Citrus Sinensis ID: 041468

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MALHPYSIVQKSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLPELEIAQGDWQPKKRESALKYLKIYD
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEEcccccccccccccccccccHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccccccccccccHHHcccHHcccccccccEEEEccccccccccEEEEEEccccccEEEEEEEccccccccccccccccccccccHcccccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
malhpysivqksqrtvrvdapqipeddgytwrkygqkeilgskfpriargattdIRMDALqgkklqqlsddpvsfeityhgehtcqlslenppvpsslpeleiaqgdwqpkkrESALKYLKIYD
Flexible Loop (DISEMBL)
malhpysivqksqrtvrvdapqipeddgytwrkygqkeilgskfpriarGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLPEleiaqgdwqpkkresalkylkiyd
Low Complexity Region (SEG)
MALHPYSIVQKSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLPELEIAQGDWQPKKRESALKYLKIYD
Disordered region (IsUnstruct)
**************************DGYTWRKYGQKEILGSKFPRIARGATTDIRMDAL************VSFEITYHGEHTCQ**************************************
Disordered Region (DISOPRED)
**********************IPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC************************************IY*
Disordered Region (DISEMBL)
MALHPYSIVQKSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLPELEIAQGDWQPKKRESALKYLKIYD
Disordered Region (DISPRO)
**********KSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHT****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALHPYSIVQKSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLPELEIAQGDWQPKKRESALKYLKIYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q9SHB5	292	WRKY transcription factor	yes	no	0.733	0.311	0.414	3e-15
Q9SUP6	324	Probable WRKY transcripti	no	no	0.612	0.234	0.428	1e-11
Q9SKD9	295	Probable WRKY transcripti	no	no	0.653	0.274	0.418	2e-11
Q8H0Y8	313	Probable WRKY transcripti	no	no	0.653	0.258	0.407	5e-11
Q9LY00	294	Probable WRKY transcripti	no	no	0.540	0.227	0.432	6e-10
Q9FL62	303	Probable WRKY transcripti	no	no	0.483	0.198	0.433	2e-08
Q9ZUU0	429	WRKY transcription factor	no	no	0.556	0.160	0.413	4e-08
Q9C6H5	241	Probable WRKY transcripti	no	no	0.564	0.290	0.385	1e-07
Q93WV0	557	Probable WRKY transcripti	no	no	0.572	0.127	0.426	2e-07
Q9FH83	1288	Probable WRKY transcripti	no	no	0.580	0.055	0.392	3e-07

>sp|Q9SHB5|WRK55_ARATH WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 16  VRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSF 75
           +R     +P DD +TWRKYGQKEILGS+FPR     T     +    K++Q+L+DDP +F
Sbjct: 163 LRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTF 222

Query: 76  EITYHGEHTCQLS---LENPPVPSSLPELEIAQG 106
            +TY G HTC  S     +   PS++P   +  G
Sbjct: 223 RVTYRGSHTCYNSTAPTASSATPSTIPISSVTTG 256

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUP6|WRK53_ARATH Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 24  PEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEH 83
           P+DD ++WRKYGQK+ILG+KFPR     T     +    K++Q+   D   FE+TY G H
Sbjct: 156 PQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTH 215

Query: 84  TCQLSLENPPVPSSLPE 100
           TC  ++   P P + PE
Sbjct: 216 TCSQAITRTP-PLASPE 231

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May regulate the early events of leaf senescence. Negatively regulates the expression of ESR/ESP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKD9|WRK46_ARATH Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 26  DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
           DDG+ WRKYGQKEI GSK PR     T     D L  K++Q+   DP  FE+ Y G HTC
Sbjct: 104 DDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQDCLAVKQVQKSDTDPSLFEVKYLGNHTC 163

Query: 86  QLSLENPPVPS----SLPELEIAQGD 107
             ++ +P   +    SL    I +G+
Sbjct: 164 N-NITSPKTTTNFSVSLTNTNIFEGN 188

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0Y8|WRK41_ARATH Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 45/81 (55%)

Query: 24  PEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEH 83
           P DD ++WRKYGQK+ILG+KFPR     T          K++Q+   DP  FE+TY G H
Sbjct: 139 PHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDGDPTIFEVTYRGTH 198

