999997664 7755566788899999999999999877788888899999999999


Q ss_pred             CcccccCCCCcccCcCCCccccccCccccCCCCCCCCC
Q 041463          315 NNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP  352 (356)
Q Consensus       315 n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c~  352 (356)
                      |+++...+.......|+.       +.+.||||.|||+
T Consensus        90 N~l~~l~~~~~~~~~l~~-------L~L~~Np~~C~C~  120 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQE-------LVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCE-------EECCSSCCCCCGG
T ss_pred             CCCcccChhhhccccccc-------cccCCCcccCCch
Confidence            999877766644434443       3456789999985

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=6e-16  Score=133.96  Aligned_cols=93  Identities=20%  Similarity=0.191  Sum_probs=65.3

Q ss_pred             ccccccccEEeecCCccccc----CchhhhcccccCeEEccCCcCcCCCCcCc----C--CCCCccEEEccCCcccccC-
Q 041463          229 FTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEI----G--NFEWLETLDLSKNKLSGSI-  297 (356)
Q Consensus       229 ~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~--~~~~L~~L~L~~n~i~~~~-  297 (356)
                      +...++|+.|++++|.++..    +...+..+++|++|++++|.|++.....+    .  ..++|++|++++|++++.. 
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            34566778899998887643    33456677889999999998875422222    2  3467999999999987542 


Q ss_pred             ---Ccccc-CcCCCCEEEcccCcccccC
Q 041463          298 ---PPSMA-SLIFMNHLNLSYNNLSGEI  321 (356)
Q Consensus       298 ---~~~~~-~l~~L~~L~l~~n~~~~~~  321 (356)
                         ...+. +++.|+.|+|++|++....
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence               22332 4678999999999997543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.2e-17  Score=147.45  Aligned_cols=310  Identities=16%  Similarity=0.106  Sum_probs=172.9

Q ss_pred             ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcC----CCCC-CCCCCcEEecCCCcccCcCCCCCCcccCC
Q 041463            3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRV----PNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGN   77 (356)
Q Consensus         3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~   77 (356)
                      ++|++|+++++.+++.....+...++++++|+|.+|.++...    ..++ .+++|++|++++|.++......+...+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            468999999999987543444444599999999999887432    2223 58899999999998853211112223332


Q ss_pred             -cccccEEeccccccccc----ccccccCCCCCcEEEcccCccccccccc------------------------------
Q 041463           78 -LKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGSIPES------------------------------  122 (356)
Q Consensus        78 -l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------------------  122 (356)
                       ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.+.....                              
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence             35799999999998754    3455778899999999999875311110                              


Q ss_pred             ---ccCCCCCcEEEeecccccccc----Cc-----------------------------cccCCCCCcEEEecCCccccc
Q 041463          123 ---IGSLRTLRFLVLRNNYLSGEL----PL-----------------------------SLKNCTFMESLDLGDNNLSGN  166 (356)
Q Consensus       123 ---~~~l~~L~~L~l~~~~l~~~~----~~-----------------------------~l~~l~~L~~L~l~~~~l~~~  166 (356)
                         +.....++.+.++++......    ..                             .+...+.++.+++.++.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence               112345666666655432100    00                             011223333444443332211


Q ss_pred             CC----chhhcccccceeEEEcccCcccccC----CCCcCCCCCCcccCCCCCccCCCeeeeecCC---ccccccccccc
Q 041463          167 IP----AWIGASMPGLLHILDLSHNDLSGFI----PPRVGNLSDMKVEPPKSVQHEGRLRVVTKGS---ERKYFTTLYLV  235 (356)
Q Consensus       167 ~~----~~~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L  235 (356)
                      ..    ..... ....++.+++++|.+....    ...+...+.+........      .+...+.   ..........|
T Consensus       242 ~~~~~~~~~~~-~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n------~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         242 GMAELCPGLLH-PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN------ELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             HHHHHHHHHTS-TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC------CCHHHHHHHHHHHHTSTTCCC
T ss_pred             ccchhhccccc-ccccccccccccccccccccccccccccccccccccccccc------cccccccchhhcccccccccc
Confidence            00    00001 1112555555554432110    001111111111110000      0000000   00011234578