Query: 84  TCQLSLENPPVPSSLPELEIA 104
           TC   +  P    + P+  +A
Sbjct: 199 TCSQGIPLPEKRETKPKHTVA 219

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY00|WRK70_ARATH Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%)

Query: 26  DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
           +D ++WRKYGQKEIL +KFPR     T          K++Q++  +P  F ITY G HTC
Sbjct: 120 EDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTC 179

Query: 86  QLSLENP 92
             + E P
Sbjct: 180 NTNAETP 186

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL62|WRK30_ARATH Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 26  DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
           DDG++WRKYGQK+ILG+KFPR     T          K++Q+  ++ +  EI+Y G H+C
Sbjct: 113 DDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHSC 172

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 26  DDGYTWRKYGQKEILGSKFPR-IARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHT 84
           +DG+ WRKYGQK + G+ +PR   R  + + R      K +++ SDDP +F  TY G+H 
Sbjct: 349 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRAR----KHVERASDDPRAFITTYEGKHN 404

Query: 85  CQLSLENPPVPSSLP 99
             L L +PP  S+LP
Sbjct: 405 HHL-LLSPPSSSTLP 418

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6H5|WRK63_ARATH Probable WRKY transcription factor 63 OS=Arabidopsis thaliana GN=WRKY63 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query: 17  RVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFE 76
           R D+P    DDG+TWRKYGQK I  S + R           +    K++Q + D P  + 
Sbjct: 94  RDDSPNPRLDDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQNCYATKRVQMIQDSPPVYR 153

Query: 77  ITYHGEHTCQ 86
            TY G+HTC+
Sbjct: 154 TTYLGQHTCK 163

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 9   VQKSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQL 68
           +Q SQ   R   P I  DDGY WRKYGQK + GS+FPR     T        + KKL + 
Sbjct: 194 IQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKCT----HPNCEVKKLFER 249

Query: 69  SDDPVSFEITYHGEH 83
           S D    +I Y G H
Sbjct: 250 SHDGQITDIIYKGTH 264

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 18   VDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEI 77
            V  P I E D +TWRKYGQK+ILGS+FPR                K++Q+   D     I
Sbjct: 1200 VSIPAIDEGDLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAI 1259

Query: 78   TYHGEHTCQLSLENPPVPS 96
            TY  EH       N P P+
Sbjct: 1260 TYLSEH-------NHPRPT 1271

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
11493824	353	transcription factor WRKY5 [Petroselinum	0.701	0.246	0.516	4e-16
449457464	317	PREDICTED: WRKY transcription factor 55-	0.604	0.236	0.55	4e-16
255559705	331	hypothetical protein RCOM_0689810 [Ricin	0.685	0.256	0.5	7e-16
255559625	318	WRKY transcription factor, putative [Ric	0.669	0.261	0.488	9e-16
356507518	339	PREDICTED: WRKY transcription factor 55-	0.709	0.259	0.458	2e-14
355398575	370	WRKY transcription factor [(Populus tome	0.604	0.202	0.5	2e-14
297824011	299	WRKY DNA-binding protein 55 [Arabidopsis	0.709	0.294	0.431	5e-14
356518696	331	PREDICTED: WRKY transcription factor 55-	0.645	0.241	0.470	8e-14
359490533	364	PREDICTED: probable WRKY transcription f	0.637	0.217	0.506	8e-14
15226739	292	WRKY transcription factor 55 [Arabidopsi	0.733	0.311	0.414	1e-13

>gi|11493824|gb|AAG35659.1|AF204926_1 transcription factor WRKY5 [Petroselinum crispum]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 60/93 (64%), Gaps = 6/93 (6%)

Query: 13  QRTVRVDAPQ-----IPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQ 67
           +R+VRV APQ     IP +DG+TWRKYGQKEILGS+FPR     T          K++Q+
Sbjct: 131 KRSVRVPAPQMGNTEIPPEDGFTWRKYGQKEILGSRFPRGYYRCTHQKLYQCPAKKQVQR 190

Query: 68  LSDDPVSFEITYHGEHTCQLSLENPPVPSSLPE 100
           L DDP +FE+ Y GEHTC  S   P + S+LPE
Sbjct: 191 LDDDPFTFEVIYRGEHTCTGSSTAPSM-SALPE 222