Q ss_pred             cEEeecCCcccccCchhh----hcccccCeEEccCCcCcCC----CCcCc-CCCCCccEEEccCCccccc----CCcccc
Q 041463          236 NLLDLSSTNLSAEIPAEL----TSLVHLGTLNLSHNHLVGK----IPEEI-GNFEWLETLDLSKNKLSGS----IPPSMA  302 (356)
Q Consensus       236 ~~L~L~~~~l~~~~~~~~----~~~~~L~~L~L~~n~i~~~----~~~~~-~~~~~L~~L~L~~n~i~~~----~~~~~~  302 (356)
                      +.++++++.+.......+    ...++|++|+|++|.+++.    ++..+ ...+.|++|+|++|.+++.    +...+.
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  394 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  394 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence            889999988875543333    4456899999999988643    22223 2456799999999998754    344556


Q ss_pred             CcCCCCEEEcccCcccc
Q 041463          303 SLIFMNHLNLSYNNLSG  319 (356)
Q Consensus       303 ~l~~L~~L~l~~n~~~~  319 (356)
                      .+++|++|+|++|+++.
T Consensus       395 ~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         395 ANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HCCCCCEEECCSSSCCH
T ss_pred             cCCCCCEEECCCCcCCH
Confidence            67899999999998874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-14  Score=108.90  Aligned_cols=127  Identities=21%  Similarity=0.206  Sum_probs=95.2

Q ss_pred             HHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccC
Q 041463           23 FWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSN  101 (356)
Q Consensus        23 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~  101 (356)
                      +.+. ..+++|+|++|.|+.. +..+ .+++|+.|++++|.+..     + +.+..+++|++|++++|.+....+..+..
T Consensus        14 ~~n~-~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-----l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          14 YTNA-VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             EECT-TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             ccCc-CcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-----c-CCcccCcchhhhhcccccccCCCcccccc
Confidence            3344 5788888888888854 4443 57888889998888862     2 34777888999999999888555555677


Q ss_pred             CCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccccccCc----cccCCCCCcEEEe
Q 041463          102 SSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGELPL----SLKNCTFMESLDL  158 (356)
Q Consensus       102 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l  158 (356)
                      +++|++|++++|.+..... ..+..+++|++|++++|.++ ..+.    .+..+++|+.||-
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            8999999999998874432 45778889999999999887 3342    4678889998873

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-14  Score=108.97  Aligned_cols=130  Identities=20%  Similarity=0.113  Sum_probs=91.5

Q ss_pred             CCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccC
Q 041463           46 NSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGS  125 (356)
Q Consensus        46 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  125 (356)
                      .+.+..++++|++++|+++     .++..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+....+..+..
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-----~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             hccCcCcCcEEECCCCCCC-----ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccc
Confidence            3345677888888888887     2344456678888888888888733  34778888888888888888655555667


Q ss_pred             CCCCcEEEeecccccccc-CccccCCCCCcEEEecCCcccccCCc---hhhcccccceeEEEc
Q 041463          126 LRTLRFLVLRNNYLSGEL-PLSLKNCTFMESLDLGDNNLSGNIPA---WIGASMPGLLHILDL  184 (356)
Q Consensus       126 l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~---~~~~~~~~~L~~L~l  184 (356)
                      +++|++|++++|.+.... ...+..+++|+.+++++|.+. ..+.   .+...++. |+.|+.
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~-L~~LD~  146 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ-VRVLDF  146 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT-CSEETT
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCC-cCeeCC
Confidence            888888888888886321 245677888888888888876 3332   23334544 777763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=3e-15  Score=129.46  Aligned_cols=247  Identities=17%  Similarity=0.117  Sum_probs=160.9