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457464|ref|XP_004146468.1| PREDICTED: WRKY transcription factor 55-like [Cucumis sativus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 53/80 (66%), Gaps = 5/80 (6%)

Query: 13  QRTVRVDAPQI-----PEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQ 67
           +RTVRV AP+I     P DDG+TWRKYGQKEILGS+FPR     T          K +Q+
Sbjct: 141 KRTVRVGAPRIGNTELPPDDGFTWRKYGQKEILGSRFPRGYFRCTHQKLYHCPAKKHVQR 200

Query: 68  LSDDPVSFEITYHGEHTCQL 87
           L DDP +FE+TY GEHTC +
Sbjct: 201 LDDDPHTFEVTYRGEHTCHM 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559705|ref|XP_002520872.1| hypothetical protein RCOM_0689810 [Ricinus communis] gi|223540003|gb|EEF41581.1| hypothetical protein RCOM_0689810 [Ricinus communis]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 5/90 (5%)

Query: 13  QRTVRVDAP-----QIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQ 67
           +RT RV AP     +IP +DGYTWRKYGQKEILGSK+PR     T          K++Q+
Sbjct: 157 KRTERVPAPRMGNTEIPPEDGYTWRKYGQKEILGSKYPRSYYRCTHQKLYHCPAKKQVQR 216

Query: 68  LSDDPVSFEITYHGEHTCQLSLENPPVPSS 97
           L DDP +FE+TY  +HTC +S   P +P S
Sbjct: 217 LDDDPYTFEVTYRDDHTCYMSATAPSIPPS 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559625|ref|XP_002520832.1| WRKY transcription factor, putative [Ricinus communis] gi|223539963|gb|EEF41541.1| WRKY transcription factor, putative [Ricinus communis]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 5/88 (5%)

Query: 13  QRTVRVDAP-----QIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQ 67
           +RT+RV AP     +IP +DGYTWRKYGQKEIL S +PR     T          K++Q+
Sbjct: 141 KRTMRVPAPRMGNTEIPPEDGYTWRKYGQKEILASNYPRGYYRCTHQKLYHCPAKKQVQR 200

Query: 68  LSDDPVSFEITYHGEHTCQLSLENPPVP 95
           L DDP +FE+TY G+HTC +S   P +P
Sbjct: 201 LDDDPYTFEVTYRGDHTCHMSSTAPSIP 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507518|ref|XP_003522511.1| PREDICTED: WRKY transcription factor 55-like [Glycine max]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 8/96 (8%)

Query: 9   VQKSQRTVRVDAPQ-----IPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGK 63
             + +R V V APQ     +P +DGYTWRKYGQKEILGSK+PR     T     +    K
Sbjct: 152 ANQEKRKVMVPAPQFGNTEVPPEDGYTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKK 211

Query: 64  KLQQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLP 99
           ++Q+L  +P  FE+TY G HTC +S      PSS+P
Sbjct: 212 QVQRLDHNPNIFEVTYRGNHTCHMS---STAPSSVP 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355398575|gb|AER70304.1| WRKY transcription factor [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 5/80 (6%)

Query: 13  QRTVRVDAPQ-----IPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQ 67
           +RTVRV A Q     IP +DG++WRKYGQKEILGS+FPR     T     +    K++Q+
Sbjct: 168 KRTVRVPAQQFGNTEIPPEDGFSWRKYGQKEILGSRFPRAYYRCTNQNLYNCPAKKQVQR 227

Query: 68  LSDDPVSFEITYHGEHTCQL 87
           L DDP   E+ Y GEHTC +
Sbjct: 228 LDDDPCRLEVVYRGEHTCHM 247

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824011|ref|XP_002879888.1| WRKY DNA-binding protein 55 [Arabidopsis lyrata subsp. lyrata] gi|297325727|gb|EFH56147.1| WRKY DNA-binding protein 55 [Arabidopsis lyrata subsp. lyrata]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 51/88 (57%)

Query: 16  VRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSF 75
           +R     +P DD +TWRKYGQKEILGS+FPR     T     +    K++Q+L+DDP +F
Sbjct: 154 LRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTF 213

Query: 76  EITYHGEHTCQLSLENPPVPSSLPELEI 103
            +TY G HTC +    P   S+ P   I
Sbjct: 214 RVTYRGSHTCHIYSTAPTASSAAPTAPI 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518696|ref|XP_003528014.1| PREDICTED: WRKY transcription factor 55-like [Glycine max]

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 9   VQKSQRTVRVDAPQ-----IPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGK 63
             + +R V V APQ     +P +DG+TWRKYGQKEILGSKFPR     T     +    K
Sbjct: 152 ANQEKRKVMVPAPQFGNTEMPPEDGFTWRKYGQKEILGSKFPRSYYRCTHQKLYECQAKK 211

Query: 64  KLQQLSDDPVSFEITYHGEHTCQLS 88
           ++Q+L  +P  FE+TY G+HTC +S
Sbjct: 212 QVQRLDQNPNIFEVTYRGDHTCHMS 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490533|ref|XP_002267793.2| PREDICTED: probable WRKY transcription factor 53-like [Vitis vinifera] gi|302143686|emb|CBI22547.3| unnamed protein product [Vitis vinifera]

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 20  APQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITY 79
            P+ P DDG++WRKYGQK+ILG+K+PR     T       L  K++Q+  DDP  FEITY
Sbjct: 128 GPEGPLDDGFSWRKYGQKDILGAKYPRSYYKCTHRNAQGCLATKQVQRSDDDPTIFEITY 187

Query: 80  HGEHTC-QLSLENPPVPSSLP 99
            G HTC Q+S + PP P++LP
Sbjct: 188 RGRHTCTQVSQQIPP-PAALP 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226739|ref|NP_181606.1| WRKY transcription factor 55 [Arabidopsis thaliana] gi|29839674|sp|Q9SHB5.1|WRK55_ARATH RecName: Full=WRKY transcription factor 55; AltName: Full=WRKY DNA-binding protein 55 gi|67633602|gb|AAY78725.1| WRKY family transcription factor [Arabidopsis thaliana] gi|225898583|dbj|BAH30422.1| hypothetical protein [Arabidopsis thaliana] gi|330254776|gb|AEC09870.1| WRKY transcription factor 55 [Arabidopsis thaliana]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 16  VRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSF 75
           +R     +P DD +TWRKYGQKEILGS+FPR     T     +    K++Q+L+DDP +F
Sbjct: 163 LRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTF 222

Query: 76  EITYHGEHTCQLS---LENPPVPSSLPELEIAQG 106
            +TY G HTC  S     +   PS++P   +  G
Sbjct: 223 RVTYRGSHTCYNSTAPTASSATPSTIPISSVTTG 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
TAIR|locus:2064816	292	WRKY55 "WRKY DNA-binding prote	0.733	0.311	0.414	1.6e-15
TAIR|locus:2128514	324	WRKY53 [Arabidopsis thaliana (	0.612	0.234	0.428	1.5e-12
TAIR|locus:2136093	313	WRKY41 [Arabidopsis thaliana (	0.653	0.258	0.407	4.9e-12
TAIR|locus:2039119	295	WRKY46 "WRKY DNA-binding prote	0.653	0.274	0.418	3.2e-11
TAIR|locus:2102539	294	WRKY70 "WRKY DNA-binding prote	0.653	0.275	0.373	1.2e-10
TAIR|locus:2195165	241	ABO3 "ABA overly sensitive mut	0.612	0.315	0.368	8.2e-09
TAIR|locus:2167428	303	WRKY30 "WRKY DNA-binding prote	0.483	0.198	0.433	1e-08
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.564	0.163	0.405	1.6e-08
TAIR|locus:2028952	249	WRKY64 "WRKY DNA-binding prote	0.564	0.281	0.371	3.5e-08
TAIR|locus:2064806	346	WRKY54 "WRKY DNA-binding prote	0.483	0.173	0.45	4.9e-08

TAIR|locus:2064816 WRKY55 "WRKY DNA-binding protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 39/94 (41%), Positives = 54/94 (57%)

Query:    16 VRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSF 75
             +R     +P DD +TWRKYGQKEILGS+FPR     T     +    K++Q+L+DDP +F
Sbjct:   163 LRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTF 222

Query:    76 EITYHGEHTCQLSLE---NPPVPSSLPELEIAQG 106
              +TY G HTC  S     +   PS++P   +  G
Sbjct:   223 RVTYRGSHTCYNSTAPTASSATPSTIPISSVTTG 256