Q ss_pred             CCchHHhhccCCcEeeccCCccCCcC----CCCC-CCCCCcEEecCCCcccCcCCC------CCCcccCCcccccEEecc
Q 041463           19 IPDWFWQLSLTLDELDVAYNELRGRV----PNSL-GFNFPATVDLSSNNFEGRLPL------CIPKSIGNLKQLITLVIS   87 (356)
Q Consensus        19 ~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~~~~------~~~~~~~~l~~L~~L~l~   87 (356)
                      +...+... ..+++|+|++|.+....    ...+ ..+.|+.++++++........      .+...+...++|+.|+++
T Consensus        23 l~~~L~~~-~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhhC-CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            44455555 78999999998775422    2223 578999999987754321110      122345667889999999


Q ss_pred             ccccccc----ccccccCCCCCcEEEcccCccccccccc-------------ccCCCCCcEEEeeccccccc----cCcc
Q 041463           88 NNNLSGE----IPLLFSNSSFLYILDMSNNSLSGSIPES-------------IGSLRTLRFLVLRNNYLSGE----LPLS  146 (356)
Q Consensus        88 ~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~l~~~----~~~~  146 (356)
                      +|.+...    +...+...++|++|++++|.+.......             ....+.|+.+.++++.+...    +...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            9988654    2334567789999999998865321111             13467899999999887633    2334


Q ss_pred             ccCCCCCcEEEecCCcccccCCc----hhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeec
Q 041463          147 LKNCTFMESLDLGDNNLSGNIPA----WIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTK  222 (356)
Q Consensus       147 l~~l~~L~~L~l~~~~l~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~  222 (356)
                      +...+.|+.+++++|.+......    ......+ .++.|++++|.+.......+                         
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~L-------------------------  235 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSAL-------------------------  235 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHH-------------------------
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchh-hhcccccccccccccccccc-------------------------
Confidence            56778999999999987642111    1112233 38999999887653211111                         


Q ss_pred             CCccccccccccccEEeecCCcccccCch----hhhc--ccccCeEEccCCcCcCCC----CcCcC-CCCCccEEEccCC
Q 041463          223 GSERKYFTTLYLVNLLDLSSTNLSAEIPA----ELTS--LVHLGTLNLSHNHLVGKI----PEEIG-NFEWLETLDLSKN  291 (356)
Q Consensus       223 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~----~~~~--~~~L~~L~L~~n~i~~~~----~~~~~-~~~~L~~L~L~~n  291 (356)
                         ...+...++|+.|++++|.+.+....    .+..  .+.|++|++++|.|++..    ...+. ..++|++|++++|
T Consensus       236 ---~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         236 ---AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             ---HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             ---cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence               12245667788899999999864333    3332  367999999999987432    22232 4688999999999


Q ss_pred             cccc
Q 041463          292 KLSG  295 (356)
Q Consensus       292 ~i~~  295 (356)
                      ++.+
T Consensus       313 ~~~~  316 (344)
T d2ca6a1         313 RFSE  316 (344)
T ss_dssp             BSCT
T ss_pred             cCCC
Confidence            9974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.3e-13  Score=99.94  Aligned_cols=14  Identities=43%  Similarity=0.648  Sum_probs=5.7

Q ss_pred             cCCcEeeccCCccC
Q 041463           28 LTLDELDVAYNELR   41 (356)
Q Consensus        28 ~~L~~L~l~~~~~~   41 (356)
                      ++|++|++++|.++
T Consensus        20 ~~L~~L~ls~N~l~   33 (124)
T d1dcea3          20 LLVTHLDLSHNRLR   33 (124)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCccC
Confidence            34444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=4.1e-13  Score=97.30  Aligned_cols=102  Identities=25%  Similarity=0.341  Sum_probs=57.9

Q ss_pred             cEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEE
Q 041463           54 ATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLV  133 (356)
Q Consensus        54 ~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  133 (356)
                      |.|++++|+++.     ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+... + .+..+++|++|+
T Consensus         1 R~L~Ls~n~l~~-----l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTV-----LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSS-----CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCC-----Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEE
Confidence            345556665541     22 3555666666666666665 3444556666666666666666532 2 355666666666