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2128514 WRKY53 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/77 (42%), Positives = 46/77 (59%)

Query:    24 PEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEH 83
             P+DD ++WRKYGQK+ILG+KFPR     T     +    K++Q+   D   FE+TY G H
Sbjct:   156 PQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTH 215

Query:    84 TCQLSLENPPVPSSLPE 100
             TC  ++   P P + PE
Sbjct:   216 TCSQAITRTP-PLASPE 231

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010150 "leaf senescence" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2136093 WRKY41 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 33/81 (40%), Positives = 45/81 (55%)

Query:    24 PEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEH 83
             P DD ++WRKYGQK+ILG+KFPR     T          K++Q+   DP  FE+TY G H
Sbjct:   139 PHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDGDPTIFEVTYRGTH 198

Query:    84 TCQLSLENPPVPSSLPELEIA 104
             TC   +  P    + P+  +A
Sbjct:   199 TCSQGIPLPEKRETKPKHTVA 219

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2039119 WRKY46 "WRKY DNA-binding protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 36/86 (41%), Positives = 47/86 (54%)

Query:    26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
             DDG+ WRKYGQKEI GSK PR     T     D L  K++Q+   DP  FE+ Y G HTC
Sbjct:   104 DDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQDCLAVKQVQKSDTDPSLFEVKYLGNHTC 163

Query:    86 QLSLENPPVPS----SLPELEIAQGD 107
               ++ +P   +    SL    I +G+
Sbjct:   164 N-NITSPKTTTNFSVSLTNTNIFEGN 188

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2102539 WRKY70 "WRKY DNA-binding protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/83 (37%), Positives = 46/83 (55%)

Query:    10 QKSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLS 69
             +K   T  +++  +  +D ++WRKYGQKEIL +KFPR     T          K++Q++ 
Sbjct:   106 KKRSETCTIESTIL--EDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVE 163

Query:    70 DDPVSFEITYHGEHTCQLSLENP 92
              +P  F ITY G HTC  + E P
Sbjct:   164 LEPKMFSITYIGNHTCNTNAETP 186

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2195165 ABO3 "ABA overly sensitive mutant 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query:    11 KSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSD 70
             K     R D+P    DDG+TWRKYGQK I  S + R           +    K++Q + D
Sbjct:    88 KGLEIYRDDSPNPRLDDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQNCYATKRVQMIQD 147

Query:    71 DPVSFEITYHGEHTCQ 86
              P  +  TY G+HTC+
Sbjct:   148 SPPVYRTTYLGQHTCK 163

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2167428 WRKY30 "WRKY DNA-binding protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query:    26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
             DDG++WRKYGQK+ILG+KFPR     T          K++Q+  ++ +  EI+Y G H+C
Sbjct:   113 DDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHSC 172

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query:    26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
             +DG+ WRKYGQK + G+ +PR     T+    +    K +++ SDDP +F  TY G+H  
Sbjct:   349 EDGFRWRKYGQKVVGGNAYPRSYYRCTS---ANCRARKHVERASDDPRAFITTYEGKHNH 405

Query:    86 QLSLENPPVPSSLP 99
              L L +PP  S+LP
Sbjct:   406 HLLL-SPPSSSTLP 418

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

TAIR|locus:2028952 WRKY64 "WRKY DNA-binding protein 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query:    17 RVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFE 76
             R ++P    DDG+TWRKYGQK I  S + R     T     +    K++Q + D+P  + 
Sbjct:    94 RDESPTPRPDDGFTWRKYGQKTIKTSPYQRCYYRCTYAKDQNCNARKRVQMIQDNPPVYR 153

Query:    77 ITYHGEHTCQ 86
              TY G+H C+
Sbjct:   154 TTYLGKHVCK 163

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2064806 WRKY54 "WRKY DNA-binding protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 27/60 (45%), Positives = 33/60 (55%)

Query:    26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
             +D Y WRKYGQKEIL + FPR     T          K++Q+   D   F+ITY G HTC
Sbjct:   152 EDRYAWRKYGQKEILNTTFPRSYFRCTHKPTQGCKATKQVQKQDQDSEMFQITYIGYHTC 211

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
smart00774	59	smart00774, WRKY, DNA binding domain	3e-19
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	8e-16

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score = 74.4 bits (184), Expect = 3e-19
 Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 18/68 (26%)