Q ss_pred             eecccccccc-CccccCCCCCcEEEecCCccc
Q 041463          134 LRNNYLSGEL-PLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       134 l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      +++|+++... ...+..+++|+.+++++|.+.
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            6666665322 234556666666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=5e-14  Score=111.21  Aligned_cols=111  Identities=22%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             chHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccccccccc
Q 041463           21 DWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFS  100 (356)
Q Consensus        21 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~  100 (356)
                      ..+..+ ++|++|++++|.++. ++..-++++|++|++++|.++.     ++..+..+++|++|++++|.++..  ..+.
T Consensus        42 ~sl~~L-~~L~~L~Ls~n~I~~-i~~l~~l~~L~~L~Ls~N~i~~-----i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          42 ATLSTL-KACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             HHHHHT-TTCCEEECSEEEESC-CCCHHHHTTCCEEECCEEEECS-----CSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hHHhcc-cccceeECcccCCCC-cccccCCccccChhhccccccc-----cccccccccccccccccccccccc--cccc
Confidence            344444 555555555555552 2222235555555555555441     222222234455555555555422  2244


Q ss_pred             CCCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccc
Q 041463          101 NSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLS  140 (356)
Q Consensus       101 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~  140 (356)
                      .+++|++|++++|.+..... ..+..+++|++|++++|++.
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            45555555555555542211 23444555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-11  Score=93.06  Aligned_cols=109  Identities=17%  Similarity=0.062  Sum_probs=86.0

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccc-cccccccccccCCCCCcEEEcccCcccccccccccCCCC
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNN-NLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT  128 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  128 (356)
                      +....+++++++.+.     ..|..+..++++++|++.++ .++...+..|..+++|+.|++++|++..+.+.+|..+++
T Consensus         7 c~~~~~l~c~~~~~~-----~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-----DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CSSSSCEECCSSCCC-----TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             cCCCCeEEecCCCCc-----cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccc
Confidence            344556777777665     34466777889999999766 577666778899999999999999999787888999999


Q ss_pred             CcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      |++|++++|+++ .++.......+|+.|++++|.+.
T Consensus        82 L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            999999999998 55555444457999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=4.2e-13  Score=105.83  Aligned_cols=108  Identities=19%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCC-CCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463            2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ   80 (356)
Q Consensus         2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~   80 (356)
                      +++|++|+|++|.|+. ++ .+..+ ++|++|++++|.++. ++.... ++.|++|++++|.++.     + ..+..+++
T Consensus        47 L~~L~~L~Ls~n~I~~-i~-~l~~l-~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-----l-~~~~~l~~  116 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-IS-SLSGM-ENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-----L-SGIEKLVN  116 (198)
T ss_dssp             TTTCCEEECSEEEESC-CC-CHHHH-TTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-----H-HHHHHHHH
T ss_pred             ccccceeECcccCCCC-cc-cccCC-ccccChhhccccccc-ccccccccccccccccccccccc-----c-cccccccc
Confidence            6789999999999984 43 57777 899999999999984 444433 5689999999999873     2 34778999


Q ss_pred             ccEEeccccccccccc-ccccCCCCCcEEEcccCcccccc
Q 041463           81 LITLVISNNNLSGEIP-LLFSNSSFLYILDMSNNSLSGSI  119 (356)
Q Consensus        81 L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~  119 (356)
                      |++|++++|.+..... ..+..+++|++|++++|++....
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            9999999999975432 46889999999999999986443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.7e-08  Score=76.08  Aligned_cols=64  Identities=31%  Similarity=0.257  Sum_probs=26.3

Q ss_pred             CCCCCcEEEcccCcccccc--cccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463          101 NSSFLYILDMSNNSLSGSI--PESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS  164 (356)
Q Consensus       101 ~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  164 (356)
                      .++.|++|++++|+++...  +..+..+++|+.|++++|.++....-.......|+.+++.+|++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444444444444444221  122333444555555555444221111122234555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.9e-07  Score=70.24  Aligned_cols=64  Identities=28%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             ccccccEEeecCCcccccC--chhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463          231 TLYLVNLLDLSSTNLSAEI--PAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS  294 (356)
Q Consensus       231 ~~~~L~~L~L~~~~l~~~~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~  294 (356)
                      .++.|+.|+|++|.+++..  +..+..+++|+.|++++|.|.+..+-.+....+|+.|++++|+++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3455555666666555322  233445555566666665555221112222334555555555555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=2.2e-07  Score=70.17  Aligned_cols=88  Identities=13%  Similarity=0.003  Sum_probs=43.2

Q ss_pred             CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc----ccccccCCCCCcEEEcccCccccc-------
Q 041463           50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGS-------  118 (356)
Q Consensus        50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~-------  118 (356)
                      .+.|++|++++|.+.......+...+...+.|++|++++|.+...    +...+...+.|++|+++++.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            345555555555554322222333444455566666666655432    122344555666666666543311       


Q ss_pred             ccccccCCCCCcEEEeecc
Q 041463          119 IPESIGSLRTLRFLVLRNN  137 (356)
Q Consensus       119 ~~~~~~~l~~L~~L~l~~~  137 (356)
                      ....+...++|+.|+++.+
T Consensus       123 l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCCccEeeCcCC
Confidence            1223334566666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.75  E-value=3e-06  Score=63.78  Aligned_cols=65  Identities=18%  Similarity=0.198  Sum_probs=33.0

Q ss_pred             ccCCcccccEEeccccccccc----ccccccCCCCCcEEEcccCcccccc----cccccCCCCCcEEEeeccc
Q 041463           74 SIGNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGSI----PESIGSLRTLRFLVLRNNY  138 (356)
Q Consensus        74 ~~~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~  138 (356)
                      .+...+.|++|++++|.+...    +...+...+.|++|++++|.+.+..    ..++...++|++|++++|.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            444555666666666665422    1223344455666666666554321    2233444556666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=3.1e-06  Score=63.67  Aligned_cols=111  Identities=13%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             cCCcEeeccC-CccCCcCC----CCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc----ccc
Q 041463           28 LTLDELDVAY-NELRGRVP----NSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPL   97 (356)
Q Consensus        28 ~~L~~L~l~~-~~~~~~~~----~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~   97 (356)
                      +.|++|++++ +.++....    ..+ ..++|++|++++|.++......+...+...+.++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            5666666654 23332111    111 3556666777766654332222333445556677777777665422    223


Q ss_pred             cccCCCCCcEEEcc--cCcccc----cccccccCCCCCcEEEeeccc
Q 041463           98 LFSNSSFLYILDMS--NNSLSG----SIPESIGSLRTLRFLVLRNNY  138 (356)
Q Consensus        98 ~~~~l~~L~~L~l~--~~~~~~----~~~~~~~~l~~L~~L~l~~~~  138 (356)
                      .+...+.|+.+++.  ++.+.+    .....+...++|+.|++..+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            45556677765553  444543    222334456777777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.21  E-value=2.3e-05  Score=58.63  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=54.9

Q ss_pred             CCCCcEEecCC-CcccCcCCCCCCcccCCcccccEEeccccccccc----ccccccCCCCCcEEEcccCccccc----cc
Q 041463           50 FNFPATVDLSS-NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGS----IP  120 (356)
Q Consensus        50 ~~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~  120 (356)
                      .+.|++|++++ +.++...-..+...+...++|++|++++|.+...    +...+...+.++.++++++.+...    ..
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            46677777765 3343221112233455566677777777665432    122344456666666666655422    12


Q ss_pred             ccccCCCCCcEEEee--cccccc----ccCccccCCCCCcEEEecCC
Q 041463          121 ESIGSLRTLRFLVLR--NNYLSG----ELPLSLKNCTFMESLDLGDN  161 (356)
Q Consensus       121 ~~~~~l~~L~~L~l~--~~~l~~----~~~~~l~~l~~L~~L~l~~~  161 (356)
                      ..+...++|+.+.+.  +|.+.+    .+...+...++|+.|++..+
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            334445556554443  333432    12233344555666665544