Query: 26 DDGYTWRKYGQKEILGSKFPR------IARG--ATTDIRMDALQGKKLQQLSDDPVSFEI 77
          DDGY WRKYGQK I GS +PR        +G  A           K++Q+  DDP   E+
Sbjct: 2  DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAK----------KQVQRSDDDPSVVEV 51

Query: 78 TYHGEHTC 85
          TY GEHT 
Sbjct: 52 TYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score = 66.1 bits (162), Expect = 8e-16
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
          DDGY WRKYGQK + GS FPR     T+         K++++ SDDP   EITY GEH  
Sbjct: 2  DDGYNWRKYGQKPVKGSPFPRSYYRCTSP---GCPVKKQVERSSDDPQIVEITYEGEHNH 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	100.0
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	100.0
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	96.01
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	87.47
PF10533	47	Plant_zn_clust: Plant zinc cluster domain; InterPr	81.59

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=100.00  E-value=1.2e-35  Score=193.88  Aligned_cols=60  Identities=45%  Similarity=0.727  Sum_probs=52.6

Q ss_pred             CCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCC
Q 041468           25 EDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQL   87 (124)
Q Consensus        25 ~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~   87 (124)
                      .+|||+|||||||.|+|+++|||||||++.   +|+|+|+|||+.+||.+|+|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~---~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP---GCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT---TEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc---ChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999998   999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=100.00  E-value=4.5e-35  Score=191.00  Aligned_cols=59  Identities=51%  Similarity=0.795  Sum_probs=56.4

Q ss_pred             CCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccC
Q 041468           25 EDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC   85 (124)
Q Consensus        25 ~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth   85 (124)
                      ++|||.|||||||.|+|+++||+|||||+.  +||+|+|+||++++||.+|+|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~--~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYS--QGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEecccc--CCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            479999999999999999999999999992  49999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.01  E-value=0.0037  Score=38.46  Aligned_cols=50  Identities=14%  Similarity=0.123  Sum_probs=24.8

Q ss_pred             CCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccC
Q 041468           26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC   85 (124)
Q Consensus        26 ~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth   85 (124)
                      -|||.-.+....      ....|++|+.....+|+|+=.+.  .++. .+ +...++|||
T Consensus        13 ~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~-~~~~~~HnH   62 (62)
T PF04500_consen   13 YDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RV-VRTNGEHNH   62 (62)
T ss_dssp             ETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EE-EE-S---SS
T ss_pred             ECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EE-EECCCccCC
Confidence            366666554433      45689999999878999976666  3333 33 444599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=87.47  E-value=0.59  Score=30.94  Aligned_cols=31  Identities=13%  Similarity=0.039  Sum_probs=26.0

Q ss_pred             ccCcccccceeecCCCCEEEEEEceeccCCCC
Q 041468           57 MDALQGKKLQQLSDDPVSFEITYHGEHTCQLS   88 (124)
Q Consensus        57 ~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~   88 (124)
                      .||+|+=.|.+.. ++.-.++.+..+|||+..
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            4999988888766 778888899999999864

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO []

Probab=81.59  E-value=1.1  Score=28.08  Aligned_cols=23  Identities=26%  Similarity=0.215  Sum_probs=17.7

Q ss_pred             CCCcccccccEEEecCCCCCCCC
Q 041468            5 PYSIVQKSQRTVRVDAPQIPEDD   27 (124)
Q Consensus         5 ~~~~~~k~k~~~~v~~~~~~~~D   27 (124)
                      .++...|.||+|+|+|++.-..|
T Consensus        25 sKkRK~RvKR~irVPAiS~K~AD   47 (47)
T PF10533_consen   25 SKKRKSRVKRTIRVPAISSKIAD   47 (47)
T ss_pred             CCcccccceeeEEeecccccccC
Confidence            35677889999999999855444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-05

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 26 DDGYTWRKYGQKEILGSKFPRIARGATT---DIRMDALQGKKLQQLSDDPVSFEITYHGE 82
          DDGY WRKYGQK + G+ +PR     TT    +R      K +++ + DP +   TY G+
Sbjct: 18 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVR------KHVERAATDPKAVVTTYEGK 71
Query: 83 HTCQL 87
          H   L
Sbjct: 72 HNHDL 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-13
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	7e-13

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 60.2 bits (146), Expect = 2e-13
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 13/67 (19%)

Query: 26 DDGYTWRKYGQKEILGSKFPR-----IARGATTDIRMDALQGKKLQQLSDDPVSFEITYH 80
          +DGY WRKYGQK + GS +PR      + G            K +++ S D      TY 
Sbjct: 15 NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVK--------KHVERSSHDTKLLITTYE 66

Query: 81 GEHTCQL 87
          G+H   +
Sbjct: 67 GKHDHDM 73

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 58.6 bits (142), Expect = 7e-13
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 13/67 (19%)

Query: 26 DDGYTWRKYGQKEILGSKFPR-----IARGATTDIRMDALQGKKLQQLSDDPVSFEITYH 80
          DDGY WRKYGQK + G+ +PR        G            K +++ + DP +   TY 
Sbjct: 18 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVR--------KHVERAATDPKAVVTTYE 69

Query: 81 GEHTCQL 87
          G+H   L
Sbjct: 70 GKHNHDL 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	86.73

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=7.9e-37  Score=207.11  Aligned_cols=74  Identities=30%  Similarity=0.485  Sum_probs=67.7

Q ss_pred             ccEEEecCCCCCCCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCCC
Q 041468           13 QRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSL   89 (124)
Q Consensus        13 k~~~~v~~~~~~~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~~   89 (124)
                      +.+|+..+...+++|||.|||||||.|+|++|||+|||||+.   ||+|+|+|||+++||.+|+|||+|+|||+.|.
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~---gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP---GCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECST---TCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCC---CCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            345666666688999999999999999999999999999986   99999999999999999999999999999874

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=2.1e-36  Score=205.91  Aligned_cols=70  Identities=36%  Similarity=0.587  Sum_probs=64.1

Q ss_pred             EEecCCCCCCCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCC
Q 041468           16 VRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLS   88 (124)
Q Consensus        16 ~~v~~~~~~~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~   88 (124)
                      ++..+...+++|||.|||||||.|+|++|||+|||||+.   ||+|+|+|||+++||.+|+|||+|+|||+.|
T Consensus         8 ~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~---gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A            8 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP---GCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS---SCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             EeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcC---CCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            333444578999999999999999999999999999996   9999999999999999999999999999876

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=86.73  E-value=0.36  Score=31.55  Aligned_cols=51  Identities=14%  Similarity=0.115  Sum_probs=31.8

Q ss_pred             CCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCC
Q 041468           25 EDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLS   88 (124)
Q Consensus        25 ~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~   88 (124)
                      .-|||.-.+--      ....+.|.+|+.....+|+|+-...  .++     +.-.+.|||++.
T Consensus        24 v~~Gy~Y~~~~------~~~~~~yWrC~~~~~~kCrARi~T~--~~~-----~~~~~~HnH~p~   74 (87)
T 2rpr_A           24 VHESFLYRKEK------AAGEKVYWMCRDQARLGCRSRAITQ--GHR-----IMVMRSHCHQPD   74 (87)
T ss_dssp             EETTEEEEEEE------ECSSCEEEEEGGGTTSCCCCEEEEE--TTE-----EEECSCCSSCCC
T ss_pred             EECCEEEEeee------cCCCcEEEEecCCCCCCCCEEEEEc--CCC-----EECCCCcCCCCc
Confidence            34777666421      1234689999997666999964433  222     335788999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-17

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.9 bits (166), Expect = 4e-17
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85
          DDGY WRKYGQK + G+ +PR     TT         K +++ + DP +   TY G+H  
Sbjct: 11 DDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNH 67

Query: 86 QL 87
           L
Sbjct: 68 DL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.9e-37  Score=206.06  Aligned_cols=66  Identities=36%  Similarity=0.586  Sum_probs=61.9

Q ss_pred             CCCCCCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCCC
Q 041468           21 PQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSL   89 (124)
Q Consensus        21 ~~~~~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~~   89 (124)
                      .....||||.|||||||.|+|+++||+||||++.   ||+|+|+|||+++||.+|+|||+|+|||+.|.
T Consensus         6 ~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~---~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           6 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP---GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS---SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccCCCCcEecccCceeccCCCCceEEEEcccc---CCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            3467899999999999999999999999999997   99999999999999999999999999998763